Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012781
(1158 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179150.1| signal recognition particle 72 kDa protein [... 568 e-169
Alignment gi|XP_002688311.1| PREDICTED: signal recognition particle 72kDa... 568 e-169
>ref|NP_001179150.1| signal recognition particle 72 kDa protein [Bos taurus].
Length = 671
Score = 568 bits (1465), Expect(2) = e-169
Identities = 286/292 (97%), Positives = 290/292 (99%)
Frame = +1
Query: 166 VSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNGSFKEALNVI 345
VSVPALWSEVNRYGQNGDFTRALKTVNKILQI+KDDVTALHCKVVCLIQNGSFKEALNVI
Sbjct: 9 VSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVI 68
Query: 346 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 525
NTHTKV ANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC
Sbjct: 69 NTHTKVFANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 128
Query: 526 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 705
LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG
Sbjct: 129 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 188
Query: 706 QGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQGRTEEALQL 885
QGQL+QAM+ILQKAEDLCRRSFSEDSDG EEDPQAELAIIHGQMAYILQLQGRTEEALQL
Sbjct: 189 QGQLSQAMRILQKAEDLCRRSFSEDSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQL 248
Query: 886 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSR 1041
YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS+
Sbjct: 249 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK 300
Score = 47.8 bits (112), Expect(2) = e-169
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 1067 KALLAMYTNQAEQCRKISTSLQSRS 1141
KALLAMYTNQAEQCRKIS SLQS+S
Sbjct: 310 KALLAMYTNQAEQCRKISASLQSQS 334
>ref|XP_002688311.1| PREDICTED: signal recognition particle 72kDa-like [Bos taurus].
Length = 671
Score = 568 bits (1465), Expect(2) = e-169
Identities = 286/292 (97%), Positives = 290/292 (99%)
Frame = +1
Query: 166 VSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNGSFKEALNVI 345
VSVPALWSEVNRYGQNGDFTRALKTVNKILQI+KDDVTALHCKVVCLIQNGSFKEALNVI
Sbjct: 9 VSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVI 68
Query: 346 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 525
NTHTKV ANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC
Sbjct: 69 NTHTKVFANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 128
Query: 526 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 705
LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG
Sbjct: 129 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 188
Query: 706 QGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQGRTEEALQL 885
QGQL+QAM+ILQKAEDLCRRSFSEDSDG EEDPQAELAIIHGQMAYILQLQGRTEEALQL
Sbjct: 189 QGQLSQAMRILQKAEDLCRRSFSEDSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQL 248
Query: 886 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSR 1041
YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS+
Sbjct: 249 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK 300
Score = 47.8 bits (112), Expect(2) = e-169
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 1067 KALLAMYTNQAEQCRKISTSLQSRS 1141
KALLAMYTNQAEQCRKIS SLQS+S
Sbjct: 310 KALLAMYTNQAEQCRKISASLQSQS 334
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,106,390
Number of extensions: 1024555
Number of successful extensions: 3597
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3582
Number of HSP's successfully gapped: 4
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012781
(1158 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003264.1| signal recognition particle 72 kDa protein [... 567 e-162
>ref|NP_001003264.1| signal recognition particle 72 kDa protein [Canis lupus familiaris].
Length = 671
Score = 567 bits (1462), Expect = e-162
Identities = 291/332 (87%), Positives = 300/332 (90%), Gaps = 1/332 (0%)
Frame = +1
Query: 166 VSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNGSFKEALNVI 345
VSVPALWSEVNRYGQNGDFTRALKTVNKILQI+KDDVTALHCKVVCLIQNGSFKEALNVI
Sbjct: 9 VSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVI 68
Query: 346 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 525
NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC
Sbjct: 69 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 128
Query: 526 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 705
LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYN ACALIG
Sbjct: 129 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNAACALIG 188
Query: 706 QGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQGRTEEALQL 885
QGQL+QAMKILQKAEDLCRRS SEDSDG EEDPQAELAIIHGQMAYILQLQGRTEEALQL
Sbjct: 189 QGQLSQAMKILQKAEDLCRRSLSEDSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQL 248
Query: 886 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSRNSCKL*NL 1065
YNQIIKLKPTDV LLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS+ +
Sbjct: 249 YNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEF 308
Query: 1066 QSSTCYVH-KPGRTMQKNIYQFTVQKSQHLLP 1158
+ ++ +K Q +HLLP
Sbjct: 309 NKALLAMYTNQAEQCRKISASLQSQSPEHLLP 340
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,757,075
Number of extensions: 1049254
Number of successful extensions: 3692
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3675
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012781
(1158 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129070.1| PREDICTED: LOW QUALITY PROTEIN: signal recog... 583 e-167
>ref|XP_003129070.1| PREDICTED: LOW QUALITY PROTEIN: signal recognition particle 72 kDa
protein-like [Sus scrofa].
Length = 672
Score = 583 bits (1503), Expect = e-167
Identities = 301/341 (88%), Positives = 307/341 (90%), Gaps = 1/341 (0%)
Frame = +1
Query: 139 MASXXXXXXVSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNG 318
MAS VSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNG
Sbjct: 1 MASGGGGGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNG 60
Query: 319 SFKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVL 498
SFKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVL
Sbjct: 61 SFKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVL 120
Query: 499 YRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELC 678
YRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELC
Sbjct: 121 YRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELC 180
Query: 679 YNTACALIGQGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQ 858
YNTACALIGQGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQ
Sbjct: 181 YNTACALIGQGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQ 240
Query: 859 GRTEEALQLYNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS 1038
GRTEEALQLYNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS
Sbjct: 241 GRTEEALQLYNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS 300
Query: 1039 RNSCKL*NLQSSTCYVH-KPGRTMQKNIYQFTVQKSQHLLP 1158
+ + + ++ +K Q QHLLP
Sbjct: 301 KKQLQAIEFNKALLAMYTNQAEQCRKISTSLQSQSPQHLLP 341
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,738,726
Number of extensions: 654412
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2314
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012781
(1158 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079967.1| signal recognition particle 72 [Mus musculus]. 565 e-168
>ref|NP_079967.1| signal recognition particle 72 [Mus musculus].
Length = 671
Score = 565 bits (1456), Expect(2) = e-168
Identities = 285/292 (97%), Positives = 288/292 (98%)
Frame = +1
Query: 166 VSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNGSFKEALNVI 345
VSVPALWSEVNRYGQN DFTRALKTVNKILQI+KDDVTALHCKVVCLIQNGSFKEALNVI
Sbjct: 9 VSVPALWSEVNRYGQNSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVI 68
Query: 346 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 525
NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESA QQTDKLKELYGQVLYRLERYDEC
Sbjct: 69 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESATQQTDKLKELYGQVLYRLERYDEC 128
Query: 526 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 705
LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYN ACALIG
Sbjct: 129 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNAACALIG 188
Query: 706 QGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQGRTEEALQL 885
QGQL QAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYI+QLQGRTEEALQL
Sbjct: 189 QGQLTQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYIMQLQGRTEEALQL 248
Query: 886 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSR 1041
YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS+
Sbjct: 249 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK 300
Score = 46.6 bits (109), Expect(2) = e-168
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +2
Query: 1067 KALLAMYTNQAEQCRKISTSLQSRS 1141
KALLAMYTNQAEQCRKI+ SLQS+S
Sbjct: 310 KALLAMYTNQAEQCRKIAASLQSQS 334
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,158,917
Number of extensions: 885355
Number of successful extensions: 2869
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2865
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012781
(1158 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008878.3| signal recognition particle 72 kDa protein [Hom... 570 e-163
>ref|NP_008878.3| signal recognition particle 72 kDa protein [Homo sapiens].
Length = 671
Score = 570 bits (1469), Expect = e-163
Identities = 292/332 (87%), Positives = 301/332 (90%), Gaps = 1/332 (0%)
Frame = +1
Query: 166 VSVPALWSEVNRYGQNGDFTRALKTVNKILQIHKDDVTALHCKVVCLIQNGSFKEALNVI 345
VSVPALWSEVNRYGQNGDFTRALKTVNKILQI+KDDVTALHCKVVCLIQNGSFKEALNVI
Sbjct: 9 VSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVI 68
Query: 346 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 525
NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC
Sbjct: 69 NTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDEC 128
Query: 526 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 705
LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG
Sbjct: 129 LAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNTACALIG 188
Query: 706 QGQLNQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYILQLQGRTEEALQL 885
QGQLNQAMKILQKAEDLCRRS SED+DG EEDPQAELAIIHGQMAYILQLQGRTEEALQL
Sbjct: 189 QGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQL 248
Query: 886 YNQIIKLKPTDVALLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSRNSCKL*NL 1065
YNQIIKLKPTDV LLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLS+ +
Sbjct: 249 YNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEF 308
Query: 1066 QSSTCYVH-KPGRTMQKNIYQFTVQKSQHLLP 1158
+ ++ +K Q +HLLP
Sbjct: 309 NKALLAMYTNQAEQCRKISASLQSQSPEHLLP 340
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,185,816
Number of extensions: 1040553
Number of successful extensions: 3573
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3563
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012781
(1158 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 454 e-125
>Sscrofa_Chr08
|| Length = 148491826
Score = 454 bits (229), Expect = e-125
Identities = 243/250 (97%)
Strand = Plus / Minus
Query: 1 cgccggcggagccgacaccgcctcacggttctgggtgcctccgacccccgagccccgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57820989 cgccggcggagccgacaccgcctcacggttctgggtgcctccgacccccgagccccgcgc 57820930
Query: 61 tccgtggccccggcttccgcttcgcgcggaccctccgcatcctcttccgggtcagaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57820929 tccgtggccccggcttccgcttcgcgcggaccctccgcatcctcttccgggtcagaggtc 57820870
Query: 121 gcccgcgtccccgccaagatggcgagcggtggcggcggtnnnnnnntgtcggtgcctgca 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 57820869 gcccgcgtccccgccaagatggcgagcggtggcggcggtgggggggtgtcggtgcctgca 57820810
Query: 181 ctctggagcgaagtgaaccgttacggccagaacggcgactttacgcgcgctctcaaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57820809 ctctggagcgaagtgaaccgttacggccagaacggcgactttacgcgcgctctcaaaacc 57820750
Query: 241 gtcaataaga 250
||||||||||
Sbjct: 57820749 gtcaataaga 57820740
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 495 gttataccggttagaacgctatgatgaatgtctggctgtgtatagagatcttgtccgaaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57814669 gttataccggttagaacgctatgatgaatgtctggctgtgtatagagatcttgtccgaaa 57814610
Query: 555 ctcccaggatgattatgatgaggagagaaaaacaaatctttcagcagttgttgcagctca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57814609 ctcccaggatgattatgatgaggagagaaaaacaaatctttcagcagttgttgcagctca 57814550
Query: 615 aagcaactgggaaaaagtggttccag 640
||||||||||||||||||||||||||
Sbjct: 57814549 aagcaactgggaaaaagtggttccag 57814524
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 784 gatggtgctgaggaggacccacaagcagaactagccatcattcatgggcagatggcctat 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57810406 gatggtgctgaggaggacccacaagcagaactagccatcattcatgggcagatggcctat 57810347
Query: 844 atcctgcagcttcagggtcgtacagaggaggcactgcagctttacaatcagataatcaaa 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57810346 atcctgcagcttcagggtcgtacagaggaggcactgcagctttacaatcagataatcaaa 57810287
Query: 904 ctaaa 908
|||||
Sbjct: 57810286 ctaaa 57810282
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 372 taactctctttcctttgagaaggcctactgtgagtacaggctgaacagaattgagaatgc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57816363 taactctctttcctttgagaaggcctactgtgagtacaggctgaacagaattgagaatgc 57816304
Query: 432 cttgaagacaatagaaagtgccaaccagcaaacagacaaactaaaggagctttatggaca 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57816303 cttgaagacaatagaaagtgccaaccagcaaacagacaaactaaaggagctttatggaca 57816244
Query: 492 agtg 495
||||
Sbjct: 57816243 agtg 57816240
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 251 tactgcagatccacaaggatgatgtcactgccctacactgtaaagtggtgtgccttatcc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57818958 tactgcagatccacaaggatgatgtcactgccctacactgtaaagtggtgtgccttatcc 57818899
Query: 311 agaatgggagtttcaaggaagccttgaatgtcatcaatactcacaccaaagtattagcca 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57818898 agaatgggagtttcaaggaagccttgaatgtcatcaatactcacaccaaagtattagcca 57818839
Query: 371 a 371
|
Sbjct: 57818838 a 57818838
Score = 236 bits (119), Expect = 2e-59
Identities = 133/135 (98%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 965 aggaccaaaatgtctttgactccaagaagaaggtgaaattaaccaatgcagaaggagtag 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57808177 aggaccaaaatgtctttgactccaagaagaaggtgaaattaaccaatgcagaaggagtag 57808118
Query: 1025 agtttaagctttcc-agaaacagctgcaagctatagaattt-acaaagctctacttgcta 1082
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 57808117 agtttaagctttccaagaaacagctgcaagctatagaatttaacaaagctctacttgcta 57808058
Query: 1083 tgtacacaaaccagg 1097
|||||||||||||||
Sbjct: 57808057 tgtacacaaaccagg 57808043
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 640 gagaacttgggtctccaagaaggcacacacgaactgtgctacaacactgcatgtgcactg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57814445 gagaacttgggtctccaagaaggcacacacgaactgtgctacaacactgcatgtgcactg 57814386
Query: 700 ataggacaaggccagctcaaccaggcaatgaaaatcctgcaaaaggctgaag 751
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57814385 ataggacaaggccagctcaaccaggcaatgaaaatcctgcaaaaggctgaag 57814334
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 909 accaacggatgtggcattgctagctgtgattgcaaataacatcattaccattaataagg 967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57810188 accaacggatgtggcattgctagctgtgattgcaaataacatcattaccattaataagg 57810130
Score = 89.7 bits (45), Expect = 3e-15
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 1095 aggcagaacaatgcagaaaaatatctaccagtttacagt-ccagaagtctcagcatcttc 1153
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 57807221 aggcagaacaatgcagaaaaatatctaccagtttacagtcccagagtcctcagcatcttc 57807162
Query: 1154 ttcct 1158
|||||
Sbjct: 57807161 ttcct 57807157
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 750 agatctttgccgccgttcattttcagaagactctg 784
|||||||||||||||||||||||||||||||||||
Sbjct: 57811965 agatctttgccgccgttcattttcagaagactctg 57811931
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,882,861
Number of extensions: 225
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 10
Length of query: 1158
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1137
Effective length of database: 2,808,413,156
Effective search space: 3193165758372
Effective search space used: 3193165758372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)