Animal-Genome cDNA 20110601C-012777


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012777
         (1353 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533117.2| PREDICTED: similar to ferredoxin reductase isof...   763   0.0  
Alignment   gi|XP_849721.1| PREDICTED: similar to ferredoxin reductase isof...   756   0.0  

>ref|XP_533117.2| PREDICTED: similar to ferredoxin reductase isoform 1 precursor
            isoform 1 [Canis familiaris].
          Length = 492

 Score =  763 bits (1969), Expect = 0.0
 Identities = 377/435 (86%), Positives = 386/435 (88%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MA RCWRWW WSAW R RPPP+G               PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MAPRCWRWWPWSAWRRARPPPAGSTPSFRQQFSTQEQPPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
            H RA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS RCAFHGNVVVGRDV V
Sbjct: 61   HPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSGRCAFHGNVVVGRDVAV 120

Query: 408  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
            PELQ AYHAVVLSYGAEDH+ALEIPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDTA
Sbjct: 121  PELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTA 180

Query: 588  VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 767
            VILGQGNVALDVARILLTPPE+LEKTDITEAALG LRQSRVKTVWIVGRRGPLQVAFTIK
Sbjct: 181  VILGQGNVALDVARILLTPPEYLEKTDITEAALGVLRQSRVKTVWIVGRRGPLQVAFTIK 240

Query: 768  ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXXX 947
            ELREMIQLPGTRPILDP DFLGLQDRIKEVPRPRKRL ELLLRTATE+PG          
Sbjct: 241  ELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPRKRLTELLLRTATERPGAEEAARQASA 300

Query: 948  XXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 1127
               WGLRF RSPQQVLPS DGRRAAGIRLAVTRLEGVGEA RAVPTGD EDLPCGLVLSS
Sbjct: 301  SRTWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGVGEAARAVPTGDSEDLPCGLVLSS 360

Query: 1128 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 1307
            +GYKSRPIDPSVPFD K GVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMTDSFLTGQ
Sbjct: 361  VGYKSRPIDPSVPFDSKRGVIPNMEGRVIDVPGLYCSGWVKRGPTGVIATTMTDSFLTGQ 420

Query: 1308 MLLQNLKAGLLPSGP 1352
            MLLQ+LKAGLLP GP
Sbjct: 421  MLLQDLKAGLLPLGP 435


>ref|XP_849721.1| PREDICTED: similar to ferredoxin reductase isoform 2 precursor
            isoform 2 [Canis familiaris].
          Length = 499

 Score =  756 bits (1951), Expect = 0.0
 Identities = 377/442 (85%), Positives = 386/442 (87%), Gaps = 7/442 (1%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MA RCWRWW WSAW R RPPP+G               PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MAPRCWRWWPWSAWRRARPPPAGSTPSFRQQFSTQEQPPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
            H RA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS RCAFHGNVVVGRDV V
Sbjct: 61   HPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSGRCAFHGNVVVGRDVAV 120

Query: 408  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
            PELQ AYHAVVLSYGAEDH+ALEIPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDTA
Sbjct: 121  PELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTA 180

Query: 588  VILGQGNVALDVARILLTPPEHLE-------KTDITEAALGALRQSRVKTVWIVGRRGPL 746
            VILGQGNVALDVARILLTPPE+LE       KTDITEAALG LRQSRVKTVWIVGRRGPL
Sbjct: 181  VILGQGNVALDVARILLTPPEYLEQALLLCQKTDITEAALGVLRQSRVKTVWIVGRRGPL 240

Query: 747  QVAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXX 926
            QVAFTIKELREMIQLPGTRPILDP DFLGLQDRIKEVPRPRKRL ELLLRTATE+PG   
Sbjct: 241  QVAFTIKELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPRKRLTELLLRTATERPGAEE 300

Query: 927  XXXXXXXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLP 1106
                      WGLRF RSPQQVLPS DGRRAAGIRLAVTRLEGVGEA RAVPTGD EDLP
Sbjct: 301  AARQASASRTWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGVGEAARAVPTGDSEDLP 360

Query: 1107 CGLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMT 1286
            CGLVLSS+GYKSRPIDPSVPFD K GVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMT
Sbjct: 361  CGLVLSSVGYKSRPIDPSVPFDSKRGVIPNMEGRVIDVPGLYCSGWVKRGPTGVIATTMT 420

Query: 1287 DSFLTGQMLLQNLKAGLLPSGP 1352
            DSFLTGQMLLQ+LKAGLLP GP
Sbjct: 421  DSFLTGQMLLQDLKAGLLPLGP 442


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,158,699
Number of extensions: 2039230
Number of successful extensions: 9355
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9312
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 345
Effective length of database: 15,340,888
Effective search space: 5292606360
Effective search space used: 5292606360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012777

Animal-Genome cDNA 20110601C-012777


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012777
         (1353 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777116.1| NADPH:adrenodoxin oxidoreductase, mitochondrial...   653   0.0  
Alignment   gi|XP_001255821.1| PREDICTED: FDXR protein-like, partial [Bos t...   220   2e-57

>ref|NP_777116.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor [Bos
            taurus].
          Length = 492

 Score =  653 bits (1684), Expect = 0.0
 Identities = 337/436 (77%), Positives = 355/436 (81%), Gaps = 1/436 (0%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MA RCWRWW WS+W RTR PPS                PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MAPRCWRWWPWSSWTRTRLPPSRSIQNFGQHFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
            HSRA VDIYEKQLVPF LVR  +A   P  + ++NTFTQTARSDRCAF+GNV VGRDVTV
Sbjct: 61   HSRAHVDIYEKQLVPFRLVRVWLALTTPRSRMLLNTFTQTARSDRCAFYGNVEVGRDVTV 120

Query: 408  PELQE-AYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDT 584
             EL+     AVVLSYGAEDH+AL+IPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDT
Sbjct: 121  QELRVYRLTAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDT 180

Query: 585  AVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI 764
            AVILGQGNVALDVARILLTPP+HLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI
Sbjct: 181  AVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI 240

Query: 765  KELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXX 944
            KELREMIQLPGTRP+LDPADFLGLQDRI+E  RPRKRLMELLLRTATEKPG         
Sbjct: 241  KELREMIQLPGTRPMLDPADFLGLQDRIREAARPRKRLMELLLRTATEKPGVEEAARRAS 300

Query: 945  XXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLS 1124
                WGLRF RSPQQVL   DG RA         LEG+GEA            PCGLVLS
Sbjct: 301  ASRAWGLRFFRSPQQVLRLPDG-RARRSAWQSPELEGIGEAHPGSAHWGCGGPPCGLVLS 359

Query: 1125 SIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTG 1304
            SIGYKSRPIDPSVPFD KLGV+PN EGRVVD+PGLYCSGWVKRGPTGVITTTMTDSFLTG
Sbjct: 360  SIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTG 419

Query: 1305 QMLLQNLKAGLLPSGP 1352
            Q+LLQ+LKAG LPSGP
Sbjct: 420  QILLQDLKAGHLPSGP 435


>ref|XP_001255821.1| PREDICTED: FDXR protein-like, partial [Bos taurus].
          Length = 132

 Score =  220 bits (561), Expect = 2e-57
 Identities = 105/132 (79%), Positives = 109/132 (82%)
 Frame = +3

Query: 48  MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
           MA RCWRWW WS+W RTR PPS                PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1   MAPRCWRWWPWSSWTRTRLPPSRSIQNFGQHFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60

Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
           HSRA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAF+GNV VGRDVTV
Sbjct: 61  HSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTV 120

Query: 408 PELQEAYHAVVL 443
            EL++AYHAVVL
Sbjct: 121 QELRDAYHAVVL 132


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,764,087
Number of extensions: 1984373
Number of successful extensions: 9140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9087
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 345
Effective length of database: 14,174,046
Effective search space: 4890045870
Effective search space used: 4890045870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012777
         (1353 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131271.1| PREDICTED: NADPH:adrenodoxin oxidoreductase,...   820   0.0  
Alignment   gi|XP_003131272.1| PREDICTED: NADPH:adrenodoxin oxidoreductase,...   814   0.0  

>ref|XP_003131271.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like
            isoform 1 [Sus scrofa].
          Length = 492

 Score =  820 bits (2119), Expect = 0.0
 Identities = 406/435 (93%), Positives = 407/435 (93%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MALRCWRWWHWSAWPRTRPPPSG               PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MALRCWRWWHWSAWPRTRPPPSGSTQSFRQQFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
            HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV
Sbjct: 61   HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 120

Query: 408  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
            PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA
Sbjct: 121  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 180

Query: 588  VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 767
            VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK
Sbjct: 181  VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 240

Query: 768  ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXXX 947
            ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPG          
Sbjct: 241  ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGAEEAARRASA 300

Query: 948  XXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 1127
               WGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS
Sbjct: 301  SRAWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 360

Query: 1128 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 1307
            IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ
Sbjct: 361  IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 420

Query: 1308 MLLQNLKAGLLPSGP 1352
            MLLQ+LKAGLLPSGP
Sbjct: 421  MLLQDLKAGLLPSGP 435


>ref|XP_003131272.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like
            isoform 2 [Sus scrofa].
          Length = 498

 Score =  814 bits (2102), Expect = 0.0
 Identities = 406/441 (92%), Positives = 407/441 (92%), Gaps = 6/441 (1%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MALRCWRWWHWSAWPRTRPPPSG               PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MALRCWRWWHWSAWPRTRPPPSGSTQSFRQQFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
            HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV
Sbjct: 61   HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 120

Query: 408  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
            PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA
Sbjct: 121  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 180

Query: 588  VILGQGNVALDVARILLTPPEHLE------KTDITEAALGALRQSRVKTVWIVGRRGPLQ 749
            VILGQGNVALDVARILLTPPEHLE      KTDITEAALGALRQSRVKTVWIVGRRGPLQ
Sbjct: 181  VILGQGNVALDVARILLTPPEHLEVLLLCQKTDITEAALGALRQSRVKTVWIVGRRGPLQ 240

Query: 750  VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXX 929
            VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPG    
Sbjct: 241  VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGAEEA 300

Query: 930  XXXXXXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC 1109
                     WGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC
Sbjct: 301  ARRASASRAWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC 360

Query: 1110 GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD 1289
            GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD
Sbjct: 361  GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD 420

Query: 1290 SFLTGQMLLQNLKAGLLPSGP 1352
            SFLTGQMLLQ+LKAGLLPSGP
Sbjct: 421  SFLTGQMLLQDLKAGLLPSGP 441


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,323,843
Number of extensions: 1283919
Number of successful extensions: 5762
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5727
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,804,438
Effective search space: 3072748862
Effective search space used: 3072748862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012777
         (1353 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032023.1| NADPH:adrenodoxin oxidoreductase, mitochondrial...   742   0.0  

>ref|NP_032023.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor [Mus
            musculus].
          Length = 494

 Score =  742 bits (1916), Expect = 0.0
 Identities = 369/437 (84%), Positives = 385/437 (88%), Gaps = 2/437 (0%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXX--PQICVVGSGPAGFYTAQHLL 221
            MA RCW WW WSAW   RP PS                  PQICVVGSGPAGFYTAQHLL
Sbjct: 1    MAPRCWHWWRWSAWSGLRPSPSRSTPTPGFCQKFSTQEKTPQICVVGSGPAGFYTAQHLL 60

Query: 222  KHHSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDV 401
            KHH+ A VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAF GNVVVGRDV
Sbjct: 61   KHHTHAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFQGNVVVGRDV 120

Query: 402  TVPELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCD 581
            +VPEL+EAYHAVVLSYGAEDH+ L IPGEELPGV SARAFVGWYNGLPENQELAPDLSCD
Sbjct: 121  SVPELREAYHAVVLSYGAEDHQPLGIPGEELPGVVSARAFVGWYNGLPENQELAPDLSCD 180

Query: 582  TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT 761
            TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT
Sbjct: 181  TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT 240

Query: 762  IKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXX 941
            IKELREMIQLPGTRPILDP+DFLGLQDRIK+VPRPR+RL ELLLRTATEKPG        
Sbjct: 241  IKELREMIQLPGTRPILDPSDFLGLQDRIKDVPRPRRRLTELLLRTATEKPGVEEAARQA 300

Query: 942  XXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVL 1121
                 WGLRF RSPQQVLP+ DG+R AGIRLAVT LEGVGE+TRAVPTGDVEDLPCGL+L
Sbjct: 301  LASRAWGLRFFRSPQQVLPTPDGQRVAGIRLAVTSLEGVGESTRAVPTGDVEDLPCGLLL 360

Query: 1122 SSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLT 1301
            SS+GYKSRPIDPSVPFD KLGVIPNTEGRVV++PGLYCSGWVKRGPTGVITTTMTDSFLT
Sbjct: 361  SSVGYKSRPIDPSVPFDPKLGVIPNTEGRVVNVPGLYCSGWVKRGPTGVITTTMTDSFLT 420

Query: 1302 GQMLLQNLKAGLLPSGP 1352
             Q LL++LKAGLLPSGP
Sbjct: 421  SQALLEDLKAGLLPSGP 437


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,813,904
Number of extensions: 1616323
Number of successful extensions: 7090
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7049
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 346
Effective length of database: 12,463,779
Effective search space: 4312467534
Effective search space used: 4312467534
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012777
         (1353 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_077728.2| NADPH:adrenodoxin oxidoreductase, mitochondrial...   746   0.0  
Alignment   gi|NP_004101.2| NADPH:adrenodoxin oxidoreductase, mitochondrial...   740   0.0  

>ref|NP_077728.2| NADPH:adrenodoxin oxidoreductase, mitochondrial isoform 1 precursor
            [Homo sapiens].
          Length = 491

 Score =  746 bits (1927), Expect = 0.0
 Identities = 371/435 (85%), Positives = 384/435 (88%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MA RCWRWW WSAWPRTR PP+G               PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
              +A VDIYEKQ VPFGLVRFGVAPDHPEVKNVINTFTQTA S RCAF GNV VGRDVTV
Sbjct: 61   -PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTV 119

Query: 408  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
            PEL+EAYHAVVLSYGAEDHRALEIPGEELPGV SARAFVGWYNGLPENQEL PDLSCDTA
Sbjct: 120  PELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTA 179

Query: 588  VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 767
            VILGQGNVALDVARILLTPPEHLE+TDIT+AALG LRQSRVKTVW+VGRRGPLQVAFTIK
Sbjct: 180  VILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQSRVKTVWLVGRRGPLQVAFTIK 239

Query: 768  ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXXX 947
            ELREMIQLPG RPILDP DFLGLQD+IKEVPRPRKRL ELLLRTATEKPG          
Sbjct: 240  ELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEAARQASA 299

Query: 948  XXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 1127
               WGLRF RSPQQVLPS DGRRAAG+RLAVTRLEGV EATRAVPTGD+EDLPCGLVLSS
Sbjct: 300  SRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTRLEGVDEATRAVPTGDMEDLPCGLVLSS 359

Query: 1128 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 1307
            IGYKSRP+DPSVPFD KLGVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMTDSFLTGQ
Sbjct: 360  IGYKSRPVDPSVPFDSKLGVIPNVEGRVMDVPGLYCSGWVKRGPTGVIATTMTDSFLTGQ 419

Query: 1308 MLLQNLKAGLLPSGP 1352
            MLLQ+LKAGLLPSGP
Sbjct: 420  MLLQDLKAGLLPSGP 434


>ref|NP_004101.2| NADPH:adrenodoxin oxidoreductase, mitochondrial isoform 2 precursor
            [Homo sapiens].
          Length = 497

 Score =  740 bits (1910), Expect = 0.0
 Identities = 371/441 (84%), Positives = 384/441 (87%), Gaps = 6/441 (1%)
 Frame = +3

Query: 48   MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
            MA RCWRWW WSAWPRTR PP+G               PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1    MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLKH 60

Query: 228  HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
              +A VDIYEKQ VPFGLVRFGVAPDHPEVKNVINTFTQTA S RCAF GNV VGRDVTV
Sbjct: 61   -PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTV 119

Query: 408  PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
            PEL+EAYHAVVLSYGAEDHRALEIPGEELPGV SARAFVGWYNGLPENQEL PDLSCDTA
Sbjct: 120  PELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTA 179

Query: 588  VILGQGNVALDVARILLTPPEHLE------KTDITEAALGALRQSRVKTVWIVGRRGPLQ 749
            VILGQGNVALDVARILLTPPEHLE      +TDIT+AALG LRQSRVKTVW+VGRRGPLQ
Sbjct: 180  VILGQGNVALDVARILLTPPEHLEALLLCQRTDITKAALGVLRQSRVKTVWLVGRRGPLQ 239

Query: 750  VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXX 929
            VAFTIKELREMIQLPG RPILDP DFLGLQD+IKEVPRPRKRL ELLLRTATEKPG    
Sbjct: 240  VAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEA 299

Query: 930  XXXXXXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC 1109
                     WGLRF RSPQQVLPS DGRRAAG+RLAVTRLEGV EATRAVPTGD+EDLPC
Sbjct: 300  ARQASASRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTRLEGVDEATRAVPTGDMEDLPC 359

Query: 1110 GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD 1289
            GLVLSSIGYKSRP+DPSVPFD KLGVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMTD
Sbjct: 360  GLVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVMDVPGLYCSGWVKRGPTGVIATTMTD 419

Query: 1290 SFLTGQMLLQNLKAGLLPSGP 1352
            SFLTGQMLLQ+LKAGLLPSGP
Sbjct: 420  SFLTGQMLLQDLKAGLLPSGP 440


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,750,323
Number of extensions: 1969617
Number of successful extensions: 8824
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8778
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 345
Effective length of database: 14,802,980
Effective search space: 5107028100
Effective search space used: 5107028100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012777
         (1353 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         400   e-109

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  400 bits (202), Expect = e-109
 Identities = 202/202 (100%)
 Strand = Plus / Plus

                                                                           
Query: 852     gaggtccctcgaccgaggaagcggctgatggaacttctgcttcggacagccacggagaag 911
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371317 gaggtccctcgaccgaggaagcggctgatggaacttctgcttcggacagccacggagaag 6371376

                                                                           
Query: 912     ccaggggcagaggaggctgcccgccgggcatcggcctcccgcgcctggggcctccgcttt 971
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371377 ccaggggcagaggaggctgcccgccgggcatcggcctcccgcgcctggggcctccgcttt 6371436

                                                                           
Query: 972     tcccgaagcccacagcaggtgctgccctcggcagatggacggcgggcagcaggcatccgc 1031
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371437 tcccgaagcccacagcaggtgctgccctcggcagatggacggcgggcagcaggcatccgc 6371496

                                     
Query: 1032    ctggcagtcaccaggctggagg 1053
               ||||||||||||||||||||||
Sbjct: 6371497 ctggcagtcaccaggctggagg 6371518



 Score =  347 bits (175), Expect = 1e-92
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1051    agggtgtcggtgaggccacccgggcagtgcccactggagacgtggaggacctcccttgtg 1110
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371608 agggtgtcggtgaggccacccgggcagtgcccactggagacgtggaggacctcccttgtg 6371667

                                                                           
Query: 1111    ggctggtgctgagcagcatagggtataagagccgccccatcgaccccagtgtgccctttg 1170
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371668 ggctggtgctgagcagcatagggtataagagccgccccatcgaccccagtgtgccctttg 6371727

                                                                      
Query: 1171    acctcaaacttggggtcatccccaatacggagggccgggttgtggatatgccagg 1225
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371728 acctcaaacttggggtcatccccaatacggagggccgggttgtggatatgccagg 6371782



 Score =  248 bits (125), Expect = 7e-63
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                           
Query: 319     agaatgtcatcaacacctttacccagacggcccgctctgaccgctgtgccttccatggca 378
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369260 agaatgtcatcaacacctttacccagacggcccgctctgaccgctgtgccttccatggca 6369319

                                                                           
Query: 379     atgtggtagtgggcagggatgtgaccgtgccggagctgcaggaggcctaccacgccgtgg 438
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369320 atgtggtagtgggcagggatgtgaccgtgccggagctgcaggaggcctaccacgccgtgg 6369379

                    
Query: 439     tgctg 443
               |||||
Sbjct: 6369380 tgctg 6369384



 Score =  244 bits (123), Expect = 1e-61
 Identities = 126/127 (99%)
 Strand = Plus / Plus

                                                                           
Query: 1       gggcggtcagagcgatcggatctgcaagctggttactcttctcaggaatggctctgcgct 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362756 gggcggtcagagcgatcggatctgcaagctggttactcttctcaggaatggctctgcgct 6362815

                                                                           
Query: 61      gctggcgctggtggcactggtcggcgtggcctcggacccggccgcctccttccgggagca 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362816 gctggcgctggtggcactggtcggcgtggcctcggacccggccgcctccttccgggagca 6362875

                      
Query: 121     cacagag 127
               | |||||
Sbjct: 6362876 cccagag 6362882



 Score =  240 bits (121), Expect = 2e-60
 Identities = 130/133 (97%)
 Strand = Plus / Plus

                                                                           
Query: 1221    ccaggcctctactgcagcggctgggtgaagcgaggacccacaggtgtcatcacgaccacc 1280
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6372483 ccaggcctctactgcagcggctgggtgaagcgaggacccacaggtgtcatcacgaccacc 6372542

                                                                           
Query: 1281    atgaccgacagcttcctcactggccagatgctgctgcagaacctgaaagctgggctgctg 1340
               ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 6372543 atgaccgacagcttcctcactggccagatgctgctgcaggacctgaaggctgggctgctg 6372602

                            
Query: 1341    ccctctggcccca 1353
               || ||||||||||
Sbjct: 6372603 ccgtctggcccca 6372615



 Score =  220 bits (111), Expect = 2e-54
 Identities = 114/115 (99%)
 Strand = Plus / Plus

                                                                           
Query: 443     gagctatggggcggaggaccatcgggccctggaaatccctggggaggagctgcctggcgt 502
               |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6369565 gagctatggggcggaggaccatcgggccctggaaatccctggggaggagctgcccggcgt 6369624

                                                                      
Query: 503     gttctcagcccgggcatttgtgggctggtacaatgggcttcctgagaaccaggag 557
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369625 gttctcagcccgggcatttgtgggctggtacaatgggcttcctgagaaccaggag 6369679



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                           
Query: 658     agaaaacggacatcacagaggctgccctgggggcgctgagacagagtcgggtgaagacgg 717
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370738 agaaaacggacatcacagaggctgccctgggggcgctgagacagagtcgggtgaagacgg 6370797

                                                                  
Query: 718     tgtggatagtaggccgccgtggacccctgcaagtggccttcaccattaagg 768
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370798 tgtggatagtaggccgccgtggacccctgcaagtggccttcaccattaagg 6370848



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                           
Query: 556     agctggcgccggacctgagctgtgacacagctgtgattctggggcaggggaacgtggctc 615
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369908 agctggcgccggacctgagctgtgacacagctgtgattctggggcaggggaacgtggctc 6369967

                                                           
Query: 616     tggacgtggcccggatcctgctgacccctcctgagcacctggag 659
               ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369968 tggacgtggcccggatcctgctgacccctcctgagcacctggag 6370011



 Score =  194 bits (98), Expect = 9e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                           
Query: 127     gcttccgccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtg 186
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6363663 gcttccgccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtg 6363722

                                                     
Query: 187     gcccagctggcttttacacggcccaacacctgctaaag 224
               ||||||||||||||||||||||||||||||||||||||
Sbjct: 6363723 gcccagctggcttttacacggcccaacacctgctaaag 6363760



 Score =  194 bits (98), Expect = 9e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                           
Query: 223     agcaccactcccgggcccgtgtggacatctatgagaagcagctcgtgcccttcggcctgg 282
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6368719 agcaccactcccgggcccgtgtggacatctatgagaagcagctcgtgcccttcggcctgg 6368778

                                                     
Query: 283     tgcgctttggcgtggcgcccgaccatcctgaggtcaag 320
               ||||||||||||||||||||||||||||||||||||||
Sbjct: 6368779 tgcgctttggcgtggcgcccgaccatcctgaggtcaag 6368816



 Score =  176 bits (89), Expect = 2e-41
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                           
Query: 764     taaggagcttcgggagatgattcagttaccaggaactcggcccattttggatcctgcgga 823
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371100 taaggagcttcgggagatgattcagttaccaggaactcggcccattttggatcctgcgga 6371159

                                            
Query: 824     tttcttgggcctccaggacagaatcaagg 852
               |||||||||||||||||||||||||||||
Sbjct: 6371160 tttcttgggcctccaggacagaatcaagg 6371188



 Score =  103 bits (52), Expect = 2e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                           
Query: 133     gccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtggcccag 192
               ||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||| 
Sbjct: 6380101 gccagcaattttccacacaggagcagacccgccagatctgtgtggtggtcagtgccccat 6380042

                                               
Query: 193     ctggcttttacacggcccaacacctgctaaag 224
               |||| ||||||||||| | ||||| |||||||
Sbjct: 6380041 ctggattttacacggcgctacaccggctaaag 6380010


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,797,836
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 12
Length of query: 1353
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1332
Effective length of database: 2,808,413,156
Effective search space: 3740806323792
Effective search space used: 3740806323792
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)