Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012777
(1353 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533117.2| PREDICTED: similar to ferredoxin reductase isof... 763 0.0
Alignment gi|XP_849721.1| PREDICTED: similar to ferredoxin reductase isof... 756 0.0
>ref|XP_533117.2| PREDICTED: similar to ferredoxin reductase isoform 1 precursor
isoform 1 [Canis familiaris].
Length = 492
Score = 763 bits (1969), Expect = 0.0
Identities = 377/435 (86%), Positives = 386/435 (88%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MA RCWRWW WSAW R RPPP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSAWRRARPPPAGSTPSFRQQFSTQEQPPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
H RA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS RCAFHGNVVVGRDV V
Sbjct: 61 HPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSGRCAFHGNVVVGRDVAV 120
Query: 408 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
PELQ AYHAVVLSYGAEDH+ALEIPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDTA
Sbjct: 121 PELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTA 180
Query: 588 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 767
VILGQGNVALDVARILLTPPE+LEKTDITEAALG LRQSRVKTVWIVGRRGPLQVAFTIK
Sbjct: 181 VILGQGNVALDVARILLTPPEYLEKTDITEAALGVLRQSRVKTVWIVGRRGPLQVAFTIK 240
Query: 768 ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXXX 947
ELREMIQLPGTRPILDP DFLGLQDRIKEVPRPRKRL ELLLRTATE+PG
Sbjct: 241 ELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPRKRLTELLLRTATERPGAEEAARQASA 300
Query: 948 XXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 1127
WGLRF RSPQQVLPS DGRRAAGIRLAVTRLEGVGEA RAVPTGD EDLPCGLVLSS
Sbjct: 301 SRTWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGVGEAARAVPTGDSEDLPCGLVLSS 360
Query: 1128 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 1307
+GYKSRPIDPSVPFD K GVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMTDSFLTGQ
Sbjct: 361 VGYKSRPIDPSVPFDSKRGVIPNMEGRVIDVPGLYCSGWVKRGPTGVIATTMTDSFLTGQ 420
Query: 1308 MLLQNLKAGLLPSGP 1352
MLLQ+LKAGLLP GP
Sbjct: 421 MLLQDLKAGLLPLGP 435
>ref|XP_849721.1| PREDICTED: similar to ferredoxin reductase isoform 2 precursor
isoform 2 [Canis familiaris].
Length = 499
Score = 756 bits (1951), Expect = 0.0
Identities = 377/442 (85%), Positives = 386/442 (87%), Gaps = 7/442 (1%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MA RCWRWW WSAW R RPPP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSAWRRARPPPAGSTPSFRQQFSTQEQPPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
H RA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS RCAFHGNVVVGRDV V
Sbjct: 61 HPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSGRCAFHGNVVVGRDVAV 120
Query: 408 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
PELQ AYHAVVLSYGAEDH+ALEIPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDTA
Sbjct: 121 PELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTA 180
Query: 588 VILGQGNVALDVARILLTPPEHLE-------KTDITEAALGALRQSRVKTVWIVGRRGPL 746
VILGQGNVALDVARILLTPPE+LE KTDITEAALG LRQSRVKTVWIVGRRGPL
Sbjct: 181 VILGQGNVALDVARILLTPPEYLEQALLLCQKTDITEAALGVLRQSRVKTVWIVGRRGPL 240
Query: 747 QVAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXX 926
QVAFTIKELREMIQLPGTRPILDP DFLGLQDRIKEVPRPRKRL ELLLRTATE+PG
Sbjct: 241 QVAFTIKELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPRKRLTELLLRTATERPGAEE 300
Query: 927 XXXXXXXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLP 1106
WGLRF RSPQQVLPS DGRRAAGIRLAVTRLEGVGEA RAVPTGD EDLP
Sbjct: 301 AARQASASRTWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGVGEAARAVPTGDSEDLP 360
Query: 1107 CGLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMT 1286
CGLVLSS+GYKSRPIDPSVPFD K GVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMT
Sbjct: 361 CGLVLSSVGYKSRPIDPSVPFDSKRGVIPNMEGRVIDVPGLYCSGWVKRGPTGVIATTMT 420
Query: 1287 DSFLTGQMLLQNLKAGLLPSGP 1352
DSFLTGQMLLQ+LKAGLLP GP
Sbjct: 421 DSFLTGQMLLQDLKAGLLPLGP 442
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,158,699
Number of extensions: 2039230
Number of successful extensions: 9355
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9312
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 345
Effective length of database: 15,340,888
Effective search space: 5292606360
Effective search space used: 5292606360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012777
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012777
(1353 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777116.1| NADPH:adrenodoxin oxidoreductase, mitochondrial... 653 0.0
Alignment gi|XP_001255821.1| PREDICTED: FDXR protein-like, partial [Bos t... 220 2e-57
>ref|NP_777116.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor [Bos
taurus].
Length = 492
Score = 653 bits (1684), Expect = 0.0
Identities = 337/436 (77%), Positives = 355/436 (81%), Gaps = 1/436 (0%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MA RCWRWW WS+W RTR PPS PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSSWTRTRLPPSRSIQNFGQHFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
HSRA VDIYEKQLVPF LVR +A P + ++NTFTQTARSDRCAF+GNV VGRDVTV
Sbjct: 61 HSRAHVDIYEKQLVPFRLVRVWLALTTPRSRMLLNTFTQTARSDRCAFYGNVEVGRDVTV 120
Query: 408 PELQE-AYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDT 584
EL+ AVVLSYGAEDH+AL+IPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDT
Sbjct: 121 QELRVYRLTAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDT 180
Query: 585 AVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI 764
AVILGQGNVALDVARILLTPP+HLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI
Sbjct: 181 AVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI 240
Query: 765 KELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXX 944
KELREMIQLPGTRP+LDPADFLGLQDRI+E RPRKRLMELLLRTATEKPG
Sbjct: 241 KELREMIQLPGTRPMLDPADFLGLQDRIREAARPRKRLMELLLRTATEKPGVEEAARRAS 300
Query: 945 XXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLS 1124
WGLRF RSPQQVL DG RA LEG+GEA PCGLVLS
Sbjct: 301 ASRAWGLRFFRSPQQVLRLPDG-RARRSAWQSPELEGIGEAHPGSAHWGCGGPPCGLVLS 359
Query: 1125 SIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTG 1304
SIGYKSRPIDPSVPFD KLGV+PN EGRVVD+PGLYCSGWVKRGPTGVITTTMTDSFLTG
Sbjct: 360 SIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTG 419
Query: 1305 QMLLQNLKAGLLPSGP 1352
Q+LLQ+LKAG LPSGP
Sbjct: 420 QILLQDLKAGHLPSGP 435
>ref|XP_001255821.1| PREDICTED: FDXR protein-like, partial [Bos taurus].
Length = 132
Score = 220 bits (561), Expect = 2e-57
Identities = 105/132 (79%), Positives = 109/132 (82%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MA RCWRWW WS+W RTR PPS PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSSWTRTRLPPSRSIQNFGQHFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
HSRA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAF+GNV VGRDVTV
Sbjct: 61 HSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTV 120
Query: 408 PELQEAYHAVVL 443
EL++AYHAVVL
Sbjct: 121 QELRDAYHAVVL 132
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,764,087
Number of extensions: 1984373
Number of successful extensions: 9140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9087
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 345
Effective length of database: 14,174,046
Effective search space: 4890045870
Effective search space used: 4890045870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012777
(1353 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131271.1| PREDICTED: NADPH:adrenodoxin oxidoreductase,... 820 0.0
Alignment gi|XP_003131272.1| PREDICTED: NADPH:adrenodoxin oxidoreductase,... 814 0.0
>ref|XP_003131271.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like
isoform 1 [Sus scrofa].
Length = 492
Score = 820 bits (2119), Expect = 0.0
Identities = 406/435 (93%), Positives = 407/435 (93%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MALRCWRWWHWSAWPRTRPPPSG PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MALRCWRWWHWSAWPRTRPPPSGSTQSFRQQFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV
Sbjct: 61 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 120
Query: 408 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA
Sbjct: 121 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 180
Query: 588 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 767
VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK
Sbjct: 181 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 240
Query: 768 ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXXX 947
ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPG
Sbjct: 241 ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGAEEAARRASA 300
Query: 948 XXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 1127
WGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS
Sbjct: 301 SRAWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 360
Query: 1128 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 1307
IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ
Sbjct: 361 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 420
Query: 1308 MLLQNLKAGLLPSGP 1352
MLLQ+LKAGLLPSGP
Sbjct: 421 MLLQDLKAGLLPSGP 435
>ref|XP_003131272.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like
isoform 2 [Sus scrofa].
Length = 498
Score = 814 bits (2102), Expect = 0.0
Identities = 406/441 (92%), Positives = 407/441 (92%), Gaps = 6/441 (1%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MALRCWRWWHWSAWPRTRPPPSG PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MALRCWRWWHWSAWPRTRPPPSGSTQSFRQQFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV
Sbjct: 61 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 120
Query: 408 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA
Sbjct: 121 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 180
Query: 588 VILGQGNVALDVARILLTPPEHLE------KTDITEAALGALRQSRVKTVWIVGRRGPLQ 749
VILGQGNVALDVARILLTPPEHLE KTDITEAALGALRQSRVKTVWIVGRRGPLQ
Sbjct: 181 VILGQGNVALDVARILLTPPEHLEVLLLCQKTDITEAALGALRQSRVKTVWIVGRRGPLQ 240
Query: 750 VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXX 929
VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPG
Sbjct: 241 VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGAEEA 300
Query: 930 XXXXXXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC 1109
WGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC
Sbjct: 301 ARRASASRAWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC 360
Query: 1110 GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD 1289
GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD
Sbjct: 361 GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD 420
Query: 1290 SFLTGQMLLQNLKAGLLPSGP 1352
SFLTGQMLLQ+LKAGLLPSGP
Sbjct: 421 SFLTGQMLLQDLKAGLLPSGP 441
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,323,843
Number of extensions: 1283919
Number of successful extensions: 5762
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5727
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,804,438
Effective search space: 3072748862
Effective search space used: 3072748862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012777
(1353 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032023.1| NADPH:adrenodoxin oxidoreductase, mitochondrial... 742 0.0
>ref|NP_032023.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor [Mus
musculus].
Length = 494
Score = 742 bits (1916), Expect = 0.0
Identities = 369/437 (84%), Positives = 385/437 (88%), Gaps = 2/437 (0%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXX--PQICVVGSGPAGFYTAQHLL 221
MA RCW WW WSAW RP PS PQICVVGSGPAGFYTAQHLL
Sbjct: 1 MAPRCWHWWRWSAWSGLRPSPSRSTPTPGFCQKFSTQEKTPQICVVGSGPAGFYTAQHLL 60
Query: 222 KHHSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDV 401
KHH+ A VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAF GNVVVGRDV
Sbjct: 61 KHHTHAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFQGNVVVGRDV 120
Query: 402 TVPELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCD 581
+VPEL+EAYHAVVLSYGAEDH+ L IPGEELPGV SARAFVGWYNGLPENQELAPDLSCD
Sbjct: 121 SVPELREAYHAVVLSYGAEDHQPLGIPGEELPGVVSARAFVGWYNGLPENQELAPDLSCD 180
Query: 582 TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT 761
TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT
Sbjct: 181 TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT 240
Query: 762 IKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXX 941
IKELREMIQLPGTRPILDP+DFLGLQDRIK+VPRPR+RL ELLLRTATEKPG
Sbjct: 241 IKELREMIQLPGTRPILDPSDFLGLQDRIKDVPRPRRRLTELLLRTATEKPGVEEAARQA 300
Query: 942 XXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVL 1121
WGLRF RSPQQVLP+ DG+R AGIRLAVT LEGVGE+TRAVPTGDVEDLPCGL+L
Sbjct: 301 LASRAWGLRFFRSPQQVLPTPDGQRVAGIRLAVTSLEGVGESTRAVPTGDVEDLPCGLLL 360
Query: 1122 SSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLT 1301
SS+GYKSRPIDPSVPFD KLGVIPNTEGRVV++PGLYCSGWVKRGPTGVITTTMTDSFLT
Sbjct: 361 SSVGYKSRPIDPSVPFDPKLGVIPNTEGRVVNVPGLYCSGWVKRGPTGVITTTMTDSFLT 420
Query: 1302 GQMLLQNLKAGLLPSGP 1352
Q LL++LKAGLLPSGP
Sbjct: 421 SQALLEDLKAGLLPSGP 437
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,813,904
Number of extensions: 1616323
Number of successful extensions: 7090
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7049
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 346
Effective length of database: 12,463,779
Effective search space: 4312467534
Effective search space used: 4312467534
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012777
(1353 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077728.2| NADPH:adrenodoxin oxidoreductase, mitochondrial... 746 0.0
Alignment gi|NP_004101.2| NADPH:adrenodoxin oxidoreductase, mitochondrial... 740 0.0
>ref|NP_077728.2| NADPH:adrenodoxin oxidoreductase, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 491
Score = 746 bits (1927), Expect = 0.0
Identities = 371/435 (85%), Positives = 384/435 (88%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MA RCWRWW WSAWPRTR PP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
+A VDIYEKQ VPFGLVRFGVAPDHPEVKNVINTFTQTA S RCAF GNV VGRDVTV
Sbjct: 61 -PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTV 119
Query: 408 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
PEL+EAYHAVVLSYGAEDHRALEIPGEELPGV SARAFVGWYNGLPENQEL PDLSCDTA
Sbjct: 120 PELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTA 179
Query: 588 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 767
VILGQGNVALDVARILLTPPEHLE+TDIT+AALG LRQSRVKTVW+VGRRGPLQVAFTIK
Sbjct: 180 VILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQSRVKTVWLVGRRGPLQVAFTIK 239
Query: 768 ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXXXXXXXX 947
ELREMIQLPG RPILDP DFLGLQD+IKEVPRPRKRL ELLLRTATEKPG
Sbjct: 240 ELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEAARQASA 299
Query: 948 XXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSS 1127
WGLRF RSPQQVLPS DGRRAAG+RLAVTRLEGV EATRAVPTGD+EDLPCGLVLSS
Sbjct: 300 SRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTRLEGVDEATRAVPTGDMEDLPCGLVLSS 359
Query: 1128 IGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 1307
IGYKSRP+DPSVPFD KLGVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMTDSFLTGQ
Sbjct: 360 IGYKSRPVDPSVPFDSKLGVIPNVEGRVMDVPGLYCSGWVKRGPTGVIATTMTDSFLTGQ 419
Query: 1308 MLLQNLKAGLLPSGP 1352
MLLQ+LKAGLLPSGP
Sbjct: 420 MLLQDLKAGLLPSGP 434
>ref|NP_004101.2| NADPH:adrenodoxin oxidoreductase, mitochondrial isoform 2 precursor
[Homo sapiens].
Length = 497
Score = 740 bits (1910), Expect = 0.0
Identities = 371/441 (84%), Positives = 384/441 (87%), Gaps = 6/441 (1%)
Frame = +3
Query: 48 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 227
MA RCWRWW WSAWPRTR PP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLKH 60
Query: 228 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 407
+A VDIYEKQ VPFGLVRFGVAPDHPEVKNVINTFTQTA S RCAF GNV VGRDVTV
Sbjct: 61 -PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTV 119
Query: 408 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 587
PEL+EAYHAVVLSYGAEDHRALEIPGEELPGV SARAFVGWYNGLPENQEL PDLSCDTA
Sbjct: 120 PELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTA 179
Query: 588 VILGQGNVALDVARILLTPPEHLE------KTDITEAALGALRQSRVKTVWIVGRRGPLQ 749
VILGQGNVALDVARILLTPPEHLE +TDIT+AALG LRQSRVKTVW+VGRRGPLQ
Sbjct: 180 VILGQGNVALDVARILLTPPEHLEALLLCQRTDITKAALGVLRQSRVKTVWLVGRRGPLQ 239
Query: 750 VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGXXXX 929
VAFTIKELREMIQLPG RPILDP DFLGLQD+IKEVPRPRKRL ELLLRTATEKPG
Sbjct: 240 VAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEA 299
Query: 930 XXXXXXXXXWGLRFSRSPQQVLPSADGRRAAGIRLAVTRLEGVGEATRAVPTGDVEDLPC 1109
WGLRF RSPQQVLPS DGRRAAG+RLAVTRLEGV EATRAVPTGD+EDLPC
Sbjct: 300 ARQASASRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTRLEGVDEATRAVPTGDMEDLPC 359
Query: 1110 GLVLSSIGYKSRPIDPSVPFDLKLGVIPNTEGRVVDMPGLYCSGWVKRGPTGVITTTMTD 1289
GLVLSSIGYKSRP+DPSVPFD KLGVIPN EGRV+D+PGLYCSGWVKRGPTGVI TTMTD
Sbjct: 360 GLVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVMDVPGLYCSGWVKRGPTGVIATTMTD 419
Query: 1290 SFLTGQMLLQNLKAGLLPSGP 1352
SFLTGQMLLQ+LKAGLLPSGP
Sbjct: 420 SFLTGQMLLQDLKAGLLPSGP 440
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,750,323
Number of extensions: 1969617
Number of successful extensions: 8824
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8778
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 345
Effective length of database: 14,802,980
Effective search space: 5107028100
Effective search space used: 5107028100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012777
(1353 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 400 e-109
>Sscrofa_Chr12
|| Length = 63588571
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 852 gaggtccctcgaccgaggaagcggctgatggaacttctgcttcggacagccacggagaag 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371317 gaggtccctcgaccgaggaagcggctgatggaacttctgcttcggacagccacggagaag 6371376
Query: 912 ccaggggcagaggaggctgcccgccgggcatcggcctcccgcgcctggggcctccgcttt 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371377 ccaggggcagaggaggctgcccgccgggcatcggcctcccgcgcctggggcctccgcttt 6371436
Query: 972 tcccgaagcccacagcaggtgctgccctcggcagatggacggcgggcagcaggcatccgc 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371437 tcccgaagcccacagcaggtgctgccctcggcagatggacggcgggcagcaggcatccgc 6371496
Query: 1032 ctggcagtcaccaggctggagg 1053
||||||||||||||||||||||
Sbjct: 6371497 ctggcagtcaccaggctggagg 6371518
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1051 agggtgtcggtgaggccacccgggcagtgcccactggagacgtggaggacctcccttgtg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371608 agggtgtcggtgaggccacccgggcagtgcccactggagacgtggaggacctcccttgtg 6371667
Query: 1111 ggctggtgctgagcagcatagggtataagagccgccccatcgaccccagtgtgccctttg 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371668 ggctggtgctgagcagcatagggtataagagccgccccatcgaccccagtgtgccctttg 6371727
Query: 1171 acctcaaacttggggtcatccccaatacggagggccgggttgtggatatgccagg 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371728 acctcaaacttggggtcatccccaatacggagggccgggttgtggatatgccagg 6371782
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 319 agaatgtcatcaacacctttacccagacggcccgctctgaccgctgtgccttccatggca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369260 agaatgtcatcaacacctttacccagacggcccgctctgaccgctgtgccttccatggca 6369319
Query: 379 atgtggtagtgggcagggatgtgaccgtgccggagctgcaggaggcctaccacgccgtgg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369320 atgtggtagtgggcagggatgtgaccgtgccggagctgcaggaggcctaccacgccgtgg 6369379
Query: 439 tgctg 443
|||||
Sbjct: 6369380 tgctg 6369384
Score = 244 bits (123), Expect = 1e-61
Identities = 126/127 (99%)
Strand = Plus / Plus
Query: 1 gggcggtcagagcgatcggatctgcaagctggttactcttctcaggaatggctctgcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362756 gggcggtcagagcgatcggatctgcaagctggttactcttctcaggaatggctctgcgct 6362815
Query: 61 gctggcgctggtggcactggtcggcgtggcctcggacccggccgcctccttccgggagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362816 gctggcgctggtggcactggtcggcgtggcctcggacccggccgcctccttccgggagca 6362875
Query: 121 cacagag 127
| |||||
Sbjct: 6362876 cccagag 6362882
Score = 240 bits (121), Expect = 2e-60
Identities = 130/133 (97%)
Strand = Plus / Plus
Query: 1221 ccaggcctctactgcagcggctgggtgaagcgaggacccacaggtgtcatcacgaccacc 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6372483 ccaggcctctactgcagcggctgggtgaagcgaggacccacaggtgtcatcacgaccacc 6372542
Query: 1281 atgaccgacagcttcctcactggccagatgctgctgcagaacctgaaagctgggctgctg 1340
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 6372543 atgaccgacagcttcctcactggccagatgctgctgcaggacctgaaggctgggctgctg 6372602
Query: 1341 ccctctggcccca 1353
|| ||||||||||
Sbjct: 6372603 ccgtctggcccca 6372615
Score = 220 bits (111), Expect = 2e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 443 gagctatggggcggaggaccatcgggccctggaaatccctggggaggagctgcctggcgt 502
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6369565 gagctatggggcggaggaccatcgggccctggaaatccctggggaggagctgcccggcgt 6369624
Query: 503 gttctcagcccgggcatttgtgggctggtacaatgggcttcctgagaaccaggag 557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369625 gttctcagcccgggcatttgtgggctggtacaatgggcttcctgagaaccaggag 6369679
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 658 agaaaacggacatcacagaggctgccctgggggcgctgagacagagtcgggtgaagacgg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370738 agaaaacggacatcacagaggctgccctgggggcgctgagacagagtcgggtgaagacgg 6370797
Query: 718 tgtggatagtaggccgccgtggacccctgcaagtggccttcaccattaagg 768
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370798 tgtggatagtaggccgccgtggacccctgcaagtggccttcaccattaagg 6370848
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 556 agctggcgccggacctgagctgtgacacagctgtgattctggggcaggggaacgtggctc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369908 agctggcgccggacctgagctgtgacacagctgtgattctggggcaggggaacgtggctc 6369967
Query: 616 tggacgtggcccggatcctgctgacccctcctgagcacctggag 659
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369968 tggacgtggcccggatcctgctgacccctcctgagcacctggag 6370011
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 127 gcttccgccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6363663 gcttccgccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtg 6363722
Query: 187 gcccagctggcttttacacggcccaacacctgctaaag 224
||||||||||||||||||||||||||||||||||||||
Sbjct: 6363723 gcccagctggcttttacacggcccaacacctgctaaag 6363760
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 223 agcaccactcccgggcccgtgtggacatctatgagaagcagctcgtgcccttcggcctgg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6368719 agcaccactcccgggcccgtgtggacatctatgagaagcagctcgtgcccttcggcctgg 6368778
Query: 283 tgcgctttggcgtggcgcccgaccatcctgaggtcaag 320
||||||||||||||||||||||||||||||||||||||
Sbjct: 6368779 tgcgctttggcgtggcgcccgaccatcctgaggtcaag 6368816
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 764 taaggagcttcgggagatgattcagttaccaggaactcggcccattttggatcctgcgga 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371100 taaggagcttcgggagatgattcagttaccaggaactcggcccattttggatcctgcgga 6371159
Query: 824 tttcttgggcctccaggacagaatcaagg 852
|||||||||||||||||||||||||||||
Sbjct: 6371160 tttcttgggcctccaggacagaatcaagg 6371188
Score = 103 bits (52), Expect = 2e-19
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 133 gccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtggcccag 192
||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 6380101 gccagcaattttccacacaggagcagacccgccagatctgtgtggtggtcagtgccccat 6380042
Query: 193 ctggcttttacacggcccaacacctgctaaag 224
|||| ||||||||||| | ||||| |||||||
Sbjct: 6380041 ctggattttacacggcgctacaccggctaaag 6380010
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,797,836
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 12
Length of query: 1353
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1332
Effective length of database: 2,808,413,156
Effective search space: 3740806323792
Effective search space used: 3740806323792
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)