Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012771
(1456 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coen... 460 e-129
Alignment gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei... 275 1e-73
Alignment gi|NP_001098906.1| methylglutaconyl-CoA hydratase, mitochondria... 237 2e-62
Alignment gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor... 120 3e-27
Alignment gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus]. 83 5e-16
Alignment gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri... 74 4e-13
Alignment gi|NP_001030492.1| enoyl-CoA hydratase domain-containing protei... 72 1e-12
Alignment gi|NP_001180085.1| enoyl-CoA hydratase domain-containing protei... 70 5e-12
Alignment gi|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain... 70 5e-12
Alignment gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 63 8e-10
>ref|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coenzyme A hydratase-like
[Bos taurus].
Length = 288
Score = 460 bits (1184), Expect = e-129
Identities = 249/336 (74%), Positives = 263/336 (78%)
Frame = +3
Query: 39 AAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAW 218
AA+ PGALGTL+A RARLVAA C +G RLPGSWT P + WARGWTPAAG AAW
Sbjct: 4 AASAAPGALGTLQASRARLVAACCTRLGARCRLPGSWT-CPRVDSTWARGWTPAAGKAAW 62
Query: 219 RRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKK 398
+RGYS+E KTEDELRV YLEEENRGIVVLGINRAYAKNSLSKNL+KMLS+AVDALKSDKK
Sbjct: 63 QRGYSAEVKTEDELRVWYLEEENRGIVVLGINRAYAKNSLSKNLIKMLSRAVDALKSDKK 122
Query: 399 VRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXX 578
VRTIIVR+EVPGIFCAGADLKER KM SSEVGPFVSK+RA+INEI
Sbjct: 123 VRTIIVRNEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAMINEI--------------- 167
Query: 579 XXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVL 758
GGTQRLPRAIGMSL KELIFSARVL
Sbjct: 168 -----------------------------------GGTQRLPRAIGMSLGKELIFSARVL 192
Query: 759 DGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVT 938
DGQEAK+VGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA+ VAKLAINQGMEVDLVT
Sbjct: 193 DGQEAKSVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMTVAKLAINQGMEVDLVT 252
Query: 939 GLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
GLAIEEACYAQT+PTKDRLEGLLAFKEKRTP YKGE
Sbjct: 253 GLAIEEACYAQTIPTKDRLEGLLAFKEKRTPHYKGE 288
>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Bos taurus].
Length = 296
Score = 275 bits (702), Expect = 1e-73
Identities = 143/289 (49%), Positives = 196/289 (67%), Gaps = 1/289 (0%)
Frame = +3
Query: 183 RGWTPAAGGAAWRRGYSSEAKTED-ELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKM 359
R W P RG SS E++V L N+GI + +NR A+N+L V
Sbjct: 13 RPWKPLE-----TRGCSSNPGAAGREIQVCALAGPNQGIAEILMNRPSARNALGNVFVSQ 67
Query: 360 LSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIAN 539
L +A+ L+ D++VR +I RS V G+FCAGADLKER +M +EVG FV +LR ++ EIA
Sbjct: 68 LLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAA 127
Query: 540 LPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM 719
P PTI CD+RVAASSA MGL+ET ++PG GGTQRLPR +G+
Sbjct: 128 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 720 SLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAK 899
+LAKELIF+ R L G +A+A+GL++H + QN+EG+AAY +A LA+E LPQ P+A+R++K
Sbjct: 188 ALAKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEILPQAPIAVRLSK 247
Query: 900 LAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
+AI++G+EVD+ +G+AIE CYAQ +PT+DRLEG+ AF+EKR PR+ GE
Sbjct: 248 VAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFREKRLPRFVGE 296
>ref|NP_001098906.1| methylglutaconyl-CoA hydratase, mitochondrial [Bos taurus].
Length = 161
Score = 237 bits (604), Expect = 2e-62
Identities = 119/143 (83%), Positives = 125/143 (87%)
Frame = +3
Query: 39 AAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAW 218
AA+ PGALGTL+A RARLVAA CA +GP WRLPGSWT V IWARGWTPAAGGAAW
Sbjct: 4 AASAAPGALGTLQASRARLVAACCARLGPRWRLPGSWTCPRVDSTIWARGWTPAAGGAAW 63
Query: 219 RRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKK 398
+RGYS+E KTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNL+KMLSKAVDALKSDKK
Sbjct: 64 QRGYSAEVKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLIKMLSKAVDALKSDKK 123
Query: 399 VRTIIVRSEVPGIFCAGADLKER 467
VRTIIVRSEVPGIFCA K R
Sbjct: 124 VRTIIVRSEVPGIFCAETYCKRR 146
>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
Length = 290
Score = 120 bits (301), Expect = 3e-27
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 2/278 (0%)
Frame = +3
Query: 219 RRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKK 398
+R ++S A E + + N G++ L NR A N+L L+ L++A+ A + D
Sbjct: 24 QRSFASSAAFEYIITAKKGRNSNVGLIQL--NRPKALNALCNGLIVELNQALQAFEEDPA 81
Query: 399 VRTIIVRSEVPGIFCAGADLKERVKM--HSSEVGPFVSKLRAVINEIANLPVPTIXXXXX 572
V I++ +F AGAD+KE + + G F+S +++ + P I
Sbjct: 82 VGAIVLTGGEK-VFAAGADIKEMQSLTFQNCYSGGFLSHW----DQLTRVKKPVIAAVNG 136
Query: 573 XXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 752
CDI A A+ G E + IPG GGTQRL RA+G SLA E++ +
Sbjct: 137 YALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGD 196
Query: 753 VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDL 932
+ Q+AK GL+S + + +A+ A + + +AK ++N E+ L
Sbjct: 197 RISAQDAKQAGLVSKIFPV----ETVVEEAIQCAEKIASNSKIVTAMAKESVNAAFEMTL 252
Query: 933 VTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
G+ +E+ + T T+DR EG+ AF EKR +K +
Sbjct: 253 AEGVKLEKKLFYSTFATEDRKEGMAAFVEKRKANFKDQ 290
>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
Length = 723
Score = 83.2 bits (204), Expect = 5e-16
Identities = 53/207 (25%), Positives = 99/207 (47%)
Frame = +3
Query: 330 NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSK 509
N++S + + + +++ +D V+ I++ GIFCAGAD++E K+H + F +
Sbjct: 22 NAISTTVARGIKESLQKAITDDTVKAIVICG-ADGIFCAGADIRE-FKVHKT----FDIQ 75
Query: 510 LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGG 689
L +++EI P + C R+A + A++G E L I+PG G
Sbjct: 76 LGDIVDEIQRNKKPVVAAIQKLALGGGLELALGCHYRIAHAEAQVGFPEVTLGILPGARG 135
Query: 690 TQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLP 869
TQ LPR +G+ A +LI S R + EA +G+I ++ + +++ A+
Sbjct: 136 TQLLPRLVGVPAALDLIISGRHISANEALKLGIIDKIVNSD-----PIEESIKFAQRISD 190
Query: 870 QGPVAIRVAKLAINQGMEVDLVTGLAI 950
Q P + R+ + + +D + A+
Sbjct: 191 QSPESRRICNMPVPSLPNMDAIFSEAL 217
>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
Length = 773
Score = 73.6 bits (179), Expect = 4e-13
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 4/233 (1%)
Frame = +3
Query: 294 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 470
+ V+ IN +K N+LS+ L + ++ + S ++R+ ++ S PG F AGADL
Sbjct: 59 VAVIRINSPNSKVNTLSQELHSEFMEVMNEVWSSSQIRSAVLISTKPGCFIAGADLNMLN 118
Query: 471 KMHSS-EVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK-- 641
+S EV + + + ++ P + C R+A K
Sbjct: 119 SCTTSQEVTQISQEAQKMFEKLEKSTKPVVAAINGSCLGGGLELAISCQYRIATKDKKTV 178
Query: 642 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG 821
+G E L I+PG G TQRLP+ +G A +++ + R + AK +GL+ ++E G
Sbjct: 179 LGSPEVLLGILPGAGATQRLPKMVGRPAAFDMMLTGRGIRADRAKKMGLVDQLVEPLGPG 238
Query: 822 DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
+ + E+L + VAI AK ++ + GL + YA ++P
Sbjct: 239 ---VKPPEERTIEYLEE--VAITFAKGLADKKITPKRDKGLVEKLTSYALSIP 286
>ref|NP_001030492.1| enoyl-CoA hydratase domain-containing protein 1 [Bos taurus].
Length = 306
Score = 72.0 bits (175), Expect = 1e-12
Identities = 54/228 (23%), Positives = 106/228 (46%), Gaps = 1/228 (0%)
Frame = +3
Query: 273 LEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGA 452
L++EN GI +L +N N+ S ++ L + V L++ + + +I+R F +G+
Sbjct: 56 LQKENSGIGILTLNNPSKMNAFSGVMMLQLLEKVIELENWTEGKGLIIRG-AKNTFSSGS 114
Query: 453 DLKERVKMHSSEVGPFVSK-LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA 629
DL + + E G V ++ + LP+ ++ CD R+
Sbjct: 115 DLNAVKALGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGRALGGGAEVTTACDFRLMT 174
Query: 630 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQ 809
+ +++ V ++ IIP GG RL IG A +++ A LD ++A +G++ +L
Sbjct: 175 TQSEIRFVHKEMGIIPSWGGATRLVEIIGGRQALKVLSGALKLDSEKALNIGMVDDILPS 234
Query: 810 NQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIE 953
+ E + ++A + ++F+ P IR K +++ E+ L L E
Sbjct: 235 SDETE-CLKEAQEWLQQFIKGPPEVIRALKKSVSSCKELCLEEALQRE 281
>ref|NP_001180085.1| enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Bos
taurus].
Length = 300
Score = 70.1 bits (170), Expect = 5e-12
Identities = 85/338 (25%), Positives = 132/338 (39%), Gaps = 5/338 (1%)
Frame = +3
Query: 33 MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGA 212
MAAAAG LRA A+ G GW G W L G + G PA G
Sbjct: 1 MAAAAG-------LRALGAK---------GSGWLRRGPWAPLTTG---FCSGG-PAGIGR 40
Query: 213 AWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSD 392
+ A+ +D +R L + R +N+LS ++K L +
Sbjct: 41 PEPGPRPTIARQQDGIRSIVLSDPKR------------RNALSLAMLKSLQSDILHEAES 88
Query: 393 KKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGP-----FVSKLRAVINEIANLPVPTI 557
+ ++ II+ +E P +F +G DLKE + E GP V+ I N PVP I
Sbjct: 89 QDLKVIIISAEGP-VFSSGHDLKEL----TDEQGPDYHAEVFQTCSEVMMLIQNHPVPII 143
Query: 558 XXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKEL 737
CDI VA+ + + + + L RA+ +A E+
Sbjct: 144 AMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVNIGVFCSTPAVA-LGRAVPRKVALEM 202
Query: 738 IFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQG 917
+F+ + QEA GL+S V+ + + + R +AR+ + + K A +
Sbjct: 203 LFTGEPISAQEALLHGLLSRVVPEERLEEETMR----IARKVASLSRSVLSLGKAAFYRQ 258
Query: 918 MEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTP 1031
+ DL T + + D EG+ AF +KR P
Sbjct: 259 LAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQKRKP 296
>ref|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain containing 3-like [Bos
taurus].
Length = 300
Score = 70.1 bits (170), Expect = 5e-12
Identities = 85/338 (25%), Positives = 132/338 (39%), Gaps = 5/338 (1%)
Frame = +3
Query: 33 MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGA 212
MAAAAG LRA A+ G GW G W L G + G PA G
Sbjct: 1 MAAAAG-------LRALGAK---------GSGWLRRGPWAPLTTG---FCSGG-PAGIGR 40
Query: 213 AWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSD 392
+ A+ +D +R L + R +N+LS ++K L +
Sbjct: 41 PEPGPRPTIARQQDGIRSIVLSDPKR------------RNALSLAMLKSLQSDILHEAES 88
Query: 393 KKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGP-----FVSKLRAVINEIANLPVPTI 557
+ ++ II+ +E P +F +G DLKE + E GP V+ I N PVP I
Sbjct: 89 QDLKVIIISAEGP-VFSSGHDLKEL----TDEQGPDYHAEVFQTCSEVMMLIQNHPVPII 143
Query: 558 XXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKEL 737
CDI VA+ + + + + L RA+ +A E+
Sbjct: 144 AMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVNIGVFCSTPAVA-LGRAVPRKVALEM 202
Query: 738 IFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQG 917
+F+ + QEA GL+S V+ + + + R +AR+ + + K A +
Sbjct: 203 LFTGEPISAQEALLHGLLSRVVPEERLEEETMR----IARKVASLSRSVLSLGKAAFYRQ 258
Query: 918 MEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTP 1031
+ DL T + + D EG+ AF +KR P
Sbjct: 259 LAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQKRKP 296
>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 62.8 bits (151), Expect = 8e-10
Identities = 57/255 (22%), Positives = 107/255 (41%), Gaps = 16/255 (6%)
Frame = +3
Query: 309 INRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKE-------- 464
+NR +N+++K + + + + D R +++ S +F +G DL +
Sbjct: 70 LNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVI-SGAGKMFSSGIDLMDMASDLLQP 128
Query: 465 ------RVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVA 626
R+ H + +++ + + I P P I CDIR +
Sbjct: 129 AGDDSARISWHLHSL---LTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYS 185
Query: 627 ASSAKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVL 803
+ + E + + G QRLP+ IG SL EL ++AR + EA GL+S +
Sbjct: 186 TRDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLF 245
Query: 804 EQNQEG-DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
+ DAA+ LA E + PVA++ K+ + + ++ L ++ +
Sbjct: 246 PDKESMLDAAF----TLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQ 301
Query: 981 TKDRLEGLLAFKEKR 1025
TKD ++ + A EK+
Sbjct: 302 TKDIMKSVQAAIEKK 316
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,916,502
Number of extensions: 1348743
Number of successful extensions: 4526
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4504
Number of HSP's successfully gapped: 18
Length of query: 485
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 379
Effective length of database: 14,174,046
Effective search space: 5371963434
Effective search space used: 5371963434
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012771
(1456 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr... 565 e-161
Alignment gi|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 145 1e-34
Alignment gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito... 116 6e-26
Alignment gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 75 1e-13
Alignment gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 75 1e-13
Alignment gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 72 1e-12
Alignment gi|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratas... 71 3e-12
Alignment gi|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 67 3e-11
Alignment gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata... 65 1e-10
Alignment gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 65 2e-10
>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
precursor (AU-specific RNA-binding enoyl-CoA hydratase)
(AU-binding protein/enoyl-CoA hydratase) [Canis
familiaris].
Length = 340
Score = 565 bits (1456), Expect = e-161
Identities = 296/338 (87%), Positives = 307/338 (90%), Gaps = 1/338 (0%)
Frame = +3
Query: 36 AAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGG-A 212
AAAA PGALGTL+AGRARLVAA CA +GPGWRLPGS TG V PA+WARGWTPAAGG +
Sbjct: 3 AAAAAAPGALGTLQAGRARLVAACCARLGPGWRLPGSVTGPRVAPAVWARGWTPAAGGGS 62
Query: 213 AWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSD 392
A RRGYSSE KTEDELRVRYLEEENRGIVVLGINRAYAKN+ SK+LVKMLSKAVDALKSD
Sbjct: 63 APRRGYSSEVKTEDELRVRYLEEENRGIVVLGINRAYAKNTFSKSLVKMLSKAVDALKSD 122
Query: 393 KKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXX 572
KKVRTIIVRSEVPGIFCAGADLKERVKM+ SEVGPFVSK+RAVI+EIANLPVPTI
Sbjct: 123 KKVRTIIVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVIDEIANLPVPTIAAIDG 182
Query: 573 XXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 752
CDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR
Sbjct: 183 LALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 242
Query: 753 VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDL 932
VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA+RVAKLAINQGMEVDL
Sbjct: 243 VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAVRVAKLAINQGMEVDL 302
Query: 933 VTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
VTGLAIEEACYAQT+PTKDRLEGLLAFKEKR PRYKGE
Sbjct: 303 VTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 340
>ref|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
2 [Canis familiaris].
Length = 147
Score = 145 bits (366), Expect = 1e-34
Identities = 76/146 (52%), Positives = 98/146 (67%)
Frame = +3
Query: 309 INRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSE 488
+NR A N+L LV L +A+ L+ D++VR ++ RS V G+FCAGADLKER +M +E
Sbjct: 1 MNRPSACNALGNVLVNQLLEALAQLREDQQVRVLLFRSGVKGVFCAGADLKEREQMSEAE 60
Query: 489 VGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLA 668
VG FV +LR ++NEIA P PTI CD+RVAASSA MGL+ET
Sbjct: 61 VGIFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRG 120
Query: 669 IIPGGGGTQRLPRAIGMSLAKELIFS 746
++PG GGTQRLPR IG++LAKELIF+
Sbjct: 121 LLPGAGGTQRLPRCIGVALAKELIFT 146
>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
(Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
hydratase 1) [Canis familiaris].
Length = 575
Score = 116 bits (290), Expect = 6e-26
Identities = 75/255 (29%), Positives = 122/255 (47%)
Frame = +3
Query: 282 ENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK 461
+N + ++ +NR A N+L L+ L++A++A + D V I++ F AGAD+K
Sbjct: 328 KNSNVGLIQLNRPKALNALCNGLMMELNQALEAFEKDPAVGAIVLTGGEKA-FAAGADIK 386
Query: 462 ERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK 641
E + + SK + +++A + P I CDI A A+
Sbjct: 387 EMQNQTFQDC--YSSKFLSHWDQLAQVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 444
Query: 642 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG 821
E L IPG GGTQRL RA+G SLA E++ + + Q+AK GL+S +
Sbjct: 445 FAQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV---- 500
Query: 822 DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEG 1001
+ +A+ A + + +AK ++N E+ L G +E+ + T T+DR EG
Sbjct: 501 ETLVEEAIRCAEKIASNSKIVTAMAKESVNAAFEMTLTEGNRLEKKLFYATFATEDRKEG 560
Query: 1002 LLAFKEKRTPRYKGE 1046
+ AF EKR +K +
Sbjct: 561 MTAFVEKRKASFKDQ 575
>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
3 [Canis familiaris].
Length = 761
Score = 75.5 bits (184), Expect = 1e-13
Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 5/234 (2%)
Frame = +3
Query: 294 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK--E 464
+ V+ +N +K N+L+K L + ++ + + ++R+ ++ S PG F AGAD+
Sbjct: 49 VAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADINMLA 108
Query: 465 RVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK- 641
K H EV + + + ++ P + C R+A K
Sbjct: 109 SCKTHE-EVTRISQEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATKDRKT 167
Query: 642 -MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQE 818
+G E L I+PG GGTQRLP+ +G+ A +++ + R + AK +GL+ ++E
Sbjct: 168 VLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPLGP 227
Query: 819 GDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
G + + E+L + VA+ AK ++ + + GL + YA ++P
Sbjct: 228 G---LKPPEERTIEYLEE--VAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIP 276
>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform
2 [Canis familiaris].
Length = 762
Score = 75.5 bits (184), Expect = 1e-13
Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 5/234 (2%)
Frame = +3
Query: 294 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK--E 464
+ V+ +N +K N+L+K L + ++ + + ++R+ ++ S PG F AGAD+
Sbjct: 49 VAVVRLNSPNSKVNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADINMLA 108
Query: 465 RVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK- 641
K H EV + + + ++ P + C R+A K
Sbjct: 109 SCKTHE-EVTRISQEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATKDRKT 167
Query: 642 -MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQE 818
+G E L I+PG GGTQRLP+ +G+ A +++ + R + AK +GL+ ++E
Sbjct: 168 VLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPLGP 227
Query: 819 GDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
G + + E+L + VA+ AK ++ + + GL + YA ++P
Sbjct: 228 G---LKPPEERTIEYLEE--VAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIP 276
>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 1 [Canis familiaris].
Length = 328
Score = 72.4 bits (176), Expect = 1e-12
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 14/258 (5%)
Frame = +3
Query: 294 IVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADL----K 461
I+ + +NR +N+++K + + + + + D R +++ S +F AG DL
Sbjct: 67 ILHVQLNRPEKRNAMNKAFWREMVECFNKIAQDPDCRAVVI-SGAGKVFTAGIDLMDMAS 125
Query: 462 ERVKMHSSEVGPFVSKLRAVINE-------IANLPVPTIXXXXXXXXXXXXXXXXXCDIR 620
E ++ +V LR +I I P P I CDIR
Sbjct: 126 EILQPQGDDVARISWNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIR 185
Query: 621 VAASSAKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISH 797
A A + E + + G QRLP+ IG SL EL F+ R + EA A GL+S
Sbjct: 186 YCAQDAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSR 245
Query: 798 VLEQNQEG--DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQ 971
V ++EG DAA+ LA E + PVA++ K+ + + GL
Sbjct: 246 VF-PDKEGMLDAAF----TLAAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMS 300
Query: 972 TVPTKDRLEGLLAFKEKR 1025
+ T+D ++ + A EK+
Sbjct: 301 MLQTQDIIKSVQAAMEKK 318
>ref|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing 3
[Canis familiaris].
Length = 261
Score = 70.9 bits (172), Expect = 3e-12
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 1/236 (0%)
Frame = +3
Query: 327 KNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVS 506
+N+LS ++K L + K +R II+ +E P +F +G DLKE S + V
Sbjct: 28 RNALSLAMLKSLQTDLLHESESKDLRVIIISAEGP-VFSSGHDLKELTDERSPDYHAEVF 86
Query: 507 KLRA-VINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGG 683
+ + V+ I N PVP I CDI VA+ + + +
Sbjct: 87 QTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNIGLFCST 146
Query: 684 GGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREF 863
G L RA+ +A E++F+ + QEA GL+S V+ Q + R +AR+
Sbjct: 147 PGVA-LGRAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPAEQLEEETMR----IARKI 201
Query: 864 LPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTP 1031
+ + K A + + DL T + V +D EG+ AF +KR P
Sbjct: 202 ASLSRRVVSLGKAAFYRQLPQDLRTAYHLTSQTMVDNVALQDGQEGIKAFIQKRKP 257
>ref|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
1 isoform 1 [Canis familiaris].
Length = 307
Score = 67.4 bits (163), Expect = 3e-11
Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 1/229 (0%)
Frame = +3
Query: 273 LEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGA 452
L++E+ GI +L +N N+ S ++ L + V L++ + + +IVR F +G+
Sbjct: 57 LQKEDSGIGILTLNNPSKMNAFSGVMMLQLLEKVIELENWTEGKGLIVRG-AKNTFSSGS 115
Query: 453 DLKERVKMHSSEVGPFVSK-LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA 629
DL + + E G + ++ + + LP+ ++ CD R+
Sbjct: 116 DLNAVKALATPEDGMALCMFMQNTLTRLMRLPLISVALIQGRALGGGAEVTTACDFRLMT 175
Query: 630 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQ 809
+ ++ V ++ I+P GG RL +G A +++ A LD A ++G++ VL
Sbjct: 176 ADGEIRFVHREMGIVPSWGGGTRLVELLGARQALKVLSGALPLDAARALSLGMVEEVLRA 235
Query: 810 NQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEE 956
+ E + ++A +F P IR K +++ E+ L L +E+
Sbjct: 236 SDEA-SCLQEARAWLGQFTQGPPQVIRALKRSVSSSRELCLEEALQMEK 283
>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
Coenzyme A dehydrogenase [Canis familiaris].
Length = 723
Score = 65.5 bits (158), Expect = 1e-10
Identities = 45/166 (27%), Positives = 79/166 (47%)
Frame = +3
Query: 330 NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSK 509
N++S +++ + + +D+ V+ I++ G F AGAD+ + S+ FV
Sbjct: 22 NAISTAVLRGIKDGLQKATTDRTVKAIVLCG-ADGKFSAGADIHSFGEPRKSD---FV-- 75
Query: 510 LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGG 689
L +++EI P + C R+A + A++G E L I+PG G
Sbjct: 76 LGHIVDEIQRTEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQIGFPEVTLGILPGARG 135
Query: 690 TQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDA 827
TQ LPR IG+ A +LI S R + EA +G++ ++ + +A
Sbjct: 136 TQLLPRLIGVPAALDLITSGRHVLADEALKLGILDEIVNSDPVEEA 181
>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 2 [Canis familiaris].
Length = 248
Score = 65.1 bits (157), Expect = 2e-10
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 14/244 (5%)
Frame = +3
Query: 336 LSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADL----KERVKMHSSEVGPFV 503
++K + + + + + D R +++ S +F AG DL E ++ +V
Sbjct: 1 MNKAFWREMVECFNKIAQDPDCRAVVI-SGAGKVFTAGIDLMDMASEILQPQGDDVARIS 59
Query: 504 SKLRAVINE-------IANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETK 662
LR +I I P P I CDIR A A + E
Sbjct: 60 WNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVD 119
Query: 663 LAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG--DAAY 833
+ + G QRLP+ IG SL EL F+ R + EA A GL+S V ++EG DAA+
Sbjct: 120 IGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVF-PDKEGMLDAAF 178
Query: 834 RKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAF 1013
LA E + PVA++ K+ + + GL + T+D ++ + A
Sbjct: 179 ----TLAAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAA 234
Query: 1014 KEKR 1025
EK+
Sbjct: 235 MEKK 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,741,496
Number of extensions: 1351356
Number of successful extensions: 4752
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4722
Number of HSP's successfully gapped: 16
Length of query: 485
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 378
Effective length of database: 15,307,552
Effective search space: 5786254656
Effective search space used: 5786254656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012771
(1456 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m... 622 e-178
Alignment gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai... 275 4e-74
Alignment gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro... 118 9e-27
Alignment gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria... 103 2e-22
Alignment gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945... 81 1e-15
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 75 9e-14
Alignment gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,... 73 5e-13
Alignment gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [... 72 1e-12
Alignment gi|XP_003353267.1| PREDICTED: enoyl-CoA hydratase domain-contai... 55 1e-07
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 54 2e-07
>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
scrofa].
Length = 338
Score = 622 bits (1604), Expect = e-178
Identities = 321/338 (94%), Positives = 321/338 (94%)
Frame = +3
Query: 33 MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGA 212
MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGA
Sbjct: 1 MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGA 60
Query: 213 AWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSD 392
AWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSD
Sbjct: 61 AWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSD 120
Query: 393 KKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXX 572
KKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTI
Sbjct: 121 KKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDG 180
Query: 573 XXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 752
CDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR
Sbjct: 181 LALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 240
Query: 753 VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDL 932
VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDL
Sbjct: 241 VLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDL 300
Query: 933 VTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
VTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE
Sbjct: 301 VTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 338
>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 275
Score = 275 bits (704), Expect = 4e-74
Identities = 135/252 (53%), Positives = 183/252 (72%)
Frame = +3
Query: 291 GIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 470
GI + +NR A+N+L V L +A+ L+ D+ VR +I RS V G+FCAGADLKER
Sbjct: 24 GITEILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 83
Query: 471 KMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGL 650
+M +EVG FV +LR ++NEIA P PTI CD+RVAASSA MGL
Sbjct: 84 QMSEAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGL 143
Query: 651 VETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAA 830
+ET ++PG GGTQRLPR +G++LAKELIF+ R L G +A+A+GL++H + QN+EG+AA
Sbjct: 144 IETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAA 203
Query: 831 YRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLA 1010
Y +AL LA+E LPQ P+A+R+ KLAI++G+EVD+ +G+AIE CYAQ +PT+DRLEG+ A
Sbjct: 204 YHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAA 263
Query: 1011 FKEKRTPRYKGE 1046
F+EKRTP++ GE
Sbjct: 264 FREKRTPKFVGE 275
>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
Length = 290
Score = 118 bits (295), Expect = 9e-27
Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 2/277 (0%)
Frame = +3
Query: 222 RGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKV 401
R +S A E + + + N G++ L NR A N+L K L+ L++A+ A + D V
Sbjct: 25 RSLASSAHFEHIVVAKKGKSSNVGLIQL--NRPKALNALCKGLILELNQALQAFEEDPAV 82
Query: 402 RTIIVRSEVPGIFCAGADLKERVKMHSSEV--GPFVSKLRAVINEIANLPVPTIXXXXXX 575
I++ F AGAD+KE + G F+S + ++ + P I
Sbjct: 83 GAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSHW----DHLSRVRKPVIAAVNGY 137
Query: 576 XXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARV 755
CDI A A+ G E L IPG GGTQRL RA+G SL E++ +
Sbjct: 138 ALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGTGGTQRLTRAVGKSLTMEMVLTGDR 197
Query: 756 LDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLV 935
+ QEAK GL+S + + +A+ A + + +AK ++N E L
Sbjct: 198 ISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLA 253
Query: 936 TGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
GL +E+ + T T+DR EG+ AF EKR +K +
Sbjct: 254 EGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 290
>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
Length = 341
Score = 103 bits (257), Expect = 2e-22
Identities = 80/286 (27%), Positives = 123/286 (43%), Gaps = 2/286 (0%)
Frame = +3
Query: 195 PAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAV 374
P +G W S A E + + + N G++ L NR K L+ L++A+
Sbjct: 69 PVSGNPLWSP--SPGAHFEHIVVAKKGKSSNVGLIQL--NRXXXXXXXCKGLILELNQAL 124
Query: 375 DALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEV--GPFVSKLRAVINEIANLPV 548
A + D V I++ F AGAD+KE + G F+S + ++ +
Sbjct: 125 QAFEEDPAVGAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSHW----DHLSRVRK 179
Query: 549 PTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 728
P I CDI A A+ G E P GGTQRL RA+G SL
Sbjct: 180 PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPELLSETCPRTGGTQRLTRAVGKSLT 239
Query: 729 KELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAI 908
E++ + + QEAK GL+S + + +A+ A + + +AK ++
Sbjct: 240 MEMVLTGDRISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESV 295
Query: 909 NQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
N E L GL +E+ + T T+DR EG+ AF EKR +K +
Sbjct: 296 NAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 341
>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
Length = 845
Score = 81.3 bits (199), Expect = 1e-15
Identities = 94/350 (26%), Positives = 145/350 (41%), Gaps = 14/350 (4%)
Frame = +3
Query: 24 TENMAAAAGVPGALGTLRAGRARLVAAYCAGI------GPGWRLPGSWTGLPVGPAIWAR 185
+E AA GV LG +R A L A +G+ GPGW L GP
Sbjct: 523 SERQTAALGVE--LGGVRPPGASLAAMAASGLRALGAKGPGW--------LRRGP----- 567
Query: 186 GWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLS 365
W P A G RG + + E R+ + + GI + +N +N+LS ++K L
Sbjct: 568 -WAPLAAGFC-SRGSAGVGRPEPGPRLTSARQRD-GIRSIVLNNPKRRNALSLAMLKSLQ 624
Query: 366 KAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGP--FVSKLRA---VINE 530
+ + ++ I++ +E P +F +G DLKE ++E GP RA V+
Sbjct: 625 SDLLHDAESRDLKVIVISAEGP-VFSSGHDLKEL----TAEQGPDYHAEVFRACSEVMML 679
Query: 531 IANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA---SSAKMGLVETKLAIIPGGGGTQRL 701
I N PVP I CDI VA+ S A G+ PG + L
Sbjct: 680 IQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVTIGLFCSTPGVAVGRAL 739
Query: 702 PRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPV 881
PR + + E++F+ + QEA GL+S V+ + + + R +AR+
Sbjct: 740 PRKVAL----EMLFTGEPMSAQEALLHGLLSRVVPEERLEEETMR----IARKVASLSRP 791
Query: 882 AIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTP 1031
+ + K A + + DL T + + D EG+ AF +KR P
Sbjct: 792 VLSLGKAAFYRQLAQDLRTAYHLASQTMVDNLGLPDAQEGIQAFLQKRDP 841
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 75.1 bits (183), Expect = 9e-14
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 4/233 (1%)
Frame = +3
Query: 294 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 470
+ V+ IN +K N+L + L + ++ + S ++R+ ++ S PG F AGAD+
Sbjct: 49 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 108
Query: 471 KMHSS-EVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK-- 641
+S EV + + ++ P + C R+A K
Sbjct: 109 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 168
Query: 642 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG 821
+G E L I+PG GGTQRLP+ +G+ A +++ + R + +AK +GL+ ++E G
Sbjct: 169 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVEPLGPG 228
Query: 822 DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
+ + E+L + VA+ AK ++ + GL + YA ++P
Sbjct: 229 ---LKPPEERTIEYLEE--VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 276
>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
scrofa].
Length = 322
Score = 72.8 bits (177), Expect = 5e-13
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 12/251 (4%)
Frame = +3
Query: 309 INRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK--------- 461
+NR +N++++ + + + + D R +++ S +F +G DL
Sbjct: 66 LNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVI-SGAGKMFTSGIDLVDMASDIFQP 124
Query: 462 --ERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASS 635
E V S + +SK + + I P P I CDIR A
Sbjct: 125 QGEDVARISWHLHNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQD 184
Query: 636 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQN 812
A + E + + G QRLP+ IG SL EL F+AR + EA GL+S +
Sbjct: 185 AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPDQ 244
Query: 813 QEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDR 992
+ AL LA E + PVA++ K+ + + + GL ++ + TKD
Sbjct: 245 E---VLLEAALALAAEIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDV 301
Query: 993 LEGLLAFKEKR 1025
++ + A EK+
Sbjct: 302 IKSVQAAMEKK 312
>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
Length = 723
Score = 71.6 bits (174), Expect = 1e-12
Identities = 51/207 (24%), Positives = 95/207 (45%)
Frame = +3
Query: 330 NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSK 509
N+LS +++ + + + +D V+ I++ GIF AGAD+ +S++
Sbjct: 22 NALSVSVLHGIKEGLQKALTDHTVKAIVICG-TDGIFSAGADIHGFSAHKTSDL-----T 75
Query: 510 LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGG 689
L ++++I P + C R+A + A++G E L I+PG G
Sbjct: 76 LGDIVDKIQRYEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQVGFPEVTLGILPGARG 135
Query: 690 TQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLP 869
TQ LPR IG+ A +LI S R + EA+ +G++ V+ + +A+ A+ L
Sbjct: 136 TQLLPRLIGVPAALDLITSGRHISANEARKLGILDEVVNSD-----PVEEAIRFAQRVLD 190
Query: 870 QGPVAIRVAKLAINQGMEVDLVTGLAI 950
Q + R+ ++ +D + A+
Sbjct: 191 QTLESRRICNKSVQSLSNMDTIFSEAL 217
>ref|XP_003353267.1| PREDICTED: enoyl-CoA hydratase domain-containing protein 1-like
[Sus scrofa].
Length = 139
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/112 (29%), Positives = 59/112 (52%)
Frame = +3
Query: 618 RVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISH 797
R+ + +++ V ++ IIP GG RL IG A +++ A LD ++A +G+
Sbjct: 4 RLMTTESEIRFVHREMGIIPSWGGAARLVEIIGSRQALKVLSGALRLDSEKALHIGIADE 63
Query: 798 VLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIE 953
VL+ + E + R+A + ++F+ P IR K +I+ G E+ L L +E
Sbjct: 64 VLQSSDETE-CLREAREWLQQFIKGPPEVIRALKKSISSGRELCLEEALQME 114
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 53.9 bits (128), Expect = 2e-07
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 9/254 (3%)
Frame = +3
Query: 291 GIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADL---- 458
GI + +NR KN+L+ + + + +A++A D T++ S +C+G DL
Sbjct: 149 GITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGS--GDYYCSGNDLTNFK 206
Query: 459 -----KERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRV 623
K + SS V LR ++ + P P I D+
Sbjct: 207 DIPPDKVEERAQSSAV-----LLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVY 261
Query: 624 AASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVL 803
A+ A + L P G + P+ +G S A E++ + L +EA A GL++ V
Sbjct: 262 ASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVF 321
Query: 804 EQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPT 983
D ++ + + P A+R+AK + + L A E A+ +
Sbjct: 322 PD----DTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVS 377
Query: 984 KDRLEGLLAFKEKR 1025
+ + ++AF K+
Sbjct: 378 DECITAIVAFLSKK 391
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,063,955
Number of extensions: 914790
Number of successful extensions: 3001
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2987
Number of HSP's successfully gapped: 10
Length of query: 485
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 382
Effective length of database: 8,779,541
Effective search space: 3353784662
Effective search space used: 3353784662
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012771
(1456 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p... 499 e-141
Alignment gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2... 278 8e-75
Alignment gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M... 117 2e-26
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 81 2e-15
Alignment gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 73 6e-13
Alignment gi|NP_001103665.1| enoyl-CoA hydratase domain-containing protei... 69 9e-12
Alignment gi|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1... 69 9e-12
Alignment gi|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3... 68 2e-11
Alignment gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus]. 68 2e-11
Alignment gi|NP_034153.2| enoyl-CoA delta isomerase 1, mitochondrial prec... 55 1e-07
>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 499 bits (1284), Expect = e-141
Identities = 269/335 (80%), Positives = 279/335 (83%)
Frame = +3
Query: 42 AAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWR 221
AA PGALG LR RLVAA CA +GP A WARG P R
Sbjct: 2 AAAAPGALGALRTVGVRLVAACCARLGP---------------AAWARGTAP-------R 39
Query: 222 RGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKV 401
RGYSSE KTEDELRVR+LEEENRGIVVLGINRAY KN+LSKNL+KMLSKAVDALKSDKKV
Sbjct: 40 RGYSSEVKTEDELRVRHLEEENRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKV 99
Query: 402 RTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXX 581
RTII+RSEVPGIFCAGADLKER KMHSSEVGPFVSK+R+VIN+IANLPVPTI
Sbjct: 100 RTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLAL 159
Query: 582 XXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD 761
CDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD
Sbjct: 160 GGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD 219
Query: 762 GQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTG 941
GQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA+RVAKLAINQGMEVDLVTG
Sbjct: 220 GQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTG 279
Query: 942 LAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
LAIEEACYAQT+ TKDRLEGLLAFKEKR PRYKGE
Sbjct: 280 LAIEEACYAQTISTKDRLEGLLAFKEKRPPRYKGE 314
>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Mus musculus].
Length = 296
Score = 278 bits (711), Expect = 8e-75
Identities = 140/283 (49%), Positives = 200/283 (70%), Gaps = 5/283 (1%)
Frame = +3
Query: 213 AWR----RGYSSEAKTED-ELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVD 377
+WR R +S A T E++V+ L N+GI + +NR A+N+L V L +A+
Sbjct: 14 SWRFSGARDCASHATTRTPEIQVQALTGPNQGITEILMNRPNARNALGNVFVSELLEALA 73
Query: 378 ALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTI 557
L+ D++VR ++ RS V G+FCAGADLKER +M EVG FV +LR +++EIA PVPTI
Sbjct: 74 QLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAAFPVPTI 133
Query: 558 XXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKEL 737
CD+R+AASSA MGL+ET ++PG GGTQRLPR +G++LAKEL
Sbjct: 134 AAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKEL 193
Query: 738 IFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQG 917
IF+ R L+G +A+ +GL++H + QN+EG+AAY +AL LA+E LPQ P+A+R+ K+AI++G
Sbjct: 194 IFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRG 253
Query: 918 MEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
MEVD+ +G+AIE+ CYAQ +PT+DRLEG+ AF+EKR P++ G+
Sbjct: 254 MEVDIASGMAIEQMCYAQNIPTQDRLEGMAAFREKRAPKFVGK 296
>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
Length = 290
Score = 117 bits (294), Expect = 2e-26
Identities = 75/253 (29%), Positives = 120/253 (47%)
Frame = +3
Query: 282 ENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLK 461
+N + ++ +NR A N+L L++ L++A++ + D V I++ F AGAD+K
Sbjct: 43 KNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKA-FAAGADIK 101
Query: 462 ERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK 641
E + + SK + + I + P I CDI A A+
Sbjct: 102 EMQNRTFQDC--YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 159
Query: 642 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG 821
G E L IPG GGTQRL RA+G SLA E++ + + Q+AK GL+S +
Sbjct: 160 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV---- 215
Query: 822 DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEG 1001
+ +A+ A + + + +AK ++N E+ L G +E+ + T T DR EG
Sbjct: 216 EKLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFATDDRREG 275
Query: 1002 LLAFKEKRTPRYK 1040
+ AF EKR +K
Sbjct: 276 MTAFVEKRKANFK 288
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 80.9 bits (198), Expect = 2e-15
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 4/233 (1%)
Frame = +3
Query: 294 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 470
+ V+ IN +K N+L+K + + ++ + ++ ++R+ ++ S PG F AGAD+
Sbjct: 49 VAVIRINSPNSKVNTLNKEVQSEFIEVMNEIWANDQIRSAVLISSKPGCFVAGADINMLS 108
Query: 471 KMHSSEVGPFVSKL-RAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK-- 641
+ + +S+ + + ++ P P + C R+A K
Sbjct: 109 SCTTPQEATRISQEGQRMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYRIATKDRKTV 168
Query: 642 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG 821
+G+ E L I+PG GGTQRLP+ +G+ A +++ + R + AK +GL+ ++E G
Sbjct: 169 LGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPLGPG 228
Query: 822 DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
+ + E+L + VA+ AK ++ + GL + YA TVP
Sbjct: 229 ---IKSPEERTIEYLEE--VAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVP 276
>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor
[Mus musculus].
Length = 327
Score = 72.8 bits (177), Expect = 6e-13
Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 12/251 (4%)
Frame = +3
Query: 309 INRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSE 488
+NR +N++++ + L + + D R ++V S +F +G DL +
Sbjct: 71 LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVV-SGAGKMFTSGIDLMDMASELMQP 129
Query: 489 VGP-----------FVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASS 635
G +SK + I P P I CDIR
Sbjct: 130 SGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYCTQD 189
Query: 636 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQN 812
A + E + + G QRLP+ IG SL EL FSAR + EA GL+S V
Sbjct: 190 AFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVF--- 246
Query: 813 QEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDR 992
Q+ DA A LA + + PVA++ +K+ + + + L + T+D
Sbjct: 247 QDKDAMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDI 306
Query: 993 LEGLLAFKEKR 1025
++ + A EKR
Sbjct: 307 IKSVQAAMEKR 317
>ref|NP_001103665.1| enoyl-CoA hydratase domain-containing protein 1 isoform b [Mus
musculus].
Length = 299
Score = 68.9 bits (167), Expect = 9e-12
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 1/230 (0%)
Frame = +3
Query: 273 LEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGA 452
L ++ GI +L +N N+ S ++ L + V L++ + + +I+ FC+G+
Sbjct: 49 LLKKQNGIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIHG-AKNTFCSGS 107
Query: 453 DLKERVKMHSSEVGPFVSK-LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA 629
DL + + E G +S ++ + LP+ ++ CD R+
Sbjct: 108 DLNAVKALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMT 167
Query: 630 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQ 809
+ + V ++ I+P GGT RL IG A +++ LD +EA +GL VL+
Sbjct: 168 EESVIRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQP 227
Query: 810 NQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEA 959
+ E A +A + +F+ P IR K ++ E L IEEA
Sbjct: 228 SDE-TTALEQAQEWLEKFVSGPPQVIRGLKKSVCSARE------LYIEEA 270
>ref|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1 isoform a [Mus
musculus].
Length = 322
Score = 68.9 bits (167), Expect = 9e-12
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 1/230 (0%)
Frame = +3
Query: 273 LEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGA 452
L ++ GI +L +N N+ S ++ L + V L++ + + +I+ FC+G+
Sbjct: 72 LLKKQNGIGILTLNNPNKMNAFSGVMMLQLLERVIELENWTEGKGLIIHG-AKNTFCSGS 130
Query: 453 DLKERVKMHSSEVGPFVSK-LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA 629
DL + + E G +S ++ + LP+ ++ CD R+
Sbjct: 131 DLNAVKALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMT 190
Query: 630 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQ 809
+ + V ++ I+P GGT RL IG A +++ LD +EA +GL VL+
Sbjct: 191 EESVIRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVLQP 250
Query: 810 NQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEA 959
+ E A +A + +F+ P IR K ++ E L IEEA
Sbjct: 251 SDE-TTALEQAQEWLEKFVSGPPQVIRGLKKSVCSARE------LYIEEA 293
>ref|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Mus musculus].
Length = 300
Score = 67.8 bits (164), Expect = 2e-11
Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 1/282 (0%)
Frame = +3
Query: 189 WTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSK 368
W P + G G + A +E E R+ +++ GI + ++ +N+LS ++K L
Sbjct: 23 WAPLSAGFC-SPGSAGPAGSESEPRLTSTRQQD-GIRNIVLSNPRRRNALSLAMLKSLRS 80
Query: 369 AVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRA-VINEIANLP 545
+ + ++ II+ +E P +F +G DLKE + V + + V+ I N P
Sbjct: 81 DILHEAESEDLKVIIISAEGP-VFSSGHDLKELTDAQGRDYHAEVFQTCSEVMMLIRNHP 139
Query: 546 VPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL 725
VP + CDI VA+ + + + L RA+ +
Sbjct: 140 VPILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPAVA-LGRAVPRKV 198
Query: 726 AKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLA 905
A E++F+ + QEA GLIS V+ + Q + + +A++ + + K
Sbjct: 199 ALEMLFTGEPISAQEALRHGLISKVVPEEQ----LEAETMRIAKKISSLSRSVVALGKAT 254
Query: 906 INQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTP 1031
+ + DL T + + +D EG+ AF +KR P
Sbjct: 255 FYKQLPQDLRTAYFLASQAMVDNLALQDGQEGIEAFIQKRKP 296
>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
Length = 718
Score = 67.8 bits (164), Expect = 2e-11
Identities = 45/166 (27%), Positives = 77/166 (46%)
Frame = +3
Query: 330 NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSK 509
N++S ++ + + D VR I++ FCAGAD+ H + P
Sbjct: 22 NAISPTVITEVRNGLQKASLDHTVRAIVICGANDN-FCAGADI------HGFK-SPTGLT 73
Query: 510 LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGG 689
L ++++EI P + C R+A + A++G E L I+PG G
Sbjct: 74 LGSLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARG 133
Query: 690 TQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDA 827
TQ LPR +G+ +A +LI S R + EA +G++ V++ + +A
Sbjct: 134 TQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVEEA 179
>ref|NP_034153.2| enoyl-CoA delta isomerase 1, mitochondrial precursor [Mus
musculus].
Length = 289
Score = 55.5 bits (132), Expect = 1e-07
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 2/207 (0%)
Frame = +3
Query: 201 AGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDA 380
AG RR A+ RV E G+ V+ + R NSLS + + +++
Sbjct: 13 AGSRLGRREAVDGARRFANKRVLVETEGPAGVAVMKL-RNPPVNSLSLECLTEFTISLEK 71
Query: 381 LKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIX 560
L++DK +R +I+ SE PGIF AG DL E + + + ++ + + + +
Sbjct: 72 LENDKSIRGVILTSECPGIFSAGLDLLEMYGRNPAHYAEYWKNVQELWLRLYTSNMILVS 131
Query: 561 XXXXXXXXXXXXXXXXCDIRVAASSAK--MGLVETKLAIIPGGGGTQRLPRAIGMSLAKE 734
CD RV A + K +GL E+ L I+ IG A+
Sbjct: 132 AINGASPAGGCLLALCCDYRVMADNPKYTIGLNESLLGIVAPFWFKDMYVNTIGHREAER 191
Query: 735 LIFSARVLDGQEAKAVGLISHVLEQNQ 815
+ + EA VG++ V+ ++Q
Sbjct: 192 ALQLGTLFSPAEALKVGVVDEVVPEDQ 218
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,073,921
Number of extensions: 1119427
Number of successful extensions: 3485
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 14
Length of query: 485
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 380
Effective length of database: 12,463,779
Effective search space: 4736236020
Effective search space used: 4736236020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012771
(1456 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p... 544 e-155
Alignment gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei... 275 6e-74
Alignment gi|NP_060751.2| enoyl-CoA hydratase domain-containing protein 2... 244 1e-64
Alignment gi|NP_001185891.1| enoyl-CoA hydratase domain-containing protei... 215 1e-55
Alignment gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H... 117 3e-26
Alignment gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri... 82 2e-15
Alignment gi|NP_001002030.1| enoyl-CoA hydratase domain-containing protei... 77 4e-14
Alignment gi|NP_001132982.1| enoyl-CoA hydratase domain-containing protei... 77 4e-14
Alignment gi|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3... 71 3e-12
Alignment gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 68 2e-11
>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
sapiens].
Length = 339
Score = 544 bits (1401), Expect = e-155
Identities = 285/337 (84%), Positives = 297/337 (88%)
Frame = +3
Query: 36 AAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAA 215
AA A PGALG+L AG ARLVAA A + PG RLPGS G GPAIWA+GW PAAGG A
Sbjct: 3 AAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPA 62
Query: 216 WRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDK 395
+RGYSSE KTEDELRVR+LEEENRGIVVLGINRAY KNSLSKNL+KMLSKAVDALKSDK
Sbjct: 63 PKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDK 122
Query: 396 KVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIXXXXXX 575
KVRTII+RSEVPGIFCAGADLKER KM SSEVGPFVSK+RAVIN+IANLPVPTI
Sbjct: 123 KVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGL 182
Query: 576 XXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARV 755
CDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARV
Sbjct: 183 ALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARV 242
Query: 756 LDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLV 935
LDG+EAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA+RVAKLAINQGMEVDLV
Sbjct: 243 LDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLV 302
Query: 936 TGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
TGLAIEEACYAQT+PTKDRLEGLLAFKEKR PRYKGE
Sbjct: 303 TGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 339
>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 1 [Homo sapiens].
Length = 292
Score = 275 bits (704), Expect = 6e-74
Identities = 141/289 (48%), Positives = 197/289 (68%), Gaps = 1/289 (0%)
Frame = +3
Query: 183 RGWTPAAGGAAWRRGYSSE-AKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKM 359
R W P RG +S+ A E++VR L ++GI + +NR A+N+L V
Sbjct: 9 RPWRPLRA-----RGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNALGNVFVSE 63
Query: 360 LSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIAN 539
L + + L+ D++VR ++ RS V G+FCAGADLKER +M +EVG FV +LR ++N+IA
Sbjct: 64 LLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAA 123
Query: 540 LPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM 719
P PTI CD+RVAASSA MGL+ET ++PG GGTQRLPR +G+
Sbjct: 124 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 183
Query: 720 SLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAK 899
+LAKELIF+ R L G EA +GL++H + QN+EGDAAY++A LA+E LPQ P+A+R+ K
Sbjct: 184 ALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQAPIAVRLGK 243
Query: 900 LAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
+AI++G EVD+ +G+AIE CYAQ +PT+DRLEG+ AF+EKRTP++ G+
Sbjct: 244 VAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVGK 292
>ref|NP_060751.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 2 [Homo sapiens].
Length = 261
Score = 244 bits (624), Expect = 1e-64
Identities = 131/289 (45%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Frame = +3
Query: 183 RGWTPAAGGAAWRRGYSSE-AKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKM 359
R W P RG +S+ A E++VR L ++GI + +NR A+N+L V
Sbjct: 9 RPWRPLRA-----RGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNALGNVFVSE 63
Query: 360 LSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIAN 539
L + + L+ D++VR ++ RS V G+FCAGADLKER +M +EVG FV +LR ++N+IA
Sbjct: 64 LLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIA- 122
Query: 540 LPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM 719
SSA MGL+ET ++PG GGTQRLPR +G+
Sbjct: 123 ------------------------------SSAVMGLIETTRGLLPGAGGTQRLPRCLGV 152
Query: 720 SLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAK 899
+LAKELIF+ R L G EA +GL++H + QN+EGDAAY++A LA+E LPQ P+A+R+ K
Sbjct: 153 ALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQAPIAVRLGK 212
Query: 900 LAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
+AI++G EVD+ +G+AIE CYAQ +PT+DRLEG+ AF+EKRTP++ G+
Sbjct: 213 VAIDRGTEVDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVGK 261
>ref|NP_001185891.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 3 [Homo sapiens].
Length = 244
Score = 215 bits (547), Expect = 1e-55
Identities = 123/289 (42%), Positives = 172/289 (59%), Gaps = 1/289 (0%)
Frame = +3
Query: 183 RGWTPAAGGAAWRRGYSSE-AKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKM 359
R W P RG +S+ A E++VR L ++GI + +NR A+N+L V
Sbjct: 9 RPWRPLRA-----RGCASDGAAGGSEIQVRALAGPDQGITEILMNRPSARNALGNVFVSE 63
Query: 360 LSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIAN 539
L + + L+ D++VR ++ RS V G+FCAGADLKER +M +EVG FV +LR ++N+IA
Sbjct: 64 LLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIA- 122
Query: 540 LPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM 719
SSA MGL+ET ++PG GGTQRLPR +G+
Sbjct: 123 ------------------------------SSAVMGLIETTRGLLPGAGGTQRLPRCLGV 152
Query: 720 SLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAK 899
+LAKELIF+ R L G EA +GL++H + QN+EGDAAY++A LA+E LPQ
Sbjct: 153 ALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEILPQ--------- 203
Query: 900 LAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
VD+ +G+AIE CYAQ +PT+DRLEG+ AF+EKRTP++ G+
Sbjct: 204 --------VDIASGMAIEGMCYAQNIPTRDRLEGMAAFREKRTPKFVGK 244
>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
Length = 290
Score = 117 bits (293), Expect = 3e-26
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 4/300 (1%)
Frame = +3
Query: 159 PVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRG----IVVLGINRAYA 326
P+ P + W P A GA + Y+ E RG + ++ +NR A
Sbjct: 14 PLRPPVRCPAWRPFASGANFE----------------YIIAEKRGKNNTVGLIQLNRPKA 57
Query: 327 KNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVS 506
N+L L+ L++A+ + D V I++ F AGAD+KE + + + S
Sbjct: 58 LNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKA-FAAGADIKEMQNLSFQDC--YSS 114
Query: 507 KLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAKMGLVETKLAIIPGGG 686
K + + + P I CDI A A+ E + IPG G
Sbjct: 115 KFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAG 174
Query: 687 GTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFL 866
GTQRL RA+G SLA E++ + + Q+AK GL+S + + +A+ A +
Sbjct: 175 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPV----ETLVEEAIQCAEKIA 230
Query: 867 PQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 1046
+ + +AK ++N E+ L G +E+ + T T DR EG+ AF EKR +K +
Sbjct: 231 SNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANFKDQ 290
>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
sapiens].
Length = 763
Score = 81.6 bits (200), Expect = 2e-15
Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 4/233 (1%)
Frame = +3
Query: 294 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 470
+ V+ IN +K N+LSK L S+ ++ + + ++R+ ++ S PG F AGAD+
Sbjct: 49 VAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLA 108
Query: 471 KMHS-SEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASSAK-- 641
+ EV + + ++ ++ P + C R+A K
Sbjct: 109 ACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTV 168
Query: 642 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEG 821
+G E L +PG GGTQRLP+ +G+ A +++ + R + AK +GL+ ++E G
Sbjct: 169 LGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLGPG 228
Query: 822 DAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVP 980
+ + E+L + VAI AK ++ + GL + YA T+P
Sbjct: 229 ---LKPPEERTIEYLEE--VAITFAKGLADKKISPKRDKGLVEKLTAYAMTIP 276
>ref|NP_001002030.1| enoyl-CoA hydratase domain-containing protein 1 isoform 1 [Homo
sapiens].
Length = 301
Score = 77.0 bits (188), Expect = 4e-14
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 1/228 (0%)
Frame = +3
Query: 273 LEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGA 452
L++E+ GI +L +N N+ S ++ L + V L++ + + +IVR F +G+
Sbjct: 51 LQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRG-AKNTFSSGS 109
Query: 453 DLKERVKMHSSEVGPFVSK-LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA 629
DL + + E G V ++ + LP+ ++ CD R+
Sbjct: 110 DLNAVKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMT 169
Query: 630 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQ 809
+K+ V ++ IIP GGT RL IG A +++ A LD + A +G++ VL+
Sbjct: 170 PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQS 229
Query: 810 NQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIE 953
+ E + +A + ++F+ P IR K ++ G E+ L L E
Sbjct: 230 SDE-TKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNE 276
>ref|NP_001132982.1| enoyl-CoA hydratase domain-containing protein 1 isoform 5 [Homo
sapiens].
Length = 307
Score = 77.0 bits (188), Expect = 4e-14
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 1/228 (0%)
Frame = +3
Query: 273 LEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGA 452
L++E+ GI +L +N N+ S ++ L + V L++ + + +IVR F +G+
Sbjct: 57 LQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRG-AKNTFSSGS 115
Query: 453 DLKERVKMHSSEVGPFVSK-LRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAA 629
DL + + E G V ++ + LP+ ++ CD R+
Sbjct: 116 DLNAVKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMT 175
Query: 630 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQ 809
+K+ V ++ IIP GGT RL IG A +++ A LD + A +G++ VL+
Sbjct: 176 PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQS 235
Query: 810 NQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIE 953
+ E + +A + ++F+ P IR K ++ G E+ L L E
Sbjct: 236 SDE-TKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNE 282
>ref|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Homo sapiens].
Length = 303
Score = 70.9 bits (172), Expect = 3e-12
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 6/258 (2%)
Frame = +3
Query: 291 GIVVLGINRAYAKNSLSKNLVKMLSKAV--DALKSDKKVRTIIVRSEVPGIFCAGADLKE 464
GI + ++ +N+LS ++K L + DA +D KV II+ +E P +F +G DLKE
Sbjct: 55 GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKV--IIISAEGP-VFSSGHDLKE 111
Query: 465 RVKM----HSSEVGPFVSKLRAVINEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAAS 632
+ + +EV SK V+ I N PVP I CDI VA+
Sbjct: 112 LTEEQGRDYHAEVFQTCSK---VMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASD 168
Query: 633 SAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQN 812
+ + + G L RA+ +A E++F+ + QEA GL+S V+ +
Sbjct: 169 KSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEA 227
Query: 813 QEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDR 992
+ + R +AR+ + + K + + DL T + + +D
Sbjct: 228 ELQEETMR----IARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDG 283
Query: 993 LEGLLAFKEKRTPRYKGE 1046
EG+ AF +KR P + E
Sbjct: 284 QEGITAFLQKRKPVWSHE 301
>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor
[Homo sapiens].
Length = 328
Score = 68.2 bits (165), Expect = 2e-11
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 12/251 (4%)
Frame = +3
Query: 309 INRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSE 488
+NR +N+++K + + + + + D R +++ S +F AG DL +
Sbjct: 72 LNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVI-SGAGKMFTAGIDLMDMASDILQP 130
Query: 489 VGPFVSK----LRAVI-------NEIANLPVPTIXXXXXXXXXXXXXXXXXCDIRVAASS 635
G V++ LR +I N I P P I CDIR A
Sbjct: 131 KGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQD 190
Query: 636 AKMGLVETKLAIIPGGGGTQRLPRAIG-MSLAKELIFSARVLDGQEAKAVGLISHVLEQN 812
A + E + + G QRLP+ IG SL EL F+AR + EA GL+S V
Sbjct: 191 AFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVF--- 247
Query: 813 QEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDR 992
+ + AL LA E + PVA++ K+ + + + L + + T+D
Sbjct: 248 PDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQDL 307
Query: 993 LEGLLAFKEKR 1025
++ + A E +
Sbjct: 308 VKSVQATTENK 318
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,804,250
Number of extensions: 1321260
Number of successful extensions: 4415
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4394
Number of HSP's successfully gapped: 20
Length of query: 485
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 379
Effective length of database: 14,802,980
Effective search space: 5610329420
Effective search space used: 5610329420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012771
(1456 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 876 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 876 bits (442), Expect = 0.0
Identities = 445/446 (99%)
Strand = Plus / Minus
Query: 970 agactgttccaacgaaagacagacttgaaggtcttcttgcttttaaagagaaaaggaccc 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075585 agactgttccaacgaaagacagacttgaaggtcttcttgcttttaaagagaaaaggaccc 3075526
Query: 1030 ctcgctataaaggagaatagaggcaacagaaatctttaaaatgccagtgtaataaatgta 1089
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3075525 ctcgctataaaggagaatagaagcaacagaaatctttaaaatgccagtgtaataaatgta 3075466
Query: 1090 cttctggaagtgtctttcagatccatgtatgcctcagcacctggaaccccagcgaccaaa 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075465 cttctggaagtgtctttcagatccatgtatgcctcagcacctggaaccccagcgaccaaa 3075406
Query: 1150 gtaaagagcaagttatctgtataccgaataaagtacctgcagtggacctatatgtgtact 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075405 gtaaagagcaagttatctgtataccgaataaagtacctgcagtggacctatatgtgtact 3075346
Query: 1210 ttgttcaagtgtgtatcatcatattcattcagatttataaagctagtagtgtatactgtc 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075345 ttgttcaagtgtgtatcatcatattcattcagatttataaagctagtagtgtatactgtc 3075286
Query: 1270 agaaacaccaactcagaattaggtgtacatttttaaatacctcctgcatatgaggctttc 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075285 agaaacaccaactcagaattaggtgtacatttttaaatacctcctgcatatgaggctttc 3075226
Query: 1330 tgttcctaatctttttaatgtgaataatttatatattgcacactccaggaaataatattg 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075225 tgttcctaatctttttaatgtgaataatttatatattgcacactccaggaaataatattg 3075166
Query: 1390 attgtatgtctcctgtgctgcagtat 1415
||||||||||||||||||||||||||
Sbjct: 3075165 attgtatgtctcctgtgctgcagtat 3075140
Score = 579 bits (292), Expect = e-162
Identities = 292/292 (100%)
Strand = Plus / Minus
Query: 1 gcgaccgcaggcccacgccgtaaacagagaacatggcggcggcagcgggggtacctgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222296 gcgaccgcaggcccacgccgtaaacagagaacatggcggcggcagcgggggtacctgggg 3222237
Query: 61 ccttaggtaccctgcgggcaggccgcgcccgcttggtggctgcttactgtgcggggatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222236 ccttaggtaccctgcgggcaggccgcgcccgcttggtggctgcttactgtgcggggatcg 3222177
Query: 121 gccccgggtggaggctccctggctcctggaccggcctgccggtagggccggccatctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222176 gccccgggtggaggctccctggctcctggaccggcctgccggtagggccggccatctggg 3222117
Query: 181 ctcggggctggacgcccgcggccgggggtgcggcctggcgaaggggctacagctctgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222116 ctcggggctggacgcccgcggccgggggtgcggcctggcgaaggggctacagctctgagg 3222057
Query: 241 cgaagacggaggacgagctgcgggtgcgatatctggaggaggagaaccgagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222056 cgaagacggaggacgagctgcgggtgcgatatctggaggaggagaaccgagg 3222005
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 683 aggggggacgcagcgactgccacgtgccatcgggatgtccctggccaaagagctcatttt 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086179 aggggggacgcagcgactgccacgtgccatcgggatgtccctggccaaagagctcatttt 3086120
Query: 743 ctctgcacgtgtgctcgatggccaagaagccaaagcagtgggcttgatcagccacgttct 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086119 ctctgcacgtgtgctcgatggccaagaagccaaagcagtgggcttgatcagccacgttct 3086060
Query: 803 agaacagaaccaggagggggacgctgcctacagaaaggccttggacctagcaagagagtt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086059 agaacagaaccaggagggggacgctgcctacagaaaggccttggacctagcaagagagtt 3086000
Query: 863 tttacctcagg 873
|||||||||||
Sbjct: 3085999 tttacctcagg 3085989
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 534 gctaatcttccagtgccaaccattgcagcaatagatggactcgctttaggtggtggactt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3161912 gctaatcttccagtgccaaccattgcagcaatagatggactcgctttaggtggtggactt 3161853
Query: 594 gaactggctttagcatgtgatataagagtagcag 627
||||||||||||||||||||||||||||||||||
Sbjct: 3161852 gaactggctttagcatgtgatataagagtagcag 3161819
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 359 gctgtcaaaagctgtggatgctttaaaatctgataagaaagtacggaccataatagtcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205662 gctgtcaaaagctgtggatgctttaaaatctgataagaaagtacggaccataatagtcag 3205603
Query: 419 aagtgaagtcccagggatattctgtgctggt 449
|||||||||||||||||||||||||||||||
Sbjct: 3205602 aagtgaagtcccagggatattctgtgctggt 3205572
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 447 ggtgctgaccttaaggaaagagtcaaaatgcattccagtgaagttggtccttttgtctcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194731 ggtgctgaccttaaggaaagagtcaaaatgcattccagtgaagttggtccttttgtctcc 3194672
Query: 507 aaattaagagcagtgattaatgaaatcg 534
||||||||||||||||||||||||||||
Sbjct: 3194671 aaattaagagcagtgattaatgaaatcg 3194644
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 290 aggaattgtggtgctcggaataaacagagcttatgccaaaaattcactgagtaaaaatct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205832 aggaattgtggtgctcggaataaacagagcttatgccaaaaattcactgagtaaaaatct 3205773
Query: 350 tgtaaaaatg 359
||||||||||
Sbjct: 3205772 tgtaaaaatg 3205763
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 626 agcttcctccgccaaaatgggcctggttgaaacaaagttggcaattattcctggtggagg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160153 agcttcctccgccaaaatgggcctggttgaaacaaagttggcaattattcctggtggagg 3160094
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 871 agggacctgttgcaataagagtggcaaaattagcaattaatcaagggatggaggt 925
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3081092 agggacctgttgcaataagagtggcaaaattagcaattaatcaagggatggaggt 3081038
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 922 aggttgatttagtaacaggattagccatagaagaagcttgttatgctcag 971
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3079992 aggttgatttagtaacaggattagccatagaagaagcttgttatgctcag 3079943
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,454,277
Number of extensions: 323
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 10
Length of query: 1456
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1435
Effective length of database: 2,808,413,156
Effective search space: 4030072878860
Effective search space used: 4030072878860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)