Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012788
(1770 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209206.1| NADH dehydrogenase subunit 2 [Bos taurus]. 283 5e-76
Alignment gi|NP_001178341.1| ribosomal protein L21 [Bos taurus]. 98 3e-20
Alignment gi|XP_002699790.1| PREDICTED: ribosomal protein L21-like [Bos t... 98 3e-20
Alignment gi|XP_002691885.1| PREDICTED: ribosomal protein L21 isoform 3 [... 98 3e-20
Alignment gi|XP_002691884.1| PREDICTED: ribosomal protein L21 isoform 2 [... 98 3e-20
Alignment gi|XP_002691883.1| PREDICTED: ribosomal protein L21 isoform 1 [... 98 3e-20
Alignment gi|XP_001250469.1| PREDICTED: ribosomal protein L21-like isofor... 98 3e-20
Alignment gi|XP_002700972.1| PREDICTED: ribosomal protein L21 [Bos taurus]. 98 3e-20
Alignment gi|XP_876960.1| PREDICTED: ribosomal protein L21 isoform 5 [Bos... 98 3e-20
Alignment gi|XP_002696947.1| PREDICTED: ribosomal protein L21-like [Bos t... 96 8e-20
>ref|YP_209206.1| NADH dehydrogenase subunit 2 [Bos taurus].
Length = 347
Score = 283 bits (723), Expect = 5e-76
Identities = 160/346 (46%), Positives = 201/346 (58%)
Frame = +3
Query: 141 INPIIYTTLIITVMSGTXXXXXXXXXXXXXXGFEINLLAIIPVLIKNFNPRATEAATKYF 320
+NPII+ +++T+M GT GFE+N+LAIIP+++KN NPRATEA+TKYF
Sbjct: 1 MNPIIFIIILLTIMLGTIIVMISSHWLLVWIGFEMNMLAIIPIMMKNHNPRATEASTKYF 60
Query: 321 LTQATASXXXXXXXXXXXXYSGQWTITKIFNPVAITIITMALAIKLGLSPFHF*VPEVTQ 500
LTQ+TAS +SGQWT+ K+F+P+A ++TMALA+KLG++PFHF VPEVTQ
Sbjct: 61 LTQSTASMLLMMAVIINVMFSGQWTVMKLFSPMASMLMTMALAMKLGMAPFHFWVPEVTQ 120
Query: 501 GISXXXXXXXXXXXXXXXXSVLCQISQSINPNXXXXXXXXXXXXXXXXXXNQTQLRKIIA 680
GI SVL QI SIN N NQTQLRKI+A
Sbjct: 121 GIPLSSGLILLTWQKLAPMSVLYQIFPSINLNLILTLSVLSILIGGWGGLNQTQLRKIMA 180
Query: 681 YSSIAHIG*MTAVLPYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIPXX 860
YSSIAH+G MTAVLPYN NK P
Sbjct: 181 YSSIAHMGWMTAVLPYNPTMTLLNLIIYIIMTSTMFTMFMANSTTTTLSLSHTWNKTPIM 240
Query: 861 XXXXXXXXXXXXXXXXXXXFMPK*IIIQEITKNESIIMPTLIAITALLNLYFYIRLAYSS 1040
FMPK +IIQE+TKN SII+PT +AITALLNLYFY+RL YS+
Sbjct: 241 TVLILATLLSMGGLPPLSGFMPKWMIIQEMTKNNSIILPTFMAITALLNLYFYMRLTYST 300
Query: 1041 SLTMFPSTNNIKIK*QFEHTKQIKLLPTIIVLSTLVLPITPALSSL 1178
+LTMFPSTNN+K+K QF K++ LPT++VLST++LP+TP LS L
Sbjct: 301 TLTMFPSTNNMKMKWQFPLMKKMTFLPTMVVLSTMMLPLTPMLSVL 346
>ref|NP_001178341.1| ribosomal protein L21 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002699790.1| PREDICTED: ribosomal protein L21-like [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002691885.1| PREDICTED: ribosomal protein L21 isoform 3 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002691884.1| PREDICTED: ribosomal protein L21 isoform 2 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002691883.1| PREDICTED: ribosomal protein L21 isoform 1 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001250469.1| PREDICTED: ribosomal protein L21-like isoform 1 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002700972.1| PREDICTED: ribosomal protein L21 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_876960.1| PREDICTED: ribosomal protein L21 isoform 5 [Bos taurus].
Length = 160
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_002696947.1| PREDICTED: ribosomal protein L21-like [Bos taurus].
Length = 160
Score = 96.3 bits (238), Expect = 8e-20
Identities = 57/93 (61%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V E++ KK+E EKG VQ
Sbjct: 68 TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVEEDDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKHQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,179,189
Number of extensions: 1128273
Number of successful extensions: 3149
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 3132
Number of HSP's successfully gapped: 21
Length of query: 590
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 482
Effective length of database: 14,107,870
Effective search space: 6799993340
Effective search space used: 6799993340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012788
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012788
(1770 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008472.4| NADH dehydrogenase subunit 2 [Canis lupus famil... 273 3e-73
Alignment gi|XP_853954.1| PREDICTED: similar to 60S ribosomal protein L21... 100 8e-21
Alignment gi|XP_860355.1| PREDICTED: similar to 60S ribosomal protein L21... 99 1e-20
Alignment gi|XP_860327.1| PREDICTED: similar to 60S ribosomal protein L21... 99 1e-20
Alignment gi|XP_860292.1| PREDICTED: similar to 60S ribosomal protein L21... 99 1e-20
Alignment gi|XP_860250.1| PREDICTED: similar to 60S ribosomal protein L21... 99 1e-20
Alignment gi|XP_849941.1| PREDICTED: similar to 60S ribosomal protein L21... 99 1e-20
Alignment gi|XP_536024.2| PREDICTED: similar to 60S ribosomal protein L21... 98 2e-20
Alignment gi|XP_859688.1| PREDICTED: similar to ribosomal protein L21 iso... 98 2e-20
Alignment gi|XP_859658.1| PREDICTED: similar to ribosomal protein L21 iso... 98 2e-20
>ref|NP_008472.4| NADH dehydrogenase subunit 2 [Canis lupus familiaris].
Length = 347
Score = 273 bits (699), Expect = 3e-73
Identities = 156/347 (44%), Positives = 196/347 (56%)
Frame = +3
Query: 141 INPIIYTTLIITVMSGTXXXXXXXXXXXXXXGFEINLLAIIPVLIKNFNPRATEAATKYF 320
+ P I ++ T+M+GT GFE+N+LAIIP+L+K +NPRA EA+TKYF
Sbjct: 1 MKPPILIIIMATIMTGTMIVMLSSHWLLIWIGFEMNMLAIIPILMKKYNPRAMEASTKYF 60
Query: 321 LTQATASXXXXXXXXXXXXYSGQWTITKIFNPVAITIITMALAIKLGLSPFHF*VPEVTQ 500
LTQATAS YSGQW I+KI NP+A ++T AL +KLGLSPFHF VPEVTQ
Sbjct: 61 LTQATASMLLMMGVTINLLYSGQWVISKISNPIASIMMTTALTMKLGLSPFHFWVPEVTQ 120
Query: 501 GISXXXXXXXXXXXXXXXXSVLCQISQSINPNXXXXXXXXXXXXXXXXXXNQTQLRKIIA 680
GI+ S+L QIS SIN N NQTQLRKI+A
Sbjct: 121 GITLMSGMILLTWQKIAPMSILYQISPSINTNLLMLMALTSVLVGGWGGLNQTQLRKIMA 180
Query: 681 YSSIAHIG*MTAVLPYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIPXX 860
YSSIAH+G M A++ YN NK P
Sbjct: 181 YSSIAHMGWMAAIITYNPTMMVLNLTLYILMTLSTFMLFMLNSSTTTLSLSHMWNKFPLI 240
Query: 861 XXXXXXXXXXXXXXXXXXXFMPK*IIIQEITKNESIIMPTLIAITALLNLYFYIRLAYSS 1040
F+PK +IIQE+TKN II+PTL+AITALLNLYFY+RL YS+
Sbjct: 241 TSMILILMLSLGGLPPLSGFIPKWMIIQELTKNNMIIIPTLMAITALLNLYFYLRLTYST 300
Query: 1041 SLTMFPSTNNIKIK*QFEHTKQIKLLPTIIVLSTLVLPITPALSSLN 1181
+LTMFPSTNN+K+K QFE+TK+ LLP +I+ ST++LP+TP LS L+
Sbjct: 301 ALTMFPSTNNMKMKWQFEYTKKATLLPPLIITSTMLLPLTPMLSVLD 347
>ref|XP_853954.1| PREDICTED: similar to 60S ribosomal protein L21 [Canis familiaris].
Length = 160
Score = 99.8 bits (247), Expect = 8e-21
Identities = 58/93 (62%), Positives = 65/93 (69%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN+KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNRKEPELLEPIPYEFMA 160
>ref|XP_860355.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 6 [Canis
familiaris].
Length = 160
Score = 99.0 bits (245), Expect = 1e-20
Identities = 58/94 (61%), Positives = 65/94 (69%)
Frame = +2
Query: 1352 ETQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRV 1531
+TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG V
Sbjct: 67 DTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWV 126
Query: 1532 QLKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
QLK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 127 QLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_860327.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 5 [Canis
familiaris].
Length = 160
Score = 99.0 bits (245), Expect = 1e-20
Identities = 58/94 (61%), Positives = 65/94 (69%)
Frame = +2
Query: 1352 ETQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRV 1531
+TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG V
Sbjct: 67 DTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWV 126
Query: 1532 QLKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
QLK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 127 QLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_860292.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 4 [Canis
familiaris].
Length = 160
Score = 99.0 bits (245), Expect = 1e-20
Identities = 58/94 (61%), Positives = 65/94 (69%)
Frame = +2
Query: 1352 ETQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRV 1531
+TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG V
Sbjct: 67 DTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWV 126
Query: 1532 QLKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
QLK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 127 QLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_860250.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 3 [Canis
familiaris].
Length = 160
Score = 99.0 bits (245), Expect = 1e-20
Identities = 58/94 (61%), Positives = 65/94 (69%)
Frame = +2
Query: 1352 ETQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRV 1531
+TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG V
Sbjct: 67 DTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWV 126
Query: 1532 QLKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
QLK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 127 QLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_849941.1| PREDICTED: similar to 60S ribosomal protein L21 isoform 2 [Canis
familiaris].
Length = 160
Score = 99.0 bits (245), Expect = 1e-20
Identities = 58/94 (61%), Positives = 65/94 (69%)
Frame = +2
Query: 1352 ETQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRV 1531
+TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG V
Sbjct: 67 DTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWV 126
Query: 1532 QLKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
QLK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 127 QLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_536024.2| PREDICTED: similar to 60S ribosomal protein L21 [Canis familiaris].
Length = 220
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 128 TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 187
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 188 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 220
>ref|XP_859688.1| PREDICTED: similar to ribosomal protein L21 isoform 7 [Canis
familiaris].
Length = 160
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_859658.1| PREDICTED: similar to ribosomal protein L21 isoform 6 [Canis
familiaris].
Length = 160
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,729,286
Number of extensions: 1033856
Number of successful extensions: 2980
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 2976
Number of HSP's successfully gapped: 43
Length of query: 590
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 482
Effective length of database: 15,274,216
Effective search space: 7362172112
Effective search space used: 7362172112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012788
(1770 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008635.1| NADH dehydrogenase subunit 2 [Sus scrofa]. 356 3e-98
Alignment gi|XP_003361340.1| PREDICTED: 60S ribosomal protein L21-like [S... 81 2e-15
>ref|NP_008635.1| NADH dehydrogenase subunit 2 [Sus scrofa].
Length = 347
Score = 356 bits (913), Expect = 3e-98
Identities = 202/347 (58%), Positives = 225/347 (64%)
Frame = +3
Query: 141 INPIIYTTLIITVMSGTXXXXXXXXXXXXXXGFEINLLAIIPVLIKNFNPRATEAATKYF 320
+NPIIYTTLI+TVMSGT GFE+NLLA+IPVL+KNFNPRATEAATKYF
Sbjct: 1 MNPIIYTTLIMTVMSGTMLVMISSHWLLIWIGFEMNLLAMIPVLMKNFNPRATEAATKYF 60
Query: 321 LTQATASXXXXXXXXXXXXYSGQWTITKIFNPVAITIITMALAIKLGLSPFHF*VPEVTQ 500
LTQATAS YSGQWTITK+FNPVA+T++TMALA+KLGLSPFHF VPEVTQ
Sbjct: 61 LTQATASMMLMMAIIINLLYSGQWTITKMFNPVAMTMMTMALAMKLGLSPFHFWVPEVTQ 120
Query: 501 GISXXXXXXXXXXXXXXXXSVLCQISQSINPNXXXXXXXXXXXXXXXXXXNQTQLRKIIA 680
GIS SVLCQISQSINPN NQTQLRKI+A
Sbjct: 121 GISLQAGLLLLTWQKLAPLSVLCQISQSINPNLMLTMAMLSILIGGWGGLNQTQLRKIMA 180
Query: 681 YSSIAHIG*MTAVLPYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIPXX 860
YSSIAH+G MTAVLPYN NK+P
Sbjct: 181 YSSIAHMGWMTAVLPYNTTMTILNLLIYITMTLAMFMLLIHSSATTTLSLSHTWNKMPVI 240
Query: 861 XXXXXXXXXXXXXXXXXXXFMPK*IIIQEITKNESIIMPTLIAITALLNLYFYIRLAYSS 1040
FMPK +IIQE+TKNESIIMPTL+A+TALLNLYFY+RLAYSS
Sbjct: 241 TSLMMVTLLSMGGLPPLSGFMPKWMIIQEMTKNESIIMPTLMAMTALLNLYFYMRLAYSS 300
Query: 1041 SLTMFPSTNNIKIK*QFEHTKQIKLLPTIIVLSTLVLPITPALSSLN 1181
SLTMFPSTNN+K+K QFEHTKQ+KLLPT+IVLSTLVLP+TPALSSLN
Sbjct: 301 SLTMFPSTNNMKMKWQFEHTKQMKLLPTMIVLSTLVLPMTPALSSLN 347
>ref|XP_003361340.1| PREDICTED: 60S ribosomal protein L21-like [Sus scrofa].
Length = 211
Score = 80.9 bits (198), Expect = 2e-15
Identities = 43/72 (59%), Positives = 50/72 (69%)
Frame = +2
Query: 1418 INERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQLKGKAALPIEAHFVRTNKKEP 1597
+N I+ K SK++D FL V EN KK+E EKG VQLK + P EAHFVRTN KEP
Sbjct: 54 LNVHIKHLKYSKSQDSFLNHVKENSQKKKEAKEKGTWVQLKHQPTPPREAHFVRTNGKEP 113
Query: 1598 ELLEPVPDEFMA 1633
ELLEP+P EFMA
Sbjct: 114 ELLEPIPYEFMA 125
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,423,617
Number of extensions: 936345
Number of successful extensions: 1994
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1988
Number of HSP's successfully gapped: 3
Length of query: 590
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 485
Effective length of database: 8,729,747
Effective search space: 4233927295
Effective search space used: 4233927295
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012788
(1770 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904329.1| NADH dehydrogenase subunit 2 [Mus musculus]. 200 3e-51
Alignment gi|XP_001480330.2| PREDICTED: 60S ribosomal protein L21-like [M... 99 8e-21
Alignment gi|XP_001479181.1| PREDICTED: 60S ribosomal protein L21 [Mus mu... 99 8e-21
Alignment gi|XP_003085875.1| PREDICTED: 60S ribosomal protein L21 [Mus mu... 99 8e-21
Alignment gi|XP_003084515.1| PREDICTED: 60S ribosomal protein L21-like [M... 98 2e-20
Alignment gi|XP_003086238.1| PREDICTED: 60S ribosomal protein L21-like [M... 98 2e-20
Alignment gi|XP_003085130.1| PREDICTED: 60S ribosomal protein L21-like [M... 98 2e-20
Alignment gi|XP_001473226.1| PREDICTED: 60S ribosomal protein L21-like [M... 98 2e-20
Alignment gi|XP_003084547.1| PREDICTED: 60S ribosomal protein L21-like [M... 98 2e-20
Alignment gi|XP_003086795.1| PREDICTED: 60S ribosomal protein L21-like [M... 98 2e-20
>ref|NP_904329.1| NADH dehydrogenase subunit 2 [Mus musculus].
Length = 345
Score = 200 bits (509), Expect = 3e-51
Identities = 125/343 (36%), Positives = 161/343 (46%)
Frame = +3
Query: 141 INPIIYTTLIITVMSGTXXXXXXXXXXXXXXGFEINLLAIIPVLIKNFNPRATEAATKYF 320
+NPI + T+ G G E +LLAIIP+LI NPR+TEAATKYF
Sbjct: 1 MNPITLAIIYFTIFLGPVITMSSTNLMLMWVGLEFSLLAIIPMLINKKNPRSTEAATKYF 60
Query: 321 LTQATASXXXXXXXXXXXXYSGQWTITKIFNPVAITIITMALAIKLGLSPFHF*VPEVTQ 500
+TQATAS G W + N + + + MAL++KLGL+PFHF +PEVTQ
Sbjct: 61 VTQATASMIILLAIVLNYKQLGTWMFQQQTNGLILNMTLMALSMKLGLAPFHFWLPEVTQ 120
Query: 501 GISXXXXXXXXXXXXXXXXSVLCQISQSINPNXXXXXXXXXXXXXXXXXXNQTQLRKIIA 680
GI S+L QI +N NQTQ+RKI+A
Sbjct: 121 GIPLHMGLILLTWQKIAPLSILIQIYPLLNSTIILMLAITSIFMGAWGGLNQTQMRKIMA 180
Query: 681 YSSIAHIG*MTAVLPYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIPXX 860
YSSIAH+G M A+LPYN NK P
Sbjct: 181 YSSIAHMGWMLAILPYNPSLTLLNLMIYIILTAPMFMALMLNNSMTINSISLLWNKTPAM 240
Query: 861 XXXXXXXXXXXXXXXXXXXFMPK*IIIQEITKNESIIMPTLIAITALLNLYFYIRLAYSS 1040
F+PK III E+ KN +IM TL+A+ ALLNL+FY RL YS+
Sbjct: 241 LTMISLMLLSLGGLPPLTGFLPKWIIITELMKNNCLIMATLMAMMALLNLFFYTRLIYST 300
Query: 1041 SLTMFPSTNNIKIK*QFEHTKQIKLLPTIIVLSTLVLPITPAL 1169
SLTMFP+ NN K+ TK + T+ ++ST+ LP+ P L
Sbjct: 301 SLTMFPTNNNSKMMTHQTKTKPNLMFSTLAIMSTMTLPLAPQL 343
>ref|XP_001480330.2| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 99.4 bits (246), Expect = 8e-21
Identities = 58/93 (62%), Positives = 65/93 (69%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN+KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNRKEPELLEPIPYEFMA 160
>ref|XP_001479181.1| PREDICTED: 60S ribosomal protein L21 [Mus musculus].
Length = 160
Score = 99.4 bits (246), Expect = 8e-21
Identities = 58/93 (62%), Positives = 65/93 (69%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN+KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNRKEPELLEPIPYEFMA 160
>ref|XP_003085875.1| PREDICTED: 60S ribosomal protein L21 [Mus musculus].
Length = 160
Score = 99.4 bits (246), Expect = 8e-21
Identities = 58/93 (62%), Positives = 65/93 (69%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN+KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNRKEPELLEPIPYEFMA 160
>ref|XP_003084515.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 116
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VK K AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 24 TQHAVGIIANKEVKDKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 83
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTNKKEPELLEP+P EFMA
Sbjct: 84 LKRQPAPPREAHFVRTNKKEPELLEPIPYEFMA 116
>ref|XP_003086238.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 116
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VK K AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 24 TQHAVGIIANKQVKDKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 83
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTNKKEPELLEP+P EFMA
Sbjct: 84 LKRQPAPPREAHFVRTNKKEPELLEPIPYEFMA 116
>ref|XP_003085130.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 97.8 bits (242), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_001473226.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 97.8 bits (242), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_003084547.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 97.8 bits (242), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>ref|XP_003086795.1| PREDICTED: 60S ribosomal protein L21-like [Mus musculus].
Length = 160
Score = 97.8 bits (242), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,810,224
Number of extensions: 847668
Number of successful extensions: 2637
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2627
Number of HSP's successfully gapped: 36
Length of query: 590
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 483
Effective length of database: 12,403,707
Effective search space: 5990990481
Effective search space used: 5990990481
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012788
(1770 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024027.1| NADH dehydrogenase subunit 2 [Homo sapiens]. 235 9e-62
Alignment gi|NP_000973.2| 60S ribosomal protein L21 [Homo sapiens]. 98 2e-20
>ref|YP_003024027.1| NADH dehydrogenase subunit 2 [Homo sapiens].
Length = 347
Score = 235 bits (600), Expect = 9e-62
Identities = 136/341 (39%), Positives = 175/341 (51%)
Frame = +3
Query: 141 INPIIYTTLIITVMSGTXXXXXXXXXXXXXXGFEINLLAIIPVLIKNFNPRATEAATKYF 320
+NP+ + T+ +GT G E+N+LA IPVL K NPR+TEAA KYF
Sbjct: 1 MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYF 60
Query: 321 LTQATASXXXXXXXXXXXXYSGQWTITKIFNPVAITIITMALAIKLGLSPFHF*VPEVTQ 500
LTQATAS SGQWT+T N + +I MA+A+KLG++PFHF VPEVTQ
Sbjct: 61 LTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQ 120
Query: 501 GISXXXXXXXXXXXXXXXXSVLCQISQSINPNXXXXXXXXXXXXXXXXXXNQTQLRKIIA 680
G S++ QIS S+N + NQTQLRKI+A
Sbjct: 121 GTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILA 180
Query: 681 YSSIAHIG*MTAVLPYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIPXX 860
YSSI H+G M AVLPYN NK+
Sbjct: 181 YSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWL 240
Query: 861 XXXXXXXXXXXXXXXXXXXFMPK*IIIQEITKNESIIMPTLIAITALLNLYFYIRLAYSS 1040
F+PK II+E TKN S+I+PT++A LLNLYFY+RL YS+
Sbjct: 241 TPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYST 300
Query: 1041 SLTMFPSTNNIKIK*QFEHTKQIKLLPTIIVLSTLVLPITP 1163
S+T+ P +NN+K+K QFEHTK LPT+I L+TL+LPI+P
Sbjct: 301 SITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISP 341
>ref|NP_000973.2| 60S ribosomal protein L21 [Homo sapiens].
Length = 160
Score = 98.2 bits (243), Expect = 2e-20
Identities = 58/93 (62%), Positives = 64/93 (68%)
Frame = +2
Query: 1355 TQQAGGREEKF*VKGKRRAKIINERIEQKKNSKNRDCFLIFVNENEGKKEEFLEKGRRVQ 1534
TQ A G VKGK AK IN RIE K+SK+RD FL V EN+ KK+E EKG VQ
Sbjct: 68 TQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQ 127
Query: 1535 LKGKAALPIEAHFVRTNKKEPELLEPVPDEFMA 1633
LK + A P EAHFVRTN KEPELLEP+P EFMA
Sbjct: 128 LKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,696,848
Number of extensions: 1002428
Number of successful extensions: 3051
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3027
Number of HSP's successfully gapped: 3
Length of query: 590
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 482
Effective length of database: 14,737,052
Effective search space: 7103259064
Effective search space used: 7103259064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012788
(1770 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 763 0.0
Sscrofa_Chr02 547 e-153
Sscrofa_Chr09 462 e-127
Sscrofa_Chr04 218 8e-54
Sscrofa_Chr11 121 1e-24
Sscrofa_Chr14 107 2e-20
gb|GL894058.2| Sus scrofa unplaced genomic scaffold ChrUScaf1942 98 2e-17
Sscrofa_Chr06 90 5e-15
Sscrofa_Chr05 90 5e-15
Sscrofa_Chr13 78 2e-11
>Sscrofa_ChrX
|| Length = 144288218
Score = 763 bits (385), Expect = 0.0
Identities = 838/989 (84%)
Strand = Plus / Plus
Query: 71 agtaaggtcagctaagctaagctatcgggcccataccccgaaaatgttggttcataccct 130
||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||
Sbjct: 23492117 agtaaggtcagctaaattaagctatcaggcccataccccaaaaatgttggttcatatcct 23492176
Query: 131 tcccatactaattaatcccattatctacactacccttatcataacagtaatgtccggaac 190
|||||||||||| ||| | || |||| ||| | ||| |||| || || | ||||||||
Sbjct: 23492177 tcccatactaataaattctatcatctccaccatcctcatcacgactgttgtatccggaac 23492236
Query: 191 catactagtaataatcagctcacactgactactcatctgaatcggattcgaaataaacct 250
||||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct: 23492237 tatactagcaatgattagctcacactgactactcatctgaataggatttgaaataaactt 23492296
Query: 251 attagcaataatcccagtattaataaaaaattttaacccacgagccacagaagcagccac 310
| ||||||||||||| |||||||||||||| |||||||||| ||| | |||| |||| |
Sbjct: 23492297 actagcaataatccctgtattaataaaaaactttaacccacaagctatggaagtagcctc 23492356
Query: 311 aaaatatttcctaacacaagccacagcctccataatactaataatagccatcatcatcaa 370
|||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 23492357 aaaatacttcctaacccaagctacagcctctataatactaataatagctatcatcatcaa 23492416
Query: 371 cctcctatattctggccaatggaccattacaaaaatatttaacccagtagcaataacaat 430
||| ||||| || |||||| | || ||||||||||||||||||||| |||| ||| ||
Sbjct: 23492417 cctgctatactccggccaaggaactattacaaaaatatttaacccaacagcagcaacgat 23492476
Query: 431 aataaccatggccctagccataaaactaggactctcacctttccacttctgagtcccaga 490
|||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 23492477 aataaccacagccctggccataaaactaggactatcacccttccacttttgagtgccaga 23492536
Query: 491 agtaacccaaggcatttcactacaagcaggcctactgttactaacatgacaaaaactagc 550
||| |||| |||||| ||| | | | |||| |||||| |||||||||||||||||||| |
Sbjct: 23492537 agtcacccgaggcatctcattgcgaacaggtctactgctactaacatgacaaaaactacc 23492596
Query: 551 cccattatcagtactatgccaaatctcacaatcaatcaacccaaacctaatactaactat 610
|||| ||||||||||| ||||||||||| ||||||| ||| |||||||||||||| ||
Sbjct: 23492597 cccactatcagtactacgccaaatctcaaaatcaattaacttcaacctaatactaaccat 23492656
Query: 611 agccatattatcaattttaatcggagggtgaggagggctaaatcaaacccaacttcgaaa 670
|||||| | ||||| || | ||||| ||||| | |||||||||||||||| |||||
Sbjct: 23492657 agccatgctgtcaatcctagtaggaggatgaggcagattaaatcaaacccaactacgaaa 23492716
Query: 671 aatcatagcatactcatcaatcgcacacataggatgaatgacagcagtattaccatacaa 730
|||||| ||||||||||||||| |||| ||| ||||||| |||||||| ||||||||||
Sbjct: 23492717 aatcatggcatactcatcaatcacacatataagatgaataacagcagtcctaccatacaa 23492776
Query: 731 cacaaccataacaatcttaaacctactaatttacatcacaataacactagcaatattcat 790
|||||| || |||||| | ||||||||||| || || |||||||||| |||| |||||
Sbjct: 23492777 cacaacaatgacaatcctgaacctactaatctatattgtaataacactaacaatgttcat 23492836
Query: 791 actattaatccacagctcagcaaccacaactttatccctatcccatacatgaaacaaaat 850
|||| |||| |||| |||| | |||||||| |||| ||||| || |||||||||| ||
Sbjct: 23492837 actactaattcacaactcaaccaccacaacactatcactatcgcacacatgaaacagaac 23492896
Query: 851 acccgtcatcacaagcctaataatagtaaccctactctcaataggaggcctgcctccact 910
|||| |||| |||||||||||| | || ||||| || ||||||||||| || |||||| |
Sbjct: 23492897 acccatcattacaagcctaatactggtgaccctgctttcaataggaggtctacctccatt 23492956
Query: 911 atcaggatttatgccaaaatgaataattattcaagaaataacaaaaaatgaaagcatcat 970
||||||||| |||||||| ||||| |||||||||||||| |||||||||| ||| || ||
Sbjct: 23492957 atcaggattcatgccaaagtgaatgattattcaagaaatgacaaaaaatggaagtattat 23493016
Query: 971 catgccaacactcatagcaataacagcactgctaaacctctatttctacatacgactagc 1030
|| |||||||| ||||| ||| |||||||||| ||||| || || ||||||||||||
Sbjct: 23493017 tataccaacacttatagccatagcagcactgctgaacctttacttttacatacgactaat 23493076
Query: 1031 ctactcctcctcactgactatgttcccat 1059
||| ||||||||||| || || |||||||
Sbjct: 23493077 ctattcctcctcactaaccatattcccat 23493105
>Sscrofa_Chr02
|| Length = 162569375
Score = 547 bits (276), Expect = e-153
Identities = 372/404 (92%)
Strand = Plus / Plus
Query: 660 caacttcgaaaaatcatagcatactcatcaatcgcacacataggatgaatgacagcagta 719
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 120051041 caactacgaaaaatcatagcatattcatcaatcgcacacataggatgaataacagcagta 120051100
Query: 720 ttaccatacaacacaaccataacaatcttaaacctactaatttacatcacaataacacta 779
||||||| |||||||||||||||||| |||| |||||||| ||||| | ||||||||||
Sbjct: 120051101 ctaccatataacacaaccataacaatcctaaatctactaatctacattataataacacta 120051160
Query: 780 gcaatattcatactattaatccacagctcagcaaccacaactttatccctatcccataca 839
|||||||||||| || |||| ||||| ||| |||||||||| || |||||||||||||||
Sbjct: 120051161 gcaatattcatattactaattcacagttcaacaaccacaaccttgtccctatcccataca 120051220
Query: 840 tgaaacaaaatacccgtcatcacaagcctaataatagtaaccctactctcaataggaggc 899
||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 120051221 tgaaacaaaatacccatcattacaagcctaataataataaccctactctcaataggaggc 120051280
Query: 900 ctgcctccactatcaggatttatgccaaaatgaataattattcaagaaataacaaaaaat 959
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 120051281 ttgcccccactatcaggatttataccaaaatgaataattattcaagaaataacaaaaaat 120051340
Query: 960 gaaagcatcatcatgccaacactcatagcaataacagcactgctaaacctctatttctac 1019
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 120051341 gaaagcatcatcataccaacactcatagcaataacagcactactaaacctctatttttat 120051400
Query: 1020 atacgactagcctactcctcctcactgactatgttcccatccac 1063
|||||||||||||| ||||||||||| || || || ||||||||
Sbjct: 120051401 atacgactagcctattcctcctcactaaccatatttccatccac 120051444
Score = 135 bits (68), Expect = 9e-29
Identities = 122/140 (87%)
Strand = Plus / Plus
Query: 70 cagtaaggtcagctaagctaagctatcgggcccataccccgaaaatgttggttcataccc 129
|||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 84071008 cagtaaggtcagctaaattaagctattgggcccataccccgaagatgttggttcatatcc 84071067
Query: 130 ttcccatactaattaatcccattatctacactacccttatcataacagtaatgtccggaa 189
||||||||||||| || || ||||||||| | |||||||||| ||| | || || ||||
Sbjct: 84071068 ttcccatactaataaaccctattatctacgccacccttatcacaaccattatatctggaa 84071127
Query: 190 ccatactagtaataatcagc 209
||||| |||| |||||||||
Sbjct: 84071128 ccatattagtgataatcagc 84071147
Score = 81.8 bits (41), Expect = 1e-12
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1114 tacttcccacaataattgtattatcaacactagtcctacctataacaccagccctctcgt 1173
|||| ||||||||||||||||||||||||||| | ||||| |||||||||||||| || |
Sbjct: 120051495 tactccccacaataattgtattatcaacactaattctacccataacaccagccctttcat 120051554
Query: 1174 ccctaaact 1182
|||| ||||
Sbjct: 120051555 ccctgaact 120051563
>Sscrofa_Chr09
|| Length = 153670197
Score = 462 bits (233), Expect = e-127
Identities = 239/241 (99%)
Strand = Plus / Plus
Query: 823 tatccctatcccatacatgaaacaaaatacccgtcatcacaagcctaataatagtaaccc 882
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5426371 tatccctatcccatacatgaaacaagatacccgtcatcacaagcctaataatagtaaccc 5426430
Query: 883 tactctcaataggaggcctgcctccactatcaggatttatgccaaaatgaataattattc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5426431 tactctcaataggaggcctgcctccactatcaggatttatgccaaaatgaataatcattc 5426490
Query: 943 aagaaataacaaaaaatgaaagcatcatcatgccaacactcatagcaataacagcactgc 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426491 aagaaataacaaaaaatgaaagcatcatcatgccaacactcatagcaataacagcactgc 5426550
Query: 1003 taaacctctatttctacatacgactagcctactcctcctcactgactatgttcccatcca 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426551 taaacctctatttctacatacgactagcctactcctcctcactgactatgttcccatcca 5426610
Query: 1063 c 1063
|
Sbjct: 5426611 c 5426611
Score = 161 bits (81), Expect = 2e-36
Identities = 141/161 (87%)
Strand = Plus / Minus
Query: 465 tcacctttccacttctgagtcccagaagtaacccaaggcatttcactacaagcaggccta 524
||||| ||||| || |||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 136196032 tcacccttccatttttgagccccagaagtaacccaaggcatctcactacaagcaggctta 136195973
Query: 525 ctgttactaacatgacaaaaactagccccattatcagtactatgccaaatctcacaatca 584
|| || ||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||
Sbjct: 136195972 ctattgctaacatgacaaaaattagctccactatcagtactgtgccaaatctcacaatca 136195913
Query: 585 atcaacccaaacctaatactaactatagccatattatcaat 625
|| || || || ||||||||||| || ||||| |||||||
Sbjct: 136195912 attaatcctaatctaatactaaccatggccatgctatcaat 136195872
Score = 129 bits (65), Expect = 6e-27
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1114 tacttcccacaataattgtattatcaacactagtcctacctataacaccagccctctcgt 1173
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5426662 tacttcccacaataattgtattatcaacactaatcctacctataacaccagccctctcgt 5426721
Query: 1174 ccctaaact 1182
|||||||||
Sbjct: 5426722 ccctaaact 5426730
>Sscrofa_Chr04
|| Length = 143465943
Score = 218 bits (110), Expect = 8e-54
Identities = 146/158 (92%)
Strand = Plus / Minus
Query: 906 ccactatcaggatttatgccaaaatgaataattattcaagaaataacaaaaaatgaaagc 965
||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 27491573 ccactatcaggctttataccaaaatgaataaagattcaagaaataacaaaaaatgaaagc 27491514
Query: 966 atcatcatgccaacactcatagcaataacagcactgctaaacctctatttctacatacga 1025
|||||||| ||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 27491513 atcatcataccaacgctcatagcaataacagcactactaaacctctatttttatatacga 27491454
Query: 1026 ctagcctactcctcctcactgactatgttcccatccac 1063
|||||||||||||||||||| || || |||||||||||
Sbjct: 27491453 ctagcctactcctcctcactaaccatattcccatccac 27491416
Score = 218 bits (110), Expect = 8e-54
Identities = 146/158 (92%)
Strand = Plus / Plus
Query: 906 ccactatcaggatttatgccaaaatgaataattattcaagaaataacaaaaaatgaaagc 965
||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 27695121 ccactatcaggctttataccaaaatgaataaagattcaagaaataacaaaaaatgaaagc 27695180
Query: 966 atcatcatgccaacactcatagcaataacagcactgctaaacctctatttctacatacga 1025
|||||||| ||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 27695181 atcatcataccaacgctcatagcaataacagcactactaaacctctatttttatatacga 27695240
Query: 1026 ctagcctactcctcctcactgactatgttcccatccac 1063
|||||||||||||||||||| || || |||||||||||
Sbjct: 27695241 ctagcctactcctcctcactaaccatattcccatccac 27695278
>Sscrofa_Chr11
|| Length = 87690581
Score = 121 bits (61), Expect = 1e-24
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1555 acccatagaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgt 1614
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 4201840 acccagagaagctcacttcgtgagaaccaacggaaaggagcctgaactgttggaacccat 4201899
Query: 1615 tccggatgaattcatggcatgatga 1639
||| ||||||||||||||||||||
Sbjct: 4201900 tccttatgaattcatggcatgatga 4201924
>Sscrofa_Chr14
|| Length = 153851969
Score = 107 bits (54), Expect = 2e-20
Identities = 63/66 (95%)
Strand = Plus / Minus
Query: 310 caaaatatttcctaacacaagccacagcctccataatactaataatagccatcatcatca 369
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 76577958 caaaatatttcctaactcaagccacagcctctatgatactaataatagccatcatcatca 76577899
Query: 370 acctcc 375
||||||
Sbjct: 76577898 acctcc 76577893
Score = 77.8 bits (39), Expect = 2e-11
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 1555 acccatagaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgt 1614
||||| ||||||||||||| |||||||||| ||||||||||||| |||||||||| |
Sbjct: 59783591 acccagagaagctcacttcatgagaaccaatggaaaggagcctgaatggttggaacccat 59783650
Query: 1615 tccggatgaattcatggcatgat 1637
||| ||||||||| ||||||||
Sbjct: 59783651 tccttatgaattcacggcatgat 59783673
>gb|GL894058.2| Sus scrofa unplaced genomic scaffold ChrUScaf1942
Length = 23428
Score = 97.6 bits (49), Expect = 2e-17
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 1555 acccatagaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgt 1614
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 480 acccagagaagctcactttgtgagaaccaatggaaaggagcctgaactgttggaacccat 539
Query: 1615 tccggatgaattcatggcatg 1635
||| ||||||||||||||||
Sbjct: 540 tccttatgaattcatggcatg 560
>Sscrofa_Chr06
|| Length = 157765593
Score = 89.7 bits (45), Expect = 5e-15
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1561 agaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgttccgga 1620
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct: 46585439 agaagctcacttcgtgagaaccaatggaaaggagcctgaactgttggaacccattcctta 46585498
Query: 1621 tgaattcatggcatgat 1637
|| ||||||||||||||
Sbjct: 46585499 tg-attcatggcatgat 46585514
Score = 69.9 bits (35), Expect = 5e-09
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1563 aagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgttccggatg 1622
|||||||||| ||||||||||| |||||||||| ||||||| |||| | |||| |||
Sbjct: 103976413 aagctcactttgtgagaaccaatggaaaggagcctcaactgttagaactcattccctatg 103976354
Query: 1623 aattcatggcatgat 1637
|||||||||||||||
Sbjct: 103976353 aattcatggcatgat 103976339
>Sscrofa_Chr05
|| Length = 111506441
Score = 89.7 bits (45), Expect = 5e-15
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 1555 acccatagaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgt 1614
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 93784922 acccagagaagctcactttgtgagaaccaatggaaaggagcctgaactgttggaacccat 93784981
Query: 1615 tccggatgaattcatggcatg 1635
||| ||||||||||| ||||
Sbjct: 93784982 tccttatgaattcatgacatg 93785002
Score = 65.9 bits (33), Expect = 7e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 1561 agaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgttccgga 1620
|||||||||||||||||||| ||| ||||||||||||| |||| |||| | |||| |
Sbjct: 39420988 agaagctcacttcgtgagaagcaatgaaaaggagcctgacgtgttagaacacattcccta 39420929
Query: 1621 tgaattcatggcatgat 1637
| |||||||||||||||
Sbjct: 39420928 taaattcatggcatgat 39420912
Score = 65.9 bits (33), Expect = 7e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 1561 agaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgttccgga 1620
|||||||||||||||||||| ||| ||||||||||||| |||| |||| | |||| |
Sbjct: 39450968 agaagctcacttcgtgagaagcaatgaaaaggagcctgacgtgttagaacacattcccta 39450909
Query: 1621 tgaattcatggcatgat 1637
| |||||||||||||||
Sbjct: 39450908 taaattcatggcatgat 39450892
>Sscrofa_Chr13
|| Length = 218635234
Score = 77.8 bits (39), Expect = 2e-11
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 1555 acccatagaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgt 1614
||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| |
Sbjct: 94057629 acccagagaagctcacttcatgagaaccaatggaaagaagcctgaactgttggaaccgat 94057688
Query: 1615 tccggatgaattcatggcatgat 1637
|| ||||||||||||||||||
Sbjct: 94057689 tctttatgaattcatggcatgat 94057711
Score = 61.9 bits (31), Expect = 1e-06
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1561 agaagctcacttcgtgagaaccaacaaaaaggagcctgaactgttggaacccgttccgga 1620
||||||||| ||| ||||| |||| ||||||||||||||||||||||||| ||| |
Sbjct: 145921661 agaagctcagttcctgagagccaatggaaaggagcctgaactgttggaacccattctcta 145921720
Query: 1621 tgaattcatggcatg 1635
||||||| |||||||
Sbjct: 145921721 tgaattcgtggcatg 145921735
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,409,724
Number of extensions: 426
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 25
Length of query: 1770
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1748
Effective length of database: 2,808,408,574
Effective search space: 4909098187352
Effective search space used: 4909098187352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)