Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012778
(996 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777116.1| NADPH:adrenodoxin oxidoreductase, mitochondrial... 478 e-135
Alignment gi|XP_001255821.1| PREDICTED: FDXR protein-like, partial [Bos t... 220 1e-57
>ref|NP_777116.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor [Bos
taurus].
Length = 492
Score = 478 bits (1231), Expect = e-135
Identities = 242/305 (79%), Positives = 257/305 (84%), Gaps = 1/305 (0%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MA RCWRWW WS+W RTR PPS PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSSWTRTRLPPSRSIQNFGQHFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
HSRA VDIYEKQLVPF LVR +A P + ++NTFTQTARSDRCAF+GNV VGRDVTV
Sbjct: 61 HSRAHVDIYEKQLVPFRLVRVWLALTTPRSRMLLNTFTQTARSDRCAFYGNVEVGRDVTV 120
Query: 443 PELQE-AYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDT 619
EL+ AVVLSYGAEDH+AL+IPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDT
Sbjct: 121 QELRVYRLTAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDT 180
Query: 620 AVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI 799
AVILGQGNVALDVARILLTPP+HLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI
Sbjct: 181 AVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTI 240
Query: 800 KELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEVARRES 979
KELREMIQLPGTRP+LDPADFLG QDRI+E RP+K LMELL ATE PG +E ARR S
Sbjct: 241 KELREMIQLPGTRPMLDPADFLGLQDRIREAARPRKRLMELLLRTATEKPGVEEAARRAS 300
Query: 980 ASRAW 994
ASRAW
Sbjct: 301 ASRAW 305
>ref|XP_001255821.1| PREDICTED: FDXR protein-like, partial [Bos taurus].
Length = 132
Score = 220 bits (561), Expect = 1e-57
Identities = 105/132 (79%), Positives = 109/132 (82%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MA RCWRWW WS+W RTR PPS PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSSWTRTRLPPSRSIQNFGQHFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
HSRA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAF+GNV VGRDVTV
Sbjct: 61 HSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTV 120
Query: 443 PELQEAYHAVVL 478
EL++AYHAVVL
Sbjct: 121 QELRDAYHAVVL 132
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,677,193
Number of extensions: 1453171
Number of successful extensions: 6669
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6630
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012778
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012778
(996 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533117.2| PREDICTED: similar to ferredoxin reductase isof... 529 e-150
Alignment gi|XP_849721.1| PREDICTED: similar to ferredoxin reductase isof... 522 e-148
>ref|XP_533117.2| PREDICTED: similar to ferredoxin reductase isoform 1 precursor
isoform 1 [Canis familiaris].
Length = 492
Score = 529 bits (1363), Expect = e-150
Identities = 260/304 (85%), Positives = 267/304 (87%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MA RCWRWW WSAW R RPPP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSAWRRARPPPAGSTPSFRQQFSTQEQPPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
H RA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS RCAFHGNVVVGRDV V
Sbjct: 61 HPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSGRCAFHGNVVVGRDVAV 120
Query: 443 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 622
PELQ AYHAVVLSYGAEDH+ALEIPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDTA
Sbjct: 121 PELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTA 180
Query: 623 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 802
VILGQGNVALDVARILLTPPE+LEKTDITEAALG LRQSRVKTVWIVGRRGPLQVAFTIK
Sbjct: 181 VILGQGNVALDVARILLTPPEYLEKTDITEAALGVLRQSRVKTVWIVGRRGPLQVAFTIK 240
Query: 803 ELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEVARRESA 982
ELREMIQLPGTRPILDP DFLG QDRIKEVPRP+K L ELL ATE PG +E AR+ SA
Sbjct: 241 ELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPRKRLTELLLRTATERPGAEEAARQASA 300
Query: 983 SRAW 994
SR W
Sbjct: 301 SRTW 304
>ref|XP_849721.1| PREDICTED: similar to ferredoxin reductase isoform 2 precursor
isoform 2 [Canis familiaris].
Length = 499
Score = 522 bits (1345), Expect = e-148
Identities = 260/311 (83%), Positives = 267/311 (85%), Gaps = 7/311 (2%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MA RCWRWW WSAW R RPPP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MAPRCWRWWPWSAWRRARPPPAGSTPSFRQQFSTQEQPPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
H RA VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS RCAFHGNVVVGRDV V
Sbjct: 61 HPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSGRCAFHGNVVVGRDVAV 120
Query: 443 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 622
PELQ AYHAVVLSYGAEDH+ALEIPGEELPGVFSARAFVGWYNGLPEN+ELAPDLSCDTA
Sbjct: 121 PELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTA 180
Query: 623 VILGQGNVALDVARILLTPPEHLE-------KTDITEAALGALRQSRVKTVWIVGRRGPL 781
VILGQGNVALDVARILLTPPE+LE KTDITEAALG LRQSRVKTVWIVGRRGPL
Sbjct: 181 VILGQGNVALDVARILLTPPEYLEQALLLCQKTDITEAALGVLRQSRVKTVWIVGRRGPL 240
Query: 782 QVAFTIKELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKE 961
QVAFTIKELREMIQLPGTRPILDP DFLG QDRIKEVPRP+K L ELL ATE PG +E
Sbjct: 241 QVAFTIKELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPRKRLTELLLRTATERPGAEE 300
Query: 962 VARRESASRAW 994
AR+ SASR W
Sbjct: 301 AARQASASRTW 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,517,084
Number of extensions: 1501917
Number of successful extensions: 6737
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6710
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012778
(996 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131271.1| PREDICTED: NADPH:adrenodoxin oxidoreductase,... 567 e-162
Alignment gi|XP_003131272.1| PREDICTED: NADPH:adrenodoxin oxidoreductase,... 560 e-160
>ref|XP_003131271.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like
isoform 1 [Sus scrofa].
Length = 492
Score = 567 bits (1461), Expect = e-162
Identities = 278/304 (91%), Positives = 280/304 (92%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MALRCWRWWHWSAWPRTRPPPSG PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MALRCWRWWHWSAWPRTRPPPSGSTQSFRQQFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV
Sbjct: 61 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 120
Query: 443 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 622
PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA
Sbjct: 121 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 180
Query: 623 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 802
VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK
Sbjct: 181 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 240
Query: 803 ELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEVARRESA 982
ELREMIQLPGTRPILDPADFLG QDRIKEVPRP+K LMELL ATE PG +E ARR SA
Sbjct: 241 ELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGAEEAARRASA 300
Query: 983 SRAW 994
SRAW
Sbjct: 301 SRAW 304
>ref|XP_003131272.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like
isoform 2 [Sus scrofa].
Length = 498
Score = 560 bits (1444), Expect = e-160
Identities = 278/310 (89%), Positives = 280/310 (90%), Gaps = 6/310 (1%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MALRCWRWWHWSAWPRTRPPPSG PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MALRCWRWWHWSAWPRTRPPPSGSTQSFRQQFSTQEQTPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV
Sbjct: 61 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 120
Query: 443 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 622
PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA
Sbjct: 121 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 180
Query: 623 VILGQGNVALDVARILLTPPEHLE------KTDITEAALGALRQSRVKTVWIVGRRGPLQ 784
VILGQGNVALDVARILLTPPEHLE KTDITEAALGALRQSRVKTVWIVGRRGPLQ
Sbjct: 181 VILGQGNVALDVARILLTPPEHLEVLLLCQKTDITEAALGALRQSRVKTVWIVGRRGPLQ 240
Query: 785 VAFTIKELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEV 964
VAFTIKELREMIQLPGTRPILDPADFLG QDRIKEVPRP+K LMELL ATE PG +E
Sbjct: 241 VAFTIKELREMIQLPGTRPILDPADFLGLQDRIKEVPRPRKRLMELLLRTATEKPGAEEA 300
Query: 965 ARRESASRAW 994
ARR SASRAW
Sbjct: 301 ARRASASRAW 310
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,927,967
Number of extensions: 943416
Number of successful extensions: 4201
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4181
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012778
(996 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032023.1| NADPH:adrenodoxin oxidoreductase, mitochondrial... 510 e-145
>ref|NP_032023.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor [Mus
musculus].
Length = 494
Score = 510 bits (1313), Expect = e-145
Identities = 254/306 (83%), Positives = 264/306 (86%), Gaps = 2/306 (0%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXX--PQICVVGSGPAGFYTAQHLL 256
MA RCW WW WSAW RP PS PQICVVGSGPAGFYTAQHLL
Sbjct: 1 MAPRCWHWWRWSAWSGLRPSPSRSTPTPGFCQKFSTQEKTPQICVVGSGPAGFYTAQHLL 60
Query: 257 KHHSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDV 436
KHH+ A VDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAF GNVVVGRDV
Sbjct: 61 KHHTHAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFQGNVVVGRDV 120
Query: 437 TVPELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCD 616
+VPEL+EAYHAVVLSYGAEDH+ L IPGEELPGV SARAFVGWYNGLPENQELAPDLSCD
Sbjct: 121 SVPELREAYHAVVLSYGAEDHQPLGIPGEELPGVVSARAFVGWYNGLPENQELAPDLSCD 180
Query: 617 TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT 796
TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT
Sbjct: 181 TAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT 240
Query: 797 IKELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEVARRE 976
IKELREMIQLPGTRPILDP+DFLG QDRIK+VPRP++ L ELL ATE PG +E AR+
Sbjct: 241 IKELREMIQLPGTRPILDPSDFLGLQDRIKDVPRPRRRLTELLLRTATEKPGVEEAARQA 300
Query: 977 SASRAW 994
ASRAW
Sbjct: 301 LASRAW 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,971,083
Number of extensions: 1176941
Number of successful extensions: 4965
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4913
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012778
(996 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077728.2| NADPH:adrenodoxin oxidoreductase, mitochondrial... 511 e-145
Alignment gi|NP_004101.2| NADPH:adrenodoxin oxidoreductase, mitochondrial... 505 e-143
>ref|NP_077728.2| NADPH:adrenodoxin oxidoreductase, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 491
Score = 511 bits (1317), Expect = e-145
Identities = 254/304 (83%), Positives = 263/304 (86%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MA RCWRWW WSAWPRTR PP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
+A VDIYEKQ VPFGLVRFGVAPDHPEVKNVINTFTQTA S RCAF GNV VGRDVTV
Sbjct: 61 -PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTV 119
Query: 443 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 622
PEL+EAYHAVVLSYGAEDHRALEIPGEELPGV SARAFVGWYNGLPENQEL PDLSCDTA
Sbjct: 120 PELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTA 179
Query: 623 VILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIK 802
VILGQGNVALDVARILLTPPEHLE+TDIT+AALG LRQSRVKTVW+VGRRGPLQVAFTIK
Sbjct: 180 VILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQSRVKTVWLVGRRGPLQVAFTIK 239
Query: 803 ELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEVARRESA 982
ELREMIQLPG RPILDP DFLG QD+IKEVPRP+K L ELL ATE PGP E AR+ SA
Sbjct: 240 ELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEAARQASA 299
Query: 983 SRAW 994
SRAW
Sbjct: 300 SRAW 303
>ref|NP_004101.2| NADPH:adrenodoxin oxidoreductase, mitochondrial isoform 2 precursor
[Homo sapiens].
Length = 497
Score = 505 bits (1300), Expect = e-143
Identities = 254/310 (81%), Positives = 263/310 (84%), Gaps = 6/310 (1%)
Frame = +2
Query: 83 MALRCWRWWHWSAWPRTRPPPSGXXXXXXXXXXXXXXXPQICVVGSGPAGFYTAQHLLKH 262
MA RCWRWW WSAWPRTR PP+G PQICVVGSGPAGFYTAQHLLKH
Sbjct: 1 MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLKH 60
Query: 263 HSRARVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFHGNVVVGRDVTV 442
+A VDIYEKQ VPFGLVRFGVAPDHPEVKNVINTFTQTA S RCAF GNV VGRDVTV
Sbjct: 61 -PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQTAHSGRCAFWGNVEVGRDVTV 119
Query: 443 PELQEAYHAVVLSYGAEDHRALEIPGEELPGVFSARAFVGWYNGLPENQELAPDLSCDTA 622
PEL+EAYHAVVLSYGAEDHRALEIPGEELPGV SARAFVGWYNGLPENQEL PDLSCDTA
Sbjct: 120 PELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVGWYNGLPENQELEPDLSCDTA 179
Query: 623 VILGQGNVALDVARILLTPPEHLE------KTDITEAALGALRQSRVKTVWIVGRRGPLQ 784
VILGQGNVALDVARILLTPPEHLE +TDIT+AALG LRQSRVKTVW+VGRRGPLQ
Sbjct: 180 VILGQGNVALDVARILLTPPEHLEALLLCQRTDITKAALGVLRQSRVKTVWLVGRRGPLQ 239
Query: 785 VAFTIKELREMIQLPGTRPILDPADFLGPQDRIKEVPRPKKALMELLRSKATENPGPKEV 964
VAFTIKELREMIQLPG RPILDP DFLG QD+IKEVPRP+K L ELL ATE PGP E
Sbjct: 240 VAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLTELLLRTATEKPGPAEA 299
Query: 965 ARRESASRAW 994
AR+ SASRAW
Sbjct: 300 ARQASASRAW 309
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,362,884
Number of extensions: 1443463
Number of successful extensions: 6545
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6510
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012778
(996 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 313 1e-82
>Sscrofa_Chr12
|| Length = 63588571
Score = 313 bits (158), Expect = 1e-82
Identities = 161/162 (99%)
Strand = Plus / Plus
Query: 1 gggcgagggaggggccgcaacctgcgcggggcgcagggcggtcagagcgatcggatctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362721 gggcgagggaggggccgcaacctgcgcggggcgcagggcggtcagagcgatcggatctgc 6362780
Query: 61 aagctggttactcttctcaggaatggctctgcgctgctggcgctggtggcactggtcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362781 aagctggttactcttctcaggaatggctctgcgctgctggcgctggtggcactggtcggc 6362840
Query: 121 gtggcctcggacccggccgcctccttccgggagcacacagag 162
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6362841 gtggcctcggacccggccgcctccttccgggagcacccagag 6362882
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 354 agaatgtcatcaacacctttacccagacggcccgctctgaccgctgtgccttccatggca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369260 agaatgtcatcaacacctttacccagacggcccgctctgaccgctgtgccttccatggca 6369319
Query: 414 atgtggtagtgggcagggatgtgaccgtgccggagctgcaggaggcctaccacgccgtgg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369320 atgtggtagtgggcagggatgtgaccgtgccggagctgcaggaggcctaccacgccgtgg 6369379
Query: 474 tgctg 478
|||||
Sbjct: 6369380 tgctg 6369384
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 478 gagctatggggcggaggaccatcgggccctggaaatccctggggaggagctgcctggcgt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6369565 gagctatggggcggaggaccatcgggccctggaaatccctggggaggagctgcccggcgt 6369624
Query: 538 gttctcagcccgggcatttgtgggctggtacaatgggcttcctgagaaccaggag 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369625 gttctcagcccgggcatttgtgggctggtacaatgggcttcctgagaaccaggag 6369679
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 693 agaaaacggacatcacagaggctgccctgggggcgctgagacagagtcgggtgaagacgg 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370738 agaaaacggacatcacagaggctgccctgggggcgctgagacagagtcgggtgaagacgg 6370797
Query: 753 tgtggatagtaggccgccgtggacccctgcaagtggccttcaccattaagg 803
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370798 tgtggatagtaggccgccgtggacccctgcaagtggccttcaccattaagg 6370848
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 591 agctggcgccggacctgagctgtgacacagctgtgattctggggcaggggaacgtggctc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369908 agctggcgccggacctgagctgtgacacagctgtgattctggggcaggggaacgtggctc 6369967
Query: 651 tggacgtggcccggatcctgctgacccctcctgagcacctggag 694
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369968 tggacgtggcccggatcctgctgacccctcctgagcacctggag 6370011
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 162 gcttccgccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6363663 gcttccgccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtg 6363722
Query: 222 gcccagctggcttttacacggcccaacacctgctaaag 259
||||||||||||||||||||||||||||||||||||||
Sbjct: 6363723 gcccagctggcttttacacggcccaacacctgctaaag 6363760
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 258 agcaccactcccgggcccgtgtggacatctatgagaagcagctcgtgcccttcggcctgg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6368719 agcaccactcccgggcccgtgtggacatctatgagaagcagctcgtgcccttcggcctgg 6368778
Query: 318 tgcgctttggcgtggcgcccgaccatcctgaggtcaag 355
||||||||||||||||||||||||||||||||||||||
Sbjct: 6368779 tgcgctttggcgtggcgcccgaccatcctgaggtcaag 6368816
Score = 161 bits (81), Expect = 9e-37
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 799 taaggagcttcgggagatgattcagttaccaggaactcggcccattttggatcctgcgga 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371100 taaggagcttcgggagatgattcagttaccaggaactcggcccattttggatcctgcgga 6371159
Query: 859 tttcttgggccctcaggacagaatcaagg 887
||||||||||| ||||||||||||||||
Sbjct: 6371160 tttcttgggcctccaggacagaatcaagg 6371188
Score = 103 bits (52), Expect = 2e-19
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 168 gccagcagttctccacacaggagcagaccccccagatctgtgtggtgggcagtggcccag 227
||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 6380101 gccagcaattttccacacaggagcagacccgccagatctgtgtggtggtcagtgccccat 6380042
Query: 228 ctggcttttacacggcccaacacctgctaaag 259
|||| ||||||||||| | ||||| |||||||
Sbjct: 6380041 ctggattttacacggcgctacaccggctaaag 6380010
Score = 91.7 bits (46), Expect = 7e-16
Identities = 94/110 (85%)
Strand = Plus / Plus
Query: 887 gaggtccctcgaccgaagaaagcgctgatggaacttctgcgctcgaaagccacggaaaac 946
|||||||||||||||| ||| ||||||||||||||||| || ||||||||| ||
Sbjct: 6371317 gaggtccctcgaccgaggaagcggctgatggaacttctgcttcggacagccacggagaag 6371376
Query: 947 ccagggccaaaggaagttgcccgccgggaatcggcctcccgcgcctgggg 996
|||||| || |||| | ||||||||||| |||||||||||||||||||||
Sbjct: 6371377 ccaggggcagaggaggctgcccgccgggcatcggcctcccgcgcctgggg 6371426
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,505,472
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 10
Length of query: 996
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 975
Effective length of database: 2,808,413,156
Effective search space: 2738202827100
Effective search space used: 2738202827100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)