Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012796
(1490 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029875.1| elongation of very long chain fatty acids pr... 549 e-156
Alignment gi|NP_001071510.1| elongation of very long chain fatty acids pr... 365 e-101
Alignment gi|NP_001092520.1| elongation of very long chain fatty acids pr... 217 2e-56
Alignment gi|NP_001040062.1| elongation of very long chain fatty acids pr... 178 1e-44
Alignment gi|NP_001076986.1| elongation of very long chain fatty acids pr... 172 7e-43
Alignment gi|NP_001095625.1| elongation of very long chain fatty acids pr... 83 7e-16
Alignment gi|NP_001179235.1| elongation of very long chain fatty acids pr... 81 3e-15
Alignment gi|XP_002698497.1| PREDICTED: elongation of very long chain fat... 81 3e-15
>ref|NP_001029875.1| elongation of very long chain fatty acids protein 1 [Bos taurus].
Length = 279
Score = 549 bits (1414), Expect = e-156
Identities = 253/279 (90%), Positives = 272/279 (97%)
Frame = +1
Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
MEA+VNLYQEMMKHADPR+Q YPLM SPLLMTSILL+YVYFVLSLGPR+MANRKPFQLRG
Sbjct: 1 MEAIVNLYQEMMKHADPRVQGYPLMESPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG 60
Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
FMVVYNFSLVALSLYIVYEFLMSGWLS+YTWRCDPVDFSN+PEALRMVRVAWLFLFSKFI
Sbjct: 61 FMVVYNFSLVALSLYIVYEFLMSGWLSSYTWRCDPVDFSNNPEALRMVRVAWLFLFSKFI 120
Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
EL+DT+IF+LRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELIDTLIFVLRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 180
Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+PVIIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFLPSCNYQYPVIIHLIWMYG 240
Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
T+FF LFSNFWYQ+YTKGKRLPRV QNG PGT +VKAN
Sbjct: 241 TIFFVLFSNFWYQSYTKGKRLPRVSQQNGVPGTTKVKAN 279
>ref|NP_001071510.1| elongation of very long chain fatty acids protein 7 [Bos taurus].
Length = 281
Score = 365 bits (938), Expect = e-101
Identities = 160/261 (61%), Positives = 211/261 (80%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V LY +K ADPR++++ LM SPL T IL YVYFV SLGP+LM NRKPF+L+ M+
Sbjct: 11 VRLYDNWIKDADPRVEDWLLMSSPLPQTIILGFYVYFVTSLGPKLMENRKPFELKKVMIT 70
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNFS+V S+Y+ YEF+MSGW + Y++RCD VD+S SP ALRMVR WL+ FSKFIEL+D
Sbjct: 71 YNFSIVLFSVYMFYEFIMSGWGTGYSFRCDIVDYSQSPTALRMVRTCWLYYFSKFIELLD 130
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
T+ FILRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA +N++VHVVMY YYGL
Sbjct: 131 TIFFILRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGL 190
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
ALGP Q YLWWKK++T++QL+QFVL+++H+SQ++F+ C YQFPV ++I YG +F
Sbjct: 191 CALGPDYQKYLWWKKYLTSLQLIQFVLITIHISQFFFMEDCKYQFPVFQYIIMSYGCIFL 250
Query: 874 ALFSNFWYQAYTKGKRLPRVL 936
LF +FWY+AYTKG+RLP+ +
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTV 271
>ref|NP_001092520.1| elongation of very long chain fatty acids protein 4 [Bos taurus].
Length = 314
Score = 217 bits (553), Expect = 2e-56
Identities = 115/277 (41%), Positives = 166/277 (59%), Gaps = 8/277 (2%)
Frame = +1
Query: 115 LAPAEPLAGMEAV-------VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS 273
L +EP + + AV V Y+ + D R++N+PLM SPL I Y+ FV
Sbjct: 3 LLDSEPGSVLNAVSTALNDTVEFYRWTLSITDKRVENWPLMQSPLPTLCISTLYLLFVW- 61
Query: 274 LGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA 453
LGP+ M +R+PFQ+R +++YNF +V L+L+I E LM + + Y++ C VD+S++
Sbjct: 62 LGPKWMKDREPFQMRLVLILYNFGMVLLNLFIFRELLMGSYNAGYSYICQTVDYSDNVHE 121
Query: 454 LRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMG 633
+R+ W + SK IE +DTV FILRKK+ QV+FLHV+HH + WW G+K GG
Sbjct: 122 VRIAAALWWYFISKGIEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQA 181
Query: 634 SFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPA 813
F A INS +HV+MY YYGL+A GP Q YLWWK+++T +QLVQF + H + +
Sbjct: 182 FFGAQINSFIHVIMYSYYGLAAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT-- 239
Query: 814 CDYQFPVIIH-LIWVYGTVFFALFSNFWYQAYTKGKR 921
D FP +H + VY F LF NF+ + Y + K+
Sbjct: 240 -DCPFPKWMHWALIVYAVSFIFLFLNFYVRTYKEPKK 275
>ref|NP_001040062.1| elongation of very long chain fatty acids protein 5 [Bos taurus].
Length = 299
Score = 178 bits (452), Expect = 1e-44
Identities = 99/249 (39%), Positives = 140/249 (56%), Gaps = 7/249 (2%)
Frame = +1
Query: 187 DPRIQNYPLMGS--PLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALS 360
D R++ + L+ + P L+ SIL + + LGP+ M R+PF RG +VVYN L LS
Sbjct: 20 DTRVEGWFLLDNYVPTLVCSILYLLIVW---LGPKYMKTRQPFSCRGILVVYNLGLTLLS 76
Query: 361 LYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKK 540
LY+ E + W Y + C S ++++RV W + FSK IE MDT FILRK
Sbjct: 77 LYMFCELVTGVWEGQYNFFCQGTR-SGGEADMKIIRVLWWYYFSKLIEFMDTFFFILRKN 135
Query: 541 DGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQP 720
+ Q+T LHV+HH+ + WW+ + P G F A +NS +HV+MY YYGLS++ P +P
Sbjct: 136 NHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSI-PSMRP 194
Query: 721 YLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV-----FFALFS 885
YLWWKK++T QL+QFVL + S C +P L W+Y + LF+
Sbjct: 195 YLWWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMISLITLFT 247
Query: 886 NFWYQAYTK 912
NF+ Q Y K
Sbjct: 248 NFYIQTYNK 256
>ref|NP_001076986.1| elongation of very long chain fatty acids protein 2 [Bos taurus].
Length = 294
Score = 172 bits (436), Expect = 7e-43
Identities = 101/276 (36%), Positives = 148/276 (53%), Gaps = 2/276 (0%)
Frame = +1
Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
E L + VN + + M D R++ + ++ S L S+ + Y+ + LG R M NR
Sbjct: 2 EHLKAFDDEVNAFLDNMFGPRDSRVRGWFMLDSYLPTFSLTVLYLLLIW-LGNRCMRNRP 60
Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWL 480
LRG + +YN + LS Y++ E ++S W Y +C D +++ EA +R+ RV W
Sbjct: 61 ALSLRGILTLYNLGITLLSAYMLAELILSSWEGGYNLQCQ--DLTSAGEADIRVARVLWW 118
Query: 481 FLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSS 660
+ FSK IE +DT+ F+LRKK QVTFLHV+HH+ + WW + P G F +NS
Sbjct: 119 YYFSKLIEFLDTIFFVLRKKTSQVTFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSF 178
Query: 661 VHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVII 840
+H++MY YYGLS P YLWWKK++T QLVQF+L H P C + +I
Sbjct: 179 IHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFLLTITHTMSAVVRP-CGFPLGCLI 236
Query: 841 HLIWVYGTVFFALFSNFWYQAYTKGKRLPRVLPQNG 948
Y LF NF+ Q Y K K + + + + G
Sbjct: 237 FQS-SYMMTLVILFLNFYIQTYRK-KPMKKAMEEAG 270
>ref|NP_001095625.1| elongation of very long chain fatty acids protein 6 [Bos taurus].
Length = 264
Score = 82.8 bits (203), Expect = 7e-16
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 11/238 (4%)
Frame = +1
Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
S L S +Y G R LM R F+LR +V+++ +L S+ Y+VY +
Sbjct: 31 SFLFSALYAAFVFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVYTVMTK 90
Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
G + CD F N P + A+ F+ SK EL DT+ ILRK+ ++ FLH +
Sbjct: 91 GLKHSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 141
Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
HH +VL +SW+ + GG G F M N SVH VMY YY L A G V++ + +
Sbjct: 142 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYSVHSVMYSYYALRAAGFRVSRKFAMFITLS 199
Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGK 918
IQ++ +++ V Q+ C F I +Y +F LF +F+++AY K
Sbjct: 200 QIIQMLIGCVINYLVFQWMQHDQCYSHFQNIFWSSLMY-LSYFVLFCHFFFEAYIGSK 256
>ref|NP_001179235.1| elongation of very long chain fatty acids protein 3 [Bos taurus].
Length = 270
Score = 80.9 bits (198), Expect = 3e-15
Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 9/264 (3%)
Frame = +1
Query: 169 EMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFS 345
E+ ++ P ++ Y TS ++ +Y +L +G M RK F L+G +++++F
Sbjct: 21 ELFRNMRPFLEEY-------WTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSFC 73
Query: 346 LVALSLYIVYEFLMSGWLSTYTWRCDP---VDFSNSPEALRMVRVAWLFLFSKFIELMDT 516
L S++ + G++ R P V F++ ++ + ++LF+ SK +EL DT
Sbjct: 74 LAVFSIFGTLR--VWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDT 131
Query: 517 VIFILRKKDGQVTFLHVFHHS-VLPW-SWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYG 690
ILRK+ + F+H +HHS VL + S+ + K+A GG + +N VH VMY YY
Sbjct: 132 AFIILRKR--PLIFVHWYHHSTVLVYSSFGYKNKVAAGG---WFMTMNFGVHAVMYTYYT 186
Query: 691 LSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW---VYG 861
L A V P W+ +T++Q++Q + + Y H W +Y
Sbjct: 187 LKA-AKVKSP-SWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYA 244
Query: 862 TVFFALFSNFWYQAYTKGKRLPRV 933
T +F LF+ F++Q Y +PR+
Sbjct: 245 T-YFVLFAKFFHQNYI----IPRI 263
>ref|XP_002698497.1| PREDICTED: elongation of very long chain fatty acids (FEN1/Elo2,
SUR4/Elo3, yeast)-like 3 [Bos taurus].
Length = 270
Score = 80.9 bits (198), Expect = 3e-15
Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 9/264 (3%)
Frame = +1
Query: 169 EMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFS 345
E+ ++ P ++ Y TS ++ +Y +L +G M RK F L+G +++++F
Sbjct: 21 ELFRNMRPFLEEY-------WTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSFC 73
Query: 346 LVALSLYIVYEFLMSGWLSTYTWRCDP---VDFSNSPEALRMVRVAWLFLFSKFIELMDT 516
L S++ + G++ R P V F++ ++ + ++LF+ SK +EL DT
Sbjct: 74 LAVFSIFGTLR--VWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDT 131
Query: 517 VIFILRKKDGQVTFLHVFHHS-VLPW-SWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYG 690
ILRK+ + F+H +HHS VL + S+ + K+A GG + +N VH VMY YY
Sbjct: 132 AFIILRKR--PLIFVHWYHHSTVLVYSSFGYKNKVAAGG---WFMTMNFGVHAVMYTYYT 186
Query: 691 LSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW---VYG 861
L A V P W+ +T++Q++Q + + Y H W +Y
Sbjct: 187 LKA-AKVKSP-SWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYA 244
Query: 862 TVFFALFSNFWYQAYTKGKRLPRV 933
T +F LF+ F++Q Y +PR+
Sbjct: 245 T-YFVLFAKFFHQNYI----IPRI 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,276,076
Number of extensions: 2222604
Number of successful extensions: 11095
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11005
Number of HSP's successfully gapped: 8
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012796
(1490 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539650.2| PREDICTED: similar to elongation of very long c... 555 e-158
Alignment gi|XP_851268.1| PREDICTED: similar to ELOVL family member 7, el... 364 e-100
Alignment gi|XP_539015.1| PREDICTED: similar to elongation of very long c... 212 7e-55
Alignment gi|XP_852962.1| PREDICTED: similar to homolog of yeast long cha... 181 1e-45
Alignment gi|XP_545341.2| PREDICTED: similar to elongation of very long c... 169 8e-42
Alignment gi|XP_545023.2| PREDICTED: similar to ELOVL family member 6, el... 78 2e-14
Alignment gi|XP_543985.2| PREDICTED: similar to elongation of very long c... 73 6e-13
>ref|XP_539650.2| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 1 [Canis familiaris].
Length = 278
Score = 555 bits (1430), Expect = e-158
Identities = 260/279 (93%), Positives = 275/279 (98%)
Frame = +1
Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
MEAVVNLYQEMMK+ADPR+Q YPLMGSPLLMTSILL+YVYFVLSLGPR+MANRKPFQLRG
Sbjct: 1 MEAVVNLYQEMMKYADPRLQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG 60
Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
FM+VYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVD+SNSPEALRMVRVAWLFLFSKFI
Sbjct: 61 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI 120
Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 180
Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+CDYQ+PVIIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCDYQYPVIIHLIWMYG 240
Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
T+FF LFSNFWY +YTKGKRLPRVL QNGAPGTA+VKAN
Sbjct: 241 TIFFVLFSNFWYHSYTKGKRLPRVL-QNGAPGTAKVKAN 278
>ref|XP_851268.1| PREDICTED: similar to ELOVL family member 7, elongation of long
chain fatty acids [Canis familiaris].
Length = 281
Score = 364 bits (934), Expect = e-100
Identities = 158/265 (59%), Positives = 214/265 (80%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V LY +K ADPR++++ LM SPL T IL YVYFV SLGP+LM NRKP++L+ M+
Sbjct: 11 VRLYDNWIKDADPRVEDWLLMSSPLPQTIILGLYVYFVTSLGPKLMENRKPYELKKAMIT 70
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNFS+V S+Y+ YEF+MSGW + Y++RC+ VD+S SP ALRM R WL+ FSKFIEL+D
Sbjct: 71 YNFSIVLFSVYMCYEFVMSGWGTGYSFRCEIVDYSQSPSALRMARTCWLYYFSKFIELLD 130
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA +N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGL 190
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
SALGP Q YLWWKK++T++QLVQF++V++H+ Q++F+ C YQFPV +++I YG +F
Sbjct: 191 SALGPAFQKYLWWKKYLTSLQLVQFIIVTIHIGQFFFMEDCKYQFPVFLYIIMSYGCIFL 250
Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNG 948
LF +FWY+AYTKG+RLP+ + +NG
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTV-KNG 274
>ref|XP_539015.1| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 4 [Canis familiaris].
Length = 314
Score = 212 bits (540), Expect = 7e-55
Identities = 110/282 (39%), Positives = 162/282 (57%), Gaps = 1/282 (0%)
Frame = +1
Query: 79 GPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYV 258
G SEP + + + V Y+ D R++N+PLM SPL I Y+
Sbjct: 2 GLLDSEPGSVLNVVST----ALNDTVEFYRWTWSITDKRVENWPLMQSPLPTLCISTLYL 57
Query: 259 YFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFS 438
FV LGP+ M +R+PFQ+R +++YNF +V L+L+I E M + + Y++ C VD+S
Sbjct: 58 LFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYS 116
Query: 439 NSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIA 618
++ +R+ W + SK +E +DTV FILRKK+ QV+FLHV+HH + WW G+K
Sbjct: 117 DNVNEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWV 176
Query: 619 PGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQY 798
GG F A +NS +HV+MY YYGL+A GP Q YLWWK+++T +QLVQF + H +
Sbjct: 177 AGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALS 236
Query: 799 YFVPACDYQFPVIIH-LIWVYGTVFFALFSNFWYQAYTKGKR 921
+ D FP +H + Y F LF NF+ + Y + K+
Sbjct: 237 LYT---DCPFPKWMHWALIAYAISFIFLFLNFYVRTYKEPKK 275
>ref|XP_852962.1| PREDICTED: similar to homolog of yeast long chain polyunsaturated
fatty acid elongatio [Canis familiaris].
Length = 471
Score = 181 bits (460), Expect = 1e-45
Identities = 111/320 (34%), Positives = 167/320 (52%), Gaps = 17/320 (5%)
Frame = +1
Query: 4 SPSGDRKSAQQMRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAG----------MEAV 153
+PS + A W G +L G A + R AP A +A
Sbjct: 124 APSSSHRGAP----WLPGPRSHVLLGSAGRGRPCSRRAAPPRAAAAPGRRGFKMENFDAS 179
Query: 154 VNLY-QEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFM 327
++ Y + ++ D R++ + L+ + + + + S +Y ++ LGP+ M NR+PF RG +
Sbjct: 180 LSTYFKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMKNRQPFSCRGIL 237
Query: 328 VVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIEL 507
VVYN L LSLY+ E + W Y + C + + ++++RV W + FSK IE
Sbjct: 238 VVYNLGLTLLSLYMFCELVTGVWEGRYNFFCQGTRSAGEAD-MKIIRVLWWYYFSKLIEF 296
Query: 508 MDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYY 687
MDT FILRK + Q+T LHV+HH+ + WW+ + P G F A +NS +HV+MY YY
Sbjct: 297 MDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYY 356
Query: 688 GLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV 867
GLS++ P +PYLWWKK++T QL+QFVL + S C +P L W+Y +
Sbjct: 357 GLSSV-PSMRPYLWWKKYITQGQLLQFVLTIIQTS-------CGVIWPCSFPLGWLYFQI 408
Query: 868 -----FFALFSNFWYQAYTK 912
ALF+NF+ Q Y K
Sbjct: 409 GYMISLIALFTNFYIQTYNK 428
>ref|XP_545341.2| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 2 [Canis familiaris].
Length = 328
Score = 169 bits (427), Expect = 8e-42
Identities = 98/265 (36%), Positives = 144/265 (54%), Gaps = 3/265 (1%)
Frame = +1
Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFV-LSLGPRLMANR 300
E L + +N + + M D R++ + ++ S L + L+ +Y + + LG + M NR
Sbjct: 34 EHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYL--PTFFLTVLYLLSIWLGNKYMKNR 91
Query: 301 KPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAW 477
LRG + +YN + LSLY++ E L+S W Y +C D +++ EA +R+ +V W
Sbjct: 92 HALSLRGILTLYNLGITLLSLYMLAELLLSSWEGGYNLQCQ--DLTSAGEADVRVAKVLW 149
Query: 478 LFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINS 657
+ FSK IE +DT+ F+LRKK Q+TFLHV+HH+ + WW + P G F +NS
Sbjct: 150 WYYFSKSIEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNS 209
Query: 658 SVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVI 837
+H++MY YYGLS P YLWWKK++T QLVQFVL H P C + +
Sbjct: 210 FIHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVKP-CGFPLGCL 267
Query: 838 IHLIWVYGTVFFALFSNFWYQAYTK 912
I Y LF NF+ Q Y K
Sbjct: 268 IFQS-SYMLTLVILFLNFYAQTYRK 291
>ref|XP_545023.2| PREDICTED: similar to ELOVL family member 6, elongation of long
chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)
[Canis familiaris].
Length = 265
Score = 78.2 bits (191), Expect = 2e-14
Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 11/239 (4%)
Frame = +1
Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
S L S +Y G R LM R F+LR +V+++ +L S+ Y+VY +
Sbjct: 33 SFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVYILMTK 92
Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
G + CD F N P + A+ F+ SK EL DT+ ILRK+ ++ FLH +
Sbjct: 93 GLKQSV---CDQ-SFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 143
Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAGFRVSRKFAMFITLS 201
Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGKR 921
Q++ +++ V + C F I +Y + LF +F+++AY GKR
Sbjct: 202 QITQMLMGCVINYLVFYWMQHDQCHSHFQNIFWSSLMY-LSYLVLFCHFFFEAYI-GKR 258
>ref|XP_543985.2| PREDICTED: similar to elongation of very long chain fatty acids
like 3 [Canis familiaris].
Length = 255
Score = 73.2 bits (178), Expect = 6e-13
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 10/243 (4%)
Frame = +1
Query: 208 PLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFSLVALSLY-IVYEF 381
PL P TS ++ VY +L +G M RK F L+ +++++F L S+ V +
Sbjct: 12 PLCLLPARATSFPIALVYLLLIFVGQNYMKARKGFNLQRPLILWSFCLAVFSILGAVRTW 71
Query: 382 LMSGWLSTYTWRCDPVDFS---NSPEALRMVRVAW--LFLFSKFIELMDTVIFILRKKDG 546
G L V FS N+P + W LFL SK IEL DT ILRK+
Sbjct: 72 GHMGALLLRRSLKQTVCFSIYINNP-----IVKFWSCLFLLSKIIELGDTAFIILRKR-- 124
Query: 547 QVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYL 726
+ F+H +HHS + +G K G F M N VH +MY+YY L A V P
Sbjct: 125 PLIFVHWYHHSTVLVYTSFGYKNKVPSGGWFMTM-NYGVHSIMYIYYTLRA-AKVKSP-T 181
Query: 727 WWKKHMTAIQLVQ-FVLVSLHVSQYYF--VPACDYQFPVIIHLIWVYGTVFFALFSNFWY 897
W +T++QL+Q F+ ++ + Y + C + +Y T +F LF++F++
Sbjct: 182 WLPMLITSLQLLQMFMGATISILTYIWRQEQGCHTTAEHFFWSLILYAT-YFILFAHFFH 240
Query: 898 QAY 906
Q Y
Sbjct: 241 QTY 243
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,185,508
Number of extensions: 2295152
Number of successful extensions: 11916
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 11771
Number of HSP's successfully gapped: 7
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012796
(1490 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161119.1| elongation of very long chain fatty acids pr... 651 0.0
Alignment gi|XP_003134038.1| PREDICTED: elongation of very long chain fat... 271 7e-73
Alignment gi|XP_003361684.1| PREDICTED: elongation of very long chain fat... 217 2e-56
Alignment gi|XP_003121444.1| PREDICTED: elongation of very long chain fat... 217 2e-56
Alignment gi|XP_003361081.1| PREDICTED: elongation of very long chain fat... 181 1e-45
Alignment gi|XP_001924876.2| PREDICTED: elongation of very long chain fat... 169 5e-42
Alignment gi|XP_003356572.1| PREDICTED: elongation of very long chain fat... 139 4e-33
Alignment gi|NP_001161106.1| elongation of very long chain fatty acids pr... 86 4e-17
>ref|NP_001161119.1| elongation of very long chain fatty acids protein 1 [Sus scrofa].
Length = 314
Score = 651 bits (1680), Expect = 0.0
Identities = 312/314 (99%), Positives = 313/314 (99%)
Frame = +1
Query: 37 MRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLM 216
MRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLM
Sbjct: 1 MRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLM 60
Query: 217 GSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGW 396
GSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGW
Sbjct: 61 GSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGW 120
Query: 397 LSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH 576
LSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH
Sbjct: 121 LSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH 180
Query: 577 SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQ 756
SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQ
Sbjct: 181 SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQ 240
Query: 757 LVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGKRLPRVL 936
LVQFVLVSLHVSQYYFVPACDYQ+PVIIHLIWVYGTVFFALFSNFWYQAYTKGKRLPRVL
Sbjct: 241 LVQFVLVSLHVSQYYFVPACDYQYPVIIHLIWVYGTVFFALFSNFWYQAYTKGKRLPRVL 300
Query: 937 PQNGAPGTARVKAN 978
QNGAPGTARVKAN
Sbjct: 301 QQNGAPGTARVKAN 314
>ref|XP_003134038.1| PREDICTED: elongation of very long chain fatty acids protein 7-like
[Sus scrofa].
Length = 240
Score = 271 bits (693), Expect = 7e-73
Identities = 129/265 (48%), Positives = 173/265 (65%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V LY +K ADPR++++ LM SPL T IL YVYFV SLGP+ M NRKPF+L+ M+
Sbjct: 11 VRLYDNWIKDADPRVEDWLLMSSPLPQTIILGLYVYFVTSLGPKFMENRKPFELKKAMIT 70
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V S+YI YEF+MSGW + Y++RC+ VD+S SP ALRMVR WL+ FSKFIEL+D
Sbjct: 71 YNFFIVLFSMYICYEFVMSGWGTGYSFRCEIVDYSQSPTALRMVRTCWLYYFSKFIELLD 130
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A G G
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGSQGR------------------- 171
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
VQFV+V++H+ Q++F+ C YQ+PV +++I YG +F
Sbjct: 172 ----------------------VQFVIVTIHIGQFFFMEDCKYQYPVFLYIIMSYGCIFL 209
Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNG 948
LF +FWY AYTKG+RLP+ + +NG
Sbjct: 210 LLFLHFWYCAYTKGQRLPKAV-KNG 233
>ref|XP_003361684.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
[Sus scrofa].
Length = 359
Score = 217 bits (552), Expect = 2e-56
Identities = 108/257 (42%), Positives = 156/257 (60%), Gaps = 1/257 (0%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V Y+ AD R++N+PLM SP I Y+ FV LGP+ M +R+PFQ+R +++
Sbjct: 68 VEFYRWTWSIADKRVENWPLMHSPWTTLCISTLYLLFVW-LGPKWMKDREPFQMRSVLII 126
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V L+L+I E M + + Y++ C VD+S++ +R+ W + SK IE +D
Sbjct: 127 YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSDNVHEVRIAAALWWYFVSKGIEYLD 186
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
TV FILRKK+ QV+FLHV+HH + WW G+K PGG F A +NS +HV+MY YYGL
Sbjct: 187 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMYSYYGL 246
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVF 870
+A GP Q YLWWK+++T +QLVQF + H + + D FP +H + Y F
Sbjct: 247 TAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISF 303
Query: 871 FALFSNFWYQAYTKGKR 921
LF NF+ + Y + K+
Sbjct: 304 IFLFLNFYVRTYNEPKK 320
>ref|XP_003121444.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
[Sus scrofa].
Length = 402
Score = 217 bits (552), Expect = 2e-56
Identities = 120/308 (38%), Positives = 172/308 (55%), Gaps = 1/308 (0%)
Frame = +1
Query: 1 LSPSGDRKSAQQMRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMK 180
L P ++A +RK R G PS P A R A +G A +
Sbjct: 70 LPPPPVPQAAASLRKSPRTRAGG--GARRPSAPRARPRDAGGGDWSGGGA--------RR 119
Query: 181 HADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALS 360
D R++N+PLM SP I Y+ FV LGP+ M +R+PFQ+R +++YNF +V L+
Sbjct: 120 QTDKRVENWPLMHSPWTTLCISTLYLLFVW-LGPKWMKDREPFQMRSVLIIYNFGMVLLN 178
Query: 361 LYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKK 540
L+I E M + + Y++ C VD+S++ +R+ W + SK IE +DTV FILRKK
Sbjct: 179 LFIFRELFMGSYNAGYSYICQSVDYSDNVHEVRIAAALWWYFVSKGIEYLDTVFFILRKK 238
Query: 541 DGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQP 720
+ QV+FLHV+HH + WW G+K PGG F A +NS +HV+MY YYGL+A GP Q
Sbjct: 239 NNQVSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQK 298
Query: 721 YLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVFFALFSNFWY 897
YLWWK+++T +QLVQF + H + + D FP +H + Y F LF NF+
Sbjct: 299 YLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISFIFLFLNFYV 355
Query: 898 QAYTKGKR 921
+ Y + K+
Sbjct: 356 RTYNEPKK 363
>ref|XP_003361081.1| PREDICTED: elongation of very long chain fatty acids protein 5 [Sus
scrofa].
Length = 299
Score = 181 bits (458), Expect = 1e-45
Identities = 103/249 (41%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
Frame = +1
Query: 187 DPRIQNYPLMGS--PLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALS 360
D R++ + L+ + P L+ SIL + + LGP+ M NR+PF RG +VVYN L LS
Sbjct: 20 DLRVKGWFLLDNYIPTLVCSILYLLIVW---LGPKYMKNRQPFSCRGILVVYNLGLTLLS 76
Query: 361 LYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKK 540
LY+ YE + W Y + C S ++++RV W + FSK IE MDT FILRK
Sbjct: 77 LYMFYELVTGVWEGKYNFFCQGTR-SGGEADMKIIRVLWWYYFSKLIEFMDTFFFILRKN 135
Query: 541 DGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQP 720
+ Q+T LHV+HH+ + WW+ + P G F A +NS +HV+MY YYGLS++ P +P
Sbjct: 136 NHQITVLHVYHHATMLNIWWFVMNWVPCGHCYFGATLNSFIHVLMYSYYGLSSI-PSMRP 194
Query: 721 YLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV-----FFALFS 885
YLWWKK++T QL+QFVL + S P FP L W+Y + ALF+
Sbjct: 195 YLWWKKYITQGQLLQFVLTIIQTSFGVIWPCA---FP----LGWLYFQIGYMISLIALFT 247
Query: 886 NFWYQAYTK 912
NF+ Q Y K
Sbjct: 248 NFYIQTYNK 256
>ref|XP_001924876.2| PREDICTED: elongation of very long chain fatty acids protein 2-like
[Sus scrofa].
Length = 511
Score = 169 bits (427), Expect = 5e-42
Identities = 97/264 (36%), Positives = 140/264 (53%), Gaps = 2/264 (0%)
Frame = +1
Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
E L + +N + + M D R++ + ++ S L T +L + LG R M +R
Sbjct: 217 EHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDS-YLPTFVLTVLYLLSIWLGNRFMKSRP 275
Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWL 480
LRG + YN + LS Y++ E ++S W Y +C D +++ EA +R+ RV W
Sbjct: 276 ALSLRGLLTFYNLGITLLSAYMLAELILSSWEGGYNLQCQ--DLTSAGEADIRVARVLWW 333
Query: 481 FLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSS 660
+ FSK IE +DT+ F+LRKK Q+TFLHV+HH+ + WW + P G F +NS
Sbjct: 334 YYFSKLIEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSF 393
Query: 661 VHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVII 840
+H++MY YYGLS P YLWWK+++T QLVQFVL H P C + F +I
Sbjct: 394 IHILMYSYYGLSVF-PSMHKYLWWKRYLTQAQLVQFVLTITHTLSAVVRP-CGFPFGCLI 451
Query: 841 HLIWVYGTVFFALFSNFWYQAYTK 912
Y LF NF+ Q Y K
Sbjct: 452 FQS-SYMLTLVILFLNFYVQTYRK 474
>ref|XP_003356572.1| PREDICTED: elongation of very long chain fatty acids protein 2-like
[Sus scrofa].
Length = 242
Score = 139 bits (350), Expect = 4e-33
Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Frame = +1
Query: 370 VYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWLFLFSKFIELMDTVIFILRKKDG 546
+++ ++S W Y +C D +++ EA +R+ RV W + FSK IE +DT+ F+LRKK
Sbjct: 29 LWQLILSSWEGGYNLQCQ--DLTSAGEADIRVARVLWWYYFSKLIEFLDTIFFVLRKKTS 86
Query: 547 QVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYL 726
Q+TFLHV+HH+ + WW + P G F +NS +H++MY YYGLS P YL
Sbjct: 87 QITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVF-PSMHKYL 145
Query: 727 WWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAY 906
WWK+++T QLVQFVL H P C + F +I Y LF NF+ Q Y
Sbjct: 146 WWKRYLTQAQLVQFVLTITHTLSAVVRP-CGFPFGCLIFQS-SYMLTLVILFLNFYVQTY 203
Query: 907 TK 912
K
Sbjct: 204 RK 205
>ref|NP_001161106.1| elongation of very long chain fatty acids protein 3 [Sus scrofa].
Length = 270
Score = 86.3 bits (212), Expect = 4e-17
Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 12/258 (4%)
Frame = +1
Query: 169 EMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSL 348
E+ + P ++ Y P+++ +LL +V G + M +RK F L+G +++++F L
Sbjct: 21 ELFQDMRPFLEEYWATSFPIVLVYLLLIFV------GQKYMKSRKGFNLQGPLILWSFCL 74
Query: 349 VALSLY-------IVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIEL 507
S+ + L+ G L V F+NS + + + LF+ SK IEL
Sbjct: 75 TVFSILGAVRTWGFMVAVLLRGSLK------QTVCFTNSTDNPIIKFWSCLFVLSKIIEL 128
Query: 508 MDTVIFILRKKDGQVTFLHVFHHS--VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
DT ILRK+ + F+H +HHS +L S+ + K+A GG + +N VH +MY
Sbjct: 129 GDTAFIILRKR--PLIFVHWYHHSTVLLYSSFGYKDKVAAGG---WFMTMNYGVHAIMYT 183
Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVL---VSLHVSQYYFVPACDYQFPVIIHLIW 852
YY L A +P W+ +T++Q++Q L VS+ + C +
Sbjct: 184 YYTLRA--AKVKPPKWFPMFITSLQILQMFLGATVSILTYIWKQEQGCHTTTEQLFWSFM 241
Query: 853 VYGTVFFALFSNFWYQAY 906
+Y T +F LF+ F++Q Y
Sbjct: 242 LYMT-YFLLFAQFFHQNY 258
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,567,568
Number of extensions: 1441176
Number of successful extensions: 7489
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7392
Number of HSP's successfully gapped: 9
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012796
(1490 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034265.1| elongation of very long chain fatty acids pr... 541 e-154
Alignment gi|NP_062295.1| elongation of very long chain fatty acids prote... 541 e-154
Alignment gi|NP_001034264.1| elongation of very long chain fatty acids pr... 398 e-111
Alignment gi|NP_083277.3| elongation of very long chain fatty acids prote... 364 e-100
Alignment gi|NP_001139446.1| elongation of very long chain fatty acids pr... 209 3e-54
Alignment gi|NP_683743.2| elongation of very long chain fatty acids prote... 209 3e-54
Alignment gi|NP_599016.2| elongation of very long chain fatty acids prote... 179 7e-45
Alignment gi|NP_062296.1| elongation of very long chain fatty acids prote... 176 6e-44
Alignment gi|NP_031729.1| elongation of very long chain fatty acids prote... 74 4e-13
Alignment gi|NP_569717.1| elongation of very long chain fatty acids prote... 72 1e-12
>ref|NP_001034265.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
musculus].
Length = 279
Score = 541 bits (1394), Expect = e-154
Identities = 247/279 (88%), Positives = 269/279 (96%)
Frame = +1
Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
MEAVVNLY E+MKHADPRIQ+YPLMGSPLL+TSILL+YVYF+LSLGPR+MANRKPFQLRG
Sbjct: 1 MEAVVNLYHELMKHADPRIQSYPLMGSPLLITSILLTYVYFILSLGPRIMANRKPFQLRG 60
Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
FM+VYNFSLV LSLYIVYEFLMSGWLSTYTWRCDP+DFSNSPEALRMVRVAWLF+ SK I
Sbjct: 61 FMIVYNFSLVILSLYIVYEFLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVI 120
Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWG+KIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYL 180
Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+P+IIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYG 240
Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
T+FF LFSNFWY +YTKGKRLPR + QNGAP T +VKAN
Sbjct: 241 TIFFILFSNFWYHSYTKGKRLPRAVQQNGAPATTKVKAN 279
>ref|NP_062295.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
musculus].
Length = 279
Score = 541 bits (1394), Expect = e-154
Identities = 247/279 (88%), Positives = 269/279 (96%)
Frame = +1
Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
MEAVVNLY E+MKHADPRIQ+YPLMGSPLL+TSILL+YVYF+LSLGPR+MANRKPFQLRG
Sbjct: 1 MEAVVNLYHELMKHADPRIQSYPLMGSPLLITSILLTYVYFILSLGPRIMANRKPFQLRG 60
Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
FM+VYNFSLV LSLYIVYEFLMSGWLSTYTWRCDP+DFSNSPEALRMVRVAWLF+ SK I
Sbjct: 61 FMIVYNFSLVILSLYIVYEFLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVI 120
Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWG+KIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYL 180
Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+P+IIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYG 240
Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
T+FF LFSNFWY +YTKGKRLPR + QNGAP T +VKAN
Sbjct: 241 TIFFILFSNFWYHSYTKGKRLPRAVQQNGAPATTKVKAN 279
>ref|NP_001034264.1| elongation of very long chain fatty acids protein 1 isoform 2 [Mus
musculus].
Length = 202
Score = 398 bits (1023), Expect = e-111
Identities = 177/200 (88%), Positives = 192/200 (96%)
Frame = +1
Query: 379 FLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTF 558
FLMSGWLSTYTWRCDP+DFSNSPEALRMVRVAWLF+ SK IELMDTVIFILRKKDGQVTF
Sbjct: 3 FLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTF 62
Query: 559 LHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKK 738
LHVFHHSVLPWSWWWG+KIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKK
Sbjct: 63 LHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKK 122
Query: 739 HMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGK 918
HMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+P+IIHLIW+YGT+FF LFSNFWY +YTKGK
Sbjct: 123 HMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYTKGK 182
Query: 919 RLPRVLPQNGAPGTARVKAN 978
RLPR + QNGAP T +VKAN
Sbjct: 183 RLPRAVQQNGAPATTKVKAN 202
>ref|NP_083277.3| elongation of very long chain fatty acids protein 7 [Mus musculus].
Length = 281
Score = 364 bits (934), Expect = e-100
Identities = 159/265 (60%), Positives = 211/265 (79%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V Y +K ADPR+++Y LM SPL T IL YVYFV SLGP+LM NRKPF+L+ M+
Sbjct: 11 VRFYDNWIKDADPRVEDYLLMSSPLPQTIILGLYVYFVTSLGPKLMENRKPFELKKAMIT 70
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V S+Y+ YEF+MSGW + Y++RCD VD+S SP A+RMV WL+ FSKFIEL+D
Sbjct: 71 YNFFIVLFSVYMCYEFVMSGWGTGYSFRCDIVDYSQSPRAMRMVHTCWLYYFSKFIELLD 130
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA +N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGL 190
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
A+GP Q YLWWKKH+T++QLVQFVLV++H+ Q +F+ C+YQ+PV +++I YG +F
Sbjct: 191 CAMGPAYQKYLWWKKHLTSLQLVQFVLVTIHIGQIFFMEDCNYQYPVFLYIIMSYGCIFL 250
Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNG 948
LF +FWY+AYTKG+RLP+ L +NG
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTL-ENG 274
>ref|NP_001139446.1| elongation of very long chain fatty acids protein 4 [Mus musculus].
Length = 312
Score = 209 bits (533), Expect = 3e-54
Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 1/257 (0%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V Y+ AD R+ ++PLM SP SI Y+ FV LGP+ M +R+PFQ+R +++
Sbjct: 23 VEFYRWTWTIADKRVADWPLMQSPWPTISISTLYLLFVW-LGPKWMKDREPFQMRLVLII 81
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V L+L+I E M + + Y++ C VD+SN +R+ W + SK +E +D
Sbjct: 82 YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNDVNEVRIAGALWWYFVSKGVEYLD 141
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
TV FILRKK+ QV+FLHV+HH + WW G+K GG F A +NS +HV+MY YYGL
Sbjct: 142 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFIHVIMYSYYGL 201
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVF 870
+A GP Q YLWWK+++T +QLVQF + H + + D FP +H + Y F
Sbjct: 202 TAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISF 258
Query: 871 FALFSNFWYQAYTKGKR 921
LF NF+ + Y + K+
Sbjct: 259 IFLFLNFYTRTYNEPKQ 275
>ref|NP_683743.2| elongation of very long chain fatty acids protein 4 [Mus musculus].
Length = 312
Score = 209 bits (533), Expect = 3e-54
Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 1/257 (0%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V Y+ AD R+ ++PLM SP SI Y+ FV LGP+ M +R+PFQ+R +++
Sbjct: 23 VEFYRWTWTIADKRVADWPLMQSPWPTISISTLYLLFVW-LGPKWMKDREPFQMRLVLII 81
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V L+L+I E M + + Y++ C VD+SN +R+ W + SK +E +D
Sbjct: 82 YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNDVNEVRIAGALWWYFVSKGVEYLD 141
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
TV FILRKK+ QV+FLHV+HH + WW G+K GG F A +NS +HV+MY YYGL
Sbjct: 142 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFIHVIMYSYYGL 201
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVF 870
+A GP Q YLWWK+++T +QLVQF + H + + D FP +H + Y F
Sbjct: 202 TAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISF 258
Query: 871 FALFSNFWYQAYTKGKR 921
LF NF+ + Y + K+
Sbjct: 259 IFLFLNFYTRTYNEPKQ 275
>ref|NP_599016.2| elongation of very long chain fatty acids protein 5 [Mus musculus].
Length = 299
Score = 179 bits (453), Expect = 7e-45
Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 1/243 (0%)
Frame = +1
Query: 187 DPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFSLVALSL 363
D R++ + L+ + + + + S +Y ++ LGP+ M NR+PF RG + +YN L LSL
Sbjct: 20 DTRVKGWFLLDN--YIPTFVCSVIYLLIVWLGPKYMKNRQPFSCRGILQLYNLGLTLLSL 77
Query: 364 YIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKD 543
Y+ YE + W Y + C + + ++++RV W + FSK IE MDT FILRK +
Sbjct: 78 YMFYELVTGVWEGKYNFFCQGTRSAGESD-MKIIRVLWWYYFSKLIEFMDTFFFILRKNN 136
Query: 544 GQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPY 723
Q+T LHV+HH+ + WW+ + P G F A +NS +HV+MY YYGLS++ P +PY
Sbjct: 137 HQITVLHVYHHATMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSI-PSMRPY 195
Query: 724 LWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQA 903
LWWKK++T QLVQFVL + + F P C + + I Y ALF+NF+ Q
Sbjct: 196 LWWKKYITQGQLVQFVLTIIQTTCGVFWP-CSFPLGWLFFQIG-YMISLIALFTNFYIQT 253
Query: 904 YTK 912
Y K
Sbjct: 254 YNK 256
>ref|NP_062296.1| elongation of very long chain fatty acids protein 2 [Mus musculus].
Length = 292
Score = 176 bits (445), Expect = 6e-44
Identities = 102/288 (35%), Positives = 151/288 (52%), Gaps = 4/288 (1%)
Frame = +1
Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
E L + VN + + M D R++ + L+ S L + ++Y+ + LG + M NR
Sbjct: 2 EQLKAFDNEVNAFLDNMFGPRDSRVRGWFLLDSYLPTFILTITYLLSIW-LGNKYMKNRP 60
Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLF 483
LRG + +YN ++ LS Y++ E ++S W Y +C +D + + +R+ +V W +
Sbjct: 61 ALSLRGILTLYNLAITLLSAYMLVELILSSWEGGYNLQCQNLDSAGEGD-VRVAKVLWWY 119
Query: 484 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV 663
FSK +E +DT+ F+LRKK Q+TFLHV+HH+ + WW + P G F +NS +
Sbjct: 120 YFSKLVEFLDTIFFVLRKKTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFI 179
Query: 664 HVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH 843
H++MY YYGLS P YLWWKK++T QLVQFVL H P C + F +I
Sbjct: 180 HILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTLSAVVKP-CGFPFGCLIF 237
Query: 844 LIWVYGTVFFALFSNFWYQAYTK---GKRLPRVLPQNGAPGTARVKAN 978
Y LF NF+ Q Y K K L +NG P + AN
Sbjct: 238 QS-SYMMTLVILFLNFYIQTYRKKPVKKELQEKEVKNGFPKAHLIVAN 284
>ref|NP_031729.1| elongation of very long chain fatty acids protein 3 [Mus musculus].
Length = 271
Score = 73.6 bits (179), Expect = 4e-13
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 9/238 (3%)
Frame = +1
Query: 232 MTSILLSYVYFVLSL-GPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTY 408
++S L+ VY +L + G M RK F L+ +++++F L S I+ M +++T
Sbjct: 36 VSSFLIVVVYLLLIVVGQTYMRTRKSFSLQRPLILWSFFLAIFS--ILGTLRMWKFMATV 93
Query: 409 TWRC---DPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHS 579
+ V F+ + + ++LFL SK +EL DT ILRK+ + F+H +HHS
Sbjct: 94 MFTVGLKQTVCFAIYTDDAVVRFWSFLFLLSKVVELGDTAFIILRKR--PLIFVHWYHHS 151
Query: 580 --VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAI 753
+L S+ + K+ GG + +N VH VMY YY + A + P L +T++
Sbjct: 152 TVLLFTSFGYKNKVPSGG---WFMTMNFGVHSVMYTYYTMKA-AKLKHPNL-LPMVITSL 206
Query: 754 QLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW---VYGTVFFALFSNFWYQAYTKGK 918
Q++Q VL ++ Y H W +YGT +F LF++F+++AY + K
Sbjct: 207 QILQMVLGTIFGILNYIWRQEKGCHTTTEHFFWSFMLYGT-YFILFAHFFHRAYLRPK 263
>ref|NP_569717.1| elongation of very long chain fatty acids protein 6 [Mus musculus].
Length = 267
Score = 71.6 bits (174), Expect = 1e-12
Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 13/236 (5%)
Frame = +1
Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
S L S +Y G R LM R F+LR +V+++ +L S+ Y++Y +
Sbjct: 33 SFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMLYILMTK 92
Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
G + CD F N P + A+ F+ SK EL DT+ ILRK+ ++ FLH +
Sbjct: 93 GLKQSV---CDQ-SFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 143
Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAGFRVSRKFAMFITLS 201
Query: 745 TAIQLVQFVLVSLHVSQY--YFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAY 906
Q++ +++ V + + C F I +Y + LF +F+++AY
Sbjct: 202 QITQMLMGCVINYLVFNWMQHDNDQCYSHFQNIFWSSLMY-LSYLVLFCHFFFEAY 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,389,456
Number of extensions: 1823414
Number of successful extensions: 8293
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8208
Number of HSP's successfully gapped: 10
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012796
(1490 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_073732.1| elongation of very long chain fatty acids prote... 550 e-156
Alignment gi|NP_001098028.1| elongation of very long chain fatty acids pr... 359 3e-99
Alignment gi|NP_079206.2| elongation of very long chain fatty acids prote... 359 3e-99
Alignment gi|NP_073563.1| elongation of very long chain fatty acids prote... 216 6e-56
Alignment gi|NP_068586.1| elongation of very long chain fatty acids prote... 179 5e-45
Alignment gi|NP_060240.3| elongation of very long chain fatty acids prote... 168 1e-41
Alignment gi|NP_001229757.1| elongation of very long chain fatty acids pr... 166 7e-41
Alignment gi|NP_001229759.1| elongation of very long chain fatty acids pr... 109 8e-24
Alignment gi|NP_689523.1| elongation of very long chain fatty acids prote... 83 8e-16
Alignment gi|NP_001124193.1| elongation of very long chain fatty acids pr... 76 7e-14
>ref|NP_073732.1| elongation of very long chain fatty acids protein 1 [Homo sapiens].
Length = 279
Score = 550 bits (1416), Expect = e-156
Identities = 255/279 (91%), Positives = 271/279 (97%)
Frame = +1
Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
MEAVVNLYQE+MKHADPRIQ YPLMGSPLLMTSILL+YVYFVLSLGPR+MANRKPFQLRG
Sbjct: 1 MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG 60
Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
FM+VYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVD+SNSPEALRMVRVAWLFLFSKFI
Sbjct: 61 FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI 120
Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHV+MYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL 180
Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
YYGLSA GPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+ +C+YQ+PVIIHLIW+YG
Sbjct: 181 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG 240
Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
T+FF LFSNFWY +YTKGKRLPR L QNGAPG A+VKAN
Sbjct: 241 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN 279
>ref|NP_001098028.1| elongation of very long chain fatty acids protein 7 [Homo sapiens].
Length = 281
Score = 359 bits (922), Expect = 3e-99
Identities = 161/275 (58%), Positives = 214/275 (77%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V+LY +K ADPR++++ LM SPL T +L YVYFV SLGP+LM NRKPF+L+ M+
Sbjct: 11 VHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMIT 70
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V S+Y+ YEF+MSGW Y++RCD VD+S SP ALRM R WL+ FSKFIEL+D
Sbjct: 71 YNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA++N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGL 190
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
SALGP Q YLWWKK++T++QLVQFV+V++H+SQ++F+ C YQFPV +I Y +F
Sbjct: 191 SALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFL 250
Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
LF +FWY+AYTKG+RLP+ + GT + K N
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTVKN----GTCKNKDN 281
>ref|NP_079206.2| elongation of very long chain fatty acids protein 7 [Homo sapiens].
Length = 281
Score = 359 bits (922), Expect = 3e-99
Identities = 161/275 (58%), Positives = 214/275 (77%)
Frame = +1
Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
V+LY +K ADPR++++ LM SPL T +L YVYFV SLGP+LM NRKPF+L+ M+
Sbjct: 11 VHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMIT 70
Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
YNF +V S+Y+ YEF+MSGW Y++RCD VD+S SP ALRM R WL+ FSKFIEL+D
Sbjct: 71 YNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130
Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA++N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGL 190
Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
SALGP Q YLWWKK++T++QLVQFV+V++H+SQ++F+ C YQFPV +I Y +F
Sbjct: 191 SALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFL 250
Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
LF +FWY+AYTKG+RLP+ + GT + K N
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTVKN----GTCKNKDN 281
>ref|NP_073563.1| elongation of very long chain fatty acids protein 4 [Homo sapiens].
Length = 314
Score = 216 bits (549), Expect = 6e-56
Identities = 115/301 (38%), Positives = 169/301 (56%), Gaps = 1/301 (0%)
Frame = +1
Query: 79 GPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYV 258
G SEP + + + V Y+ AD R++N+PLM SP SI Y+
Sbjct: 2 GLLDSEPGSVLNVVST----ALNDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYL 57
Query: 259 YFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFS 438
FV LGP+ M +R+PFQ+R +++YNF +V L+L+I E M + + Y++ C VD+S
Sbjct: 58 LFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYS 116
Query: 439 NSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIA 618
N+ +R+ W + SK +E +DTV FILRKK+ QV+FLHV+HH + WW G+K
Sbjct: 117 NNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWV 176
Query: 619 PGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQY 798
GG F A +NS +HV+MY YYGL+A GP Q YLWWK+++T +QL+QF + H +
Sbjct: 177 AGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALS 236
Query: 799 YFVPACDYQFPVIIH-LIWVYGTVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKA 975
+ D FP +H + Y F LF NF+ + Y + K+ P+ G + A
Sbjct: 237 LYT---DCPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKK-----PKAGKTAMNGISA 288
Query: 976 N 978
N
Sbjct: 289 N 289
>ref|NP_068586.1| elongation of very long chain fatty acids protein 5 isoform 1 [Homo
sapiens].
Length = 299
Score = 179 bits (455), Expect = 5e-45
Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 6/256 (2%)
Frame = +1
Query: 163 YQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYN 339
++ ++ D R++ + L+ + + + + S +Y ++ LGP+ M N++PF RG +VVYN
Sbjct: 12 FKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYN 69
Query: 340 FSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTV 519
L LSLY+ E + W Y + C + + ++++RV W + FSK IE MDT
Sbjct: 70 LGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESD-MKIIRVLWWYYFSKLIEFMDTF 128
Query: 520 IFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSA 699
FILRK + Q+T LHV+HH+ + WW+ + P G F A +NS +HV+MY YYGLS+
Sbjct: 129 FFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSS 188
Query: 700 LGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV---- 867
+ P +PYLWWKK++T QL+QFVL + S C +P L W+Y +
Sbjct: 189 V-PSMRPYLWWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMI 240
Query: 868 -FFALFSNFWYQAYTK 912
ALF+NF+ Q Y K
Sbjct: 241 SLIALFTNFYIQTYNK 256
>ref|NP_060240.3| elongation of very long chain fatty acids protein 2 [Homo sapiens].
Length = 296
Score = 168 bits (425), Expect = 1e-41
Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 2/264 (0%)
Frame = +1
Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
E L + +N + + M D R++ + ++ S L + + Y+ + LG + M NR
Sbjct: 2 EHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYLPTFFLTVMYLLSIW-LGNKYMKNRP 60
Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWL 480
LRG + +YN + LS Y++ E ++S W Y +C D +++ EA +R+ +V W
Sbjct: 61 ALSLRGILTLYNLGITLLSAYMLAELILSTWEGGYNLQCQ--DLTSAGEADIRVAKVLWW 118
Query: 481 FLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSS 660
+ FSK +E +DT+ F+LRKK Q+TFLHV+HH+ + WW + P G F +NS
Sbjct: 119 YYFSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSF 178
Query: 661 VHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVII 840
+H++MY YYGLS P YLWWKK++T QLVQFVL H P C + F +I
Sbjct: 179 IHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVKP-CGFPFGCLI 236
Query: 841 HLIWVYGTVFFALFSNFWYQAYTK 912
Y LF NF+ Q Y K
Sbjct: 237 FQS-SYMLTLVILFLNFYVQTYRK 259
>ref|NP_001229757.1| elongation of very long chain fatty acids protein 5 isoform 2 [Homo
sapiens].
Length = 326
Score = 166 bits (419), Expect = 7e-41
Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 33/283 (11%)
Frame = +1
Query: 163 YQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYN 339
++ ++ D R++ + L+ + + + + S +Y ++ LGP+ M N++PF RG +VVYN
Sbjct: 12 FKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYN 69
Query: 340 FSLVALSLYIVYEF--------------------------LMSG-WLSTYTWRCDPVDFS 438
L LSLY+ E L++G W Y + C +
Sbjct: 70 LGLTLLSLYMFCESKREQPRRSACASRTDPSTQQQLPENRLVTGVWEGKYNFFCQGTRTA 129
Query: 439 NSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIA 618
+ ++++RV W + FSK IE MDT FILRK + Q+T LHV+HH+ + WW+ +
Sbjct: 130 GESD-MKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWV 188
Query: 619 PGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQY 798
P G F A +NS +HV+MY YYGLS++ P +PYLWWKK++T QL+QFVL + S
Sbjct: 189 PCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYLWWKKYITQGQLLQFVLTIIQTS-- 245
Query: 799 YFVPACDYQFPVIIHLIWVYGTV-----FFALFSNFWYQAYTK 912
C +P L W+Y + ALF+NF+ Q Y K
Sbjct: 246 -----CGVIWPCTFPLGWLYFQIGYMISLIALFTNFYIQTYNK 283
>ref|NP_001229759.1| elongation of very long chain fatty acids protein 5 isoform 3 [Homo
sapiens].
Length = 262
Score = 109 bits (272), Expect = 8e-24
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Frame = +1
Query: 163 YQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYN 339
++ ++ D R++ + L+ + + + + S +Y ++ LGP+ M N++PF RG +VVYN
Sbjct: 12 FKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYN 69
Query: 340 FSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTV 519
L LSLY+ E + W Y + C + + ++++RV W + FSK IE MDT
Sbjct: 70 LGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESD-MKIIRVLWWYYFSKLIEFMDTF 128
Query: 520 IFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGS 636
FILRK + Q+T LHV+HH+ + WW+ + P G S
Sbjct: 129 FFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSS 167
>ref|NP_689523.1| elongation of very long chain fatty acids protein 3 [Homo sapiens].
Length = 270
Score = 82.8 bits (203), Expect = 8e-16
Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 12/240 (5%)
Frame = +1
Query: 235 TSILLSYVYFVL-SLGPRLMANRKPFQLRGFMVVYNFSLVALSLY-------IVYEFLMS 390
TS ++ +Y VL ++G M RK F L+G +++++F L S+ I+ L++
Sbjct: 36 TSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGIMGTVLLT 95
Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
G L V F N + + +W+FL SK IEL DT ILRK+ + F+H +
Sbjct: 96 GGLK------QTVCFINFIDNSTVKFWSWVFLLSKVIELGDTAFIILRKR--PLIFIHWY 147
Query: 571 HHS--VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHM 744
HHS ++ S+ + K+ GG + +N VH +MY YY L A +P +
Sbjct: 148 HHSTVLVYTSFGYKNKVPAGG---WFVTMNFGVHAIMYTYYTLKAAN--VKPPKMLPMLI 202
Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW--VYGTVFFALFSNFWYQAYTKGK 918
T++Q++Q + ++ Y + HL W + +F LF++F+ Q Y + K
Sbjct: 203 TSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAHFFCQTYIRPK 262
>ref|NP_001124193.1| elongation of very long chain fatty acids protein 6 [Homo sapiens].
Length = 265
Score = 76.3 bits (186), Expect = 7e-14
Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 11/234 (4%)
Frame = +1
Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
S L S +Y G R LM R F+LR +V+++ +L S+ Y+VY +
Sbjct: 33 SFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVYILMTK 92
Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
G + CD F N P + A+ F+ SK EL DT+ ILRK+ ++ FLH +
Sbjct: 93 GLKQSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 143
Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAGFRVSRKFAMFITLS 201
Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAY 906
Q++ +V+ V + C F I +Y + LF +F+++AY
Sbjct: 202 QITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMY-LSYLVLFCHFFFEAY 254
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,518,005
Number of extensions: 2220300
Number of successful extensions: 11025
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10919
Number of HSP's successfully gapped: 11
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012796
(1490 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1354 0.0
Sscrofa_Chr14 70 4e-09
>Sscrofa_Chr06
|| Length = 157765593
Score = 1354 bits (683), Expect = 0.0
Identities = 708/714 (99%), Gaps = 2/714 (0%)
Strand = Plus / Plus
Query: 759 ggtccagttcgtgctggtgtccctgcacgtctcccagtactacttcgtgccggcctgcga 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340181 ggtccagttcgtgctggtgtccctgcacgtctcccagtactacttcgtgccggcctgcga 155340240
Query: 819 ctaccagttcccggtcatcatccacctcatctgggtgtacggcacggtcttcttcgcgct 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340241 ctaccagttcccggtcatcatccacctcatctgggtgtacggcacggtcttcttcgcgct 155340300
Query: 879 cttctccaacttctggtatcaggcgtacaccaagggcaagcggctgccccgcgtccttcc 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340301 cttctccaacttctggtatcaggcgtacaccaagggcaagcggctgccccgcgtccttcc 155340360
Query: 939 gcagaatggagctccagggaccgccagagtcaaggccaactgagacacacggccgagctg 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340361 gcagaatggagctccagggaccgccagagtcaaggccaactgagacacacggccgagctg 155340420
Query: 999 gacgcccacctaagtgcctcaggactgcacctcaggcagcatctgtcattgtccacccca 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340421 gacgcccacctaagtgcctcaggactgcacctcaggcagcatctgtcattgtccacccca 155340480
Query: 1059 gcgacacctgtggccaggacggagcaggggacaggcatccactccccacagctggtacac 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340481 gcgacacctgtggccaggacggagcaggggacaggcatccactccccacagctggtacac 155340540
Query: 1119 agggaccactgcttccgttcctcccccacgtcccccagccagccccagggatgtggctca 1178
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 155340541 agggaccactgcttccgttcct-ccccacgtctcccagccagccccagggatgtggctca 155340599
Query: 1179 tggccctcggccactccagagctggggaccgaaagggctggacacttcctcccccctccc 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340600 tggccctcggccactccagagctggggaccgaaagggctggacacttcctcccccctccc 155340659
Query: 1239 tgccttacacttgggagaggagcactcagggctggcccccgccagggcctcgtggccttt 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340660 tgccttacacttgggagaggagcactcagggctggcccccgccagggcctcgtggccttt 155340719
Query: 1299 ttcctcacactgaagggggcagcaataacctgtcactgcggacccaggctccttccatgt 1358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340720 ttcctcacactgaagagggcagcaataacctgtcactgcggacccaggctccttccatgt 155340779
Query: 1359 ccgccccacactgaagcaggagcttctcggccaaaggtcagggtgggt-gggggcctggg 1417
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 155340780 ccgccccacactgaagcaggagcttcttggccaaaggtcagggtgggtggggggcctggg 155340839
Query: 1418 catacagcctgtggaggctgattactccccgtgtcttcattaaagtgacngagg 1471
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 155340840 catacagcctgtggaggctgattactccccgtgtcttcattaaagtgacagagg 155340893
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 185 cagatcctcggatccagaactaccctctgatggggtcccccctgctaatgacctccatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155338988 cagatcctcggatccagaactaccctctgatggggtcccccctgctaatgacctccatcc 155339047
Query: 245 tcctaagctacgtgtacttcgttctctcacttgggcctcgcctcatggccaatcggaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339048 tcctaagctacgtgtacttcgttctctcacttgggcctcgcctcatggccaatcggaagc 155339107
Query: 305 ccttccagctccgaggcttcatggttgtctacaacttctcactggtggcactttccctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339108 ccttccagctccgaggcttcatggttgtctacaacttctcactggtggcactttccctct 155339167
Query: 365 acatcgtctatgag 378
||||||||||||||
Sbjct: 155339168 acatcgtctatgag 155339181
Score = 281 bits (142), Expect = 5e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 620 caggaggaatgggctctttccacgccatgataaactcctctgtgcacgtcgtcatgtacc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339885 caggaggaatgggctctttccacgccatgataaactcctctgtgcacgtcgtcatgtacc 155339944
Query: 680 tgtactacgggttgtccgccctgggccctgtggcccagccctacctttggtggaaaaagc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339945 tgtactacgggttgtccgccctgggccctgtggcccagccctacctttggtggaaaaagc 155340004
Query: 740 acatgacagccatccagctggt 761
||||||||||||||||||||||
Sbjct: 155340005 acatgacagccatccagctggt 155340026
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 517 gtgatctttattctccggaaaaaggacggacaggtgaccttcctccacgtcttccaccac 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339688 gtgatctttattctccggaaaaaggacggacaggtgaccttcctccacgtcttccaccac 155339747
Query: 577 tcggtgctcccctggagctggtggtggggcgtcaaaattgccccagg 623
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339748 tcggtgctcccctggagctggtggtggggcgtcaaaattgccccagg 155339794
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 377 agttcctgatgtcaggctggctgagtacctacacctggcgctgcgatccagtggactttt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339354 agttcctgatgtcaggctggctgagtacctacacctggcgctgcgatccagtggactttt 155339413
Query: 437 ccaacagcccggaggccctgagg 459
|||||||||||||||||||||||
Sbjct: 155339414 ccaacagcccggaggccctgagg 155339436
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 459 gatggttcgagtggcctggctcttcctcttctccaagttcattgagctgatggacacagt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339540 gatggttcgagtggcctggctcttcctcttctccaagttcattgagctgatggacacagt 155339599
Query: 519 ga 520
||
Sbjct: 155339600 ga 155339601
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 127 gaacccttagccgggatggaggctgtggtgaacttgtaccaggagatgatgaagcacgca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155338751 gaacccttagccgggatggaggctgtggtgaacttgtaccaggagatgatgaagcacgca 155338810
Query: 187 g 187
|
Sbjct: 155338811 g 155338811
>Sscrofa_Chr14
|| Length = 153851969
Score = 69.9 bits (35), Expect = 4e-09
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1375 caggagcttctcggccaaaggtcagggtgggtgggggcctgggcatacagcctgtggagg 1434
|||||||| || |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 30048456 caggagctacttggccaaaggtcagggtgggtggatccctgggactacagcctgtggagg 30048515
Query: 1435 ctg 1437
|||
Sbjct: 30048516 ctg 30048518
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,795,776
Number of extensions: 362
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 8
Length of query: 1490
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1469
Effective length of database: 2,808,413,156
Effective search space: 4125558926164
Effective search space used: 4125558926164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)