Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012790
(1177 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069390.1| DNA damage-inducible transcript 4 protein [B... 394 e-110
Alignment gi|NP_001074988.1| DNA damage-inducible transcript 4-like prote... 103 3e-22
>ref|NP_001069390.1| DNA damage-inducible transcript 4 protein [Bos taurus].
Length = 229
Score = 394 bits (1012), Expect = e-110
Identities = 202/231 (87%), Positives = 203/231 (87%)
Frame = +3
Query: 216 MPNLWDRFXXXXXXXXXXXXRTPTPNQPPRSAWGSAAREEGLGRCAXXXXXXXXXXXXXX 395
MP+LWDRF RTPTPNQPPRSAWGSAAREEGLGRC
Sbjct: 1 MPSLWDRFSSSSSSSSLS--RTPTPNQPPRSAWGSAAREEGLGRCGSLESSDCESLDSSN 58
Query: 396 XGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG 575
GFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG
Sbjct: 59 SGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG 118
Query: 576 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL 755
QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL
Sbjct: 119 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL 178
Query: 756 DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 908
DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
Sbjct: 179 DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 229
>ref|NP_001074988.1| DNA damage-inducible transcript 4-like protein [Bos taurus].
Length = 193
Score = 103 bits (257), Expect = 3e-22
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 11/175 (6%)
Frame = +3
Query: 417 DSAYLDGVSLPDFE----LLSDPE------DEHLCASLMQLLQESLAQARLGSRRPARLL 566
D + G L DF+ ++ +P +E C SL+++L+ L++++ +R+L
Sbjct: 20 DHGFYPGSLLNDFDYWDYVVPEPNLNEVVFEETTCQSLVKMLENCLSKSKHTKLGCSRVL 79
Query: 567 MPGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLV 746
+P +L ++ +++LRL+ +EPCGLRG ++ V +E C + ++ D S+VPTF+LTLV
Sbjct: 80 VPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDSSVVPTFELTLV 139
Query: 747 LRLDSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYS-SEQLLIEEC 908
+ ++ W + F S F G ++L LS+GFR++KKKLYS +IEEC
Sbjct: 140 FKQENCSWTSFRDFFFS-RGRFSSGLRRTLILSSGFRLVKKKLYSLIGTTVIEEC 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,934,596
Number of extensions: 1054184
Number of successful extensions: 5017
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4988
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012790
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012790
(1177 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546156.2| PREDICTED: similar to RTP801 isoform 1 [Canis f... 387 e-107
Alignment gi|XP_861853.1| PREDICTED: similar to RTP801 isoform 2 [Canis f... 261 7e-70
Alignment gi|XP_544999.2| PREDICTED: similar to DNA-damage-inducible tran... 101 1e-21
>ref|XP_546156.2| PREDICTED: similar to RTP801 isoform 1 [Canis familiaris].
Length = 230
Score = 387 bits (994), Expect = e-107
Identities = 198/231 (85%), Positives = 203/231 (87%)
Frame = +3
Query: 216 MPNLWDRFXXXXXXXXXXXXRTPTPNQPPRSAWGSAAREEGLGRCAXXXXXXXXXXXXXX 395
MP+LWDRF RTPTP+QPPRSAWGSAAREEGLGRCA
Sbjct: 1 MPSLWDRFSSSSSSSSSLP-RTPTPDQPPRSAWGSAAREEGLGRCASLESSDCESLDSSN 59
Query: 396 XGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG 575
GFGPEEDSAYLDGVSLPDFELLSDPEDEHLCA+LMQLLQESL+QARLGSRRPARLLMPG
Sbjct: 60 SGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPG 119
Query: 576 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL 755
QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCH+VGQLALDPSLVPTFQLTLVLRL
Sbjct: 120 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHNVGQLALDPSLVPTFQLTLVLRL 179
Query: 756 DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 908
DSRLWPKIQGLFSSANS FVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
Sbjct: 180 DSRLWPKIQGLFSSANSSFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 230
>ref|XP_861853.1| PREDICTED: similar to RTP801 isoform 2 [Canis familiaris].
Length = 136
Score = 261 bits (668), Expect = 7e-70
Identities = 133/136 (97%), Positives = 135/136 (99%)
Frame = +3
Query: 501 MQLLQESLAQARLGSRRPARLLMPGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKS 680
MQLLQESL+QARLGSRRPARLLMPGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKS
Sbjct: 1 MQLLQESLSQARLGSRRPARLLMPGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKS 60
Query: 681 CHSVGQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRV 860
CH+VGQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANS FVPGFSQSLTLSTGFRV
Sbjct: 61 CHNVGQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSSFVPGFSQSLTLSTGFRV 120
Query: 861 IKKKLYSSEQLLIEEC 908
IKKKLYSSEQLLIEEC
Sbjct: 121 IKKKLYSSEQLLIEEC 136
>ref|XP_544999.2| PREDICTED: similar to DNA-damage-inducible transcript 4-like [Canis
familiaris].
Length = 193
Score = 101 bits (252), Expect = 1e-21
Identities = 62/174 (35%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Frame = +3
Query: 399 GFGPEE---DSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLM 569
GF P D Y D V +P+ L +E C SL ++L+ L++++ +++L+
Sbjct: 22 GFHPGSLLNDFDYWDYV-VPEPNLNEVIFEETTCQSLAKMLENCLSKSKQTKLGCSKVLV 80
Query: 570 PGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVL 749
P +L ++ +++LRL+ +EPCGLRG ++ V +E C + ++ D S+VPTF+LTLV
Sbjct: 81 PEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDKIVCDSSVVPTFELTLVF 140
Query: 750 RLDSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYS-SEQLLIEEC 908
+ ++ W + F S F G ++L LS+GFR++KKKLYS +IEEC
Sbjct: 141 KQENCSWTSFRDFFFS-RGRFSSGLRRTLILSSGFRLVKKKLYSLIGTTVIEEC 193
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,682,799
Number of extensions: 1088614
Number of successful extensions: 5393
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5351
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012790
(1177 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230381.1| DNA damage-inducible transcript 4 protein [S... 402 e-112
Alignment gi|XP_003129347.1| PREDICTED: DNA damage-inducible transcript 4... 107 1e-23
>ref|NP_001230381.1| DNA damage-inducible transcript 4 protein [Sus scrofa].
Length = 231
Score = 402 bits (1032), Expect = e-112
Identities = 204/231 (88%), Positives = 204/231 (88%)
Frame = +3
Query: 216 MPNLWDRFXXXXXXXXXXXXRTPTPNQPPRSAWGSAAREEGLGRCAXXXXXXXXXXXXXX 395
MPNLWDRF RTPTPNQPPRSAWGSAAREEGLGRCA
Sbjct: 1 MPNLWDRFSSSSSSSSSSLSRTPTPNQPPRSAWGSAAREEGLGRCASLESSDCESLDSSN 60
Query: 396 XGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG 575
GFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG
Sbjct: 61 SGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG 120
Query: 576 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL 755
QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL
Sbjct: 121 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL 180
Query: 756 DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 908
DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
Sbjct: 181 DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 231
>ref|XP_003129347.1| PREDICTED: DNA damage-inducible transcript 4-like protein-like [Sus
scrofa].
Length = 193
Score = 107 bits (268), Expect = 1e-23
Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Frame = +3
Query: 417 DSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPGQLVSQVG 596
D Y D V +P+ L +E C SL+Q+L++ L++++ +++L+P +L ++
Sbjct: 31 DFDYWDYV-VPEPNLNEVVFEETTCQSLVQMLEKCLSKSKHTKLGCSKVLVPEKLTQRIA 89
Query: 597 KELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLWPK 776
+++LRL+ +EPCGLRG ++ V +E C + ++ DPS+VPTF+LTLV + ++ W
Sbjct: 90 QDVLRLSSTEPCGLRGCVIHVNLEVENVCKKLDRIVCDPSVVPTFELTLVFKQETCSWTS 149
Query: 777 IQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYS-SEQLLIEEC 908
+ F S F G ++L LS+GFR++KKKLYS +IEEC
Sbjct: 150 FRDFFFS-RGRFSSGLGRTLILSSGFRLVKKKLYSLIGTTVIEEC 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,853,704
Number of extensions: 683648
Number of successful extensions: 3274
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012790
(1177 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083359.1| DNA damage-inducible transcript 4 protein [Mus ... 367 e-102
Alignment gi|NP_084419.2| DNA damage-inducible transcript 4-like protein ... 105 9e-23
>ref|NP_083359.1| DNA damage-inducible transcript 4 protein [Mus musculus].
Length = 229
Score = 367 bits (943), Expect = e-102
Identities = 189/231 (81%), Positives = 196/231 (84%)
Frame = +3
Query: 216 MPNLWDRFXXXXXXXXXXXXRTPTPNQPPRSAWGSAAREEGLGRCAXXXXXXXXXXXXXX 395
MP+LWDRF RTP ++PPRSAWGSAAREEGL RCA
Sbjct: 1 MPSLWDRFSSSSSSSSSS--RTPAADRPPRSAWGSAAREEGLDRCASLESSDCESLDSSN 58
Query: 396 XGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMPG 575
GFGPEEDS+YLDGVSLPDFELLSDPEDEHLCA+LMQLLQESL+QARLGSRRPARLLMP
Sbjct: 59 SGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPS 118
Query: 576 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRL 755
QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSV QLALDPSLVPTFQLTLVLRL
Sbjct: 119 QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRL 178
Query: 756 DSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 908
DSRLWPKIQGL SSANS VPG+SQSLTLSTGFRVIKKKLYSSEQLLIEEC
Sbjct: 179 DSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC 229
>ref|NP_084419.2| DNA damage-inducible transcript 4-like protein [Mus musculus].
Length = 193
Score = 105 bits (261), Expect = 9e-23
Identities = 60/175 (34%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Frame = +3
Query: 417 DSAYLDGVSLPDFE----LLSDPE------DEHLCASLMQLLQESLAQARLGSRRPARLL 566
D Y G L DF+ ++ +P +E C +L+++L+ L++++ +++L
Sbjct: 20 DGGYHPGSLLSDFDYWDYVVPEPNLNEVVFEETTCQNLVKMLENCLSRSKQTKLGCSKVL 79
Query: 567 MPGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLV 746
+P +L ++ +++LRL+ +EPCGLRG ++ V +E C + ++ D S+VPTF+LTLV
Sbjct: 80 VPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDASVVPTFELTLV 139
Query: 747 LRLDSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYS-SEQLLIEEC 908
+ +S W ++ F S F G ++L LS+GFR++KKKLYS +IEEC
Sbjct: 140 FKQESCPWTSLKDFFFS-RGRFSSGLKRTLILSSGFRLVKKKLYSLIGTTVIEEC 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,139,873
Number of extensions: 866580
Number of successful extensions: 4087
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4042
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012790
(1177 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061931.1| DNA damage-inducible transcript 4 protein [Homo... 375 e-104
Alignment gi|NP_660287.1| DNA damage-inducible transcript 4-like protein ... 103 4e-22
>ref|NP_061931.1| DNA damage-inducible transcript 4 protein [Homo sapiens].
Length = 232
Score = 375 bits (962), Expect = e-104
Identities = 192/232 (82%), Positives = 198/232 (85%), Gaps = 1/232 (0%)
Frame = +3
Query: 216 MPNLWDRFXXXXXXXXXXXX-RTPTPNQPPRSAWGSAAREEGLGRCAXXXXXXXXXXXXX 392
MP+LWDRF RTPTP++PPRSAWGSA REEG R
Sbjct: 1 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS 60
Query: 393 XXGFGPEEDSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLMP 572
GFGPEED+AYLDGVSLPDFELLSDPEDEHLCA+LMQLLQESLAQARLGSRRPARLLMP
Sbjct: 61 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP 120
Query: 573 GQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR 752
QLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR
Sbjct: 121 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR 180
Query: 753 LDSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 908
LDSRLWPKIQGLFSSANSPF+PGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
Sbjct: 181 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 232
>ref|NP_660287.1| DNA damage-inducible transcript 4-like protein [Homo sapiens].
Length = 193
Score = 103 bits (256), Expect = 4e-22
Identities = 58/164 (35%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Frame = +3
Query: 399 GFGPEE---DSAYLDGVSLPDFELLSDPEDEHLCASLMQLLQESLAQARLGSRRPARLLM 569
G+ PE D Y D V +P+ L +E C +L+++L+ L++++ +++L+
Sbjct: 22 GYHPESLLSDFDYWDYV-VPEPNLNEVIFEESTCQNLVKMLENCLSKSKQTKLGCSKVLV 80
Query: 570 PGQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVL 749
P +L ++ +++LRL+ +EPCGLRG ++ V +E C + ++ D S+VPTF+LTLV
Sbjct: 81 PEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDSSVVPTFELTLVF 140
Query: 750 RLDSRLWPKIQGLFSSANSPFVPGFSQSLTLSTGFRVIKKKLYS 881
+ ++ W + F S F GF ++L LS+GFR++KKKLYS
Sbjct: 141 KQENCSWTSFRDFFFS-RGRFSSGFRRTLILSSGFRLVKKKLYS 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,657,009
Number of extensions: 1052367
Number of successful extensions: 5226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5192
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012790
(1177 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 478 e-132
>Sscrofa_Chr14
|| Length = 153851969
Score = 478 bits (241), Expect = e-132
Identities = 361/393 (91%), Gaps = 6/393 (1%)
Strand = Plus / Plus
Query: 759 tcacgcctctggcctaagatccaggggctgtttagctccgccaactctcccttcgtcccc 818
|||||| ||| ||||||||||| |||||||||||| |||||||||||||| || ||||||
Sbjct: 81124888 tcacgcttcttgcctaagatccgggggctgtttagttccgccaactctccttttgtcccc 81124947
Query: 819 -ggcttcagccagtccctgacgctgagcactggcttccgagtcatcaagaagaagctgta 877
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 81124948 cggcttcagccagtccctgacgctgagcactg-cttccgagtcatcaagaagaagctgta 81125006
Query: 878 cagctccgagcagctgctcattgaagaatgttgaacttgggcctgggggccgacactgcc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81125007 cagctccgagcagctgctcattgaagaatgttgaacttgggcctgggggccgacactgcc 81125066
Query: 938 cccatggcagagacagttgaacttttgggggtggacgttggcaggcaggaactgaaggcc 997
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 81125067 cccatggcagagacagttgaactttt-ggggtggacgttggcaggcaggagctgagggcc 81125125
Query: 998 tgttgcctgtcgttagaaaactgacaacagcccattgaaggggaggaaggttaaactggg 1057
|||||||||||||||||||||||||||||||| || |||||||||||| | | |||||
Sbjct: 81125126 tgttgcctgtcgttagaaaactgacaacagccacctg-aggggaggaaggctgagctggg 81125184
Query: 1058 gggaaactactggtttcctaaaaagctcaatggggccaggaatgggtgggctccaatttg 1117
||||| |||||| || |||| |||||||||||||| || | |||||| |||||| | |||
Sbjct: 81125185 gggaacctactgtttccctagaaagctcaatgggg-catgtatgggt-ggctcccagttg 81125242
Query: 1118 ggggaacaccccgcccctcggtacgggagcatg 1150
|||| |||||||||||||| |||| | ||||||
Sbjct: 81125243 ggggcacaccccgcccctctgtactgtagcatg 81125275
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 5 ggaccgaggcaggccgagggggaggtgaggctgaggagaagggacaggtctgggcagagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81124467 ggaccgaggcaggccgagggggaggtgaggctgaggagaagggacaggtctgggcagagc 81124526
Query: 65 tcgggggttggcaccagttcgcgcacccattcaagcggtcaagcggctgtacgcactcgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81124527 tcgggggttggcaccagttcgcgcacccattcaagcggtcaagcggctgtacgcactcgt 81124586
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,458,350
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 1177
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1156
Effective length of database: 2,808,413,156
Effective search space: 3246525608336
Effective search space used: 3246525608336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)