Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012764
(1010 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776932.1| 2-oxoisovalerate dehydrogenase subunit beta, mi... 514 e-146
Alignment gi|NP_001030512.2| pyruvate dehydrogenase E1 component subunit ... 134 1e-31
>ref|NP_776932.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor
[Bos taurus].
Length = 392
Score = 514 bits (1324), Expect = e-146
Identities = 254/290 (87%), Positives = 260/290 (89%)
Frame = +3
Query: 141 EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS 320
+G W L G GL RGFLQ ASA G AAQ+RQVAHFTFQPDPE VEYGQTQKMNLFQAVTS
Sbjct: 20 DGPWRRLCGAGLSRGFLQSASAYGAAAQRRQVAHFTFQPDPEPVEYGQTQKMNLFQAVTS 79
Query: 321 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXXXXXXX 500
ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQ
Sbjct: 80 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT 139
Query: 501 XXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 680
EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS
Sbjct: 140 GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 199
Query: 681 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP 860
PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVP+EPY IP
Sbjct: 200 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIP 259
Query: 861 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
LSQAEVIQEGSDVTLVAWGTQVHVIREV +MA+EKLGVSCEVIDLRTI+P
Sbjct: 260 LSQAEVIQEGSDVTLVAWGTQVHVIREVDAMAQEKLGVSCEVIDLRTILP 309
>ref|NP_001030512.2| pyruvate dehydrogenase E1 component subunit beta, mitochondrial
precursor [Bos taurus].
Length = 359
Score = 134 bits (338), Expect = 1e-31
Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 4/239 (1%)
Frame = +3
Query: 306 QAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXX 482
+A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIA 96
Query: 483 XXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGA 662
E ++ A DQ++N AAK Y SG L + + R P G A
Sbjct: 97 VGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSV-PIVFRGPNGASAGVA 155
Query: 663 LYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---Q 833
HSQ A++ HCPG+KVV P S AKGL+ S I D NP + E +++Y E +
Sbjct: 156 AQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSE 215
Query: 834 VPIEPYTIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
+ + IP+ +A++ ++G+ VT+VA V E A++ K G+ CEVI+LRTI P
Sbjct: 216 AQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVL-SKEGIECEVINLRTIRP 273
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,450,884
Number of extensions: 1203399
Number of successful extensions: 5044
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5024
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012764
(1010 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532213.2| PREDICTED: similar to 2-oxoisovalerate dehydrog... 501 e-142
Alignment gi|XP_856518.1| PREDICTED: similar to Pyruvate dehydrogenase E1... 131 9e-31
Alignment gi|XP_533778.2| PREDICTED: similar to Pyruvate dehydrogenase E1... 130 2e-30
>ref|XP_532213.2| PREDICTED: similar to 2-oxoisovalerate dehydrogenase beta subunit,
mitochondrial precursor (Branched-chain alpha-keto acid
dehydrogenase E1 component beta chain) (BCKDH E1-beta)
[Canis familiaris].
Length = 387
Score = 501 bits (1291), Expect = e-142
Identities = 249/290 (85%), Positives = 256/290 (88%)
Frame = +3
Query: 141 EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS 320
EG W L G GL Q ASA GDAAQ+R VAHFTFQPDPE EYGQTQKMNLFQA+TS
Sbjct: 20 EGQWCRLRGAGL-----QAASAAGDAAQRRHVAHFTFQPDPEPQEYGQTQKMNLFQAITS 74
Query: 321 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXXXXXXX 500
ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQ
Sbjct: 75 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT 134
Query: 501 XXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 680
EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR+PWGCVGHGALYHSQS
Sbjct: 135 GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQS 194
Query: 681 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP 860
PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIED+NPCIFFEPKILYRAAVEQVP+EPY IP
Sbjct: 195 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDRNPCIFFEPKILYRAAVEQVPVEPYNIP 254
Query: 861 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
LSQAEVIQEGSDVTLVAWGTQVHVIREVASMA+EKLGVSCEVIDLRTI+P
Sbjct: 255 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTILP 304
>ref|XP_856518.1| PREDICTED: similar to Pyruvate dehydrogenase E1 component beta
subunit, mitochondrial precursor (PDHE1-B) isoform 4
[Canis familiaris].
Length = 341
Score = 131 bits (330), Expect = 9e-31
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 4/245 (1%)
Frame = +3
Query: 288 QKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQ 464
+++ + +A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 13 EQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 72
Query: 465 XXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWG 644
E ++ A DQ++N AAK Y SG L + R P G
Sbjct: 73 GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNG 131
Query: 645 CVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAA 824
A HSQ A++ HCPG+KVV P + AKGL+ S I D NP + E +++Y
Sbjct: 132 ASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP 191
Query: 825 VE---QVPIEPYTIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDL 995
E + + + IP+ +A++ ++G+ +T+VA V E A++ K G+ CEVI++
Sbjct: 192 FEFPSEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAATVL-SKEGIECEVINM 250
Query: 996 RTIIP 1010
RTI P
Sbjct: 251 RTIRP 255
>ref|XP_533778.2| PREDICTED: similar to Pyruvate dehydrogenase E1 component beta
subunit, mitochondrial precursor (PDHE1-B) isoform 1
[Canis familiaris].
Length = 359
Score = 130 bits (328), Expect = 2e-30
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 4/239 (1%)
Frame = +3
Query: 306 QAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXX 482
+A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIA 96
Query: 483 XXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGA 662
E ++ A DQ++N AAK Y SG L + R P G A
Sbjct: 97 VGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVA 155
Query: 663 LYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---Q 833
HSQ A++ HCPG+KVV P + AKGL+ S I D NP + E +++Y E +
Sbjct: 156 AQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPSE 215
Query: 834 VPIEPYTIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
+ + IP+ +A++ ++G+ +T+VA V E A++ K G+ CEVI++RTI P
Sbjct: 216 AQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAATVL-SKEGIECEVINMRTIRP 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,204,496
Number of extensions: 1234765
Number of successful extensions: 5154
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5116
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012764
(1010 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116691.1| 2-oxoisovalerate dehydrogenase subunit beta,... 553 e-158
Alignment gi|XP_003132325.1| PREDICTED: pyruvate dehydrogenase E1 compone... 131 5e-31
>ref|NP_001116691.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Sus
scrofa].
Length = 396
Score = 553 bits (1426), Expect = e-158
Identities = 272/290 (93%), Positives = 272/290 (93%)
Frame = +3
Query: 141 EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS 320
EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS
Sbjct: 24 EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS 83
Query: 321 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXXXXXXX 500
ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQ
Sbjct: 84 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT 143
Query: 501 XXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 680
EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS
Sbjct: 144 GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 203
Query: 681 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP 860
PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP
Sbjct: 204 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP 263
Query: 861 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP
Sbjct: 264 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 313
>ref|XP_003132325.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta,
mitochondrial-like [Sus scrofa].
Length = 360
Score = 131 bits (330), Expect = 5e-31
Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 4/238 (1%)
Frame = +3
Query: 309 AVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXX 485
A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 39 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAV 98
Query: 486 XXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGAL 665
E ++ A DQ++N AAK Y SG L + + R P G A
Sbjct: 99 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSV-PIVFRGPNGASAGVAA 157
Query: 666 YHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QV 836
HSQ A++ HCPG+KVV P S AKGL+ S I D NP + E +++Y E +
Sbjct: 158 QHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPAEA 217
Query: 837 PIEPYTIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
+ + IP+ +A++ ++G+ +T+V+ V E A++ K G+ CEVI++RTI P
Sbjct: 218 QSKDFLIPIGKAKIERQGTHITIVSHSRPVGHCLEAATVL-SKEGIECEVINMRTIRP 274
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,749,317
Number of extensions: 774387
Number of successful extensions: 3361
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3341
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012764
(1010 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_954665.1| 2-oxoisovalerate dehydrogenase subunit beta, mi... 438 e-123
Alignment gi|NP_077183.1| pyruvate dehydrogenase E1 component subunit bet... 133 2e-31
>ref|NP_954665.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Mus
musculus].
Length = 322
Score = 438 bits (1126), Expect = e-123
Identities = 213/239 (89%), Positives = 220/239 (92%)
Frame = +3
Query: 294 MNLFQAVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQXXX 473
MNLFQ++TSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQ
Sbjct: 1 MNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIV 60
Query: 474 XXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVG 653
EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR+PWGCVG
Sbjct: 61 GFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVG 120
Query: 654 HGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQ 833
HGALYHSQSPEAFFAHCPGIKVV+PRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQ
Sbjct: 121 HGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQ 180
Query: 834 VPIEPYTIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
VP+EPY IPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMA+EKLGVSCEVIDLRTI+P
Sbjct: 181 VPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVP 239
>ref|NP_077183.1| pyruvate dehydrogenase E1 component subunit beta, mitochondrial
precursor [Mus musculus].
Length = 359
Score = 133 bits (334), Expect = 2e-31
Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 5/245 (2%)
Frame = +3
Query: 291 KMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQX 467
++ + +A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 91
Query: 468 XXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC 647
E ++ A DQ++N AAK Y S L + R P G
Sbjct: 92 FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPV-PIVFRGPNGA 150
Query: 648 VGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAV 827
A HSQ A++ HCPG+KVV P + AKGL+ S I D NP + E +++Y A
Sbjct: 151 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAF 210
Query: 828 E---QVPIEPYTIPLSQAEVIQEGSDVTLVAWGTQV-HVIREVASMAREKLGVSCEVIDL 995
E + + + IP+ +A++ ++G+ +T+VA V H + A +++E G+ CEVI+L
Sbjct: 211 ELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKE--GIECEVINL 268
Query: 996 RTIIP 1010
RTI P
Sbjct: 269 RTIRP 273
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,962,417
Number of extensions: 1017035
Number of successful extensions: 4114
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4091
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012764
(1010 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000047.1| 2-oxoisovalerate dehydrogenase subunit beta, mi... 516 e-146
Alignment gi|NP_898871.1| 2-oxoisovalerate dehydrogenase subunit beta, mi... 516 e-146
Alignment gi|NP_000916.2| pyruvate dehydrogenase E1 component subunit bet... 130 1e-30
Alignment gi|NP_001166939.1| pyruvate dehydrogenase E1 component subunit ... 120 2e-27
>ref|NP_000047.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor
[Homo sapiens].
Length = 392
Score = 516 bits (1329), Expect = e-146
Identities = 253/290 (87%), Positives = 259/290 (89%)
Frame = +3
Query: 141 EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS 320
EGHW L G GL RGFL PA+ DAAQ+RQVAHFTFQPDPE EYGQTQKMNLFQ+VTS
Sbjct: 20 EGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDPEPREYGQTQKMNLFQSVTS 79
Query: 321 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXXXXXXX 500
ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQ
Sbjct: 80 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT 139
Query: 501 XXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 680
EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS
Sbjct: 140 GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 199
Query: 681 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP 860
PEAFFAHCPGIKVV+PRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAA E+VPIEPY IP
Sbjct: 200 PEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIP 259
Query: 861 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
LSQAEVIQEGSDVTLVAWGTQVHVIREVASMA+EKLGVSCEVIDLRTIIP
Sbjct: 260 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIP 309
>ref|NP_898871.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor
[Homo sapiens].
Length = 392
Score = 516 bits (1329), Expect = e-146
Identities = 253/290 (87%), Positives = 259/290 (89%)
Frame = +3
Query: 141 EGHWHPLSGGGLLRGFLQPASADGDAAQKRQVAHFTFQPDPETVEYGQTQKMNLFQAVTS 320
EGHW L G GL RGFL PA+ DAAQ+RQVAHFTFQPDPE EYGQTQKMNLFQ+VTS
Sbjct: 20 EGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDPEPREYGQTQKMNLFQSVTS 79
Query: 321 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXXXXXXX 500
ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQ
Sbjct: 80 ALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVT 139
Query: 501 XXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 680
EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS
Sbjct: 140 GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQS 199
Query: 681 PEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPIEPYTIP 860
PEAFFAHCPGIKVV+PRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAA E+VPIEPY IP
Sbjct: 200 PEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIP 259
Query: 861 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAREKLGVSCEVIDLRTIIP 1010
LSQAEVIQEGSDVTLVAWGTQVHVIREVASMA+EKLGVSCEVIDLRTIIP
Sbjct: 260 LSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIP 309
>ref|NP_000916.2| pyruvate dehydrogenase E1 component subunit beta, mitochondrial
isoform 1 precursor [Homo sapiens].
Length = 359
Score = 130 bits (328), Expect = 1e-30
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 5/239 (2%)
Frame = +3
Query: 309 AVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXX 485
A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAV 97
Query: 486 XXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGAL 665
E ++ A DQ++N AAK Y SG L + R P G A
Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVAA 156
Query: 666 YHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVP-- 839
HSQ A++ HCPG+KVV P + AKGL+ S I D NP + E +++Y E P
Sbjct: 157 QHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEA 216
Query: 840 -IEPYTIPLSQAEVIQEGSDVTLVAWGTQV-HVIREVASMAREKLGVSCEVIDLRTIIP 1010
+ + IP+ +A++ ++G+ +T+V+ V H + A +++E GV CEVI++RTI P
Sbjct: 217 QSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKE--GVECEVINMRTIRP 273
>ref|NP_001166939.1| pyruvate dehydrogenase E1 component subunit beta, mitochondrial
isoform 2 precursor [Homo sapiens].
Length = 341
Score = 120 bits (302), Expect = 2e-27
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 5/239 (2%)
Frame = +3
Query: 309 AVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQXXXXXXX 485
A+ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E
Sbjct: 38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAV 97
Query: 486 XXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGAL 665
E ++ A DQ++N AAK Y SG A
Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGV-------------------AA 138
Query: 666 YHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVP-- 839
HSQ A++ HCPG+KVV P + AKGL+ S I D NP + E +++Y E P
Sbjct: 139 QHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEA 198
Query: 840 -IEPYTIPLSQAEVIQEGSDVTLVAWGTQV-HVIREVASMAREKLGVSCEVIDLRTIIP 1010
+ + IP+ +A++ ++G+ +T+V+ V H + A +++E GV CEVI++RTI P
Sbjct: 199 QSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKE--GVECEVINMRTIRP 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,441,660
Number of extensions: 1214374
Number of successful extensions: 5015
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4988
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012764
(1010 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 555 e-155
Sscrofa_Chr02 373 e-100
>Sscrofa_Chr01
|| Length = 315321322
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Minus
Query: 1 gtcttggtgttccgccctccctgccggcaaagggtggcagagtagcctgcaaacatcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96716610 gtcttggtgttccgccctccctgccggcaaagggtggcagagtagcctgcaaacatcggc 96716551
Query: 61 ggcgagtggggatggcggcagtggcagcggcagcggcggttgctgtgggacggctactgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96716550 ggcgagtggggatggcggcagtggcagcggcagcggcggttgctgtgggacggctactgc 96716491
Query: 121 ggctccgggtggcccgggtggagggacactggcatcccctgagtggcggggggctgctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96716490 ggctccgggtggcccgggtggagggacactggcatcccctgagtggcggggggctgctgc 96716431
Query: 181 ggggcttcctgcaacctgcctcagccgacggggatgcggcccagaagcggcaggtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96716430 ggggcttcctgcaacctgcctcagccgacggggatgcggcccagaagcggcaggtggctc 96716371
Query: 241 acttcactttccagcccgacccggagaccgtggagtacgg 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 96716370 acttcactttccagcccgacccggagaccgtggagtacgg 96716331
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 558 cagatagttaatgaagctgccaagtatcgttatcgctctggggatctctttaattgtggc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96621089 cagatagttaatgaagctgccaagtatcgttatcgctctggggatctctttaattgtggc 96621030
Query: 618 agcctcacgatccggtccccttggggctgtgtcggccatggggctctctatcattcccag 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96621029 agcctcacgatccggtccccttggggctgtgtcggccatggggctctctatcattcccag 96620970
Query: 678 agtcctgaagcattctttgcccactgcccaggaatcaaggt 718
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 96620969 agtcctgaagcattctttgcccactgcccaggaatcaaggt 96620929
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 558 cagatagttaatgaagctgccaagtatcgttatcgctctggggatctctttaattgtggc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96663631 cagatagttaatgaagctgccaagtatcgttatcgctctggggatctctttaattgtggc 96663572
Query: 618 agcctcacgatccggtccccttggggctgtgtcggccatggggctctctatcattcccag 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96663571 agcctcacgatccggtccccttggggctgtgtcggccatggggctctctatcattcccag 96663512
Query: 678 agtcctgaagcattctttgcccactgcccaggaatcaaggt 718
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 96663511 agtcctgaagcattctttgcccactgcccaggaatcaaggt 96663471
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 426 ggtaaagatagagtttttaataccccactgtgtgaacagggaattgttggatttggaatc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96621435 ggtaaagatagagtttttaataccccactgtgtgaacagggaattgttggatttggaatc 96621376
Query: 486 gggattgcagtcactggtgctactgccattgcggaaattcagtttgcagattatattttc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96621375 gggattgcagtcactggtgctactgccattgcggaaattcagtttgcagattatattttc 96621316
Query: 546 cctgcttttgatcag 560
|||||||||||||||
Sbjct: 96621315 cctgcttttgatcag 96621301
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 426 ggtaaagatagagtttttaataccccactgtgtgaacagggaattgttggatttggaatc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96663977 ggtaaagatagagtttttaataccccactgtgtgaacagggaattgttggatttggaatc 96663918
Query: 486 gggattgcagtcactggtgctactgccattgcggaaattcagtttgcagattatattttc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96663917 gggattgcagtcactggtgctactgccattgcggaaattcagtttgcagattatattttc 96663858
Query: 546 cctgcttttgatcag 560
|||||||||||||||
Sbjct: 96663857 cctgcttttgatcag 96663843
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 715 aggtggttgtacccagaagccctttccaagctaagggacttctcttgtcatgcatagagg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96628126 aggtggttgtacccagaagccctttccaagctaagggacttctcttgtcatgcatagagg 96628067
Query: 775 ataaaaatccttgtatattttttgaacctaaaatactttacagagcagcag 825
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96628066 ataaaaatccttgtatattttttgaacctaaaatactttacagagcagcag 96628016
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 715 aggtggttgtacccagaagccctttccaagctaagggacttctcttgtcatgcatagagg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96661649 aggtggttgtacccagaagccctttccaagctaagggacttctcttgtcatgcatagagg 96661590
Query: 775 ataaaaatccttgtatattttttgaacctaaaatactttacagagcagcag 825
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96661589 ataaaaatccttgtatattttttgaacctaaaatactttacagagcagcag 96661539
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 823 cagtggaacaggttcccatagaaccatacactatccctctgtcccaggccgaagtcatcc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96425089 cagtggaacaggttcccatagaaccatacactatccctctgtcccaggccgaagtcatcc 96425148
Query: 883 aagaagggagtgatgtgactcttgttgcctggggcactcaggt 925
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96425149 aagaagggagtgatgtgactcttgttgcctggggcactcaggt 96425191
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 823 cagtggaacaggttcccatagaaccatacactatccctctgtcccaggccgaagtcatcc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96635744 cagtggaacaggttcccatagaaccatacactatccctctgtcccaggccgaagtcatcc 96635685
Query: 883 aagaagggagtgatgtgactcttgttgcctggggcactcaggt 925
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96635684 aagaagggagtgatgtgactcttgttgcctggggcactcaggt 96635642
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 920 tcaggttcatgtgatccgagaggttgcttccatggctcgggagaagcttggagtgtcctg 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96526854 tcaggttcatgtgatccgagaggttgcttccatggctcgggagaagcttggagtgtcctg 96526913
Query: 980 tgaggtcattgatctgaggactataattcct 1010
|||||||||||||||||||||||||||||||
Sbjct: 96526914 tgaggtcattgatctgaggactataattcct 96526944
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 920 tcaggttcatgtgatccgagaggttgcttccatggctcgggagaagcttggagtgtcctg 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96603144 tcaggttcatgtgatccgagaggttgcttccatggctcgggagaagcttggagtgtcctg 96603085
Query: 980 tgaggtcattgatctgaggactataattcct 1010
|||||||||||||||||||||||||||||||
Sbjct: 96603084 tgaggtcattgatctgaggactataattcct 96603054
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 279 gggcaaactcagaaaatgaatctcttccaggcagtaacaagtgccttggataactcattg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96704877 gggcaaactcagaaaatgaatctcttccaggcagtaacaagtgccttggataactcattg 96704818
Query: 339 gccaaagatcctactgcag 357
|||||||||||||||||||
Sbjct: 96704817 gccaaagatcctactgcag 96704799
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 355 cagtaatatttggtgaagatgtggcctttggtggagtctttagatgtactgttggcttgc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96702197 cagtaatatttggtgaagatgtggcctttggtggagtctttagatgtactgttggcttgc 96702138
Query: 415 gagacaagtatggtaa 430
||||||||||||||||
Sbjct: 96702137 gagacaagtatggtaa 96702122
>Sscrofa_Chr02
|| Length = 162569375
Score = 373 bits (188), Expect = e-100
Identities = 508/610 (83%), Gaps = 16/610 (2%)
Strand = Plus / Plus
Query: 314 aacaagtgccttggataactcattggccaaagatcctactgcagtaatatttggtgaaga 373
|||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| ||
Sbjct: 155422147 aacaagggccttggataactcagtggccaaagatcctactgcagtcacgtttggtgagga 155422206
Query: 374 tgtggcctttggtggagtctttagatgtactgttggcttgcgagacaagtatggtaaaga 433
|||||||||||||||||||| ||||||| |||||||||||| || |||||||||||
Sbjct: 155422207 tgtggcctttggtggagtct---gatgtaccattggcttgcgagccacatatggtaaaga 155422263
Query: 434 tagagtttttaataccccactgtgtgaacagggaattgttggatttggaatcgggattgc 493
| |||||| | || |||| ||||||||| ||| ||| |||||| || || |
Sbjct: 155422264 tggagtttctgatgccccctcgtgtgaacaaggagttgctggatt-------ggagtttc 155422316
Query: 494 agtcactggtgctactgccattgcggaaattcagtttgcagattatattttccctgcttt 553
||||| || ||||| |||| |||||||| || | |||||||||||||||||| |||| |
Sbjct: 155422317 ggtcaccggggctacggccactgcggaaactcggcttgcagattatattttcc-tgctct 155422375
Query: 554 tgatcagatagttaatgaagctgccaagtatcgttatcgctctggggatctctttaattg 613
||||||||| |||||||||||||| ||| || | ||||||||||||||||| |||||
Sbjct: 155422376 tgatcagattgttaatgaagctgcaaagcgtcctggccgctctggggatctcttcaattg 155422435
Query: 614 tggcagcctcacgatccggtccccttggggctgtgtcggccatggggctctctatcattc 673
||| |||||||| ||| ||||||| | |||| ||| |||||||||||||| |||| |
Sbjct: 155422436 tggaagcctcaccgtccagtcccctcagagctgagtccaccatggggctctctgtcatcc 155422495
Query: 674 ccagagtcctgaagcattctttgcccactgcccaggaatcaaggtggttgtacccagaag 733
||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 155422496 ccagagtcctgaaatttt-tttgcctactgcccaggagtcaaggtggttgtacccagaag 155422554
Query: 734 ccctttccaagctaagggacttctcttgtcatgcatagaggataaaaatccttgtatatt 793
||||||||| | | |||||||||| |||||||||| || |||||||||||||| |||||
Sbjct: 155422555 ccctttccaggttgagggacttcttttgtcatgcactgaagataaaaatccttggatatt 155422614
Query: 794 ttttgaacctaaaatactttacagagcagcagtggaaca-ggttcccataga---accat 849
|||||||||||| |||||| |||||||||||||| |||| |||||||| | |||||
Sbjct: 155422615 ttttgaacctaagatacttgacagagcagcagtgaaacagggttcccaccaagccaccat 155422674
Query: 850 acactatccctctgtcccaggccgaagtcatccaagaagggagtgatgtgactcttgttg 909
||| || | |||| ||||||| ||||||| ||||||||| ||||| | |||| || ||
Sbjct: 155422675 acagcattcttctgccccaggctgaagtcacccaagaaggaggtgatatcactcctgctg 155422734
Query: 910 cctggggcac 919
||||||||||
Sbjct: 155422735 cctggggcac 155422744
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 208 acggggatgcggcccagaagcggcaggtggctcacttcactttccagcccgacccggag 266
|||| ||||| |||||||||| |||||||||||||||||| |||||||| |||||||||
Sbjct: 155422006 acggcgatgcagcccagaagcagcaggtggctcacttcaccttccagcctgacccggag 155422064
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,082,932
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 17
Length of query: 1010
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 989
Effective length of database: 2,808,413,156
Effective search space: 2777520611284
Effective search space used: 2777520611284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)