Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012761
(1802 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015638.1| sorting nexin-17 [Bos taurus]. 818 0.0
Alignment gi|XP_002692826.1| PREDICTED: sorting nexin 17-like [Bos taurus]. 274 2e-73
Alignment gi|XP_001249967.1| PREDICTED: sorting nexin 17-like [Bos taurus]. 274 2e-73
Alignment gi|NP_001092426.1| sorting nexin-27 [Bos taurus]. 117 3e-26
>ref|NP_001015638.1| sorting nexin-17 [Bos taurus].
Length = 470
Score = 818 bits (2113), Expect = 0.0
Identities = 423/470 (90%), Positives = 426/470 (90%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA SLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
Sbjct: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTV+DIERGWILVT
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVADIERGWILVT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
Sbjct: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
LRLPGQQLREGSFRVTRMRCWRV EVRLELAFEYLMSKDRLQ
Sbjct: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPGRGRGEVRLELAFEYLMSKDRLQ 360
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 1449
WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
Sbjct: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 420
Query: 1450 SPDASRDTMXXXXXXXXXXXXRGIGTPSTDASASDVHGNFAFEGIGDEDL 1599
SPDASR++M RGIGTP TDASASDVHGNFAFEGIGDEDL
Sbjct: 421 SPDASRESMVKLSSKLSAVSLRGIGTPGTDASASDVHGNFAFEGIGDEDL 470
>ref|XP_002692826.1| PREDICTED: sorting nexin 17-like [Bos taurus].
Length = 439
Score = 274 bits (700), Expect = 2e-73
Identities = 145/388 (37%), Positives = 232/388 (59%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHF IP ++ R D+ G YV Y+++++G L C+VRYSQL +EQL++ +G N LP FP
Sbjct: 3 MHFCIPVSQQRP-DALGGRYVLYSVYLDGFLFCKVRYSQLHRWNEQLKRVFG-NCLPPFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PK ++T + ++RR+QLE+Y+Q V DP + S+ F FL+ SL+
Sbjct: 61 PKYYLAMTTSMADERRDQLEQYLQNVTMDPNMLRSDVFIDFLKLVQLDTFSMATKKASLD 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
+LL +G+ + + +LTSD E VLE V+ + L +L+ YFSLFL++ ++G S V+KL
Sbjct: 121 ILLPDGRSIKIEILTSDTAERVLEVVSHNIGLCQELLEYFSLFLIQFCKEGRLSVVKKLA 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
+FELP VS+ S + K+ LRK Y D + D +M+ R ++L+Y Q + DIE+ W T
Sbjct: 181 DFELPCVSLRSSEVENCKVGLRKWYLDPSLDARLMDCRTAVDLIYMQAIQDIEKEWAKPT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
+ Q ++L+ LQ++ ++ +FL LA+ ++HYGY+R + C D PE C ++S GN+E+S
Sbjct: 241 EVQRQKLEDLQKEDNQTKFLELAREVQHYGYMRLEPCTCDHPEPGCQALLSVGNNEISCC 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
+ LP Q ++ F++ R++CW+V LEL F+Y +
Sbjct: 301 ITLPDNQTQDVIFQMDRVKCWQV---TFLGTLLDTDGPQQTLNQNLELRFQY-FEDSHWR 356
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKS 1353
W I + QA ++S CL+ M+ E MVK++
Sbjct: 357 WFVIYTKQAFLLSSCLKKMISEKMVKQA 384
>ref|XP_001249967.1| PREDICTED: sorting nexin 17-like [Bos taurus].
Length = 439
Score = 274 bits (700), Expect = 2e-73
Identities = 145/388 (37%), Positives = 232/388 (59%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHF IP ++ R D+ G YV Y+++++G L C+VRYSQL +EQL++ +G N LP FP
Sbjct: 3 MHFCIPVSQQRP-DALGGRYVLYSVYLDGFLFCKVRYSQLHRWNEQLKRVFG-NCLPPFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PK ++T + ++RR+QLE+Y+Q V DP + S+ F FL+ SL+
Sbjct: 61 PKYYLAMTTSMADERRDQLEQYLQNVTMDPNMLRSDVFIDFLKLVQLDTFSMATKKASLD 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
+LL +G+ + + +LTSD E VLE V+ + L +L+ YFSLFL++ ++G S V+KL
Sbjct: 121 ILLPDGRSIKIEILTSDTAERVLEVVSHNIGLCQELLEYFSLFLIQFCKEGRLSVVKKLA 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
+FELP VS+ S + K+ LRK Y D + D +M+ R ++L+Y Q + DIE+ W T
Sbjct: 181 DFELPCVSLRSSEVENCKVGLRKWYLDPSLDARLMDCRTAVDLIYMQAIQDIEKEWAKPT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
+ Q ++L+ LQ++ ++ +FL LA+ ++HYGY+R + C D PE C ++S GN+E+S
Sbjct: 241 EVQRQKLEDLQKEDNQTKFLELAREVQHYGYMRLEPCTCDHPEPGCQALLSVGNNEISCC 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
+ LP Q ++ F++ R++CW+V LEL F+Y +
Sbjct: 301 ITLPDNQTQDVIFQMDRVKCWQV---TFLGTLLDTDGPQQTLNQNLELRFQY-FEDSHWR 356
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKS 1353
W I + QA ++S CL+ M+ E MVK++
Sbjct: 357 WFVIYTKQAFLLSSCLKKMISEKMVKQA 384
>ref|NP_001092426.1| sorting nexin-27 [Bos taurus].
Length = 541
Score = 117 bits (294), Expect = 3e-26
Identities = 96/379 (25%), Positives = 163/379 (43%), Gaps = 5/379 (1%)
Frame = +1
Query: 229 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 408
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 174 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 233
Query: 409 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLEVLLSNGQKVLVNV 588
RR LE+Y++ V ++G S+ FL + L V L +G V V V
Sbjct: 234 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSES--DENYNGVSDVELRVALPDGTTVTVRV 291
Query: 589 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSL 765
+ T+ V +A+AAK+ + + YF+LF V SFVRKL E P+ + V +
Sbjct: 292 KKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVIN-----HSFVRKLAPNEFPHKLYVQNY 346
Query: 766 RSQEYKIVLRKSYWDSAYDDDVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSL 939
S L W +++++ +N + + + Q V D+++G+I +E+ QL+ L
Sbjct: 347 TSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQLQKL 405
Query: 940 QEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLRE 1119
E+ +L + +T Y + F C D K V+ + + L QL
Sbjct: 406 YEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLEN 464
Query: 1120 G--SFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQ 1293
+F M+ W E + FEY + + +WV I +P
Sbjct: 465 QVIAFEWDEMQRW------------------DTDEEGMAFCFEYARGEKKPRWVKIFTPY 506
Query: 1294 AIMMSICLQSMVDELMVKK 1350
M C + + EL +K
Sbjct: 507 FNYMHECFERVFCELKWRK 525
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,978,539
Number of extensions: 1898536
Number of successful extensions: 9115
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8976
Number of HSP's successfully gapped: 4
Length of query: 600
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 492
Effective length of database: 14,107,870
Effective search space: 6941072040
Effective search space used: 6941072040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012761
(1802 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540126.2| PREDICTED: similar to Sorting nexin-17 isoform ... 818 0.0
Alignment gi|XP_860993.1| PREDICTED: similar to Sorting nexin-17 isoform ... 703 0.0
Alignment gi|XP_860933.1| PREDICTED: similar to Sorting nexin-17 isoform ... 429 e-120
Alignment gi|XP_860740.1| PREDICTED: similar to Sorting nexin-17 isoform ... 429 e-120
Alignment gi|XP_860964.1| PREDICTED: similar to Sorting nexin-17 isoform ... 368 e-101
Alignment gi|XP_848854.1| PREDICTED: similar to sorting nexin 17 (predict... 290 4e-78
Alignment gi|XP_860780.1| PREDICTED: similar to Sorting nexin-17 isoform ... 227 3e-59
Alignment gi|XP_860902.1| PREDICTED: similar to Sorting nexin-17 isoform ... 177 4e-44
Alignment gi|XP_860869.1| PREDICTED: similar to sorting nexin 17 isoform ... 99 3e-41
Alignment gi|XP_540318.2| PREDICTED: similar to PDZ protein Mrt1 isoform ... 116 8e-26
>ref|XP_540126.2| PREDICTED: similar to Sorting nexin-17 isoform 2 [Canis familiaris].
Length = 470
Score = 818 bits (2112), Expect = 0.0
Identities = 423/470 (90%), Positives = 426/470 (90%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA SLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDG FSFVRKLQ
Sbjct: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGTFSFVRKLQ 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
Sbjct: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
LRLPGQQLREGSFRVTRMRCWRV EVRLELAFEYLMSKDRLQ
Sbjct: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 1449
WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
Sbjct: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 420
Query: 1450 SPDASRDTMXXXXXXXXXXXXRGIGTPSTDASASDVHGNFAFEGIGDEDL 1599
SPDASR++M RGIG+PSTDASASDVHGNFAFEGIGDEDL
Sbjct: 421 SPDASRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL 470
>ref|XP_860993.1| PREDICTED: similar to Sorting nexin-17 isoform 10 [Canis familiaris].
Length = 403
Score = 703 bits (1815), Expect = 0.0
Identities = 363/398 (91%), Positives = 364/398 (91%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA SLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDG FSFVRKLQ
Sbjct: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGTFSFVRKLQ 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
Sbjct: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
LRLPGQQLREGSFRVTRMRCWRV EVRLELAFEYLMSKDRLQ
Sbjct: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRR 1383
WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK+ R
Sbjct: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKVSNR 398
>ref|XP_860933.1| PREDICTED: similar to Sorting nexin-17 isoform 8 [Canis familiaris].
Length = 256
Score = 429 bits (1104), Expect = e-120
Identities = 222/256 (86%), Positives = 225/256 (87%)
Frame = +1
Query: 832 MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF 1011
MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF
Sbjct: 1 MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF 60
Query: 1012 DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXX 1191
DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRV
Sbjct: 61 DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGST 120
Query: 1192 XXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK 1371
EVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK
Sbjct: 121 SSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK 180
Query: 1372 MLRRRVGGTLRRSDSQQAVKSPPLLESPDASRDTMXXXXXXXXXXXXRGIGTPSTDASAS 1551
MLRRRVGGTLRRSDSQQAVKSPPLLESPDASR++M RGIG+PSTDASAS
Sbjct: 181 MLRRRVGGTLRRSDSQQAVKSPPLLESPDASRESMVKLSSKLSAVSLRGIGSPSTDASAS 240
Query: 1552 DVHGNFAFEGIGDEDL 1599
DVHGNFAFEGIGDEDL
Sbjct: 241 DVHGNFAFEGIGDEDL 256
>ref|XP_860740.1| PREDICTED: similar to Sorting nexin-17 isoform 3 [Canis familiaris].
Length = 256
Score = 429 bits (1104), Expect = e-120
Identities = 222/256 (86%), Positives = 225/256 (87%)
Frame = +1
Query: 832 MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF 1011
MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF
Sbjct: 1 MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRF 60
Query: 1012 DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXX 1191
DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRV
Sbjct: 61 DACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGST 120
Query: 1192 XXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK 1371
EVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK
Sbjct: 121 SSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRK 180
Query: 1372 MLRRRVGGTLRRSDSQQAVKSPPLLESPDASRDTMXXXXXXXXXXXXRGIGTPSTDASAS 1551
MLRRRVGGTLRRSDSQQAVKSPPLLESPDASR++M RGIG+PSTDASAS
Sbjct: 181 MLRRRVGGTLRRSDSQQAVKSPPLLESPDASRESMVKLSSKLSAVSLRGIGSPSTDASAS 240
Query: 1552 DVHGNFAFEGIGDEDL 1599
DVHGNFAFEGIGDEDL
Sbjct: 241 DVHGNFAFEGIGDEDL 256
>ref|XP_860964.1| PREDICTED: similar to Sorting nexin-17 isoform 9 [Canis
familiaris].
Length = 266
Score = 368 bits (944), Expect = e-101
Identities = 190/208 (91%), Positives = 192/208 (92%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA SLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDG FSFVRKLQ
Sbjct: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGTFSFVRKLQ 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDS 813
EFELPYVSVTSLRSQEYKIVLRK + +
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKRQYQT 208
Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 989 GTMATCALMPVWLTSRRRTVRWW 1057
GTMATCALMPVWLTS+RRTV WW
Sbjct: 244 GTMATCALMPVWLTSQRRTVPWW 266
>ref|XP_848854.1| PREDICTED: similar to sorting nexin 17 (predicted) [Canis
familiaris].
Length = 402
Score = 290 bits (741), Expect = 4e-78
Identities = 154/386 (39%), Positives = 235/386 (60%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHF IP ++ R GG YV Y+++++G L CRVRYSQL +EQLR+ +G N LP FP
Sbjct: 3 MHFCIPVSQQRLDRLGGR-YVLYSVYLDGYLFCRVRYSQLHRWNEQLRRVFG-NCLPPFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PK ++T + +RR+QLE+Y+Q V DP + S+ F FL+ SL+
Sbjct: 61 PKYYLAMTASMANERRDQLEQYLQNVTVDPNMLRSDVFVDFLKLVQLDTFSITTKTASLD 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
+ L +G+ + V +LTSD E VLE V+ K+ L +L+GYF LFL++ ++G FS ++KL
Sbjct: 121 IFLPDGRNIQVEILTSDTAERVLEVVSHKIGLCQELLGYFGLFLIQCCKEGKFSVMKKLV 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
+FELPYVS+ S + ++ K+ LRK Y D + D +M++ + L+Y Q V D+E+ W T
Sbjct: 181 DFELPYVSLQSAKVEDCKVGLRKWYMDPSLDSVLMDSAAAVALIYMQAVQDMEKEWAKPT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
+ Q ++L++LQ++ ++ +FL L+Q +RHYG+L+ D C D+PE C V+S GN+E+S
Sbjct: 241 QVQRQKLEALQKEDNQTKFLELSQEVRHYGFLQLDPCTCDYPEPGCRAVLSVGNNEISCC 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
+ LPG Q +E F++ R++CW+V LEL F+Y R Q
Sbjct: 301 ITLPGNQTQEIIFQMNRVKCWQV---TFLGSLLDMDGPQRTLNQNLELRFQY-SEDSRWQ 356
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVK 1347
W I + QA ++S CL+ M+ E MVK
Sbjct: 357 WFVIYTKQAFLLSSCLKKMISEKMVK 382
>ref|XP_860780.1| PREDICTED: similar to Sorting nexin-17 isoform 4 [Canis familiaris].
Length = 153
Score = 227 bits (578), Expect = 3e-59
Identities = 119/153 (77%), Positives = 122/153 (79%)
Frame = +1
Query: 1141 MRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQ 1320
MRCWRV EVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQ
Sbjct: 1 MRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQ 60
Query: 1321 SMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDASRDTMXXXXXXXX 1500
SMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDASR++M
Sbjct: 61 SMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDASRESMVKLSSKLS 120
Query: 1501 XXXXRGIGTPSTDASASDVHGNFAFEGIGDEDL 1599
RGIG+PSTDASASDVHGNFAFEGIGDEDL
Sbjct: 121 AVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL 153
>ref|XP_860902.1| PREDICTED: similar to Sorting nexin-17 isoform 7 [Canis
familiaris].
Length = 87
Score = 177 bits (448), Expect = 4e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAV 447
PKKLFSLTPAEVEQRREQLEKYMQAV
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAV 86
>ref|XP_860869.1| PREDICTED: similar to sorting nexin 17 isoform 6 [Canis
familiaris].
Length = 94
Score = 99.4 bits (246), Expect(2) = 3e-41
Identities = 46/51 (90%), Positives = 48/51 (94%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEY 342
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQ + +
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQFGRTH 51
Score = 89.7 bits (221), Expect(2) = 3e-41
Identities = 38/47 (80%), Positives = 40/47 (85%)
Frame = +2
Query: 449 GKTHCLGAVRPSIVSCVEHNRRHSRYPQKRSPWKCYSATGRKFWSTC 589
G+THCLGAVRP I SCV HNRRHSR PQ+R PWKC SATGRKFWS C
Sbjct: 48 GRTHCLGAVRPLIASCVGHNRRHSRSPQRRFPWKCCSATGRKFWSMC 94
>ref|XP_540318.2| PREDICTED: similar to PDZ protein Mrt1 isoform 1 [Canis familiaris].
Length = 527
Score = 116 bits (290), Expect = 8e-26
Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 5/379 (1%)
Frame = +1
Query: 229 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 408
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 160 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 219
Query: 409 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLEVLLSNGQKVLVNV 588
RR LE+Y++ V ++G S+ FL + L V L +G V V V
Sbjct: 220 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSES--DENYNGVSDVELRVALPDGTTVTVRV 277
Query: 589 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSL 765
+ T+ V +A+AA++ + + YF+LF V SFVRKL E P+ + V +
Sbjct: 278 KKNSTTDQVYQAIAAEVGMDSTTVNYFALFEVIN-----HSFVRKLAPNEFPHKLYVQNY 332
Query: 766 RSQEYKIVLRKSYWDSAYDDDVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSL 939
S L W +++++ +N + + + Q V D+++G+I +E+ QL+ L
Sbjct: 333 TSAVPGTCLAIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQLQKL 391
Query: 940 QEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLRE 1119
E+ +L + +T Y + F C D K V+ + + L QL
Sbjct: 392 YEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLEN 450
Query: 1120 G--SFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQ 1293
+F M+ W E + FEY + + +WV I +P
Sbjct: 451 QVIAFEWDEMQRW------------------DTDEEGMAFCFEYARGEKKPRWVKIFTPY 492
Query: 1294 AIMMSICLQSMVDELMVKK 1350
M C + + EL +K
Sbjct: 493 FNYMHECFERVFCELKWRK 511
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,029,333
Number of extensions: 1974698
Number of successful extensions: 9315
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 9189
Number of HSP's successfully gapped: 15
Length of query: 600
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 491
Effective length of database: 15,240,880
Effective search space: 7483272080
Effective search space used: 7483272080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012761
(1802 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924965.1| PREDICTED: sorting nexin-31 [Sus scrofa]. 253 3e-67
Alignment gi|XP_003125809.1| PREDICTED: sorting nexin-27-like [Sus scrofa]. 118 1e-26
>ref|XP_001924965.1| PREDICTED: sorting nexin-31 [Sus scrofa].
Length = 423
Score = 253 bits (645), Expect = 3e-67
Identities = 143/386 (37%), Positives = 218/386 (56%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHF IP ++ R D+ G YV Y+++++G L CRVRYSQL +EQLR+ +G N LP+FP
Sbjct: 3 MHFCIPVSQQRF-DALGGRYVLYSVYLDGFLFCRVRYSQLHRWNEQLRRVFG-NCLPSFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PK ++T + ++RREQLE+Y+Q V DP + S+ F FL+ L+
Sbjct: 61 PKYYLTMTTSMADERREQLEQYLQNVTVDPNMLRSDVFVDFLKLVQLDTFSITTKKVPLD 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLL + + + V +LTSD E VLE V+ K+ L +L+GYF LFL+R ++G S ++KL
Sbjct: 121 VLLPDERSIKVEILTSDTAERVLEVVSHKIGLRRELVGYFGLFLIRFGKEGKLSVMKKLV 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
+FELPYVS+ S + + K+ LRK Y D + D +M+ + ++L+Y Q
Sbjct: 181 DFELPYVSLRSSQVENCKVGLRKWYLDPSLDSRLMDCKAAVDLIYMQ------------- 227
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
R S ++ ++FL L++ +RHYGY++ D C D+PE C ++S GN+E+S
Sbjct: 228 ----RSFASSTPYLTLEQFLELSRGIRHYGYIQLDPCTCDYPEPGCGALLSVGNNEISCC 283
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
+ LP Q ++ F++ R++CW+V LEL F+Y R Q
Sbjct: 284 VTLPDNQTQDVIFQMNRVKCWQV---TFLGTLLDRDGPQQTLNQNLELRFQY-SEGSRWQ 339
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVK 1347
W I + QA +S CL+ M+ E M K
Sbjct: 340 WFVIYTKQAFWLSSCLKKMISEKMAK 365
>ref|XP_003125809.1| PREDICTED: sorting nexin-27-like [Sus scrofa].
Length = 541
Score = 118 bits (295), Expect = 1e-26
Identities = 96/379 (25%), Positives = 163/379 (43%), Gaps = 5/379 (1%)
Frame = +1
Query: 229 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 408
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 174 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 233
Query: 409 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLEVLLSNGQKVLVNV 588
RR LE+Y++ V ++G S+ FL + L V L +G V V V
Sbjct: 234 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSES--DENYNGVSDVELRVALPDGTTVTVRV 291
Query: 589 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSL 765
+ T+ V +A+AAK+ + + YF+LF V SFVRKL E P+ + V +
Sbjct: 292 KKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVIN-----HSFVRKLAPNEFPHKLYVQNY 346
Query: 766 RSQEYKIVLRKSYWDSAYDDDVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSL 939
S L W +++++ +N + + + Q V D+++G+I +E+ QL+ L
Sbjct: 347 TSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQLQKL 405
Query: 940 QEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLRE 1119
E+ +L + +T Y + F C D K V+ + + L QL
Sbjct: 406 YEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLEN 464
Query: 1120 G--SFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQ 1293
+F M+ W E + FEY + + +WV I +P
Sbjct: 465 QVIAFEWDEMQRW------------------DTDEEGMAFCFEYARGEKKPRWVKIFTPY 506
Query: 1294 AIMMSICLQSMVDELMVKK 1350
M C + + EL +K
Sbjct: 507 FNYMHECFERVFCELKWRK 525
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,242,055
Number of extensions: 1229877
Number of successful extensions: 5889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5782
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 495
Effective length of database: 8,729,747
Effective search space: 4321224765
Effective search space used: 4321224765
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012761
(1802 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_710147.1| sorting nexin-17 [Mus musculus]. 811 0.0
Alignment gi|NP_079988.3| sorting nexin-31 [Mus musculus]. 285 6e-77
Alignment gi|NP_001075953.1| sorting nexin-27 isoform 1 [Mus musculus]. 118 1e-26
Alignment gi|NP_083997.1| sorting nexin-27 isoform 2 [Mus musculus]. 118 1e-26
>ref|NP_710147.1| sorting nexin-17 [Mus musculus].
Length = 470
Score = 811 bits (2094), Expect = 0.0
Identities = 420/470 (89%), Positives = 424/470 (90%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANV+PAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVVPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA SLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLLSNGQKVLV VLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
Sbjct: 121 VLLSNGQKVLVTVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIE GWILVT
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
Sbjct: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
LRLPGQQLREGSFRVTRMRCWRV EVRLELAFEYLMSKDRLQ
Sbjct: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPSRGRGEVRLELAFEYLMSKDRLQ 360
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 1449
WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
Sbjct: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 420
Query: 1450 SPDASRDTMXXXXXXXXXXXXRGIGTPSTDASASDVHGNFAFEGIGDEDL 1599
SPDASR++M RGIG+PSTDASAS VHGNFAFEGIGDEDL
Sbjct: 421 SPDASRESMVKLSSKLSAVSLRGIGSPSTDASASAVHGNFAFEGIGDEDL 470
>ref|NP_079988.3| sorting nexin-31 [Mus musculus].
Length = 438
Score = 285 bits (730), Expect = 6e-77
Identities = 164/415 (39%), Positives = 237/415 (57%), Gaps = 1/415 (0%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHF IP ++ R D+ G YV Y+++++G L C+VRYSQL EQLR+ +G N LP FP
Sbjct: 3 MHFCIPVSQQRP-DALGGRYVLYSVYLDGFLFCKVRYSQLHRWDEQLRRVFG-NCLPPFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PK ++T A E+RR+QLE+Y+Q V DP + S+ F FL L
Sbjct: 61 PKYYLAMTTAMAEERRDQLERYLQNVTADPRVTRSDVFTEFLTLVQLHTLNITIQNVELA 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
V L +G+ + V LTSD E VLE +A KL L DL+GYF LFL++ +G S V+KL
Sbjct: 121 VFLPDGRSIKVEGLTSDTAERVLEVMAHKLGLQPDLVGYFGLFLIQCFPEGKLSVVKKLA 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
+FELPY S+ S + KI LRK Y D A D +M+ R +LLY Q V DIE+ W+ T
Sbjct: 181 DFELPYTSLQSSEMENCKIGLRKWYLDPALDSMLMDCRAAGDLLYMQAVQDIEKEWMKPT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
+ Q +LK+LQ+K ++ +FL L+Q +RHYGY++ D C + PE C +S GN+E+S
Sbjct: 241 QAQREELKALQKKENQTKFLELSQEVRHYGYVQLDPCTCNHPEPGCGAQLSIGNNEISCC 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRL- 1266
+ LP Q+++ +F+++R++CW+V LEL F+Y S+D
Sbjct: 301 ITLPNGQIQDIAFQMSRVKCWQV---TFLGTLLDTDGPQRTLNQNLELRFQY--SEDSCQ 355
Query: 1267 QWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVK 1431
QW I + QA +S CL+ M+ E M K + S + G ++ SQ + K
Sbjct: 356 QWFVIYTKQAFFLSSCLKKMISERMTKLTEQSPEMQIEVPEQGRSKKHPSQPSQK 410
>ref|NP_001075953.1| sorting nexin-27 isoform 1 [Mus musculus].
Length = 539
Score = 118 bits (296), Expect = 1e-26
Identities = 97/379 (25%), Positives = 163/379 (43%), Gaps = 5/379 (1%)
Frame = +1
Query: 229 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 408
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 172 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 231
Query: 409 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLEVLLSNGQKVLVNV 588
RR LE+Y++ V ++G S+ FL + L V L +G V V V
Sbjct: 232 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSES--DENYNGVSDVELRVALPDGTTVTVRV 289
Query: 589 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSL 765
+ T+ V +A+AAK+ + + YF+LF V SFVRKL E P+ + V +
Sbjct: 290 KKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVIN-----HSFVRKLAPNEFPHKLYVQNY 344
Query: 766 RSQEYKIVLRKSYWDSAYDDDVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSL 939
S L W +++V+ +N + + + Q V D+++G+I +E+ QL+ L
Sbjct: 345 TSAVPGTCLTIRKWLFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQLQKL 403
Query: 940 QEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLRE 1119
E+ +L + +T Y + F C D K V+ + + L QL
Sbjct: 404 HEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLEN 462
Query: 1120 G--SFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQ 1293
+F M+ W E + FEY + + +WV I +P
Sbjct: 463 QVIAFEWDEMQRW------------------DTDEEGMAFCFEYARGEKKPRWVKIFTPY 504
Query: 1294 AIMMSICLQSMVDELMVKK 1350
M C + + EL +K
Sbjct: 505 FNYMHECFERVFCELKWRK 523
>ref|NP_083997.1| sorting nexin-27 isoform 2 [Mus musculus].
Length = 526
Score = 118 bits (296), Expect = 1e-26
Identities = 97/379 (25%), Positives = 163/379 (43%), Gaps = 5/379 (1%)
Frame = +1
Query: 229 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 408
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 172 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 231
Query: 409 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLEVLLSNGQKVLVNV 588
RR LE+Y++ V ++G S+ FL + L V L +G V V V
Sbjct: 232 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSES--DENYNGVSDVELRVALPDGTTVTVRV 289
Query: 589 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSL 765
+ T+ V +A+AAK+ + + YF+LF V SFVRKL E P+ + V +
Sbjct: 290 KKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVIN-----HSFVRKLAPNEFPHKLYVQNY 344
Query: 766 RSQEYKIVLRKSYWDSAYDDDVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSL 939
S L W +++V+ +N + + + Q V D+++G+I +E+ QL+ L
Sbjct: 345 TSAVPGTCLTIRKWLFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQLQKL 403
Query: 940 QEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLRE 1119
E+ +L + +T Y + F C D K V+ + + L QL
Sbjct: 404 HEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLEN 462
Query: 1120 G--SFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTITSPQ 1293
+F M+ W E + FEY + + +WV I +P
Sbjct: 463 QVIAFEWDEMQRW------------------DTDEEGMAFCFEYARGEKKPRWVKIFTPY 504
Query: 1294 AIMMSICLQSMVDELMVKK 1350
M C + + EL +K
Sbjct: 505 FNYMHECFERVFCELKWRK 523
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,771,411
Number of extensions: 1586949
Number of successful extensions: 7031
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6920
Number of HSP's successfully gapped: 4
Length of query: 600
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 493
Effective length of database: 12,403,707
Effective search space: 6115027551
Effective search space used: 6115027551
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012761
(1802 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055563.1| sorting nexin-17 [Homo sapiens]. 818 0.0
Alignment gi|NP_689841.3| sorting nexin-31 [Homo sapiens]. 295 1e-79
Alignment gi|NP_112180.4| sorting nexin-27 [Homo sapiens]. 117 3e-26
>ref|NP_055563.1| sorting nexin-17 [Homo sapiens].
Length = 470
Score = 818 bits (2113), Expect = 0.0
Identities = 423/470 (90%), Positives = 427/470 (90%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA SLE
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
Sbjct: 121 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
Sbjct: 181 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
Sbjct: 241 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQ 1269
LRLPGQQLREGSFRVTRMRCWRV EVRLELAFEYLMSKDRLQ
Sbjct: 301 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ 360
Query: 1270 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 1449
WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
Sbjct: 361 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE 420
Query: 1450 SPDASRDTMXXXXXXXXXXXXRGIGTPSTDASASDVHGNFAFEGIGDEDL 1599
SPDA+R++M RGIG+PSTDASASDVHGNFAFEGIGDEDL
Sbjct: 421 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL 470
>ref|NP_689841.3| sorting nexin-31 [Homo sapiens].
Length = 440
Score = 295 bits (754), Expect = 1e-79
Identities = 160/387 (41%), Positives = 237/387 (61%), Gaps = 1/387 (0%)
Frame = +1
Query: 190 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 369
MHF IP ++ RS D+ G YV Y++H++G L CRVRYSQL G +EQLR+ +G N LP FP
Sbjct: 3 MHFCIPVSQQRS-DALGGRYVLYSVHLDGFLFCRVRYSQLHGWNEQLRRVFG-NCLPPFP 60
Query: 370 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLE 549
PK ++T A ++RR+QLE+Y+Q V DP + S+ F FL+ A L+
Sbjct: 61 PKYYLAMTTAMADERRDQLEQYLQNVTMDPNVLRSDVFVEFLKLAQLNTFDIATKKAYLD 120
Query: 550 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ 729
+ L N Q + + ++TSD E VLE V+ K+ L +L+GYF LFL+R ++G S V+KL
Sbjct: 121 IFLPNEQSIRIEIITSDTAERVLEVVSHKIGLCRELLGYFGLFLIRFGKEGKLSVVKKLA 180
Query: 730 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT 909
+FELPYVS+ S + K+ LRK Y + D +M+ RV ++LLY Q + DIE+GW T
Sbjct: 181 DFELPYVSLGSSEVENCKVGLRKWYMAPSLDSVLMDCRVAVDLLYMQAIQDIEKGWAKPT 240
Query: 910 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ 1089
+ Q ++L++ Q++ S+ +FL LA+ +RHYGYL+ D C D+PE V+S GN+E+S
Sbjct: 241 QAQRQKLEAFQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEISCC 300
Query: 1090 LRLPGQQLREGSFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRL- 1266
+ LP Q ++ F+++R++CW+V LEL F+Y S+D
Sbjct: 301 ITLPDSQTQDIVFQMSRVKCWQV---TFLGTLLDTDGPQRTLNQNLELRFQY--SEDSCW 355
Query: 1267 QWVTITSPQAIMMSICLQSMVDELMVK 1347
QW I + QA ++S CL+ M+ E MVK
Sbjct: 356 QWFVIYTKQAFLLSSCLKKMISEKMVK 382
>ref|NP_112180.4| sorting nexin-27 [Homo sapiens].
Length = 528
Score = 117 bits (294), Expect = 3e-26
Identities = 97/383 (25%), Positives = 164/383 (42%), Gaps = 9/383 (2%)
Frame = +1
Query: 229 DSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVE 408
+ G +V YN+++ G C RY + LH+ L++E+ P P K FSL+ +++
Sbjct: 174 EQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLD 233
Query: 409 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAXXXXXXXXXXXXSLEVLLSNGQKVLVNV 588
RR LE+Y++ V ++G S+ FL + L V L +G V V V
Sbjct: 234 ARRRGLEEYLEKVCSIRVIGESDIMQEFLSES--DENYNGVSDVELRVALPDGTTVTVRV 291
Query: 589 LTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVTSLR 768
+ T+ V +A+AAK+ + + YF+LF E + SFVRKL E P+ L
Sbjct: 292 KKNSTTDQVYQAIAAKVGMDSTTVNYFALF-----EVISHSFVRKLAPNEFPH----KLY 342
Query: 769 SQEYK-------IVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQ 927
Q Y + +RK + + + + +N + + + Q V D+++G+I +E+ Q
Sbjct: 343 IQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYI-KAEEKSYQ 401
Query: 928 LKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQ 1107
L+ L E+ +L + +T Y + F C D K V+ + + L
Sbjct: 402 LQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKG-HVITAISITHFKLHACTEEG 460
Query: 1108 QLREG--SFRVTRMRCWRVXXXXXXXXXXXXXXXXXXXEVRLELAFEYLMSKDRLQWVTI 1281
QL +F M+ W E + FEY + + +WV I
Sbjct: 461 QLENQVIAFEWDEMQRW------------------DTDEEGMAFCFEYARGEKKPRWVKI 502
Query: 1282 TSPQAIMMSICLQSMVDELMVKK 1350
+P M C + + EL +K
Sbjct: 503 FTPYFNYMHECFERVFCELKWRK 525
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,518,677
Number of extensions: 1915801
Number of successful extensions: 8748
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8627
Number of HSP's successfully gapped: 3
Length of query: 600
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 492
Effective length of database: 14,737,052
Effective search space: 7250629584
Effective search space used: 7250629584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012761
(1802 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 577 e-162
>Sscrofa_Chr03
|| Length = 144787322
Score = 577 bits (291), Expect = e-162
Identities = 311/315 (98%), Gaps = 2/315 (0%)
Strand = Plus / Plus
Query: 1489 agcaagctgagtgccgtaagcttgcggggaattggcactcccagtacagatgccagtgcc 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118698132 agcaagctgagtgccgtaagcttgcggggaattggcactcccagtacagatgccagtgcc 118698191
Query: 1549 agtgatgtccacggcaatttcgccttcgagggcattggagatgaggatctgtgatctcca 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118698192 agtgatgtccacggcaatttcgccttcgagggcattggagatgaggatctgtgatctcca 118698251
Query: 1609 gtgcccggatgtctgccctctaccctggaggagtgttcagaaacttgccctgtgcctgta 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118698252 gtgcccggatgtctgccctctaccctggaggagtgttcagaaacttgccctgtgcctgta 118698311
Query: 1669 tcccccaagctgggggtattttcctttctattgtccccttttctcctcttggccaggggc 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118698312 tcccccaagctgggggtattttcctttctattgtccccttttctcctcttggccaggggc 118698371
Query: 1729 ctcctaaccca-ctacccttctcccccagggctggctacacaaaaaatttgcccctctct 1787
||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 118698372 ctcctaacccacctacccttctcccccagggctggctacacaaaaga-ttgcccctctct 118698430
Query: 1788 tttcaaagctggccc 1802
||||| |||||||||
Sbjct: 118698431 tttcagagctggccc 118698445
Score = 446 bits (225), Expect = e-122
Identities = 244/253 (96%)
Strand = Plus / Plus
Query: 1 ggattccccgggaagctgcgccccagagcggacgtctccagtccttccctcctcggatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118692554 ggattccccgggaagctgcgccccagagcggacgtctccagtccttccctcctcggatct 118692613
Query: 61 caacggccgnnnnnnnngcccaaaaatggcgagcgaagcttcggggacgcgctgaatagc 120
||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118692614 caacggccgccccccccgcccaaaaatggcgagcgaagcttcggggacgcgctgagtagc 118692673
Query: 121 ggaggcgagcgtgcaaagccactgcggccctcacagttcggagcccggccgggccctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118692674 ggaggcgagcgtgcaaagccactgcggccctcacagttcggagcccggccgggccctgcc 118692733
Query: 181 gcagggaacatgcacttttccattcctgaaaccgagtcccgcagcggggacagcggcggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118692734 gcagggaacatgcacttttccattcctgaaaccgagtcccgcagcggggacagcggcggc 118692793
Query: 241 tccgcctacgtgg 253
|||||||||||||
Sbjct: 118692794 tccgcctacgtgg 118692806
Score = 406 bits (205), Expect = e-110
Identities = 208/209 (99%)
Strand = Plus / Plus
Query: 962 agttcctgcggctggcgcagacgctgcggcactatggctacttgcgctttgatgcctgtg 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118696999 agttcctgcggctggcgcagacgctgcggcactatggctacttgcgctttgatgcctgtg 118697058
Query: 1022 tggctgacttcccggagaaggactgtccggtggtggtgagcgcaggcaatagtgagctca 1081
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 118697059 tggctgacttcccggagaaggactgcccggtggtggtgagcgcaggcaatagtgagctca 118697118
Query: 1082 gcctccagctccgcctgcctggccagcagctccgtgaaggctccttccgggtcacccgca 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118697119 gcctccagctccgcctgcctggccagcagctccgtgaaggctccttccgggtcacccgca 118697178
Query: 1142 tgcggtgctggcgggtcacctcctctgtg 1170
|||||||||||||||||||||||||||||
Sbjct: 118697179 tgcggtgctggcgggtcacctcctctgtg 118697207
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 1168 gtgccgctgcccagcgggggcacaagcagcccaggccggggccggggcgaggtgcgcctg 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118697340 gtgccgctgcccagcgggggcacaagcagcccaggccggggccggggcgaggtgcgcctg 118697399
Query: 1228 gaactggctttcgaatacctcatgagcaaggaccggctacagtgggtgaccatcaccagc 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118697400 gaactggctttcgaatacctcatgagcaaggaccggctacagtgggtgaccatcaccagc 118697459
Query: 1288 ccccagg 1294
|||||||
Sbjct: 118697460 ccccagg 118697466
Score = 238 bits (120), Expect = 9e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 326 agcttcggaaggaatatggggccaatgtgcttcctgcattccccccaaagaagcttttct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118694366 agcttcggaaggaatatggggccaatgtgcttcctgcattccccccaaagaagcttttct 118694425
Query: 386 ctctgacccctgctgaggtagaacagagaagagagcagttagagaagtacatgcaagccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118694426 ctctgacccctgctgaggtagaacagagaagagagcagttagagaagtacatgcaagccg 118694485
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 508 caggagacacagcaggtacccacagaagaggtctccttggaagtgctactcagcaacggg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118695656 caggagacacagcaggtacccacagaagaggtctccttggaagtgctactcagcaacggg 118695715
Query: 568 cagaaagttctggtcaacgtgctaacttcagatcaaactgaggatgtcctggagg 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118695716 cagaaagttctggtcaacgtgctaacttcagatcaaactgaggatgtcctggagg 118695770
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 869 agacggtatcagacatcgagcgtgggtggatcctggtcaccaaggagcagcaccggcagc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118696812 agacggtatcagacatcgagcgtgggtggatcctggtcaccaaggagcagcaccggcagc 118696871
Query: 929 tcaaatctttgcaggagaaggtctccaagaaggag 963
|||||||||||||||||||||||||||||||||||
Sbjct: 118696872 tcaaatctttgcaggagaaggtctccaagaaggag 118696906
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 620 aggctgtggctgcaaagctggatcttccagatgacttgatcggatacttcagtctctttc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118695868 aggctgtggctgcaaagctggatcttccagatgacttgatcggatacttcagtctctttc 118695927
Query: 680 tagttcgagaaaaagaggatggagccttttcat 712
|||||||||||||||||||||||||||||||||
Sbjct: 118695928 tagttcgagaaaaagaggatggagccttttcat 118695960
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 713 ttgtacggaagttgcaagagtttgagctgccttatgtgtctgttaccagtcttcgaagtc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118696114 ttgtacggaagttgcaagagtttgagctgccttatgtgtctgttaccagtcttcgaagtc 118696173
Query: 773 aagagtataagattgtgctaaggaagag 800
||||||||||||||||||||||||||||
Sbjct: 118696174 aagagtataagattgtgctaaggaagag 118696201
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1286 gcccccaggctatcatgatgagcatctgcctgcagtccatggtagatgaactgatggtga 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118697620 gcccccaggctatcatgatgagcatctgcctgcagtccatggtagatgaactgatggtga 118697679
Query: 1346 agaaatccggtggcagtatcaggaag 1371
||||||||||||||||||||||||||
Sbjct: 118697680 agaaatccggtggcagtatcaggaag 118697705
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1370 agatgctgcgccggcgggtcgggggcaccctgagacgctcagacagccaacaggcagtca 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118697834 agatgctgcgccggcgggtcgggggcaccctgagacgctcagacagccaacaggcagtca 118697893
Query: 1430 agtccccaccgctgcttg 1447
||||||||||||||||||
Sbjct: 118697894 agtccccaccgctgcttg 118697911
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 252 ggcctataacattcacgtgaatggagtcctgcactgtcgagtgcgctacagtcagctcct 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118693268 ggcctataacattcacgtgaatggagtcctgcactgtcgagtgcgctacagtcagctcct 118693327
Query: 312 ggggctgcacgagcag 327
||||||||||||||||
Sbjct: 118693328 ggggctgcacgagcag 118693343
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 799 agttattgggactctgcctatgatgacgatgtcatggagaaccgggttggcctgaacctg 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118696444 agttattgggactctgcctatgatgacgatgtcatggagaaccgggttggcctgaacctg 118696503
Query: 859 ctttatgctcag 870
||||||||||||
Sbjct: 118696504 ctttatgctcag 118696515
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 1447 gagtcacctgacgccagccgggataccatggtcaaactctca 1488
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Sbjct: 118697997 gagtcacctgacgccagccgggataccatggtcaaactctca 118698038
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,926,514
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 15
Length of query: 1802
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1780
Effective length of database: 2,808,408,574
Effective search space: 4998967261720
Effective search space used: 4998967261720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)