Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012783
(2173 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094563.1| BTB/POZ domain-containing protein KCTD20 [Bo... 816 0.0
Alignment gi|NP_001068698.1| BTB/POZ domain-containing protein 10 [Bos ta... 488 e-137
>ref|NP_001094563.1| BTB/POZ domain-containing protein KCTD20 [Bos taurus].
Length = 419
Score = 816 bits (2107), Expect = 0.0
Identities = 395/419 (94%), Positives = 401/419 (95%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 313
M+ R TESDR L+QEASCLMDEASA A EKEAN ASSGLQ L YPLGPRNDDL LD A
Sbjct: 1 MSVRRGTESDRLLQQEASCLMDEASAAAQEKEANSPASSGLQNLTYPLGPRNDDLPLDSA 60
Query: 314 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 493
SQPANL FPHMM LPED+KGSCF SGNKR+H+PFIAPERFGNS VGFG N+HSQAPEKVT
Sbjct: 61 SQPANLPFPHMMSLPEDVKGSCFPSGNKRSHEPFIAPERFGNSAVGFGCNVHSQAPEKVT 120
Query: 494 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 673
LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180
Query: 674 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 853
YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
Query: 854 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 1033
ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300
Query: 1034 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 1213
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG
Sbjct: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360
Query: 1214 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD 1390
KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQM SNDFQD
Sbjct: 361 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQD 419
>ref|NP_001068698.1| BTB/POZ domain-containing protein 10 [Bos taurus].
Length = 483
Score = 488 bits (1255), Expect = e-137
Identities = 254/423 (60%), Positives = 312/423 (73%), Gaps = 2/423 (0%)
Frame = +2
Query: 86 SAAGSVSRQLRIHSPRMNAHRSTES--DRSLRQEASCLMDEASAVAPEKEANILASSGLQ 259
S G+ R R ++ RS +S +R+ Q C+ + S P ++ +I
Sbjct: 58 SLHGASGGHERSRDRRRSSDRSRDSSHERTESQLTPCIRNVTS---PTRQHHIEREKD-H 113
Query: 260 TLAYPLGPRNDDLSLDYASQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGN 439
+ + P PR S D +S A + D SC SG F+ + N
Sbjct: 114 SSSRPSSPRPQKASPDGSSSSAGNSSRNSSQSSSD--SSCKTSGEM----VFV----YEN 163
Query: 440 STVGFGSNIHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKG 619
+ G N+ + E+VTL+VD TRFVV+P IFTA P+TMLGRMFG GRE+NFTRPNEKG
Sbjct: 164 AKEG-ARNVRTS--ERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKG 220
Query: 620 EYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSAL 799
EYE+AEGI +TVFR +LDYYKTGII CPDGISIP+LR+ CDYLCI+F+++TI+C+DLSAL
Sbjct: 221 EYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSAL 280
Query: 800 LHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEE 979
+HELSNDGA +QF+ YLEE+ILP+MV A+ GERECHIVVLTD+D VDWDE++PP MGEE
Sbjct: 281 MHELSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEE 340
Query: 980 YSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVI 1159
YSQI+YS+KLYRFFKYIENRDVAK+VLKERGLK IR+GIEGYPT KEK+K+RPGGR EVI
Sbjct: 341 YSQIIYSTKLYRFFKYIENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVI 400
Query: 1160 YNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDEL 1339
YNYVQRPFI+MSWEKEEGKSRHVDFQCV+SKS+TNL AA D+ +DQ ++MH PQVDEL
Sbjct: 401 YNYVQRPFIRMSWEKEEGKSRHVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDEL 460
Query: 1340 DRL 1348
D L
Sbjct: 461 DIL 463
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 77,843,151
Number of extensions: 2354227
Number of successful extensions: 6681
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6665
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 614
Effective length of database: 14,041,694
Effective search space: 8621600116
Effective search space used: 8621600116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012783
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012783
(2173 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851862.1| PREDICTED: similar to K+ channel tetramerizatio... 808 0.0
Alignment gi|XP_532123.2| PREDICTED: similar to K+ channel tetramerizatio... 542 e-154
Alignment gi|XP_851878.1| PREDICTED: similar to K+ channel tetramerizatio... 486 e-137
Alignment gi|XP_534064.2| PREDICTED: similar to K+ channel tetramerizatio... 486 e-137
Alignment gi|XP_864564.1| PREDICTED: similar to K+ channel tetramerizatio... 409 e-114
>ref|XP_851862.1| PREDICTED: similar to K+ channel tetramerization protein isoform 2
[Canis familiaris].
Length = 419
Score = 808 bits (2087), Expect = 0.0
Identities = 389/419 (92%), Positives = 401/419 (95%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 313
MN HR +ESDR L QEAS D +A APE+E N LA++ LQ L YP GPR+DDLSLDYA
Sbjct: 1 MNVHRGSESDRGLWQEASGPTDGPTAPAPERETNSLAAAVLQNLTYPPGPRSDDLSLDYA 60
Query: 314 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 493
SQPANLQFPH+MPLPED+KGSCFQ+GNKRNH+PF+APERFGNSTVGFGSN+HSQAPEKVT
Sbjct: 61 SQPANLQFPHIMPLPEDVKGSCFQNGNKRNHEPFMAPERFGNSTVGFGSNVHSQAPEKVT 120
Query: 494 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 673
LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180
Query: 674 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 853
YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
Query: 854 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 1033
ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300
Query: 1034 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 1213
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG
Sbjct: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360
Query: 1214 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD 1390
KSRHVDFQCVRSKSLTNLVAAGEDVLED EILMHHPPQVDELDRLNAPLSQM SNDFQD
Sbjct: 361 KSRHVDFQCVRSKSLTNLVAAGEDVLEDHEILMHHPPQVDELDRLNAPLSQMASNDFQD 419
>ref|XP_532123.2| PREDICTED: similar to K+ channel tetramerization protein isoform 1
[Canis familiaris].
Length = 306
Score = 542 bits (1396), Expect = e-154
Identities = 257/285 (90%), Positives = 269/285 (94%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 313
MN HR +ESDR L QEAS D +A APE+E N LA++ LQ L YP GPR+DDLSLDYA
Sbjct: 1 MNVHRGSESDRGLWQEASGPTDGPTAPAPERETNSLAAAVLQNLTYPPGPRSDDLSLDYA 60
Query: 314 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 493
SQPANLQFPH+MPLPED+KGSCFQ+GNKRNH+PF+APERFGNSTVGFGSN+HSQAPEKVT
Sbjct: 61 SQPANLQFPHIMPLPEDVKGSCFQNGNKRNHEPFMAPERFGNSTVGFGSNVHSQAPEKVT 120
Query: 494 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 673
LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180
Query: 674 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 853
YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
Query: 854 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQ 988
ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQ
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQ 285
>ref|XP_851878.1| PREDICTED: similar to K+ channel tetramerization protein isoform 2
[Canis familiaris].
Length = 483
Score = 486 bits (1252), Expect = e-137
Identities = 252/423 (59%), Positives = 313/423 (73%), Gaps = 2/423 (0%)
Frame = +2
Query: 86 SAAGSVSRQLRIHSPRMNAHRSTES--DRSLRQEASCLMDEASAVAPEKEANILASSGLQ 259
S G+ R R ++ RS +S +R+ Q C+ + S P ++ ++
Sbjct: 58 SLHGASGGHERSRDRRRSSDRSRDSSHERTESQLTPCIRNVTS---PTRQHHVEREKD-H 113
Query: 260 TLAYPLGPRNDDLSLDYASQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGN 439
+ + P PR S + +S A + D GSC SG F+ + N
Sbjct: 114 SSSRPSSPRPQKASPNGSSSSAGNSSRNSSQSSSD--GSCKTSGEM----VFV----YEN 163
Query: 440 STVGFGSNIHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKG 619
+ G N+ + E+VTL+VD TRFVV+P IFTA P+TMLGRMFG GRE+NFTRPNEKG
Sbjct: 164 AKEG-ARNVRTS--ERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKG 220
Query: 620 EYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSAL 799
EYE+AEGI +TVFR +LDYYKTGII CPDGISIP+LR+ CDYLCI+F+++TI+C+DLSAL
Sbjct: 221 EYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSAL 280
Query: 800 LHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEE 979
+HELSNDGA +QF+ YLEE+ILP+MV A+ GERECHIVVLTD+D VDWDE++PP MGEE
Sbjct: 281 MHELSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEE 340
Query: 980 YSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVI 1159
YSQI+YS+KLYRFFKYIENRDVAK+VLKERGLK IR+GIEGYPT KEK+K+RPGGR EVI
Sbjct: 341 YSQIIYSTKLYRFFKYIENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVI 400
Query: 1160 YNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDEL 1339
YNYVQRPFI+MSWEKEEGKSRHVDFQCV+SKS+TNL AA D+ +DQ +++H PQVDEL
Sbjct: 401 YNYVQRPFIRMSWEKEEGKSRHVDFQCVKSKSITNLAAAAADIPQDQLVVLHPTPQVDEL 460
Query: 1340 DRL 1348
D L
Sbjct: 461 DIL 463
>ref|XP_534064.2| PREDICTED: similar to K+ channel tetramerization protein isoform 1
[Canis familiaris].
Length = 475
Score = 486 bits (1252), Expect = e-137
Identities = 252/423 (59%), Positives = 313/423 (73%), Gaps = 2/423 (0%)
Frame = +2
Query: 86 SAAGSVSRQLRIHSPRMNAHRSTES--DRSLRQEASCLMDEASAVAPEKEANILASSGLQ 259
S G+ R R ++ RS +S +R+ Q C+ + S P ++ ++
Sbjct: 50 SLHGASGGHERSRDRRRSSDRSRDSSHERTESQLTPCIRNVTS---PTRQHHVEREKD-H 105
Query: 260 TLAYPLGPRNDDLSLDYASQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGN 439
+ + P PR S + +S A + D GSC SG F+ + N
Sbjct: 106 SSSRPSSPRPQKASPNGSSSSAGNSSRNSSQSSSD--GSCKTSGEM----VFV----YEN 155
Query: 440 STVGFGSNIHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKG 619
+ G N+ + E+VTL+VD TRFVV+P IFTA P+TMLGRMFG GRE+NFTRPNEKG
Sbjct: 156 AKEG-ARNVRTS--ERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKG 212
Query: 620 EYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSAL 799
EYE+AEGI +TVFR +LDYYKTGII CPDGISIP+LR+ CDYLCI+F+++TI+C+DLSAL
Sbjct: 213 EYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSAL 272
Query: 800 LHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEE 979
+HELSNDGA +QF+ YLEE+ILP+MV A+ GERECHIVVLTD+D VDWDE++PP MGEE
Sbjct: 273 MHELSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEE 332
Query: 980 YSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVI 1159
YSQI+YS+KLYRFFKYIENRDVAK+VLKERGLK IR+GIEGYPT KEK+K+RPGGR EVI
Sbjct: 333 YSQIIYSTKLYRFFKYIENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVI 392
Query: 1160 YNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDEL 1339
YNYVQRPFI+MSWEKEEGKSRHVDFQCV+SKS+TNL AA D+ +DQ +++H PQVDEL
Sbjct: 393 YNYVQRPFIRMSWEKEEGKSRHVDFQCVKSKSITNLAAAAADIPQDQLVVLHPTPQVDEL 452
Query: 1340 DRL 1348
D L
Sbjct: 453 DIL 455
>ref|XP_864564.1| PREDICTED: similar to K+ channel tetramerization protein isoform 3
[Canis familiaris].
Length = 253
Score = 409 bits (1050), Expect = e-114
Identities = 197/199 (98%), Positives = 197/199 (98%)
Frame = +2
Query: 794 ALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMG 973
ALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMG
Sbjct: 55 ALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMG 114
Query: 974 EEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSE 1153
EEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSE
Sbjct: 115 EEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSE 174
Query: 1154 VIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVD 1333
VIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLED EILMHHPPQVD
Sbjct: 175 VIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDHEILMHHPPQVD 234
Query: 1334 ELDRLNAPLSQMVSNDFQD 1390
ELDRLNAPLSQM SNDFQD
Sbjct: 235 ELDRLNAPLSQMASNDFQD 253
Score = 67.0 bits (162), Expect = 7e-11
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSL-DY 310
MN HR +ESDR L QEAS D +A APE+E N LA++ LQ L YP GPR+D L +
Sbjct: 1 MNVHRGSESDRGLWQEASGPTDGPTAPAPERETNSLAAAVLQNLTYPPGPRSDGALLHEL 60
Query: 311 ASQPANLQFPHMM-PLPEDIKGSCFQSGNKRNH 406
++ A+ QF H + L I C + G + H
Sbjct: 61 SNDGAHKQFDHYLEELILPIMVGCAKKGERECH 93
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,035,774
Number of extensions: 2195582
Number of successful extensions: 6990
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6956
Number of HSP's successfully gapped: 6
Length of query: 724
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 614
Effective length of database: 15,207,544
Effective search space: 9337432016
Effective search space used: 9337432016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012783
(2173 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929578.1| PREDICTED: BTB/POZ domain-containing protein... 863 0.0
Alignment gi|XP_003123017.2| PREDICTED: BTB/POZ domain-containing protein... 137 3e-32
>ref|XP_001929578.1| PREDICTED: BTB/POZ domain-containing protein KCTD20 [Sus scrofa].
Length = 419
Score = 863 bits (2231), Expect = 0.0
Identities = 419/419 (100%), Positives = 419/419 (100%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 313
MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA
Sbjct: 1 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 60
Query: 314 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 493
SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT
Sbjct: 61 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 120
Query: 494 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 673
LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180
Query: 674 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 853
YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
Query: 854 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 1033
ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300
Query: 1034 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 1213
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG
Sbjct: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360
Query: 1214 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD 1390
KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD
Sbjct: 361 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD 419
>ref|XP_003123017.2| PREDICTED: BTB/POZ domain-containing protein 10 isoform 2 [Sus
scrofa].
Length = 112
Score = 137 bits (344), Expect = 3e-32
Identities = 63/82 (76%), Positives = 72/82 (87%)
Frame = +2
Query: 1103 YPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGE 1282
YPT KEK+K+RPGGR EVIYNYVQRPFI+MSWEKEEGKSRHVDFQCV+SKS+TNL AA
Sbjct: 11 YPTYKEKVKKRPGGRPEVIYNYVQRPFIRMSWEKEEGKSRHVDFQCVKSKSITNLAAAAA 70
Query: 1283 DVLEDQEILMHHPPQVDELDRL 1348
D+ +DQ ++MH PQVDELD L
Sbjct: 71 DIPQDQLVVMHPTPQVDELDIL 92
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,197,062
Number of extensions: 1866452
Number of successful extensions: 4431
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4421
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 618
Effective length of database: 8,704,850
Effective search space: 5379597300
Effective search space used: 5379597300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012783
(2173 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080164.2| BTB/POZ domain-containing protein KCTD20 [Mus m... 776 0.0
Alignment gi|NP_598461.1| BTB/POZ domain-containing protein 10 [Mus muscu... 487 e-137
>ref|NP_080164.2| BTB/POZ domain-containing protein KCTD20 [Mus musculus].
Length = 419
Score = 776 bits (2004), Expect = 0.0
Identities = 373/419 (89%), Positives = 390/419 (93%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 313
MN H+ ++ D SL+ E SCL DEA A EKE + L SSGL ++ YPL R++DL+LDYA
Sbjct: 1 MNVHQGSDGDWSLQPELSCLGDEALAATQEKEGSSLVSSGLHSVTYPLAARSEDLALDYA 60
Query: 314 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 493
SQPA+L PH+MPLPED KGSCFQSG+KR+H+PFI PERFGNS +GFG HSQAPEKVT
Sbjct: 61 SQPASLPHPHIMPLPEDNKGSCFQSGSKRSHEPFIVPERFGNSGLGFGGGAHSQAPEKVT 120
Query: 494 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 673
LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEY IAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYVIAEGISATVFRTVLD 180
Query: 674 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 853
YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
Query: 854 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 1033
ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300
Query: 1034 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 1213
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG
Sbjct: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360
Query: 1214 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD 1390
KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEI+MHHPPQVDELDRLNAPLSQM NDFQD
Sbjct: 361 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEIIMHHPPQVDELDRLNAPLSQMAPNDFQD 419
>ref|NP_598461.1| BTB/POZ domain-containing protein 10 [Mus musculus].
Length = 475
Score = 487 bits (1253), Expect = e-137
Identities = 225/289 (77%), Positives = 263/289 (91%)
Frame = +2
Query: 482 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 661
E+VTL+VD TRFVV+P IFTA P+TMLGRMFG GRE+NFTRPNEKGEYE+AEGI +TVFR
Sbjct: 167 ERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKGEYEVAEGIGSTVFR 226
Query: 662 TVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFD 841
+LDYYKTGII CPDGISIP+LR+ CDYLCI+F+++TI+C+DLSAL+HELSNDGA +QF+
Sbjct: 227 AILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARRQFE 286
Query: 842 HYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFF 1021
YLEE+ILP+MV A+ GERECHIVVLTD+D VDWDE++PP MGEEYSQI+YS+KLYRFF
Sbjct: 287 FYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQIIYSTKLYRFF 346
Query: 1022 KYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWE 1201
KYIENRDVAK+VLKERGLK IR+GIEGYPT KEK+K+RPGGR EVIYNYVQRPFI+MSWE
Sbjct: 347 KYIENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVIYNYVQRPFIRMSWE 406
Query: 1202 KEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRL 1348
KEEGKSRHVDFQCV+SKS+TNL AA D+ +DQ ++MH PQVDELD L
Sbjct: 407 KEEGKSRHVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDIL 455
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,725,325
Number of extensions: 1820064
Number of successful extensions: 5593
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5577
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 615
Effective length of database: 12,343,635
Effective search space: 7591335525
Effective search space used: 7591335525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012783
(2173 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_775833.2| BTB/POZ domain-containing protein KCTD20 [Homo ... 821 0.0
Alignment gi|NP_115696.2| BTB/POZ domain-containing protein 10 [Homo sapi... 487 e-137
>ref|NP_775833.2| BTB/POZ domain-containing protein KCTD20 [Homo sapiens].
Length = 419
Score = 821 bits (2121), Expect = 0.0
Identities = 396/419 (94%), Positives = 405/419 (96%)
Frame = +2
Query: 134 MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYA 313
MN HR ++SDR LRQEASCL+D+ AVA EKEAN LASSG L YPLGPRN+DLSLDYA
Sbjct: 1 MNVHRGSDSDRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYA 60
Query: 314 SQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVT 493
SQPANLQFPH+MPL EDIKGSCFQSGNKRNH+PFIAPERFGNS+VGFGSN HSQAPEKVT
Sbjct: 61 SQPANLQFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAPEKVT 120
Query: 494 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 673
LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD
Sbjct: 121 LLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLD 180
Query: 674 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 853
YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE
Sbjct: 181 YYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLE 240
Query: 854 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 1033
ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Sbjct: 241 ELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE 300
Query: 1034 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 1213
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG
Sbjct: 301 NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEG 360
Query: 1214 KSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD 1390
KSRHVDFQCVRSKSLTNLVAAG+DVLEDQEILMHHPPQVDELDRLNAPLSQM SNDFQD
Sbjct: 361 KSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQD 419
>ref|NP_115696.2| BTB/POZ domain-containing protein 10 [Homo sapiens].
Length = 475
Score = 487 bits (1253), Expect = e-137
Identities = 225/289 (77%), Positives = 263/289 (91%)
Frame = +2
Query: 482 EKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFR 661
E+VTL+VD TRFVV+P IFTA P+TMLGRMFG GRE+NFTRPNEKGEYE+AEGI +TVFR
Sbjct: 167 ERVTLIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKGEYEVAEGIGSTVFR 226
Query: 662 TVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFD 841
+LDYYKTGII CPDGISIP+LR+ CDYLCI+F+++TI+C+DLSAL+HELSNDGA +QF+
Sbjct: 227 AILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARRQFE 286
Query: 842 HYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFF 1021
YLEE+ILP+MV A+ GERECHIVVLTD+D VDWDE++PP MGEEYSQI+YS+KLYRFF
Sbjct: 287 FYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWDEEYPPQMGEEYSQIIYSTKLYRFF 346
Query: 1022 KYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWE 1201
KYIENRDVAK+VLKERGLK IR+GIEGYPT KEK+K+RPGGR EVIYNYVQRPFI+MSWE
Sbjct: 347 KYIENRDVAKSVLKERGLKKIRLGIEGYPTYKEKVKKRPGGRPEVIYNYVQRPFIRMSWE 406
Query: 1202 KEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRL 1348
KEEGKSRHVDFQCV+SKS+TNL AA D+ +DQ ++MH PQVDELD L
Sbjct: 407 KEEGKSRHVDFQCVKSKSITNLAAAAADIPQDQLVVMHPTPQVDELDIL 455
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,552,714
Number of extensions: 2151067
Number of successful extensions: 6670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6645
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 614
Effective length of database: 14,671,124
Effective search space: 9008070136
Effective search space used: 9008070136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012783
(2173 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1582 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1582 bits (798), Expect = 0.0
Identities = 823/833 (98%), Gaps = 1/833 (0%)
Strand = Plus / Plus
Query: 1099 aggttatcctacctgtaaagaaaaaattaagaggagacctggcggccggtctgaagtcat 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37091975 aggttatcctacctgtaaagaaaaaattaagaggagacctggcggccggtctgaagtcat 37092034
Query: 1159 ctataattatgtacagcgcccctttatccagatgtcatgggaaaaggaagaaggaaaaag 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092035 ctataattatgtacagcgcccctttatccagatgtcatgggaaaaggaagaaggaaaaag 37092094
Query: 1219 tcgccatgtggatttccagtgtgttcggagcaaatccctcacgaatctggtagctgctgg 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092095 tcgccatgtggatttccagtgtgttcggagcaaatccctcacgaatctggtagctgctgg 37092154
Query: 1279 agaagatgtcttggaggaccaagagatactaatgcatcacccgccccaagtagatgaact 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092155 agaagatgtcttggaggaccaagagatactaatgcatcacccgccccaagtagatgaact 37092214
Query: 1339 tgaccggctgaacgccccactttctcagatggtttctaacgactttcaggattagagtca 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092215 tgaccggctgaacgccccactttctcagatggtttctaacgactttcaggattagagtca 37092274
Query: 1399 gctgtgcgtccagcctgttgccaggcttctcttggctgggatgcccccagccagtctttc 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092275 gctgtgcgtccagcctgttgccaggcttctcttggctgggatgcccccagccagtctttc 37092334
Query: 1459 ccatggtttgtctcacactgagtaggagacaagcttctcccccatcctgtcctttccttc 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092335 ccatggtttgtctcacactgagtaggagacaagcttctcccccatcctgtcctttccttc 37092394
Query: 1519 cataattaatgtgtgttcttttcagttagtctgtgcctccggcaggggatggaaaagcac 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092395 cataattaatgtgtgttcttttcagttagtctgtgcctccggcaggggatggaaaagcac 37092454
Query: 1579 tcactggtaattaagctaccagctttgcagcagccctggtaacttgaacattttgggtct 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092455 tcactggtaattaagctaccagctttgcagcagccctggtaacttgaacattttgggtct 37092514
Query: 1639 ggtgctgttcactgagtctttgcataactgcaaaagcaggaaaggaagtcaagacttccg 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092515 ggtgctgttcactgagtctttgcataactgcaaaagcaggaaaggaagtcaagacttccg 37092574
Query: 1699 ttgcctcatattcagtcctcatccttttcactgttactgcnnnnnnnnnatttcatacca 1758
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 37092575 ttgcctcatattcagtcctcatccttttcactgttactgctttttttttatttcatacca 37092634
Query: 1759 gggcaaattacttagcagcaaagggaccaaaacttaaaaggagacaatctctattttgta 1818
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 37092635 gggcaaattacttagcagcaaagggacc-aaacttaaaaggagacaatctctattttgta 37092693
Query: 1819 taagcacgcactaatggatgcccattagaggttaatgaagataccattcctggtggcctc 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092694 taagcacgcactaatggatgcccattagaggttaatgaagataccattcctggtggcctc 37092753
Query: 1879 tgtgtggaggttgtgtctggaaagaacttggctctcattcaaaatgtccaaaa 1931
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37092754 tgtgtggaggttgtgtctggaaagaacttggctctcattcaaaatgtccaaaa 37092806
Score = 547 bits (276), Expect = e-153
Identities = 276/276 (100%)
Strand = Plus / Plus
Query: 293 gacctttcacttgactatgcctctcagccagcaaatcttcagttccctcacatgatgccg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37082994 gacctttcacttgactatgcctctcagccagcaaatcttcagttccctcacatgatgccg 37083053
Query: 353 cttcctgaagacatcaaaggctcttgcttccaaagtgggaataaacggaaccacgatccc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37083054 cttcctgaagacatcaaaggctcttgcttccaaagtgggaataaacggaaccacgatccc 37083113
Query: 413 ttcattgctccagagcgatttggaaatagcactgtgggctttggcagtaacattcattcc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37083114 ttcattgctccagagcgatttggaaatagcactgtgggctttggcagtaacattcattcc 37083173
Query: 473 caggcgccagagaaagtgacactgcttgtagatggcacacgttttgttgtgaatccacaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37083174 caggcgccagagaaagtgacactgcttgtagatggcacacgttttgttgtgaatccacaa 37083233
Query: 533 attttcactgctcatccggataccatgttgggaagg 568
||||||||||||||||||||||||||||||||||||
Sbjct: 37083234 attttcactgctcatccggataccatgttgggaagg 37083269
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 792 gtgctttgctgcatgaactgtctaacgatggtgctcacaagcagtttgaccactacctcg 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37088074 gtgctttgctgcatgaactgtctaacgatggtgctcacaagcagtttgaccactacctcg 37088133
Query: 852 aagagctgatcctgcccatcatggtgggctgtgccaagaaaggggagcgggagtgccaca 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37088134 aagagctgatcctgcccatcatggtgggctgtgccaagaaaggggagcgggagtgccaca 37088193
Query: 912 tcgtcgtgctgacggatgaggattctgtggactgggatgaagaccaccccccacccatgg 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37088194 tcgtcgtgctgacggatgaggattctgtggactgggatgaagaccaccccccacccatgg 37088253
Query: 972 gggaggaatattcccaaa 989
||||||||||||||||||
Sbjct: 37088254 gggaggaatattcccaaa 37088271
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 103 cagcagacagctcaggatacacagtccaaggatgaacgctcaccgtagcactgagagcga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37078293 cagcagacagctcaggatacacagtccaaggatgaacgctcaccgtagcactgagagcga 37078352
Query: 163 caggtcattgcggcaggaggccagctgcctcatggatgaagcctcagctgtggccccgga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37078353 caggtcattgcggcaggaggccagctgcctcatggatgaagcctcagctgtggccccgga 37078412
Query: 223 aaaagaagcaaatatcctggcttcttctggtcttcagactcttgcttatcctctaggtcc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37078413 aaaagaagcaaatatcctggcttcttctggtcttcagactcttgcttatcctctaggtcc 37078472
Query: 283 caggaatgatg 293
|||||||||||
Sbjct: 37078473 caggaatgatg 37078483
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 670 ggactactacaaaactggtatcatcaattgtcctgatggaatctcaatcccagaccttag 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37086701 ggactactacaaaactggtatcatcaattgtcctgatggaatctcaatcccagaccttag 37086760
Query: 730 agacacgtgcgattatctctgcattaactttgacttcaacactatccgatgtcaggatct 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37086761 agacacgtgcgattatctctgcattaactttgacttcaacactatccgatgtcaggatct 37086820
Query: 790 gagt 793
||||
Sbjct: 37086821 gagt 37086824
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 990 ttctttatagctctaagctgtacaggtttttcaaatatattgagaatcgggatgttgcta 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37090516 ttctttatagctctaagctgtacaggtttttcaaatatattgagaatcgggatgttgcta 37090575
Query: 1050 aaacagtgttaaaggaacggggcctgaaaaacattcgcattggaattgaaggt 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37090576 aaacagtgttaaaggaacggggcctgaaaaacattcgcattggaattgaaggt 37090628
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 566 aggatgtttggaccaggaagagagtacaacttcacacggcccaatgagaagggtgaatat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37086251 aggatgtttggaccaggaagagagtacaacttcacacggcccaatgagaagggtgaatat 37086310
Query: 626 gagattgcggaaggaatcagtgcaactgtatttcgaacggtgctgg 671
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37086311 gagattgcggaaggaatcagtgcaactgtatttcgaacggtgctgg 37086356
Score = 208 bits (105), Expect = 9e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 gctgcggcactaccggtccccgcggcgactgctcgcggcgccgggtgcgcgcgcctcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37046636 gctgcggcactaccggtccccgcggcgactgctcgcggcgccgggtgcgcgcgcctcccg 37046695
Query: 61 ggtggattcgggccccgagcgcgagagcgcggcagggagcgtcag 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37046696 ggtggattcgggccccgagcgcgagagcgcggcagggagcgtcag 37046740
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,290,379
Number of extensions: 382
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 9
Length of query: 2173
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2151
Effective length of database: 2,808,408,574
Effective search space: 6040886842674
Effective search space used: 6040886842674
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)