Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012756
(1419 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068927.1| acid ceramidase precursor [Bos taurus]. 732 0.0
Alignment gi|NP_001093839.1| N-acylethanolamine-hydrolyzing acid amidase ... 194 2e-49
>ref|NP_001068927.1| acid ceramidase precursor [Bos taurus].
Length = 395
Score = 732 bits (1889), Expect = 0.0
Identities = 338/395 (85%), Positives = 373/395 (94%)
Frame = +2
Query: 80 MQGGSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYK 259
M G SRLT +LLS + C VAQ VPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYK
Sbjct: 1 MLGWSRLTFILLSGIVTCLVAQQVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYK 60
Query: 260 RWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIA 439
RWHELMV KAPALKVIVNS+KN+VNAFVPSGKI+ +VDQKLPGLLGNFPGPFEEEMKGIA
Sbjct: 61 RWHELMVVKAPALKVIVNSMKNIVNAFVPSGKIIHLVDQKLPGLLGNFPGPFEEEMKGIA 120
Query: 440 AVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTE 619
AVT IPLGEII +NIFYEFFTICTSIITEDK GHLLHGRN+DFG+ LGWNINN+TWV+TE
Sbjct: 121 AVTEIPLGEIILFNIFYEFFTICTSIITEDKEGHLLHGRNLDFGVFLGWNINNDTWVITE 180
Query: 620 QLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWV 799
+LKPLTVNL+FQRNNKT+FKA +FAGYVG++TGFKPGLFS+TLNERFS +GG++G++EW+
Sbjct: 181 ELKPLTVNLDFQRNNKTLFKATTFAGYVGMLTGFKPGLFSVTLNERFSIDGGFMGVMEWI 240
Query: 800 LGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKE 979
LGKKDA+W+GFI+RSVLENSTSYEE KNILTKTK+LAPAYFILGGN SGEGCVITRDRK+
Sbjct: 241 LGKKDAQWVGFIIRSVLENSTSYEETKNILTKTKILAPAYFILGGNQSGEGCVITRDRKQ 300
Query: 980 SLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLST 1159
SLD+YELDPK GRWYVVQTNYDRWKN FFLDDRRTPAK+CLNQTTQENISFAT+YDVLST
Sbjct: 301 SLDIYELDPKHGRWYVVQTNYDRWKNPFFLDDRRTPAKMCLNQTTQENISFATIYDVLST 360
Query: 1160 KPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCLGW 1264
KP+LNKLTV+T LIDV KGQFETYLRDCPDPC+GW
Sbjct: 361 KPILNKLTVYTVLIDVTKGQFETYLRDCPDPCIGW 395
>ref|NP_001093839.1| N-acylethanolamine-hydrolyzing acid amidase [Bos taurus].
Length = 357
Score = 194 bits (492), Expect = 2e-49
Identities = 113/327 (34%), Positives = 180/327 (55%)
Frame = +2
Query: 221 PWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGN 400
P + ++LD P RW L V + + +++ +++ +VP +L ++ + +P L
Sbjct: 34 PLFNVSLDAAPQLRW--LPVLQHYDRDFLHSAMAHIIGDYVPQW-VLALIRKVVPELELL 90
Query: 401 FPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGLLL 580
P PF +E++G+ L + I N+ YEF CTSI+ +D GH+ HGRN+D+
Sbjct: 91 LPQPFADEIRGMCDALDFNLVDCILLNLAYEFSAFCTSIVAQDSKGHIYHGRNLDY---- 146
Query: 581 GWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERF 760
V L+ LT+++ F +N + + +F GYVG+ TG P F+++ +ER
Sbjct: 147 ---------VFGSFLRNLTLDVQFIKNGQIAYTGTTFVGYVGLWTGQSPHKFTVSGDER- 196
Query: 761 SSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNV 940
G + + L ++ + + +++R+ L S ++E A L KT L+A Y+I+GG
Sbjct: 197 -DKGWWWENMIAALFQRHSP-VSWLIRTTLSESENFEAAVYKLAKTPLIADVYYIVGGTS 254
Query: 941 SGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQE 1120
EG VITR+R D++ LDP G W+ V+TNYD WK DDRRTPA LN T Q
Sbjct: 255 PKEGVVITRNRGGPADIWPLDPLNGAWFRVETNYDHWKPVPKADDRRTPAIKALNATGQA 314
Query: 1121 NISFATLYDVLSTKPVLNKLTVFTTLI 1201
N+S TL+ VLS PV N T++TT++
Sbjct: 315 NLSLETLFQVLSVFPVCNNYTIYTTVM 341
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,292,643
Number of extensions: 1549648
Number of successful extensions: 4444
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4440
Number of HSP's successfully gapped: 2
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012756
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012756
(1419 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540012.2| PREDICTED: similar to N-acylsphingosine amidohy... 664 0.0
>ref|XP_540012.2| PREDICTED: similar to N-acylsphingosine amidohydrolase (acid
ceramidase) 1 preproprotein isoform a [Canis familiaris].
Length = 386
Score = 664 bits (1713), Expect = 0.0
Identities = 309/353 (87%), Positives = 336/353 (95%)
Frame = +2
Query: 206 YRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLP 385
YRG VPWYTINLDLPPYKRWHELM DKAPALK+IVNSLK++V AFVPSGKI++IVDQKLP
Sbjct: 34 YRGSVPWYTINLDLPPYKRWHELMADKAPALKIIVNSLKDLVTAFVPSGKIMQIVDQKLP 93
Query: 386 GLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMD 565
GLLGNFPGPFEEEMKGIAAVTGIPLGEI+++N+FYEFFTICTSIITEDK GHLLHGRNMD
Sbjct: 94 GLLGNFPGPFEEEMKGIAAVTGIPLGEILTFNVFYEFFTICTSIITEDKEGHLLHGRNMD 153
Query: 566 FGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLT 745
FG+ LGWNINNNTWVVTEQLKPL+VNL+FQRNNKTVFKA+SFAGYVG++TGFKPGLFSLT
Sbjct: 154 FGIFLGWNINNNTWVVTEQLKPLSVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLT 213
Query: 746 LNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFI 925
LNERFS NGGY+G++EW+LGKKDA WIGFI R VLEN TSYEEAKN L KTK+LAPAYFI
Sbjct: 214 LNERFSINGGYLGVIEWILGKKDAMWIGFITRLVLENGTSYEEAKNTLIKTKILAPAYFI 273
Query: 926 LGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLN 1105
LGGN SGEGCVITRDRK+SLDVYEL+PKQ RWYVVQTNYDRWKN FLDDRRTPAK+CLN
Sbjct: 274 LGGNKSGEGCVITRDRKQSLDVYELNPKQDRWYVVQTNYDRWKNPLFLDDRRTPAKMCLN 333
Query: 1106 QTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCLGW 1264
QTTQENISFAT+YDVLSTKPVLNKLTVFTTL+DV KGQ+ETYLRDCPDPC+GW
Sbjct: 334 QTTQENISFATMYDVLSTKPVLNKLTVFTTLMDVTKGQYETYLRDCPDPCIGW 386
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,710,874
Number of extensions: 1601232
Number of successful extensions: 4565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4565
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012756
(1419 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134235.2| PREDICTED: acid ceramidase-like, partial [Su... 767 0.0
Alignment gi|XP_003129135.1| PREDICTED: n-acylethanolamine-hydrolyzing ac... 190 1e-48
>ref|XP_003134235.2| PREDICTED: acid ceramidase-like, partial [Sus scrofa].
Length = 369
Score = 767 bits (1980), Expect = 0.0
Identities = 368/369 (99%), Positives = 369/369 (100%)
Frame = +2
Query: 158 WTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNA 337
WTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNA
Sbjct: 1 WTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNA 60
Query: 338 FVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSI 517
FVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSI
Sbjct: 61 FVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSI 120
Query: 518 ITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAG 697
ITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAG
Sbjct: 121 ITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAG 180
Query: 698 YVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEA 877
YVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEA
Sbjct: 181 YVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEA 240
Query: 878 KNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKN 1057
KNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKN
Sbjct: 241 KNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKN 300
Query: 1058 TFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLR 1237
TFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLR
Sbjct: 301 TFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLR 360
Query: 1238 DCPDPCLGW 1264
DCPDPC+GW
Sbjct: 361 DCPDPCIGW 369
>ref|XP_003129135.1| PREDICTED: n-acylethanolamine-hydrolyzing acid amidase-like [Sus
scrofa].
Length = 356
Score = 190 bits (483), Expect = 1e-48
Identities = 116/329 (35%), Positives = 178/329 (54%), Gaps = 2/329 (0%)
Frame = +2
Query: 221 PWYTINLDLPPYKRWHELM--VDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLL 394
P + ++LD P RW ++ DK ++ +L +V VP +L ++ + + L
Sbjct: 33 PLFNVSLDAAPELRWLPVLRHFDK----DLLRAALAQIVWDNVPEW-VLTLIRKAVWELE 87
Query: 395 GNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGL 574
P PF +E++G+ LG+ I N+ YE CTSI+ +D GH+ HGRN+D+
Sbjct: 88 FFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAF 147
Query: 575 LLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNE 754
L+ LTV++ F +N K + +F GYVG+ TG P F+++ +E
Sbjct: 148 -------------GRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDE 194
Query: 755 RFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGG 934
R G + + L ++ + I +++R+ L S S+E A L KT L+A Y+I+GG
Sbjct: 195 R--DKGWWWENVIAALFQRHSP-ISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGG 251
Query: 935 NVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTT 1114
EG VITR+R+ D++ LDP G W+ V+TNYD WK DDRRTPA LN T
Sbjct: 252 TTPREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATG 311
Query: 1115 QENISFATLYDVLSTKPVLNKLTVFTTLI 1201
Q N++ TL+ VLS PV N T++TT++
Sbjct: 312 QANLTLETLFQVLSVFPVYNNYTIYTTVM 340
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,209,057
Number of extensions: 996799
Number of successful extensions: 2816
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2813
Number of HSP's successfully gapped: 2
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012756
(1419 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062708.1| acid ceramidase precursor [Mus musculus]. 689 0.0
Alignment gi|NP_080248.2| N-acylethanolamine-hydrolyzing acid amidase iso... 194 2e-49
Alignment gi|NP_001157159.1| N-acylethanolamine-hydrolyzing acid amidase ... 191 2e-48
>ref|NP_062708.1| acid ceramidase precursor [Mus musculus].
Length = 394
Score = 689 bits (1778), Expect = 0.0
Identities = 317/395 (80%), Positives = 362/395 (91%)
Frame = +2
Query: 80 MQGGSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYK 259
M+G S LT VL + A+ CA AQ VPPWTEDCRKSTYPPSGPTYRGPVPW+TINLDLPPYK
Sbjct: 1 MRGQSLLTWVL-AAAVTCAQAQDVPPWTEDCRKSTYPPSGPTYRGPVPWHTINLDLPPYK 59
Query: 260 RWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIA 439
RWHEL+ KAPAL+++VNS+ ++VN FVPSGK++++VDQKLPG++G+ P PF EEM+GIA
Sbjct: 60 RWHELLAQKAPALRILVNSITSLVNTFVPSGKLMKMVDQKLPGMIGSLPDPFGEEMRGIA 119
Query: 440 AVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTE 619
VTGIPLGEIIS+NIFYE FT+CTSIITED+ GHLLHGRNMDFG+ LGWNINNNTWVVTE
Sbjct: 120 DVTGIPLGEIISFNIFYELFTMCTSIITEDEKGHLLHGRNMDFGIFLGWNINNNTWVVTE 179
Query: 620 QLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWV 799
+LKPLTVNL+FQRNNKTVFKA SF GYVG++TGFKPGLFSL+LNERFS NGGY+GILEW+
Sbjct: 180 ELKPLTVNLDFQRNNKTVFKATSFVGYVGMLTGFKPGLFSLSLNERFSINGGYLGILEWM 239
Query: 800 LGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKE 979
G+KDA+W+GFI RSVLEN+TSYEEAKN LTKTK++AP YFILGG SGEGCVITR+RKE
Sbjct: 240 FGRKDAQWVGFITRSVLENTTSYEEAKNTLTKTKIMAPVYFILGGKKSGEGCVITRERKE 299
Query: 980 SLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLST 1159
SLDVYELDPK GRWYVVQTNYDRWKNT F+DDRRTPAK CLN TTQ+N+SFAT+YDVLST
Sbjct: 300 SLDVYELDPKHGRWYVVQTNYDRWKNTLFIDDRRTPAKKCLNHTTQKNLSFATIYDVLST 359
Query: 1160 KPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCLGW 1264
KPVLNKLTVFTTL+DV KGQFE++LRDCPDPC+GW
Sbjct: 360 KPVLNKLTVFTTLMDVTKGQFESHLRDCPDPCIGW 394
>ref|NP_080248.2| N-acylethanolamine-hydrolyzing acid amidase isoform 1 [Mus musculus].
Length = 362
Score = 194 bits (492), Expect = 2e-49
Identities = 114/330 (34%), Positives = 171/330 (51%)
Frame = +2
Query: 212 GPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGL 391
G P + ++LD P +RW ++ P + ++ ++ VP +L +V + + +
Sbjct: 36 GTPPLFNVSLDAAPEQRWLPMLRHYDPDF--LRTAVAQVIGDRVPQW-VLGMVGEIVSKV 92
Query: 392 LGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFG 571
P PF +E++ I + L + I N+ YE CTSI+ +D GH+ HGRN+D+
Sbjct: 93 ESFLPQPFTDEIRSICDSLNLSLADGILVNLAYEASAFCTSIVAQDSQGHIYHGRNLDYP 152
Query: 572 LLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLN 751
+ L+ LT N+ F +N + F +F GYVG+ TG P F+++ +
Sbjct: 153 F-------------GKILRKLTANVQFIKNGQIAFTGTTFVGYVGLWTGQSPHKFTISGD 199
Query: 752 ERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILG 931
ER I LG W+ +R L S S+E A L KT L+A Y+I+G
Sbjct: 200 ERDKGWWWENMIAALSLGHSPISWL---IRKTLSESESFEAAVYTLAKTPLIADVYYIVG 256
Query: 932 GNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQT 1111
G EG VITRDR D++ LDP G W+ V+TNYD WK +DDRRTPA LN T
Sbjct: 257 GTSPKEGVVITRDRGGPADIWPLDPLNGEWFRVETNYDHWKPAPKVDDRRTPAIKALNAT 316
Query: 1112 TQENISFATLYDVLSTKPVLNKLTVFTTLI 1201
Q +++ TL+ VLS PV N T++TT++
Sbjct: 317 GQAHLNLETLFQVLSLFPVYNNYTIYTTVM 346
>ref|NP_001157159.1| N-acylethanolamine-hydrolyzing acid amidase isoform 2 [Mus musculus].
Length = 360
Score = 191 bits (484), Expect = 2e-48
Identities = 114/330 (34%), Positives = 171/330 (51%)
Frame = +2
Query: 212 GPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGL 391
G P + ++LD P +RW ++ P + ++ ++ VP +L +V + + +
Sbjct: 36 GTPPLFNVSLDAAPEQRWLPMLRHYDPDF--LRTAVAQVIG--VPQW-VLGMVGEIVSKV 90
Query: 392 LGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFG 571
P PF +E++ I + L + I N+ YE CTSI+ +D GH+ HGRN+D+
Sbjct: 91 ESFLPQPFTDEIRSICDSLNLSLADGILVNLAYEASAFCTSIVAQDSQGHIYHGRNLDYP 150
Query: 572 LLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLN 751
+ L+ LT N+ F +N + F +F GYVG+ TG P F+++ +
Sbjct: 151 F-------------GKILRKLTANVQFIKNGQIAFTGTTFVGYVGLWTGQSPHKFTISGD 197
Query: 752 ERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILG 931
ER I LG W+ +R L S S+E A L KT L+A Y+I+G
Sbjct: 198 ERDKGWWWENMIAALSLGHSPISWL---IRKTLSESESFEAAVYTLAKTPLIADVYYIVG 254
Query: 932 GNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQT 1111
G EG VITRDR D++ LDP G W+ V+TNYD WK +DDRRTPA LN T
Sbjct: 255 GTSPKEGVVITRDRGGPADIWPLDPLNGEWFRVETNYDHWKPAPKVDDRRTPAIKALNAT 314
Query: 1112 TQENISFATLYDVLSTKPVLNKLTVFTTLI 1201
Q +++ TL+ VLS PV N T++TT++
Sbjct: 315 GQAHLNLETLFQVLSLFPVYNNYTIYTTVM 344
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,211,959
Number of extensions: 1338978
Number of successful extensions: 3682
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3677
Number of HSP's successfully gapped: 3
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012756
(1419 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808592.2| acid ceramidase isoform a preproprotein [Homo s... 730 0.0
Alignment gi|NP_004306.3| acid ceramidase isoform b [Homo sapiens]. 700 0.0
Alignment gi|NP_001120977.1| acid ceramidase isoform c [Homo sapiens]. 630 0.0
Alignment gi|NP_055250.2| N-acylethanolamine-hydrolyzing acid amidase iso... 182 7e-46
Alignment gi|NP_001035861.1| N-acylethanolamine-hydrolyzing acid amidase ... 163 3e-40
>ref|NP_808592.2| acid ceramidase isoform a preproprotein [Homo sapiens].
Length = 395
Score = 730 bits (1884), Expect = 0.0
Identities = 338/395 (85%), Positives = 372/395 (94%)
Frame = +2
Query: 80 MQGGSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYK 259
M G S + LVLL+ A++CAVAQ+ PPWTEDCRKSTYPPSGPTYRG VPWYTINLDLPPYK
Sbjct: 1 MPGRSCVALVLLAAAVSCAVAQHAPPWTEDCRKSTYPPSGPTYRGAVPWYTINLDLPPYK 60
Query: 260 RWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIA 439
RWHELM+DKAP LKVIVNSLKNM+N FVPSGKI+++VD+KLPGLLGNFPGPFEEEMKGIA
Sbjct: 61 RWHELMLDKAPVLKVIVNSLKNMINTFVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIA 120
Query: 440 AVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTE 619
AVT IPLGEIIS+NIFYE FTICTSI+ EDK GHL+HGRNMDFG+ LGWNINN+TWV+TE
Sbjct: 121 AVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITE 180
Query: 620 QLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWV 799
QLKPLTVNL+FQRNNKTVFKA+SFAGYVG++TGFKPGLFSLTLNERFS NGGY+GILEW+
Sbjct: 181 QLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLTLNERFSINGGYLGILEWI 240
Query: 800 LGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKE 979
LGKKD WIGF+ R+VLENSTSYEEAKN+LTKTK+LAPAYFILGGN SGEGCVITRDRKE
Sbjct: 241 LGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAYFILGGNQSGEGCVITRDRKE 300
Query: 980 SLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLST 1159
SLDVYELD KQGRWYVVQTNYDRWK+ FFLDDRRTPAK+CLN+T+QENISF T+YDVLST
Sbjct: 301 SLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMCLNRTSQENISFETMYDVLST 360
Query: 1160 KPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCLGW 1264
KPVLNKLTV+TTLIDV KGQFETYLRDCPDPC+GW
Sbjct: 361 KPVLNKLTVYTTLIDVTKGQFETYLRDCPDPCIGW 395
>ref|NP_004306.3| acid ceramidase isoform b [Homo sapiens].
Length = 411
Score = 700 bits (1807), Expect = 0.0
Identities = 323/369 (87%), Positives = 352/369 (95%)
Frame = +2
Query: 158 WTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNA 337
WTEDCRKSTYPPSGPTYRG VPWYTINLDLPPYKRWHELM+DKAP LKVIVNSLKNM+N
Sbjct: 43 WTEDCRKSTYPPSGPTYRGAVPWYTINLDLPPYKRWHELMLDKAPVLKVIVNSLKNMINT 102
Query: 338 FVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSI 517
FVPSGKI+++VD+KLPGLLGNFPGPFEEEMKGIAAVT IPLGEIIS+NIFYE FTICTSI
Sbjct: 103 FVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSI 162
Query: 518 ITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAG 697
+ EDK GHL+HGRNMDFG+ LGWNINN+TWV+TEQLKPLTVNL+FQRNNKTVFKA+SFAG
Sbjct: 163 VAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAG 222
Query: 698 YVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEA 877
YVG++TGFKPGLFSLTLNERFS NGGY+GILEW+LGKKD WIGF+ R+VLENSTSYEEA
Sbjct: 223 YVGMLTGFKPGLFSLTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEA 282
Query: 878 KNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKN 1057
KN+LTKTK+LAPAYFILGGN SGEGCVITRDRKESLDVYELD KQGRWYVVQTNYDRWK+
Sbjct: 283 KNLLTKTKILAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKH 342
Query: 1058 TFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLR 1237
FFLDDRRTPAK+CLN+T+QENISF T+YDVLSTKPVLNKLTV+TTLIDV KGQFETYLR
Sbjct: 343 PFFLDDRRTPAKMCLNRTSQENISFETMYDVLSTKPVLNKLTVYTTLIDVTKGQFETYLR 402
Query: 1238 DCPDPCLGW 1264
DCPDPC+GW
Sbjct: 403 DCPDPCIGW 411
>ref|NP_001120977.1| acid ceramidase isoform c [Homo sapiens].
Length = 389
Score = 630 bits (1626), Expect = 0.0
Identities = 300/376 (79%), Positives = 325/376 (86%), Gaps = 7/376 (1%)
Frame = +2
Query: 158 WTEDCRKSTYPPSGPT-------YRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNS 316
WTEDCRKSTYPPSGPT YRG VPWYTINLDLPPYKRWHELM+DKAP
Sbjct: 43 WTEDCRKSTYPPSGPTVFPAVIRYRGAVPWYTINLDLPPYKRWHELMLDKAP-------- 94
Query: 317 LKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEF 496
+PGLLGNFPGPFEEEMKGIAAVT IPLGEIIS+NIFYE
Sbjct: 95 ---------------------VPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYEL 133
Query: 497 FTICTSIITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVF 676
FTICTSI+ EDK GHL+HGRNMDFG+ LGWNINN+TWV+TEQLKPLTVNL+FQRNNKTVF
Sbjct: 134 FTICTSIVAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVF 193
Query: 677 KAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLEN 856
KA+SFAGYVG++TGFKPGLFSLTLNERFS NGGY+GILEW+LGKKD WIGF+ R+VLEN
Sbjct: 194 KASSFAGYVGMLTGFKPGLFSLTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLEN 253
Query: 857 STSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQT 1036
STSYEEAKN+LTKTK+LAPAYFILGGN SGEGCVITRDRKESLDVYELD KQGRWYVVQT
Sbjct: 254 STSYEEAKNLLTKTKILAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQT 313
Query: 1037 NYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKG 1216
NYDRWK+ FFLDDRRTPAK+CLN+T+QENISF T+YDVLSTKPVLNKLTV+TTLIDV KG
Sbjct: 314 NYDRWKHPFFLDDRRTPAKMCLNRTSQENISFETMYDVLSTKPVLNKLTVYTTLIDVTKG 373
Query: 1217 QFETYLRDCPDPCLGW 1264
QFETYLRDCPDPC+GW
Sbjct: 374 QFETYLRDCPDPCIGW 389
>ref|NP_055250.2| N-acylethanolamine-hydrolyzing acid amidase isoform 1 precursor [Homo
sapiens].
Length = 359
Score = 182 bits (462), Expect = 7e-46
Identities = 113/350 (32%), Positives = 181/350 (51%), Gaps = 6/350 (1%)
Frame = +2
Query: 221 PWYTINLDLPPYKRW------HELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKL 382
P + ++LD P RW ++L + +A +VI + + V+ + GK++ +++ L
Sbjct: 34 PRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLI--GKVVLELERFL 91
Query: 383 PGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNM 562
P PF E++G+ + L + + N+ YE CTSI+ +D GH+ HGRN+
Sbjct: 92 PQ-------PFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRNL 144
Query: 563 DFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSL 742
D+ L+ LTV++ F +N + F +F GYVG+ TG P F++
Sbjct: 145 DYPF-------------GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTV 191
Query: 743 TLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYF 922
+ +ER G + L ++ + +++R+ L S ++E A L KT L+A Y+
Sbjct: 192 SGDER--DKGWWWENAIAALFRRHIP-VSWLIRATLSESENFEAAVGKLAKTPLIADVYY 248
Query: 923 ILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICL 1102
I+GG EG VITR+R D++ LDP G W+ V+TNYD WK DDRRT A L
Sbjct: 249 IVGGTSPREGVVITRNRDGPADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKAL 308
Query: 1103 NQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDP 1252
N T Q N+S L+ +LS PV N T++TT++ G + Y+ +P
Sbjct: 309 NATGQANLSLEALFQILSVVPVYNNFTIYTTVMSA--GSPDKYMTRIRNP 356
>ref|NP_001035861.1| N-acylethanolamine-hydrolyzing acid amidase isoform 2 precursor [Homo
sapiens].
Length = 323
Score = 163 bits (413), Expect = 3e-40
Identities = 102/314 (32%), Positives = 162/314 (51%), Gaps = 6/314 (1%)
Frame = +2
Query: 221 PWYTINLDLPPYKRW------HELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKL 382
P + ++LD P RW ++L + +A +VI + + V+ + GK++ +++ L
Sbjct: 34 PRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLI--GKVVLELERFL 91
Query: 383 PGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNM 562
P PF E++G+ + L + + N+ YE CTSI+ +D GH+ HGRN+
Sbjct: 92 PQ-------PFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRNL 144
Query: 563 DFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSL 742
D+ L+ LTV++ F +N + F +F GYVG+ TG P F++
Sbjct: 145 DYPF-------------GNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTV 191
Query: 743 TLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYF 922
+ +ER G + L ++ + +++R+ L S ++E A L KT L+A Y+
Sbjct: 192 SGDER--DKGWWWENAIAALFRRHIP-VSWLIRATLSESENFEAAVGKLAKTPLIADVYY 248
Query: 923 ILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICL 1102
I+GG EG VITR+R D++ LDP G W+ V+TNYD WK DDRRT A L
Sbjct: 249 IVGGTSPREGVVITRNRDGPADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKAL 308
Query: 1103 NQTTQENISFATLY 1144
N T Q N+S L+
Sbjct: 309 NATGQANLSLEALF 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,710,386
Number of extensions: 1574593
Number of successful extensions: 4596
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4590
Number of HSP's successfully gapped: 5
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012756
(1419 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 436 e-119
>Sscrofa_Chr17
|| Length = 69701581
Score = 436 bits (220), Expect = e-119
Identities = 239/244 (97%), Gaps = 1/244 (0%)
Strand = Plus / Minus
Query: 1176 agctgacagtattcacaaccttgatagacgttatcaaaggtcagtttgaaacgtacctgc 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6297329 agctgacagtattcacaaccttgatagacgttatcaaaggtcagtttgaaacgtacctgc 6297270
Query: 1236 gggactgcccagacccctgtttaggttggtgagcacacgcctggattccaggatgcgccc 1295
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6297269 gggactgcccagacccctgtataggttggtgagcacacgcctggattccaggatgcgccc 6297210
Query: 1296 tctgtgacatcaggactggagctcacacctggctgaacagtgcagccgtctcatctcctt 1355
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct: 6297209 tctgtgacatcaggactggagctcacacgtggctgagcagtgcagccgtctcatctcc-t 6297151
Query: 1356 tgcaaagactgagactctgggcaggttctctttgaagcatgagcttgtccttttcagtat 1415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6297150 tgcaaagactgagactctgggcaggttctctttgaggcatgagcttgtccttttcagtat 6297091
Query: 1416 gttt 1419
||||
Sbjct: 6297090 gttt 6297087
Score = 295 bits (149), Expect = 3e-77
Identities = 155/157 (98%)
Strand = Plus / Plus
Query: 1 cgtggcatgttccgacctcaggtgctgcctcccgcggcttcagctggcgttttttgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6244760 cgtggcatgttccgacctcaggtgctgcctcccgcggcttcagctggcgttttttgcagc 6244819
Query: 61 ggtgttggctactggaaccatgcagggcgggagtcgcctaaccctggtcctcctgagcgt 120
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6244820 ggtgttggctgctggaaccatgcagggcaggagtcgcctaaccctggtcctcctgagcgt 6244879
Query: 121 tgccatcgcctgcgcggtggcgcagtacgtgccaccg 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 6244880 tgccatcgcctgcgcggtggcgcagtacgtgccaccg 6244916
Score = 295 bits (149), Expect = 3e-77
Identities = 155/157 (98%)
Strand = Plus / Minus
Query: 1 cgtggcatgttccgacctcaggtgctgcctcccgcggcttcagctggcgttttttgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6333757 cgtggcatgttccgacctcaggtgctgcctcccgcggcttcagctggcgttttttgcagc 6333698
Query: 61 ggtgttggctactggaaccatgcagggcgggagtcgcctaaccctggtcctcctgagcgt 120
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6333697 ggtgttggctgctggaaccatgcagggcaggagtcgcctaaccctggtcctcctgagcgt 6333638
Query: 121 tgccatcgcctgcgcggtggcgcagtacgtgccaccg 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 6333637 tgccatcgcctgcgcggtggcgcagtacgtgccaccg 6333601
Score = 291 bits (147), Expect = 5e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 582 ggtggaatataaataacaatacctgggtcgtaactgagcaactgaaacctttaacagtga 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6306603 ggtggaatataaataacaatacctgggtcgtaactgagcaactgaaacctttaacagtga 6306544
Query: 642 atttgaacttccaaagaaacaataaaactgtcttcaaggcggcaagttttgctggctatg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6306543 atttgaacttccaaagaaacaataaaactgtcttcaaggcggcaagttttgctggctatg 6306484
Query: 702 tgggcgtgatgacaggattcaaaccag 728
|||||||||||||||||||||||||||
Sbjct: 6306483 tgggcgtgatgacaggattcaaaccag 6306457
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 863 agttatgaagaagccaagaatatattgaccaaaacaaagctattggccccagcgtacttt 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6299321 agttatgaagaagccaagaatatattgaccaaaacaaagctattggccccagcgtacttt 6299262
Query: 923 atcctgggaggcaacgtgtctggggaaggttgtgtgattacacgagacagaaaagagtct 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6299261 atcctgggaggcaacgtgtctggggaaggttgtgtgattacacgagacagaaaagagtct 6299202
Query: 983 ttggatgtgtatga 996
||||||||||||||
Sbjct: 6299201 ttggatgtgtatga 6299188
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 997 actcgaccccaagcagggtagatggtatgttgtacaaacaaattatgaccgttggaaaaa 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6299082 actcgaccccaagcagggtagatggtatgttgtacaaacaaattatgaccgttggaaaaa 6299023
Query: 1057 taccttcttccttgatgatcgcagaacacctgcaaagatttgtctaaaccagacaaccca 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6299022 taccttcttccttgatgatcgcagaacacctgcaaagatttgtctaaaccagacaaccca 6298963
Query: 1117 agag 1120
||||
Sbjct: 6298962 agag 6298959
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 205 ctatagaggtccagttccgtggtacaccataaatctggatttgccaccgtacaaaagatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6317255 ctatagaggtccagttccgtggtacaccataaatctggatttgccaccgtacaaaagatg 6317196
Query: 265 gcatgaattgatggttgacaaggcgccagcg 295
|||||||||||||||||||||||||||||||
Sbjct: 6317195 gcatgaattgatggttgacaaggcgccagcg 6317165
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 295 gctaaaagttatagtgaattccctgaagaatatggtaaatgcatttgtgccaagtggaaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6316412 gctaaaagttatagtgaattccctgaagaatatggtaaatgcatttgtgccaagtggaaa 6316353
Query: 355 aattctggagatagtggatcagaaattg 382
||||||||||||||||||||||||||||
Sbjct: 6316352 aattctggagatagtggatcagaaattg 6316325
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 781 agggatcctagaatgggttttgggaaagaaagatgccaagtggatagggtttatccttcg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6303480 agggatcctagaatgggttttgggaaagaaagatgccaagtggatagggtttatccttcg 6303421
Query: 841 atcagttctggaaaatagcacaag 864
||||||||||||||||||||||||
Sbjct: 6303420 atcagttctggaaaatagcacaag 6303397
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 382 gcctggtctgcttggcaactttcctggaccttttgaggaggaaatgaaggggattgcagc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311431 gcctggtctgcttggcaactttcctggaccttttgaggaggaaatgaaggggattgcagc 6311372
Query: 442 tgtcactggcatacctttagg 462
|||||||||||||||||||||
Sbjct: 6311371 tgtcactggcatacctttagg 6311351
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 460 aggagagattatttcctacaatattttctatgaattttttaccatttgtacttcaataat 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6308086 aggagagattatttcctacaatattttctatgaattttttaccatttgtacttcaataat 6308027
Query: 520 aacagaagataaaggaggt 538
|||||||||||||||||||
Sbjct: 6308026 aacagaagataaaggaggt 6308008
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 1119 agaatatctcatttgcaaccttgtacgatgtcctgtcaacaaaacctgtcctcaacaag 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298568 agaatatctcatttgcaaccttgtacgatgtcctgtcaacaaaacctgtcctcaacaag 6298510
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 728 ggactgtttagtcttacactaaatgaacgtttcagttcaaatggcggttatatagg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6304297 ggactgtttagtcttacactaaatgaacgtttcagttcaaatggcggttatatagg 6304242
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 535 aggtcatctgctacatgggcggaacatggatttcggactattgcttgggt 584
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6307190 aggtcatctgctacatgggcggaacatggatttcggactattgcttgggt 6307141
Score = 95.6 bits (48), Expect = 6e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 157 gtggacagaagactgcagaaaatcaacctatcccccctctggaccaac 204
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320800 gtggacagaagactgcagaaaatcaacctatcccccctctggaccaac 6320753
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,127,283
Number of extensions: 250
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 15
Length of query: 1419
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1398
Effective length of database: 2,808,413,156
Effective search space: 3926161592088
Effective search space used: 3926161592088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)