Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012755
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001790254.1| PREDICTED: proteasome 26S non-ATPase subunit... 466 e-131
Alignment gi|NP_001030283.1| 26S proteasome non-ATPase regulatory subunit... 463 e-131
>ref|XP_001790254.1| PREDICTED: proteasome 26S non-ATPase subunit 8-like [Bos taurus].
Length = 287
Score = 466 bits (1200), Expect = e-131
Identities = 234/257 (91%), Positives = 234/257 (91%)
Frame = +1
Query: 151 MYEQLKGEWNRKSPNLSKCGXXXXXXXXXXXXXNFLPTTGTKLTKQQLILARDILEIGAQ 330
MYEQLKGEWNRKSPNLSKCG NFLPTTGTKLTKQQLILARDILEIGAQ
Sbjct: 31 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 90
Query: 331 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQXXXXXXXXXXSQNRVAEFHTELE 510
WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQ SQNRVAEFHTELE
Sbjct: 91 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 150
Query: 511 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 690
RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG
Sbjct: 151 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 210
Query: 691 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPST 870
CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPST
Sbjct: 211 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPST 270
Query: 871 ELAKQVIEYARQLEMIV 921
ELAKQVIEYARQLEMIV
Sbjct: 271 ELAKQVIEYARQLEMIV 287
>ref|NP_001030283.1| 26S proteasome non-ATPase regulatory subunit 8 [Bos taurus].
Length = 287
Score = 463 bits (1192), Expect = e-131
Identities = 232/257 (90%), Positives = 233/257 (90%)
Frame = +1
Query: 151 MYEQLKGEWNRKSPNLSKCGXXXXXXXXXXXXXNFLPTTGTKLTKQQLILARDILEIGAQ 330
MYEQLKGEWNRKSPNLSKCG NFLPTTGTKLTKQQLILARDI EIGAQ
Sbjct: 31 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDIQEIGAQ 90
Query: 331 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQXXXXXXXXXXSQNRVAEFHTELE 510
WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQ SQNRVAEFHTELE
Sbjct: 91 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 150
Query: 511 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 690
RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG
Sbjct: 151 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 210
Query: 691 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPST 870
CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLG+NNYYSFASQQQKPEDTTIPST
Sbjct: 211 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGINNYYSFASQQQKPEDTTIPST 270
Query: 871 ELAKQVIEYARQLEMIV 921
ELAKQVIEYARQLEMIV
Sbjct: 271 ELAKQVIEYARQLEMIV 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,600,973
Number of extensions: 1020929
Number of successful extensions: 2971
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2968
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012755
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533681.1| PREDICTED: similar to 26S proteasome non-ATPase... 472 e-133
Alignment gi|XP_854622.1| PREDICTED: similar to 26S proteasome non-ATPase... 234 1e-61
>ref|XP_533681.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
8 (26S proteasome regulatory subunit S14) (p31) [Canis
familiaris].
Length = 351
Score = 472 bits (1215), Expect = e-133
Identities = 243/297 (81%), Positives = 244/297 (82%)
Frame = +1
Query: 31 SARRFAASRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYEQLKGEWNRKSPNLSKCG 210
+ RRFAASRKM MYEQLKGEWNRKSPNLSKCG
Sbjct: 55 AGRRFAASRKMAATAVNGAPGASGSGPAAASGAVLQVAAGMYEQLKGEWNRKSPNLSKCG 114
Query: 211 XXXXXXXXXXXXXNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKC 390
NFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKC
Sbjct: 115 EELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKC 174
Query: 391 YYFDYKEQLPESAYMHQXXXXXXXXXXSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLE 570
YYFDYKEQLPESAYMHQ SQNRVAEFHTELERLPAKDIQTNVYIKHPVSLE
Sbjct: 175 YYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLE 234
Query: 571 QYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFF 750
QYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFF
Sbjct: 235 QYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFF 294
Query: 751 NTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 921
NTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV
Sbjct: 295 NTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 351
>ref|XP_854622.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
8 (26S proteasome regulatory subunit S14) (p31) [Canis
familiaris].
Length = 191
Score = 234 bits (596), Expect = 1e-61
Identities = 128/218 (58%), Positives = 144/218 (66%), Gaps = 1/218 (0%)
Frame = +1
Query: 268 GTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQXX 447
GT+LTKQQ ILA +ILEIGAQWSIL KD+PSF+ YM QLKCYYF+ +EQL ESA MHQ
Sbjct: 9 GTQLTKQQFILAGNILEIGAQWSILCKDVPSFQHYMTQLKCYYFNCEEQLSESADMHQLS 68
Query: 448 XXXXXXXXSQNRVAEFHTELERLPAKD-IQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNI 624
SQNRVAEFHT + + +YIK PVSL+QY
Sbjct: 69 GLNFLFLLSQNRVAEFHTRVGAAACQGHADQGIYIKRPVSLQQY---------------- 112
Query: 625 PAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLG 804
IAGCIE+AYE++LFTEAT+ILFFNTPKK D KKRGWVLG
Sbjct: 113 -------------------IAGCIEEAYEQMLFTEATQILFFNTPKKKADCTKKRGWVLG 153
Query: 805 LNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMI 918
L+NYYSF SQQQKPE TTIPSTELA QVIEYA QLEM+
Sbjct: 154 LSNYYSFVSQQQKPEGTTIPSTELATQVIEYAWQLEMV 191
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,227,749
Number of extensions: 1047316
Number of successful extensions: 2969
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2965
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012755
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127158.1| PREDICTED: 26S proteasome non-ATPase regulat... 475 e-134
>ref|XP_003127158.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 8-like [Sus
scrofa].
Length = 351
Score = 475 bits (1222), Expect = e-134
Identities = 245/297 (82%), Positives = 245/297 (82%)
Frame = +1
Query: 31 SARRFAASRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYEQLKGEWNRKSPNLSKCG 210
SARRFAASRKM MYEQLKGEWNRKSPNLSKCG
Sbjct: 55 SARRFAASRKMAAATVNGVAGGSSSGPAAASGAVLQAAAGMYEQLKGEWNRKSPNLSKCG 114
Query: 211 XXXXXXXXXXXXXNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKC 390
NFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKC
Sbjct: 115 EELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKC 174
Query: 391 YYFDYKEQLPESAYMHQXXXXXXXXXXSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLE 570
YYFDYKEQLPESAYMHQ SQNRVAEFHTELERLPAKDIQTNVYIKHPVSLE
Sbjct: 175 YYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLE 234
Query: 571 QYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFF 750
QYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFF
Sbjct: 235 QYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFF 294
Query: 751 NTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 921
NTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV
Sbjct: 295 NTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 351
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,289,397
Number of extensions: 659527
Number of successful extensions: 2040
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012755
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080821.3| 26S proteasome non-ATPase regulatory subunit 8 ... 451 e-127
>ref|NP_080821.3| 26S proteasome non-ATPase regulatory subunit 8 [Mus musculus].
Length = 353
Score = 451 bits (1161), Expect = e-127
Identities = 227/257 (88%), Positives = 230/257 (89%)
Frame = +1
Query: 151 MYEQLKGEWNRKSPNLSKCGXXXXXXXXXXXXXNFLPTTGTKLTKQQLILARDILEIGAQ 330
MYEQLK EWNRK+PNLSKCG NFLPTTGTKLTKQQLILARDILEIGAQ
Sbjct: 97 MYEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 156
Query: 331 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQXXXXXXXXXXSQNRVAEFHTELE 510
WSIL KDIPSFERYMAQLKCYYFDYKEQLPESAYMHQ SQNRVAEFHTELE
Sbjct: 157 WSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 216
Query: 511 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 690
RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG
Sbjct: 217 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 276
Query: 691 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPST 870
CIEKAYEKILF EATRILFF+TPKKMTDYAKKRGWVLG NNYYSFASQQQKPED+TIPST
Sbjct: 277 CIEKAYEKILFAEATRILFFSTPKKMTDYAKKRGWVLGPNNYYSFASQQQKPEDSTIPST 336
Query: 871 ELAKQVIEYARQLEMIV 921
ELAKQVIEYARQLEMIV
Sbjct: 337 ELAKQVIEYARQLEMIV 353
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,406,556
Number of extensions: 848593
Number of successful extensions: 2415
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012755
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002803.2| 26S proteasome non-ATPase regulatory subunit 8 ... 464 e-131
>ref|NP_002803.2| 26S proteasome non-ATPase regulatory subunit 8 [Homo sapiens].
Length = 350
Score = 464 bits (1193), Expect = e-131
Identities = 233/257 (90%), Positives = 233/257 (90%)
Frame = +1
Query: 151 MYEQLKGEWNRKSPNLSKCGXXXXXXXXXXXXXNFLPTTGTKLTKQQLILARDILEIGAQ 330
MYEQLKGEWNRKSPNLSKCG NFLPTTGTKLTKQQLILARDILEIGAQ
Sbjct: 94 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQ 153
Query: 331 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQXXXXXXXXXXSQNRVAEFHTELE 510
WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQ SQNRVAEFHTELE
Sbjct: 154 WSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELE 213
Query: 511 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 690
RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG
Sbjct: 214 RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAG 273
Query: 691 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPST 870
CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLG NNYYSFASQQQKPEDTTIPST
Sbjct: 274 CIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQQKPEDTTIPST 333
Query: 871 ELAKQVIEYARQLEMIV 921
ELAKQVIEYARQLEMIV
Sbjct: 334 ELAKQVIEYARQLEMIV 350
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,410,060
Number of extensions: 1024059
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2904
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012755
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1249 0.0
Sscrofa_Chr06 472 e-130
Sscrofa_Chr08 64 2e-07
>Sscrofa_Chr01
|| Length = 315321322
Score = 1249 bits (630), Expect = 0.0
Identities = 891/981 (90%), Gaps = 19/981 (1%)
Strand = Plus / Minus
Query: 42 gtttgccgcatcacggaagatggcggccgcgacggtgaacggggtggctggcggctcgag 101
||||||| |||||||||||||||| | | | || ||||||| |||||| || ||||||||
Sbjct: 255026234 gtttgccacatcacggaagatggcagtcacaacagtgaacgaggtggcgggtggctcgag 255026175
Query: 102 ctcggggcctgcagcggcctcgggcgcagtcctgcaggccgcagccggtatgtacgaaca 161
|| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct: 255026174 ctgggggcctgcagtggccttgggcccagtcctgcaggccgcagccggcatgtacgaaca 255026115
Query: 162 actcaagggcgagtggaaccgtaaaagccccaatcttagcaaatgcggtgaagaactggg 221
|||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct: 255026114 actcaagggcaagtggaaccatgaaagccccaatcttagcaaatgcagtgaagaactggg 255026055
Query: 222 ccgtctcaagctggttctgttggagctcaacttcctgccaaccacagggaccaaactgac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255026054 ccgtctcaagctggttctgttggagctcaacttcctgccaaccacagggaccaaactgac 255025995
Query: 282 caaacagcagctcattctggcccgtgacatactggagatcggggcccagtggagtatctt 341
||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||| |||
Sbjct: 255025994 caaacagcagctcattctgccccatgacatactagagattggggcccagtggagtagctt 255025935
Query: 342 acgcaaggacatcccctccttcgagcggtacatggcccagctcaaatgctactacttcga 401
|| |||||||||||||||||| |||||||||||| ||||||||| || | |||||| ||
Sbjct: 255025934 acacaaggacatcccctccttttagcggtacatggtccagctcaagtgttgctactttga 255025875
Query: 402 ttacaaggagcagctcccggagtcagcctatatgcaccagctcttggggctcaacctcct 461
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 255025874 ttac---gaatagctcccagagtcagcctatatgcaccagctcttggggctcaacctcgt 255025818
Query: 462 cttcctgctgtcccagaaccgggtggctgagttccacacagagctggagcggctgcctgc 521
|||||||||||| ||| ||| ||| |||||||||||||||||||||||| ||| |||||
Sbjct: 255025817 cttcctgctgtctcagcaccaggtagctgagttccacacagagctggagtggccacctgc 255025758
Query: 522 caaggacatccagaccaatgtgtacatcaagcatccggtgtctctggagcaatacctgat 581
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 255025757 caaggacatccagaccaatgtatacatcaagcagccggtgtccctggagcaatacctgat 255025698
Query: 582 ggagggcagctacaacaaggtgttcctggccaaaggcaacatccctgctgagagctatac 641
||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||
Sbjct: 255025697 ggagggcagctacaataaggtgttcctggccaaaggaaacatccctgtagagagctgtac 255025638
Query: 642 cttcttcattgacatcctgcttgacactatcagggacgagattgctggctgcatcgagaa 701
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 255025637 attcttcattgacatcctgtttgacactatcagggacgagattgctggctgcatcgagaa 255025578
Query: 702 ggcctatgaaaaaatcctcttcaccgaggccactcggatcctcttcttcaacacacccaa 761
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 255025577 ggcctatgaaaaaatcctcctcactgaggccactcggatcctcttcttcaacacacccaa 255025518
Query: 762 aaagatgacggactacgccaagaagcgagggtgggtcctgggcctcaacaactactacag 821
||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 255025517 aaagatgacggactatgccaggaagcgagggtggatcctgggcctcaacaactactacag 255025458
Query: 822 ctttgccagccagcagcagaagccagaagataccaccatcccttctacggagctggccaa 881
||||| ||||||||||||||| |||||||| ||||||||| | ||| | |||||||||||
Sbjct: 255025457 ctttgtcagccagcagcagaacccagaagaaaccaccatctcctcttcagagctggccaa 255025398
Query: 882 acaggtcatcgagtacgcccggcagctggagatgattgtctgagcccgccaggcaccggg 941
|||||||||| ||||| || ||||||||||||||||||||| |||
Sbjct: 255025397 acaggtcatcaagtacacctggcagctggagatgattgtct----------------ggg 255025354
Query: 942 gtggggcagggctcgcgttatttaaagcagttgcagggcagggtttcctccaataaaggt 1001
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct: 255025353 gtggggcagggctcacgttatttaaagcagttgcagtgcagagtttcctccaataaatgt 255025294
Query: 1002 ggattgacattttctctctta 1022
|||||||||||||||||||||
Sbjct: 255025293 ggattgacattttctctctta 255025273
>Sscrofa_Chr06
|| Length = 157765593
Score = 472 bits (238), Expect = e-130
Identities = 238/238 (100%)
Strand = Plus / Plus
Query: 785 agcgagggtgggtcctgggcctcaacaactactacagctttgccagccagcagcagaagc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42796945 agcgagggtgggtcctgggcctcaacaactactacagctttgccagccagcagcagaagc 42797004
Query: 845 cagaagataccaccatcccttctacggagctggccaaacaggtcatcgagtacgcccggc 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42797005 cagaagataccaccatcccttctacggagctggccaaacaggtcatcgagtacgcccggc 42797064
Query: 905 agctggagatgattgtctgagcccgccaggcaccggggtggggcagggctcgcgttattt 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42797065 agctggagatgattgtctgagcccgccaggcaccggggtggggcagggctcgcgttattt 42797124
Query: 965 aaagcagttgcagggcagggtttcctccaataaaggtggattgacattttctctctta 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42797125 aaagcagttgcagggcagggtttcctccaataaaggtggattgacattttctctctta 42797182
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 31 tcggctcggcggtttgccgcatcacggaagatggcggccgcgacggtgaacggggtggct 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42790608 tcggctcggcggtttgccgcatcacggaagatggcggccgcgacggtgaacggggtggct 42790667
Query: 91 ggcggctcgagctcggggcctgcagcggcctcgggcgcagtcctgcaggccgcagccggt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42790668 ggcggctcgagctcggggcctgcagcggcctcgggcgcagtcctgcaggccgcagccggt 42790727
Query: 151 atgtacgaacaactcaagggcgagtggaaccgtaaaagccccaatcttagcaaatgcggt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42790728 atgtacgaacaactcaagggcgagtggaaccgtaaaagccccaatcttagcaaatgcggt 42790787
Query: 211 gaagaactgggccgtctcaag 231
|||||||||||||||||||||
Sbjct: 42790788 gaagaactgggccgtctcaag 42790808
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 408 ggagcagctcccggagtcagcctatatgcaccagctcttggggctcaacctcctcttcct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42793466 ggagcagctcccggagtcagcctatatgcaccagctcttggggctcaacctcctcttcct 42793525
Query: 468 gctgtcccagaaccgggtggctgagttccacacagagctggagcggctgcctgccaagga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42793526 gctgtcccagaaccgggtggctgagttccacacagagctggagcggctgcctgccaagga 42793585
Query: 528 catccagaccaatgtgtacatcaagcatccggtgtctctggagcaa 573
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42793586 catccagaccaatgtgtacatcaagcatccggtgtctctggagcaa 42793631
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 672 cagggacgagattgctggctgcatcgagaaggcctatgaaaaaatcctcttcaccgaggc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42795906 cagggacgagattgctggctgcatcgagaaggcctatgaaaaaatcctcttcaccgaggc 42795965
Query: 732 cactcggatcctcttcttcaacacacccaaaaagatgacggactacgccaagaag 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42795966 cactcggatcctcttcttcaacacacccaaaaagatgacggactacgccaagaag 42796020
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 574 tacctgatggagggcagctacaacaaggtgttcctggccaaaggcaacatccctgctgag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42794604 tacctgatggagggcagctacaacaaggtgttcctggccaaaggcaacatccctgctgag 42794663
Query: 634 agctataccttcttcattgacatcctgcttgacactatcagg 675
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42794664 agctataccttcttcattgacatcctgcttgacactatcagg 42794705
Score = 198 bits (100), Expect = 4e-48
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 305 gtgacatactggagatcggggcccagtggagtatcttacgcaaggacatcccctccttcg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42792056 gtgacatactggagatcggggcccagtggagtatcttacgcaaggacatcccctccttcg 42792115
Query: 365 agcggtacatggcccagctcaaatgctactacttcgattacaag 408
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 42792116 agcggtacatggcccagctcaaatgttactacttcgattacaag 42792159
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 230 agctggttctgttggagctcaacttcctgccaaccacagggaccaaactgaccaaacagc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42791863 agctggttctgttggagctcaacttcctgccaaccacagggaccaaactgaccaaacagc 42791922
Query: 290 agctcattctggcccgtga 308
|||||||||||||||||||
Sbjct: 42791923 agctcattctggcccgtga 42791941
>Sscrofa_Chr08
|| Length = 148491826
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 959 ttatttaaagcagttgcagggcagggtttcctccaataaaggtggattgacatttt 1014
||||||||||||||| ||| |||| | |||||||||| ||||| ||||||||||||
Sbjct: 138240371 ttatttaaagcagtttcagtgcagtgcttcctccaatcaaggtagattgacatttt 138240316
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,428,232
Number of extensions: 132
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 10
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)