Animal-Genome cDNA 20110601C-012796


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012796
         (1490 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029875.1| elongation of very long chain fatty acids pr...   549   e-156
Alignment   gi|NP_001071510.1| elongation of very long chain fatty acids pr...   365   e-101
Alignment   gi|NP_001092520.1| elongation of very long chain fatty acids pr...   217   2e-56
Alignment   gi|NP_001040062.1| elongation of very long chain fatty acids pr...   178   1e-44
Alignment   gi|NP_001076986.1| elongation of very long chain fatty acids pr...   172   7e-43
Alignment   gi|NP_001095625.1| elongation of very long chain fatty acids pr...    83   7e-16
Alignment   gi|NP_001179235.1| elongation of very long chain fatty acids pr...    81   3e-15
Alignment   gi|XP_002698497.1| PREDICTED: elongation of very long chain fat...    81   3e-15

>ref|NP_001029875.1| elongation of very long chain fatty acids protein 1 [Bos taurus].
          Length = 279

 Score =  549 bits (1414), Expect = e-156
 Identities = 253/279 (90%), Positives = 272/279 (97%)
 Frame = +1

Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
           MEA+VNLYQEMMKHADPR+Q YPLM SPLLMTSILL+YVYFVLSLGPR+MANRKPFQLRG
Sbjct: 1   MEAIVNLYQEMMKHADPRVQGYPLMESPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG 60

Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
           FMVVYNFSLVALSLYIVYEFLMSGWLS+YTWRCDPVDFSN+PEALRMVRVAWLFLFSKFI
Sbjct: 61  FMVVYNFSLVALSLYIVYEFLMSGWLSSYTWRCDPVDFSNNPEALRMVRVAWLFLFSKFI 120

Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
           EL+DT+IF+LRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELIDTLIFVLRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 180

Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
           YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+PVIIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFLPSCNYQYPVIIHLIWMYG 240

Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
           T+FF LFSNFWYQ+YTKGKRLPRV  QNG PGT +VKAN
Sbjct: 241 TIFFVLFSNFWYQSYTKGKRLPRVSQQNGVPGTTKVKAN 279


>ref|NP_001071510.1| elongation of very long chain fatty acids protein 7 [Bos taurus].
          Length = 281

 Score =  365 bits (938), Expect = e-101
 Identities = 160/261 (61%), Positives = 211/261 (80%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V LY   +K ADPR++++ LM SPL  T IL  YVYFV SLGP+LM NRKPF+L+  M+ 
Sbjct: 11  VRLYDNWIKDADPRVEDWLLMSSPLPQTIILGFYVYFVTSLGPKLMENRKPFELKKVMIT 70

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNFS+V  S+Y+ YEF+MSGW + Y++RCD VD+S SP ALRMVR  WL+ FSKFIEL+D
Sbjct: 71  YNFSIVLFSVYMFYEFIMSGWGTGYSFRCDIVDYSQSPTALRMVRTCWLYYFSKFIELLD 130

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           T+ FILRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA +N++VHVVMY YYGL
Sbjct: 131 TIFFILRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGL 190

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
            ALGP  Q YLWWKK++T++QL+QFVL+++H+SQ++F+  C YQFPV  ++I  YG +F 
Sbjct: 191 CALGPDYQKYLWWKKYLTSLQLIQFVLITIHISQFFFMEDCKYQFPVFQYIIMSYGCIFL 250

Query: 874 ALFSNFWYQAYTKGKRLPRVL 936
            LF +FWY+AYTKG+RLP+ +
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTV 271


>ref|NP_001092520.1| elongation of very long chain fatty acids protein 4 [Bos taurus].
          Length = 314

 Score =  217 bits (553), Expect = 2e-56
 Identities = 115/277 (41%), Positives = 166/277 (59%), Gaps = 8/277 (2%)
 Frame = +1

Query: 115 LAPAEPLAGMEAV-------VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS 273
           L  +EP + + AV       V  Y+  +   D R++N+PLM SPL    I   Y+ FV  
Sbjct: 3   LLDSEPGSVLNAVSTALNDTVEFYRWTLSITDKRVENWPLMQSPLPTLCISTLYLLFVW- 61

Query: 274 LGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA 453
           LGP+ M +R+PFQ+R  +++YNF +V L+L+I  E LM  + + Y++ C  VD+S++   
Sbjct: 62  LGPKWMKDREPFQMRLVLILYNFGMVLLNLFIFRELLMGSYNAGYSYICQTVDYSDNVHE 121

Query: 454 LRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMG 633
           +R+    W +  SK IE +DTV FILRKK+ QV+FLHV+HH  +   WW G+K   GG  
Sbjct: 122 VRIAAALWWYFISKGIEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQA 181

Query: 634 SFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPA 813
            F A INS +HV+MY YYGL+A GP  Q YLWWK+++T +QLVQF +   H +   +   
Sbjct: 182 FFGAQINSFIHVIMYSYYGLAAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT-- 239

Query: 814 CDYQFPVIIH-LIWVYGTVFFALFSNFWYQAYTKGKR 921
            D  FP  +H  + VY   F  LF NF+ + Y + K+
Sbjct: 240 -DCPFPKWMHWALIVYAVSFIFLFLNFYVRTYKEPKK 275


>ref|NP_001040062.1| elongation of very long chain fatty acids protein 5 [Bos taurus].
          Length = 299

 Score =  178 bits (452), Expect = 1e-44
 Identities = 99/249 (39%), Positives = 140/249 (56%), Gaps = 7/249 (2%)
 Frame = +1

Query: 187 DPRIQNYPLMGS--PLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALS 360
           D R++ + L+ +  P L+ SIL   + +   LGP+ M  R+PF  RG +VVYN  L  LS
Sbjct: 20  DTRVEGWFLLDNYVPTLVCSILYLLIVW---LGPKYMKTRQPFSCRGILVVYNLGLTLLS 76

Query: 361 LYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKK 540
           LY+  E +   W   Y + C     S     ++++RV W + FSK IE MDT  FILRK 
Sbjct: 77  LYMFCELVTGVWEGQYNFFCQGTR-SGGEADMKIIRVLWWYYFSKLIEFMDTFFFILRKN 135

Query: 541 DGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQP 720
           + Q+T LHV+HH+ +   WW+ +   P G   F A +NS +HV+MY YYGLS++ P  +P
Sbjct: 136 NHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSI-PSMRP 194

Query: 721 YLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV-----FFALFS 885
           YLWWKK++T  QL+QFVL  +  S       C   +P    L W+Y  +        LF+
Sbjct: 195 YLWWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMISLITLFT 247

Query: 886 NFWYQAYTK 912
           NF+ Q Y K
Sbjct: 248 NFYIQTYNK 256


>ref|NP_001076986.1| elongation of very long chain fatty acids protein 2 [Bos taurus].
          Length = 294

 Score =  172 bits (436), Expect = 7e-43
 Identities = 101/276 (36%), Positives = 148/276 (53%), Gaps = 2/276 (0%)
 Frame = +1

Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
           E L   +  VN + + M    D R++ + ++ S L   S+ + Y+  +  LG R M NR 
Sbjct: 2   EHLKAFDDEVNAFLDNMFGPRDSRVRGWFMLDSYLPTFSLTVLYLLLIW-LGNRCMRNRP 60

Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWL 480
              LRG + +YN  +  LS Y++ E ++S W   Y  +C   D +++ EA +R+ RV W 
Sbjct: 61  ALSLRGILTLYNLGITLLSAYMLAELILSSWEGGYNLQCQ--DLTSAGEADIRVARVLWW 118

Query: 481 FLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSS 660
           + FSK IE +DT+ F+LRKK  QVTFLHV+HH+ +   WW  +   P G   F   +NS 
Sbjct: 119 YYFSKLIEFLDTIFFVLRKKTSQVTFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSF 178

Query: 661 VHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVII 840
           +H++MY YYGLS   P    YLWWKK++T  QLVQF+L   H       P C +    +I
Sbjct: 179 IHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFLLTITHTMSAVVRP-CGFPLGCLI 236

Query: 841 HLIWVYGTVFFALFSNFWYQAYTKGKRLPRVLPQNG 948
                Y      LF NF+ Q Y K K + + + + G
Sbjct: 237 FQS-SYMMTLVILFLNFYIQTYRK-KPMKKAMEEAG 270


>ref|NP_001095625.1| elongation of very long chain fatty acids protein 6 [Bos taurus].
          Length = 264

 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 11/238 (4%)
 Frame = +1

Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
           S L S +Y     G R LM  R  F+LR  +V+++ +L   S+        Y+VY  +  
Sbjct: 31  SFLFSALYAAFVFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVYTVMTK 90

Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
           G   +    CD   F N P +      A+ F+ SK  EL DT+  ILRK+  ++ FLH +
Sbjct: 91  GLKHSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 141

Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
           HH +VL +SW+    +  GG G F  M N SVH VMY YY L A G  V++ +  +    
Sbjct: 142 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYSVHSVMYSYYALRAAGFRVSRKFAMFITLS 199

Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGK 918
             IQ++   +++  V Q+     C   F  I     +Y   +F LF +F+++AY   K
Sbjct: 200 QIIQMLIGCVINYLVFQWMQHDQCYSHFQNIFWSSLMY-LSYFVLFCHFFFEAYIGSK 256


>ref|NP_001179235.1| elongation of very long chain fatty acids protein 3 [Bos taurus].
          Length = 270

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 9/264 (3%)
 Frame = +1

Query: 169 EMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFS 345
           E+ ++  P ++ Y         TS  ++ +Y +L  +G   M  RK F L+G +++++F 
Sbjct: 21  ELFRNMRPFLEEY-------WTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSFC 73

Query: 346 LVALSLYIVYEFLMSGWLSTYTWRCDP---VDFSNSPEALRMVRVAWLFLFSKFIELMDT 516
           L   S++      + G++     R  P   V F++  ++  +   ++LF+ SK +EL DT
Sbjct: 74  LAVFSIFGTLR--VWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDT 131

Query: 517 VIFILRKKDGQVTFLHVFHHS-VLPW-SWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYG 690
              ILRK+   + F+H +HHS VL + S+ +  K+A GG   +   +N  VH VMY YY 
Sbjct: 132 AFIILRKR--PLIFVHWYHHSTVLVYSSFGYKNKVAAGG---WFMTMNFGVHAVMYTYYT 186

Query: 691 LSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW---VYG 861
           L A   V  P  W+   +T++Q++Q  + +      Y             H  W   +Y 
Sbjct: 187 LKA-AKVKSP-SWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYA 244

Query: 862 TVFFALFSNFWYQAYTKGKRLPRV 933
           T +F LF+ F++Q Y     +PR+
Sbjct: 245 T-YFVLFAKFFHQNYI----IPRI 263


>ref|XP_002698497.1| PREDICTED: elongation of very long chain fatty acids (FEN1/Elo2,
           SUR4/Elo3, yeast)-like 3 [Bos taurus].
          Length = 270

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 9/264 (3%)
 Frame = +1

Query: 169 EMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFS 345
           E+ ++  P ++ Y         TS  ++ +Y +L  +G   M  RK F L+G +++++F 
Sbjct: 21  ELFRNMRPFLEEY-------WTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSFC 73

Query: 346 LVALSLYIVYEFLMSGWLSTYTWRCDP---VDFSNSPEALRMVRVAWLFLFSKFIELMDT 516
           L   S++      + G++     R  P   V F++  ++  +   ++LF+ SK +EL DT
Sbjct: 74  LAVFSIFGTLR--VWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDT 131

Query: 517 VIFILRKKDGQVTFLHVFHHS-VLPW-SWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYG 690
              ILRK+   + F+H +HHS VL + S+ +  K+A GG   +   +N  VH VMY YY 
Sbjct: 132 AFIILRKR--PLIFVHWYHHSTVLVYSSFGYKNKVAAGG---WFMTMNFGVHAVMYTYYT 186

Query: 691 LSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW---VYG 861
           L A   V  P  W+   +T++Q++Q  + +      Y             H  W   +Y 
Sbjct: 187 LKA-AKVKSP-SWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYA 244

Query: 862 TVFFALFSNFWYQAYTKGKRLPRV 933
           T +F LF+ F++Q Y     +PR+
Sbjct: 245 T-YFVLFAKFFHQNYI----IPRI 263


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,276,076
Number of extensions: 2222604
Number of successful extensions: 11095
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11005
Number of HSP's successfully gapped: 8
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012796
         (1490 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_539650.2| PREDICTED: similar to elongation of very long c...   555   e-158
Alignment   gi|XP_851268.1| PREDICTED: similar to ELOVL family member 7, el...   364   e-100
Alignment   gi|XP_539015.1| PREDICTED: similar to elongation of very long c...   212   7e-55
Alignment   gi|XP_852962.1| PREDICTED: similar to homolog of yeast long cha...   181   1e-45
Alignment   gi|XP_545341.2| PREDICTED: similar to elongation of very long c...   169   8e-42
Alignment   gi|XP_545023.2| PREDICTED: similar to ELOVL family member 6, el...    78   2e-14
Alignment   gi|XP_543985.2| PREDICTED: similar to elongation of very long c...    73   6e-13

>ref|XP_539650.2| PREDICTED: similar to elongation of very long chain fatty acids
           (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 [Canis familiaris].
          Length = 278

 Score =  555 bits (1430), Expect = e-158
 Identities = 260/279 (93%), Positives = 275/279 (98%)
 Frame = +1

Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
           MEAVVNLYQEMMK+ADPR+Q YPLMGSPLLMTSILL+YVYFVLSLGPR+MANRKPFQLRG
Sbjct: 1   MEAVVNLYQEMMKYADPRLQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG 60

Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
           FM+VYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVD+SNSPEALRMVRVAWLFLFSKFI
Sbjct: 61  FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI 120

Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
           ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 180

Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
           YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+CDYQ+PVIIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCDYQYPVIIHLIWMYG 240

Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
           T+FF LFSNFWY +YTKGKRLPRVL QNGAPGTA+VKAN
Sbjct: 241 TIFFVLFSNFWYHSYTKGKRLPRVL-QNGAPGTAKVKAN 278


>ref|XP_851268.1| PREDICTED: similar to ELOVL family member 7, elongation of long
           chain fatty acids [Canis familiaris].
          Length = 281

 Score =  364 bits (934), Expect = e-100
 Identities = 158/265 (59%), Positives = 214/265 (80%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V LY   +K ADPR++++ LM SPL  T IL  YVYFV SLGP+LM NRKP++L+  M+ 
Sbjct: 11  VRLYDNWIKDADPRVEDWLLMSSPLPQTIILGLYVYFVTSLGPKLMENRKPYELKKAMIT 70

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNFS+V  S+Y+ YEF+MSGW + Y++RC+ VD+S SP ALRM R  WL+ FSKFIEL+D
Sbjct: 71  YNFSIVLFSVYMCYEFVMSGWGTGYSFRCEIVDYSQSPSALRMARTCWLYYFSKFIELLD 130

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA +N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGL 190

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
           SALGP  Q YLWWKK++T++QLVQF++V++H+ Q++F+  C YQFPV +++I  YG +F 
Sbjct: 191 SALGPAFQKYLWWKKYLTSLQLVQFIIVTIHIGQFFFMEDCKYQFPVFLYIIMSYGCIFL 250

Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNG 948
            LF +FWY+AYTKG+RLP+ + +NG
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTV-KNG 274


>ref|XP_539015.1| PREDICTED: similar to elongation of very long chain fatty acids
           (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 [Canis familiaris].
          Length = 314

 Score =  212 bits (540), Expect = 7e-55
 Identities = 110/282 (39%), Positives = 162/282 (57%), Gaps = 1/282 (0%)
 Frame = +1

Query: 79  GPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYV 258
           G   SEP +   +        +   V  Y+      D R++N+PLM SPL    I   Y+
Sbjct: 2   GLLDSEPGSVLNVVST----ALNDTVEFYRWTWSITDKRVENWPLMQSPLPTLCISTLYL 57

Query: 259 YFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFS 438
            FV  LGP+ M +R+PFQ+R  +++YNF +V L+L+I  E  M  + + Y++ C  VD+S
Sbjct: 58  LFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYS 116

Query: 439 NSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIA 618
           ++   +R+    W +  SK +E +DTV FILRKK+ QV+FLHV+HH  +   WW G+K  
Sbjct: 117 DNVNEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWV 176

Query: 619 PGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQY 798
            GG   F A +NS +HV+MY YYGL+A GP  Q YLWWK+++T +QLVQF +   H +  
Sbjct: 177 AGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALS 236

Query: 799 YFVPACDYQFPVIIH-LIWVYGTVFFALFSNFWYQAYTKGKR 921
            +    D  FP  +H  +  Y   F  LF NF+ + Y + K+
Sbjct: 237 LYT---DCPFPKWMHWALIAYAISFIFLFLNFYVRTYKEPKK 275


>ref|XP_852962.1| PREDICTED: similar to homolog of yeast long chain polyunsaturated
            fatty acid elongatio [Canis familiaris].
          Length = 471

 Score =  181 bits (460), Expect = 1e-45
 Identities = 111/320 (34%), Positives = 167/320 (52%), Gaps = 17/320 (5%)
 Frame = +1

Query: 4    SPSGDRKSAQQMRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAG----------MEAV 153
            +PS   + A     W  G    +L G A      + R AP    A            +A 
Sbjct: 124  APSSSHRGAP----WLPGPRSHVLLGSAGRGRPCSRRAAPPRAAAAPGRRGFKMENFDAS 179

Query: 154  VNLY-QEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFM 327
            ++ Y + ++   D R++ + L+ +   + + + S +Y ++  LGP+ M NR+PF  RG +
Sbjct: 180  LSTYFKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMKNRQPFSCRGIL 237

Query: 328  VVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIEL 507
            VVYN  L  LSLY+  E +   W   Y + C     +   + ++++RV W + FSK IE 
Sbjct: 238  VVYNLGLTLLSLYMFCELVTGVWEGRYNFFCQGTRSAGEAD-MKIIRVLWWYYFSKLIEF 296

Query: 508  MDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYY 687
            MDT  FILRK + Q+T LHV+HH+ +   WW+ +   P G   F A +NS +HV+MY YY
Sbjct: 297  MDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYY 356

Query: 688  GLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV 867
            GLS++ P  +PYLWWKK++T  QL+QFVL  +  S       C   +P    L W+Y  +
Sbjct: 357  GLSSV-PSMRPYLWWKKYITQGQLLQFVLTIIQTS-------CGVIWPCSFPLGWLYFQI 408

Query: 868  -----FFALFSNFWYQAYTK 912
                   ALF+NF+ Q Y K
Sbjct: 409  GYMISLIALFTNFYIQTYNK 428


>ref|XP_545341.2| PREDICTED: similar to elongation of very long chain fatty acids
           (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 [Canis familiaris].
          Length = 328

 Score =  169 bits (427), Expect = 8e-42
 Identities = 98/265 (36%), Positives = 144/265 (54%), Gaps = 3/265 (1%)
 Frame = +1

Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFV-LSLGPRLMANR 300
           E L   +  +N + + M    D R++ + ++ S L   +  L+ +Y + + LG + M NR
Sbjct: 34  EHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYL--PTFFLTVLYLLSIWLGNKYMKNR 91

Query: 301 KPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAW 477
               LRG + +YN  +  LSLY++ E L+S W   Y  +C   D +++ EA +R+ +V W
Sbjct: 92  HALSLRGILTLYNLGITLLSLYMLAELLLSSWEGGYNLQCQ--DLTSAGEADVRVAKVLW 149

Query: 478 LFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINS 657
            + FSK IE +DT+ F+LRKK  Q+TFLHV+HH+ +   WW  +   P G   F   +NS
Sbjct: 150 WYYFSKSIEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNS 209

Query: 658 SVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVI 837
            +H++MY YYGLS   P    YLWWKK++T  QLVQFVL   H       P C +    +
Sbjct: 210 FIHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVKP-CGFPLGCL 267

Query: 838 IHLIWVYGTVFFALFSNFWYQAYTK 912
           I     Y      LF NF+ Q Y K
Sbjct: 268 IFQS-SYMLTLVILFLNFYAQTYRK 291


>ref|XP_545023.2| PREDICTED: similar to ELOVL family member 6, elongation of long
           chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)
           [Canis familiaris].
          Length = 265

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 11/239 (4%)
 Frame = +1

Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
           S L S +Y     G R LM  R  F+LR  +V+++ +L   S+        Y+VY  +  
Sbjct: 33  SFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVYILMTK 92

Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
           G   +    CD   F N P +      A+ F+ SK  EL DT+  ILRK+  ++ FLH +
Sbjct: 93  GLKQSV---CDQ-SFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 143

Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
           HH +VL +SW+    +  GG G F  M N  VH VMY YY L A G  V++ +  +    
Sbjct: 144 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAGFRVSRKFAMFITLS 201

Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGKR 921
              Q++   +++  V  +     C   F  I     +Y   +  LF +F+++AY  GKR
Sbjct: 202 QITQMLMGCVINYLVFYWMQHDQCHSHFQNIFWSSLMY-LSYLVLFCHFFFEAYI-GKR 258


>ref|XP_543985.2| PREDICTED: similar to elongation of very long chain fatty acids
           like 3 [Canis familiaris].
          Length = 255

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 10/243 (4%)
 Frame = +1

Query: 208 PLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFSLVALSLY-IVYEF 381
           PL   P   TS  ++ VY +L  +G   M  RK F L+  +++++F L   S+   V  +
Sbjct: 12  PLCLLPARATSFPIALVYLLLIFVGQNYMKARKGFNLQRPLILWSFCLAVFSILGAVRTW 71

Query: 382 LMSGWLSTYTWRCDPVDFS---NSPEALRMVRVAW--LFLFSKFIELMDTVIFILRKKDG 546
              G L         V FS   N+P     +   W  LFL SK IEL DT   ILRK+  
Sbjct: 72  GHMGALLLRRSLKQTVCFSIYINNP-----IVKFWSCLFLLSKIIELGDTAFIILRKR-- 124

Query: 547 QVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYL 726
            + F+H +HHS +     +G K      G F  M N  VH +MY+YY L A   V  P  
Sbjct: 125 PLIFVHWYHHSTVLVYTSFGYKNKVPSGGWFMTM-NYGVHSIMYIYYTLRA-AKVKSP-T 181

Query: 727 WWKKHMTAIQLVQ-FVLVSLHVSQYYF--VPACDYQFPVIIHLIWVYGTVFFALFSNFWY 897
           W    +T++QL+Q F+  ++ +  Y +     C          + +Y T +F LF++F++
Sbjct: 182 WLPMLITSLQLLQMFMGATISILTYIWRQEQGCHTTAEHFFWSLILYAT-YFILFAHFFH 240

Query: 898 QAY 906
           Q Y
Sbjct: 241 QTY 243


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,185,508
Number of extensions: 2295152
Number of successful extensions: 11916
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 11771
Number of HSP's successfully gapped: 7
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012796
         (1490 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001161119.1| elongation of very long chain fatty acids pr...   651   0.0  
Alignment   gi|XP_003134038.1| PREDICTED: elongation of very long chain fat...   271   7e-73
Alignment   gi|XP_003361684.1| PREDICTED: elongation of very long chain fat...   217   2e-56
Alignment   gi|XP_003121444.1| PREDICTED: elongation of very long chain fat...   217   2e-56
Alignment   gi|XP_003361081.1| PREDICTED: elongation of very long chain fat...   181   1e-45
Alignment   gi|XP_001924876.2| PREDICTED: elongation of very long chain fat...   169   5e-42
Alignment   gi|XP_003356572.1| PREDICTED: elongation of very long chain fat...   139   4e-33
Alignment   gi|NP_001161106.1| elongation of very long chain fatty acids pr...    86   4e-17

>ref|NP_001161119.1| elongation of very long chain fatty acids protein 1 [Sus scrofa].
          Length = 314

 Score =  651 bits (1680), Expect = 0.0
 Identities = 312/314 (99%), Positives = 313/314 (99%)
 Frame = +1

Query: 37  MRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLM 216
           MRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLM
Sbjct: 1   MRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLM 60

Query: 217 GSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGW 396
           GSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGW
Sbjct: 61  GSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGW 120

Query: 397 LSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH 576
           LSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH
Sbjct: 121 LSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH 180

Query: 577 SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQ 756
           SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQ
Sbjct: 181 SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQ 240

Query: 757 LVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGKRLPRVL 936
           LVQFVLVSLHVSQYYFVPACDYQ+PVIIHLIWVYGTVFFALFSNFWYQAYTKGKRLPRVL
Sbjct: 241 LVQFVLVSLHVSQYYFVPACDYQYPVIIHLIWVYGTVFFALFSNFWYQAYTKGKRLPRVL 300

Query: 937 PQNGAPGTARVKAN 978
            QNGAPGTARVKAN
Sbjct: 301 QQNGAPGTARVKAN 314


>ref|XP_003134038.1| PREDICTED: elongation of very long chain fatty acids protein 7-like
           [Sus scrofa].
          Length = 240

 Score =  271 bits (693), Expect = 7e-73
 Identities = 129/265 (48%), Positives = 173/265 (65%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V LY   +K ADPR++++ LM SPL  T IL  YVYFV SLGP+ M NRKPF+L+  M+ 
Sbjct: 11  VRLYDNWIKDADPRVEDWLLMSSPLPQTIILGLYVYFVTSLGPKFMENRKPFELKKAMIT 70

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V  S+YI YEF+MSGW + Y++RC+ VD+S SP ALRMVR  WL+ FSKFIEL+D
Sbjct: 71  YNFFIVLFSMYICYEFVMSGWGTGYSFRCEIVDYSQSPTALRMVRTCWLYYFSKFIELLD 130

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A G  G                    
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGSQGR------------------- 171

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
                                 VQFV+V++H+ Q++F+  C YQ+PV +++I  YG +F 
Sbjct: 172 ----------------------VQFVIVTIHIGQFFFMEDCKYQYPVFLYIIMSYGCIFL 209

Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNG 948
            LF +FWY AYTKG+RLP+ + +NG
Sbjct: 210 LLFLHFWYCAYTKGQRLPKAV-KNG 233


>ref|XP_003361684.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
           [Sus scrofa].
          Length = 359

 Score =  217 bits (552), Expect = 2e-56
 Identities = 108/257 (42%), Positives = 156/257 (60%), Gaps = 1/257 (0%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V  Y+     AD R++N+PLM SP     I   Y+ FV  LGP+ M +R+PFQ+R  +++
Sbjct: 68  VEFYRWTWSIADKRVENWPLMHSPWTTLCISTLYLLFVW-LGPKWMKDREPFQMRSVLII 126

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V L+L+I  E  M  + + Y++ C  VD+S++   +R+    W +  SK IE +D
Sbjct: 127 YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSDNVHEVRIAAALWWYFVSKGIEYLD 186

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           TV FILRKK+ QV+FLHV+HH  +   WW G+K  PGG   F A +NS +HV+MY YYGL
Sbjct: 187 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMYSYYGL 246

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVF 870
           +A GP  Q YLWWK+++T +QLVQF +   H +   +    D  FP  +H  +  Y   F
Sbjct: 247 TAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISF 303

Query: 871 FALFSNFWYQAYTKGKR 921
             LF NF+ + Y + K+
Sbjct: 304 IFLFLNFYVRTYNEPKK 320


>ref|XP_003121444.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
           [Sus scrofa].
          Length = 402

 Score =  217 bits (552), Expect = 2e-56
 Identities = 120/308 (38%), Positives = 172/308 (55%), Gaps = 1/308 (0%)
 Frame = +1

Query: 1   LSPSGDRKSAQQMRKWQAGRPWGLLSGPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMK 180
           L P    ++A  +RK    R  G      PS P A  R A     +G  A         +
Sbjct: 70  LPPPPVPQAAASLRKSPRTRAGG--GARRPSAPRARPRDAGGGDWSGGGA--------RR 119

Query: 181 HADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALS 360
             D R++N+PLM SP     I   Y+ FV  LGP+ M +R+PFQ+R  +++YNF +V L+
Sbjct: 120 QTDKRVENWPLMHSPWTTLCISTLYLLFVW-LGPKWMKDREPFQMRSVLIIYNFGMVLLN 178

Query: 361 LYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKK 540
           L+I  E  M  + + Y++ C  VD+S++   +R+    W +  SK IE +DTV FILRKK
Sbjct: 179 LFIFRELFMGSYNAGYSYICQSVDYSDNVHEVRIAAALWWYFVSKGIEYLDTVFFILRKK 238

Query: 541 DGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQP 720
           + QV+FLHV+HH  +   WW G+K  PGG   F A +NS +HV+MY YYGL+A GP  Q 
Sbjct: 239 NNQVSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQK 298

Query: 721 YLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVFFALFSNFWY 897
           YLWWK+++T +QLVQF +   H +   +    D  FP  +H  +  Y   F  LF NF+ 
Sbjct: 299 YLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISFIFLFLNFYV 355

Query: 898 QAYTKGKR 921
           + Y + K+
Sbjct: 356 RTYNEPKK 363


>ref|XP_003361081.1| PREDICTED: elongation of very long chain fatty acids protein 5 [Sus
           scrofa].
          Length = 299

 Score =  181 bits (458), Expect = 1e-45
 Identities = 103/249 (41%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
 Frame = +1

Query: 187 DPRIQNYPLMGS--PLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALS 360
           D R++ + L+ +  P L+ SIL   + +   LGP+ M NR+PF  RG +VVYN  L  LS
Sbjct: 20  DLRVKGWFLLDNYIPTLVCSILYLLIVW---LGPKYMKNRQPFSCRGILVVYNLGLTLLS 76

Query: 361 LYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKK 540
           LY+ YE +   W   Y + C     S     ++++RV W + FSK IE MDT  FILRK 
Sbjct: 77  LYMFYELVTGVWEGKYNFFCQGTR-SGGEADMKIIRVLWWYYFSKLIEFMDTFFFILRKN 135

Query: 541 DGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQP 720
           + Q+T LHV+HH+ +   WW+ +   P G   F A +NS +HV+MY YYGLS++ P  +P
Sbjct: 136 NHQITVLHVYHHATMLNIWWFVMNWVPCGHCYFGATLNSFIHVLMYSYYGLSSI-PSMRP 194

Query: 721 YLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV-----FFALFS 885
           YLWWKK++T  QL+QFVL  +  S     P     FP    L W+Y  +       ALF+
Sbjct: 195 YLWWKKYITQGQLLQFVLTIIQTSFGVIWPCA---FP----LGWLYFQIGYMISLIALFT 247

Query: 886 NFWYQAYTK 912
           NF+ Q Y K
Sbjct: 248 NFYIQTYNK 256


>ref|XP_001924876.2| PREDICTED: elongation of very long chain fatty acids protein 2-like
           [Sus scrofa].
          Length = 511

 Score =  169 bits (427), Expect = 5e-42
 Identities = 97/264 (36%), Positives = 140/264 (53%), Gaps = 2/264 (0%)
 Frame = +1

Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
           E L   +  +N + + M    D R++ + ++ S  L T +L       + LG R M +R 
Sbjct: 217 EHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDS-YLPTFVLTVLYLLSIWLGNRFMKSRP 275

Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWL 480
              LRG +  YN  +  LS Y++ E ++S W   Y  +C   D +++ EA +R+ RV W 
Sbjct: 276 ALSLRGLLTFYNLGITLLSAYMLAELILSSWEGGYNLQCQ--DLTSAGEADIRVARVLWW 333

Query: 481 FLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSS 660
           + FSK IE +DT+ F+LRKK  Q+TFLHV+HH+ +   WW  +   P G   F   +NS 
Sbjct: 334 YYFSKLIEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSF 393

Query: 661 VHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVII 840
           +H++MY YYGLS   P    YLWWK+++T  QLVQFVL   H       P C + F  +I
Sbjct: 394 IHILMYSYYGLSVF-PSMHKYLWWKRYLTQAQLVQFVLTITHTLSAVVRP-CGFPFGCLI 451

Query: 841 HLIWVYGTVFFALFSNFWYQAYTK 912
                Y      LF NF+ Q Y K
Sbjct: 452 FQS-SYMLTLVILFLNFYVQTYRK 474


>ref|XP_003356572.1| PREDICTED: elongation of very long chain fatty acids protein 2-like
           [Sus scrofa].
          Length = 242

 Score =  139 bits (350), Expect = 4e-33
 Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 370 VYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWLFLFSKFIELMDTVIFILRKKDG 546
           +++ ++S W   Y  +C   D +++ EA +R+ RV W + FSK IE +DT+ F+LRKK  
Sbjct: 29  LWQLILSSWEGGYNLQCQ--DLTSAGEADIRVARVLWWYYFSKLIEFLDTIFFVLRKKTS 86

Query: 547 QVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYL 726
           Q+TFLHV+HH+ +   WW  +   P G   F   +NS +H++MY YYGLS   P    YL
Sbjct: 87  QITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVF-PSMHKYL 145

Query: 727 WWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAY 906
           WWK+++T  QLVQFVL   H       P C + F  +I     Y      LF NF+ Q Y
Sbjct: 146 WWKRYLTQAQLVQFVLTITHTLSAVVRP-CGFPFGCLIFQS-SYMLTLVILFLNFYVQTY 203

Query: 907 TK 912
            K
Sbjct: 204 RK 205


>ref|NP_001161106.1| elongation of very long chain fatty acids protein 3 [Sus scrofa].
          Length = 270

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 12/258 (4%)
 Frame = +1

Query: 169 EMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVVYNFSL 348
           E+ +   P ++ Y     P+++  +LL +V      G + M +RK F L+G +++++F L
Sbjct: 21  ELFQDMRPFLEEYWATSFPIVLVYLLLIFV------GQKYMKSRKGFNLQGPLILWSFCL 74

Query: 349 VALSLY-------IVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIEL 507
              S+         +   L+ G L         V F+NS +   +   + LF+ SK IEL
Sbjct: 75  TVFSILGAVRTWGFMVAVLLRGSLK------QTVCFTNSTDNPIIKFWSCLFVLSKIIEL 128

Query: 508 MDTVIFILRKKDGQVTFLHVFHHS--VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
            DT   ILRK+   + F+H +HHS  +L  S+ +  K+A GG   +   +N  VH +MY 
Sbjct: 129 GDTAFIILRKR--PLIFVHWYHHSTVLLYSSFGYKDKVAAGG---WFMTMNYGVHAIMYT 183

Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVL---VSLHVSQYYFVPACDYQFPVIIHLIW 852
           YY L A     +P  W+   +T++Q++Q  L   VS+    +     C      +     
Sbjct: 184 YYTLRA--AKVKPPKWFPMFITSLQILQMFLGATVSILTYIWKQEQGCHTTTEQLFWSFM 241

Query: 853 VYGTVFFALFSNFWYQAY 906
           +Y T +F LF+ F++Q Y
Sbjct: 242 LYMT-YFLLFAQFFHQNY 258


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,567,568
Number of extensions: 1441176
Number of successful extensions: 7489
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7392
Number of HSP's successfully gapped: 9
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012796
         (1490 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001034265.1| elongation of very long chain fatty acids pr...   541   e-154
Alignment   gi|NP_062295.1| elongation of very long chain fatty acids prote...   541   e-154
Alignment   gi|NP_001034264.1| elongation of very long chain fatty acids pr...   398   e-111
Alignment   gi|NP_083277.3| elongation of very long chain fatty acids prote...   364   e-100
Alignment   gi|NP_001139446.1| elongation of very long chain fatty acids pr...   209   3e-54
Alignment   gi|NP_683743.2| elongation of very long chain fatty acids prote...   209   3e-54
Alignment   gi|NP_599016.2| elongation of very long chain fatty acids prote...   179   7e-45
Alignment   gi|NP_062296.1| elongation of very long chain fatty acids prote...   176   6e-44
Alignment   gi|NP_031729.1| elongation of very long chain fatty acids prote...    74   4e-13
Alignment   gi|NP_569717.1| elongation of very long chain fatty acids prote...    72   1e-12

>ref|NP_001034265.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
           musculus].
          Length = 279

 Score =  541 bits (1394), Expect = e-154
 Identities = 247/279 (88%), Positives = 269/279 (96%)
 Frame = +1

Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
           MEAVVNLY E+MKHADPRIQ+YPLMGSPLL+TSILL+YVYF+LSLGPR+MANRKPFQLRG
Sbjct: 1   MEAVVNLYHELMKHADPRIQSYPLMGSPLLITSILLTYVYFILSLGPRIMANRKPFQLRG 60

Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
           FM+VYNFSLV LSLYIVYEFLMSGWLSTYTWRCDP+DFSNSPEALRMVRVAWLF+ SK I
Sbjct: 61  FMIVYNFSLVILSLYIVYEFLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVI 120

Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
           ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWG+KIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYL 180

Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
           YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+P+IIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYG 240

Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
           T+FF LFSNFWY +YTKGKRLPR + QNGAP T +VKAN
Sbjct: 241 TIFFILFSNFWYHSYTKGKRLPRAVQQNGAPATTKVKAN 279


>ref|NP_062295.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
           musculus].
          Length = 279

 Score =  541 bits (1394), Expect = e-154
 Identities = 247/279 (88%), Positives = 269/279 (96%)
 Frame = +1

Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
           MEAVVNLY E+MKHADPRIQ+YPLMGSPLL+TSILL+YVYF+LSLGPR+MANRKPFQLRG
Sbjct: 1   MEAVVNLYHELMKHADPRIQSYPLMGSPLLITSILLTYVYFILSLGPRIMANRKPFQLRG 60

Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
           FM+VYNFSLV LSLYIVYEFLMSGWLSTYTWRCDP+DFSNSPEALRMVRVAWLF+ SK I
Sbjct: 61  FMIVYNFSLVILSLYIVYEFLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVI 120

Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
           ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWG+KIAPGGMGSFHAMINSSVHVVMYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYL 180

Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
           YYGLSALGPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+P+IIHLIW+YG
Sbjct: 181 YYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYG 240

Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
           T+FF LFSNFWY +YTKGKRLPR + QNGAP T +VKAN
Sbjct: 241 TIFFILFSNFWYHSYTKGKRLPRAVQQNGAPATTKVKAN 279


>ref|NP_001034264.1| elongation of very long chain fatty acids protein 1 isoform 2 [Mus
           musculus].
          Length = 202

 Score =  398 bits (1023), Expect = e-111
 Identities = 177/200 (88%), Positives = 192/200 (96%)
 Frame = +1

Query: 379 FLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTF 558
           FLMSGWLSTYTWRCDP+DFSNSPEALRMVRVAWLF+ SK IELMDTVIFILRKKDGQVTF
Sbjct: 3   FLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTF 62

Query: 559 LHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKK 738
           LHVFHHSVLPWSWWWG+KIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKK
Sbjct: 63  LHVFHHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKK 122

Query: 739 HMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAYTKGK 918
           HMTAIQL+QFVLVSLH+SQYYF+P+C+YQ+P+IIHLIW+YGT+FF LFSNFWY +YTKGK
Sbjct: 123 HMTAIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYTKGK 182

Query: 919 RLPRVLPQNGAPGTARVKAN 978
           RLPR + QNGAP T +VKAN
Sbjct: 183 RLPRAVQQNGAPATTKVKAN 202


>ref|NP_083277.3| elongation of very long chain fatty acids protein 7 [Mus musculus].
          Length = 281

 Score =  364 bits (934), Expect = e-100
 Identities = 159/265 (60%), Positives = 211/265 (79%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V  Y   +K ADPR+++Y LM SPL  T IL  YVYFV SLGP+LM NRKPF+L+  M+ 
Sbjct: 11  VRFYDNWIKDADPRVEDYLLMSSPLPQTIILGLYVYFVTSLGPKLMENRKPFELKKAMIT 70

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V  S+Y+ YEF+MSGW + Y++RCD VD+S SP A+RMV   WL+ FSKFIEL+D
Sbjct: 71  YNFFIVLFSVYMCYEFVMSGWGTGYSFRCDIVDYSQSPRAMRMVHTCWLYYFSKFIELLD 130

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA +N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGL 190

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
            A+GP  Q YLWWKKH+T++QLVQFVLV++H+ Q +F+  C+YQ+PV +++I  YG +F 
Sbjct: 191 CAMGPAYQKYLWWKKHLTSLQLVQFVLVTIHIGQIFFMEDCNYQYPVFLYIIMSYGCIFL 250

Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNG 948
            LF +FWY+AYTKG+RLP+ L +NG
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTL-ENG 274


>ref|NP_001139446.1| elongation of very long chain fatty acids protein 4 [Mus musculus].
          Length = 312

 Score =  209 bits (533), Expect = 3e-54
 Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 1/257 (0%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V  Y+     AD R+ ++PLM SP    SI   Y+ FV  LGP+ M +R+PFQ+R  +++
Sbjct: 23  VEFYRWTWTIADKRVADWPLMQSPWPTISISTLYLLFVW-LGPKWMKDREPFQMRLVLII 81

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V L+L+I  E  M  + + Y++ C  VD+SN    +R+    W +  SK +E +D
Sbjct: 82  YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNDVNEVRIAGALWWYFVSKGVEYLD 141

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           TV FILRKK+ QV+FLHV+HH  +   WW G+K   GG   F A +NS +HV+MY YYGL
Sbjct: 142 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFIHVIMYSYYGL 201

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVF 870
           +A GP  Q YLWWK+++T +QLVQF +   H +   +    D  FP  +H  +  Y   F
Sbjct: 202 TAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISF 258

Query: 871 FALFSNFWYQAYTKGKR 921
             LF NF+ + Y + K+
Sbjct: 259 IFLFLNFYTRTYNEPKQ 275


>ref|NP_683743.2| elongation of very long chain fatty acids protein 4 [Mus musculus].
          Length = 312

 Score =  209 bits (533), Expect = 3e-54
 Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 1/257 (0%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V  Y+     AD R+ ++PLM SP    SI   Y+ FV  LGP+ M +R+PFQ+R  +++
Sbjct: 23  VEFYRWTWTIADKRVADWPLMQSPWPTISISTLYLLFVW-LGPKWMKDREPFQMRLVLII 81

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V L+L+I  E  M  + + Y++ C  VD+SN    +R+    W +  SK +E +D
Sbjct: 82  YNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNDVNEVRIAGALWWYFVSKGVEYLD 141

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           TV FILRKK+ QV+FLHV+HH  +   WW G+K   GG   F A +NS +HV+MY YYGL
Sbjct: 142 TVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFIHVIMYSYYGL 201

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH-LIWVYGTVF 870
           +A GP  Q YLWWK+++T +QLVQF +   H +   +    D  FP  +H  +  Y   F
Sbjct: 202 TAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYT---DCPFPKWMHWALIAYAISF 258

Query: 871 FALFSNFWYQAYTKGKR 921
             LF NF+ + Y + K+
Sbjct: 259 IFLFLNFYTRTYNEPKQ 275


>ref|NP_599016.2| elongation of very long chain fatty acids protein 5 [Mus musculus].
          Length = 299

 Score =  179 bits (453), Expect = 7e-45
 Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 1/243 (0%)
 Frame = +1

Query: 187 DPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYNFSLVALSL 363
           D R++ + L+ +   + + + S +Y ++  LGP+ M NR+PF  RG + +YN  L  LSL
Sbjct: 20  DTRVKGWFLLDN--YIPTFVCSVIYLLIVWLGPKYMKNRQPFSCRGILQLYNLGLTLLSL 77

Query: 364 YIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKD 543
           Y+ YE +   W   Y + C     +   + ++++RV W + FSK IE MDT  FILRK +
Sbjct: 78  YMFYELVTGVWEGKYNFFCQGTRSAGESD-MKIIRVLWWYYFSKLIEFMDTFFFILRKNN 136

Query: 544 GQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPY 723
            Q+T LHV+HH+ +   WW+ +   P G   F A +NS +HV+MY YYGLS++ P  +PY
Sbjct: 137 HQITVLHVYHHATMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSI-PSMRPY 195

Query: 724 LWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQA 903
           LWWKK++T  QLVQFVL  +  +   F P C +    +   I  Y     ALF+NF+ Q 
Sbjct: 196 LWWKKYITQGQLVQFVLTIIQTTCGVFWP-CSFPLGWLFFQIG-YMISLIALFTNFYIQT 253

Query: 904 YTK 912
           Y K
Sbjct: 254 YNK 256


>ref|NP_062296.1| elongation of very long chain fatty acids protein 2 [Mus musculus].
          Length = 292

 Score =  176 bits (445), Expect = 6e-44
 Identities = 102/288 (35%), Positives = 151/288 (52%), Gaps = 4/288 (1%)
 Frame = +1

Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
           E L   +  VN + + M    D R++ + L+ S L    + ++Y+  +  LG + M NR 
Sbjct: 2   EQLKAFDNEVNAFLDNMFGPRDSRVRGWFLLDSYLPTFILTITYLLSIW-LGNKYMKNRP 60

Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLF 483
              LRG + +YN ++  LS Y++ E ++S W   Y  +C  +D +   + +R+ +V W +
Sbjct: 61  ALSLRGILTLYNLAITLLSAYMLVELILSSWEGGYNLQCQNLDSAGEGD-VRVAKVLWWY 119

Query: 484 LFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSV 663
            FSK +E +DT+ F+LRKK  Q+TFLHV+HH+ +   WW  +   P G   F   +NS +
Sbjct: 120 YFSKLVEFLDTIFFVLRKKTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFI 179

Query: 664 HVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIH 843
           H++MY YYGLS   P    YLWWKK++T  QLVQFVL   H       P C + F  +I 
Sbjct: 180 HILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTLSAVVKP-CGFPFGCLIF 237

Query: 844 LIWVYGTVFFALFSNFWYQAYTK---GKRLPRVLPQNGAPGTARVKAN 978
               Y      LF NF+ Q Y K    K L     +NG P    + AN
Sbjct: 238 QS-SYMMTLVILFLNFYIQTYRKKPVKKELQEKEVKNGFPKAHLIVAN 284


>ref|NP_031729.1| elongation of very long chain fatty acids protein 3 [Mus musculus].
          Length = 271

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 9/238 (3%)
 Frame = +1

Query: 232 MTSILLSYVYFVLSL-GPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTY 408
           ++S L+  VY +L + G   M  RK F L+  +++++F L   S  I+    M  +++T 
Sbjct: 36  VSSFLIVVVYLLLIVVGQTYMRTRKSFSLQRPLILWSFFLAIFS--ILGTLRMWKFMATV 93

Query: 409 TWRC---DPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHS 579
            +       V F+   +   +   ++LFL SK +EL DT   ILRK+   + F+H +HHS
Sbjct: 94  MFTVGLKQTVCFAIYTDDAVVRFWSFLFLLSKVVELGDTAFIILRKR--PLIFVHWYHHS 151

Query: 580 --VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAI 753
             +L  S+ +  K+  GG   +   +N  VH VMY YY + A   +  P L     +T++
Sbjct: 152 TVLLFTSFGYKNKVPSGG---WFMTMNFGVHSVMYTYYTMKA-AKLKHPNL-LPMVITSL 206

Query: 754 QLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW---VYGTVFFALFSNFWYQAYTKGK 918
           Q++Q VL ++     Y             H  W   +YGT +F LF++F+++AY + K
Sbjct: 207 QILQMVLGTIFGILNYIWRQEKGCHTTTEHFFWSFMLYGT-YFILFAHFFHRAYLRPK 263


>ref|NP_569717.1| elongation of very long chain fatty acids protein 6 [Mus musculus].
          Length = 267

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 13/236 (5%)
 Frame = +1

Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
           S L S +Y     G R LM  R  F+LR  +V+++ +L   S+        Y++Y  +  
Sbjct: 33  SFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMLYILMTK 92

Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
           G   +    CD   F N P +      A+ F+ SK  EL DT+  ILRK+  ++ FLH +
Sbjct: 93  GLKQSV---CDQ-SFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 143

Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
           HH +VL +SW+    +  GG G F  M N  VH VMY YY L A G  V++ +  +    
Sbjct: 144 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAGFRVSRKFAMFITLS 201

Query: 745 TAIQLVQFVLVSLHVSQY--YFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAY 906
              Q++   +++  V  +  +    C   F  I     +Y   +  LF +F+++AY
Sbjct: 202 QITQMLMGCVINYLVFNWMQHDNDQCYSHFQNIFWSSLMY-LSYLVLFCHFFFEAY 256


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,389,456
Number of extensions: 1823414
Number of successful extensions: 8293
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8208
Number of HSP's successfully gapped: 10
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012796
         (1490 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_073732.1| elongation of very long chain fatty acids prote...   550   e-156
Alignment   gi|NP_001098028.1| elongation of very long chain fatty acids pr...   359   3e-99
Alignment   gi|NP_079206.2| elongation of very long chain fatty acids prote...   359   3e-99
Alignment   gi|NP_073563.1| elongation of very long chain fatty acids prote...   216   6e-56
Alignment   gi|NP_068586.1| elongation of very long chain fatty acids prote...   179   5e-45
Alignment   gi|NP_060240.3| elongation of very long chain fatty acids prote...   168   1e-41
Alignment   gi|NP_001229757.1| elongation of very long chain fatty acids pr...   166   7e-41
Alignment   gi|NP_001229759.1| elongation of very long chain fatty acids pr...   109   8e-24
Alignment   gi|NP_689523.1| elongation of very long chain fatty acids prote...    83   8e-16
Alignment   gi|NP_001124193.1| elongation of very long chain fatty acids pr...    76   7e-14

>ref|NP_073732.1| elongation of very long chain fatty acids protein 1 [Homo sapiens].
          Length = 279

 Score =  550 bits (1416), Expect = e-156
 Identities = 255/279 (91%), Positives = 271/279 (97%)
 Frame = +1

Query: 142 MEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRG 321
           MEAVVNLYQE+MKHADPRIQ YPLMGSPLLMTSILL+YVYFVLSLGPR+MANRKPFQLRG
Sbjct: 1   MEAVVNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRG 60

Query: 322 FMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFI 501
           FM+VYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVD+SNSPEALRMVRVAWLFLFSKFI
Sbjct: 61  FMIVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFI 120

Query: 502 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYL 681
           ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHV+MYL
Sbjct: 121 ELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYL 180

Query: 682 YYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYG 861
           YYGLSA GPVAQPYLWWKKHMTAIQL+QFVLVSLH+SQYYF+ +C+YQ+PVIIHLIW+YG
Sbjct: 181 YYGLSAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYG 240

Query: 862 TVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
           T+FF LFSNFWY +YTKGKRLPR L QNGAPG A+VKAN
Sbjct: 241 TIFFMLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN 279


>ref|NP_001098028.1| elongation of very long chain fatty acids protein 7 [Homo sapiens].
          Length = 281

 Score =  359 bits (922), Expect = 3e-99
 Identities = 161/275 (58%), Positives = 214/275 (77%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V+LY   +K ADPR++++ LM SPL  T +L  YVYFV SLGP+LM NRKPF+L+  M+ 
Sbjct: 11  VHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMIT 70

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V  S+Y+ YEF+MSGW   Y++RCD VD+S SP ALRM R  WL+ FSKFIEL+D
Sbjct: 71  YNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA++N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGL 190

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
           SALGP  Q YLWWKK++T++QLVQFV+V++H+SQ++F+  C YQFPV   +I  Y  +F 
Sbjct: 191 SALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFL 250

Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
            LF +FWY+AYTKG+RLP+ +      GT + K N
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTVKN----GTCKNKDN 281


>ref|NP_079206.2| elongation of very long chain fatty acids protein 7 [Homo sapiens].
          Length = 281

 Score =  359 bits (922), Expect = 3e-99
 Identities = 161/275 (58%), Positives = 214/275 (77%)
 Frame = +1

Query: 154 VNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRKPFQLRGFMVV 333
           V+LY   +K ADPR++++ LM SPL  T +L  YVYFV SLGP+LM NRKPF+L+  M+ 
Sbjct: 11  VHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMIT 70

Query: 334 YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMD 513
           YNF +V  S+Y+ YEF+MSGW   Y++RCD VD+S SP ALRM R  WL+ FSKFIEL+D
Sbjct: 71  YNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130

Query: 514 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGL 693
           T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA++N++VHVVMY YYGL
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGL 190

Query: 694 SALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFF 873
           SALGP  Q YLWWKK++T++QLVQFV+V++H+SQ++F+  C YQFPV   +I  Y  +F 
Sbjct: 191 SALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFL 250

Query: 874 ALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKAN 978
            LF +FWY+AYTKG+RLP+ +      GT + K N
Sbjct: 251 LLFLHFWYRAYTKGQRLPKTVKN----GTCKNKDN 281


>ref|NP_073563.1| elongation of very long chain fatty acids protein 4 [Homo sapiens].
          Length = 314

 Score =  216 bits (549), Expect = 6e-56
 Identities = 115/301 (38%), Positives = 169/301 (56%), Gaps = 1/301 (0%)
 Frame = +1

Query: 79  GPAPSEPSATARLAPAEPLAGMEAVVNLYQEMMKHADPRIQNYPLMGSPLLMTSILLSYV 258
           G   SEP +   +        +   V  Y+     AD R++N+PLM SP    SI   Y+
Sbjct: 2   GLLDSEPGSVLNVVST----ALNDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYL 57

Query: 259 YFVLSLGPRLMANRKPFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFS 438
            FV  LGP+ M +R+PFQ+R  +++YNF +V L+L+I  E  M  + + Y++ C  VD+S
Sbjct: 58  LFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYS 116

Query: 439 NSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIA 618
           N+   +R+    W +  SK +E +DTV FILRKK+ QV+FLHV+HH  +   WW G+K  
Sbjct: 117 NNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWV 176

Query: 619 PGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQY 798
            GG   F A +NS +HV+MY YYGL+A GP  Q YLWWK+++T +QL+QF +   H +  
Sbjct: 177 AGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALS 236

Query: 799 YFVPACDYQFPVIIH-LIWVYGTVFFALFSNFWYQAYTKGKRLPRVLPQNGAPGTARVKA 975
            +    D  FP  +H  +  Y   F  LF NF+ + Y + K+     P+ G      + A
Sbjct: 237 LYT---DCPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKK-----PKAGKTAMNGISA 288

Query: 976 N 978
           N
Sbjct: 289 N 289


>ref|NP_068586.1| elongation of very long chain fatty acids protein 5 isoform 1 [Homo
           sapiens].
          Length = 299

 Score =  179 bits (455), Expect = 5e-45
 Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 6/256 (2%)
 Frame = +1

Query: 163 YQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYN 339
           ++ ++   D R++ + L+ +   + + + S +Y ++  LGP+ M N++PF  RG +VVYN
Sbjct: 12  FKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYN 69

Query: 340 FSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTV 519
             L  LSLY+  E +   W   Y + C     +   + ++++RV W + FSK IE MDT 
Sbjct: 70  LGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESD-MKIIRVLWWYYFSKLIEFMDTF 128

Query: 520 IFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSA 699
            FILRK + Q+T LHV+HH+ +   WW+ +   P G   F A +NS +HV+MY YYGLS+
Sbjct: 129 FFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSS 188

Query: 700 LGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTV---- 867
           + P  +PYLWWKK++T  QL+QFVL  +  S       C   +P    L W+Y  +    
Sbjct: 189 V-PSMRPYLWWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMI 240

Query: 868 -FFALFSNFWYQAYTK 912
              ALF+NF+ Q Y K
Sbjct: 241 SLIALFTNFYIQTYNK 256


>ref|NP_060240.3| elongation of very long chain fatty acids protein 2 [Homo sapiens].
          Length = 296

 Score =  168 bits (425), Expect = 1e-41
 Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 2/264 (0%)
 Frame = +1

Query: 127 EPLAGMEAVVNLYQE-MMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLSLGPRLMANRK 303
           E L   +  +N + + M    D R++ + ++ S L    + + Y+  +  LG + M NR 
Sbjct: 2   EHLKAFDDEINAFLDNMFGPRDSRVRGWFMLDSYLPTFFLTVMYLLSIW-LGNKYMKNRP 60

Query: 304 PFQLRGFMVVYNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEA-LRMVRVAWL 480
              LRG + +YN  +  LS Y++ E ++S W   Y  +C   D +++ EA +R+ +V W 
Sbjct: 61  ALSLRGILTLYNLGITLLSAYMLAELILSTWEGGYNLQCQ--DLTSAGEADIRVAKVLWW 118

Query: 481 FLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSS 660
           + FSK +E +DT+ F+LRKK  Q+TFLHV+HH+ +   WW  +   P G   F   +NS 
Sbjct: 119 YYFSKSVEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSF 178

Query: 661 VHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQYYFVPACDYQFPVII 840
           +H++MY YYGLS   P    YLWWKK++T  QLVQFVL   H       P C + F  +I
Sbjct: 179 IHILMYSYYGLSVF-PSMHKYLWWKKYLTQAQLVQFVLTITHTMSAVVKP-CGFPFGCLI 236

Query: 841 HLIWVYGTVFFALFSNFWYQAYTK 912
                Y      LF NF+ Q Y K
Sbjct: 237 FQS-SYMLTLVILFLNFYVQTYRK 259


>ref|NP_001229757.1| elongation of very long chain fatty acids protein 5 isoform 2 [Homo
           sapiens].
          Length = 326

 Score =  166 bits (419), Expect = 7e-41
 Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 33/283 (11%)
 Frame = +1

Query: 163 YQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYN 339
           ++ ++   D R++ + L+ +   + + + S +Y ++  LGP+ M N++PF  RG +VVYN
Sbjct: 12  FKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYN 69

Query: 340 FSLVALSLYIVYEF--------------------------LMSG-WLSTYTWRCDPVDFS 438
             L  LSLY+  E                           L++G W   Y + C     +
Sbjct: 70  LGLTLLSLYMFCESKREQPRRSACASRTDPSTQQQLPENRLVTGVWEGKYNFFCQGTRTA 129

Query: 439 NSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIA 618
              + ++++RV W + FSK IE MDT  FILRK + Q+T LHV+HH+ +   WW+ +   
Sbjct: 130 GESD-MKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWV 188

Query: 619 PGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLVQFVLVSLHVSQY 798
           P G   F A +NS +HV+MY YYGLS++ P  +PYLWWKK++T  QL+QFVL  +  S  
Sbjct: 189 PCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYLWWKKYITQGQLLQFVLTIIQTS-- 245

Query: 799 YFVPACDYQFPVIIHLIWVYGTV-----FFALFSNFWYQAYTK 912
                C   +P    L W+Y  +       ALF+NF+ Q Y K
Sbjct: 246 -----CGVIWPCTFPLGWLYFQIGYMISLIALFTNFYIQTYNK 283


>ref|NP_001229759.1| elongation of very long chain fatty acids protein 5 isoform 3 [Homo
           sapiens].
          Length = 262

 Score =  109 bits (272), Expect = 8e-24
 Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
 Frame = +1

Query: 163 YQEMMKHADPRIQNYPLMGSPLLMTSILLSYVYFVLS-LGPRLMANRKPFQLRGFMVVYN 339
           ++ ++   D R++ + L+ +   + + + S +Y ++  LGP+ M N++PF  RG +VVYN
Sbjct: 12  FKALLGPRDTRVKGWFLLDN--YIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYN 69

Query: 340 FSLVALSLYIVYEFLMSGWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTV 519
             L  LSLY+  E +   W   Y + C     +   + ++++RV W + FSK IE MDT 
Sbjct: 70  LGLTLLSLYMFCELVTGVWEGKYNFFCQGTRTAGESD-MKIIRVLWWYYFSKLIEFMDTF 128

Query: 520 IFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGS 636
            FILRK + Q+T LHV+HH+ +   WW+ +   P G  S
Sbjct: 129 FFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSS 167


>ref|NP_689523.1| elongation of very long chain fatty acids protein 3 [Homo sapiens].
          Length = 270

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 12/240 (5%)
 Frame = +1

Query: 235 TSILLSYVYFVL-SLGPRLMANRKPFQLRGFMVVYNFSLVALSLY-------IVYEFLMS 390
           TS  ++ +Y VL ++G   M  RK F L+G +++++F L   S+        I+   L++
Sbjct: 36  TSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGIMGTVLLT 95

Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
           G L         V F N  +   +   +W+FL SK IEL DT   ILRK+   + F+H +
Sbjct: 96  GGLK------QTVCFINFIDNSTVKFWSWVFLLSKVIELGDTAFIILRKR--PLIFIHWY 147

Query: 571 HHS--VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHM 744
           HHS  ++  S+ +  K+  GG   +   +N  VH +MY YY L A     +P       +
Sbjct: 148 HHSTVLVYTSFGYKNKVPAGG---WFVTMNFGVHAIMYTYYTLKAAN--VKPPKMLPMLI 202

Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIW--VYGTVFFALFSNFWYQAYTKGK 918
           T++Q++Q  + ++     Y           + HL W  +    +F LF++F+ Q Y + K
Sbjct: 203 TSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAHFFCQTYIRPK 262


>ref|NP_001124193.1| elongation of very long chain fatty acids protein 6 [Homo sapiens].
          Length = 265

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 11/234 (4%)
 Frame = +1

Query: 238 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 390
           S L S +Y     G R LM  R  F+LR  +V+++ +L   S+        Y+VY  +  
Sbjct: 33  SFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVYILMTK 92

Query: 391 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 570
           G   +    CD   F N P +      A+ F+ SK  EL DT+  ILRK+  ++ FLH +
Sbjct: 93  GLKQSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 143

Query: 571 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 744
           HH +VL +SW+    +  GG G F  M N  VH VMY YY L A G  V++ +  +    
Sbjct: 144 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAGFRVSRKFAMFITLS 201

Query: 745 TAIQLVQFVLVSLHVSQYYFVPACDYQFPVIIHLIWVYGTVFFALFSNFWYQAY 906
              Q++   +V+  V  +     C   F  I     +Y   +  LF +F+++AY
Sbjct: 202 QITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMY-LSYLVLFCHFFFEAY 254


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,518,005
Number of extensions: 2220300
Number of successful extensions: 11025
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10919
Number of HSP's successfully gapped: 11
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012796
         (1490 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                        1354   0.0  
Sscrofa_Chr14                                                          70   4e-09

>Sscrofa_Chr06 
||          Length = 157765593

 Score = 1354 bits (683), Expect = 0.0
 Identities = 708/714 (99%), Gaps = 2/714 (0%)
 Strand = Plus / Plus

                                                                             
Query: 759       ggtccagttcgtgctggtgtccctgcacgtctcccagtactacttcgtgccggcctgcga 818
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340181 ggtccagttcgtgctggtgtccctgcacgtctcccagtactacttcgtgccggcctgcga 155340240

                                                                             
Query: 819       ctaccagttcccggtcatcatccacctcatctgggtgtacggcacggtcttcttcgcgct 878
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340241 ctaccagttcccggtcatcatccacctcatctgggtgtacggcacggtcttcttcgcgct 155340300

                                                                             
Query: 879       cttctccaacttctggtatcaggcgtacaccaagggcaagcggctgccccgcgtccttcc 938
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340301 cttctccaacttctggtatcaggcgtacaccaagggcaagcggctgccccgcgtccttcc 155340360

                                                                             
Query: 939       gcagaatggagctccagggaccgccagagtcaaggccaactgagacacacggccgagctg 998
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340361 gcagaatggagctccagggaccgccagagtcaaggccaactgagacacacggccgagctg 155340420

                                                                             
Query: 999       gacgcccacctaagtgcctcaggactgcacctcaggcagcatctgtcattgtccacccca 1058
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340421 gacgcccacctaagtgcctcaggactgcacctcaggcagcatctgtcattgtccacccca 155340480

                                                                             
Query: 1059      gcgacacctgtggccaggacggagcaggggacaggcatccactccccacagctggtacac 1118
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340481 gcgacacctgtggccaggacggagcaggggacaggcatccactccccacagctggtacac 155340540

                                                                             
Query: 1119      agggaccactgcttccgttcctcccccacgtcccccagccagccccagggatgtggctca 1178
                 |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 155340541 agggaccactgcttccgttcct-ccccacgtctcccagccagccccagggatgtggctca 155340599

                                                                             
Query: 1179      tggccctcggccactccagagctggggaccgaaagggctggacacttcctcccccctccc 1238
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340600 tggccctcggccactccagagctggggaccgaaagggctggacacttcctcccccctccc 155340659

                                                                             
Query: 1239      tgccttacacttgggagaggagcactcagggctggcccccgccagggcctcgtggccttt 1298
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340660 tgccttacacttgggagaggagcactcagggctggcccccgccagggcctcgtggccttt 155340719

                                                                             
Query: 1299      ttcctcacactgaagggggcagcaataacctgtcactgcggacccaggctccttccatgt 1358
                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155340720 ttcctcacactgaagagggcagcaataacctgtcactgcggacccaggctccttccatgt 155340779

                                                                             
Query: 1359      ccgccccacactgaagcaggagcttctcggccaaaggtcagggtgggt-gggggcctggg 1417
                 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 155340780 ccgccccacactgaagcaggagcttcttggccaaaggtcagggtgggtggggggcctggg 155340839

                                                                       
Query: 1418      catacagcctgtggaggctgattactccccgtgtcttcattaaagtgacngagg 1471
                 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 155340840 catacagcctgtggaggctgattactccccgtgtcttcattaaagtgacagagg 155340893



 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                             
Query: 185       cagatcctcggatccagaactaccctctgatggggtcccccctgctaatgacctccatcc 244
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155338988 cagatcctcggatccagaactaccctctgatggggtcccccctgctaatgacctccatcc 155339047

                                                                             
Query: 245       tcctaagctacgtgtacttcgttctctcacttgggcctcgcctcatggccaatcggaagc 304
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339048 tcctaagctacgtgtacttcgttctctcacttgggcctcgcctcatggccaatcggaagc 155339107

                                                                             
Query: 305       ccttccagctccgaggcttcatggttgtctacaacttctcactggtggcactttccctct 364
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339108 ccttccagctccgaggcttcatggttgtctacaacttctcactggtggcactttccctct 155339167

                               
Query: 365       acatcgtctatgag 378
                 ||||||||||||||
Sbjct: 155339168 acatcgtctatgag 155339181



 Score =  281 bits (142), Expect = 5e-73
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                             
Query: 620       caggaggaatgggctctttccacgccatgataaactcctctgtgcacgtcgtcatgtacc 679
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339885 caggaggaatgggctctttccacgccatgataaactcctctgtgcacgtcgtcatgtacc 155339944

                                                                             
Query: 680       tgtactacgggttgtccgccctgggccctgtggcccagccctacctttggtggaaaaagc 739
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339945 tgtactacgggttgtccgccctgggccctgtggcccagccctacctttggtggaaaaagc 155340004

                                       
Query: 740       acatgacagccatccagctggt 761
                 ||||||||||||||||||||||
Sbjct: 155340005 acatgacagccatccagctggt 155340026



 Score =  212 bits (107), Expect = 4e-52
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                             
Query: 517       gtgatctttattctccggaaaaaggacggacaggtgaccttcctccacgtcttccaccac 576
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339688 gtgatctttattctccggaaaaaggacggacaggtgaccttcctccacgtcttccaccac 155339747

                                                                
Query: 577       tcggtgctcccctggagctggtggtggggcgtcaaaattgccccagg 623
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339748 tcggtgctcccctggagctggtggtggggcgtcaaaattgccccagg 155339794



 Score =  165 bits (83), Expect = 9e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                             
Query: 377       agttcctgatgtcaggctggctgagtacctacacctggcgctgcgatccagtggactttt 436
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339354 agttcctgatgtcaggctggctgagtacctacacctggcgctgcgatccagtggactttt 155339413

                                        
Query: 437       ccaacagcccggaggccctgagg 459
                 |||||||||||||||||||||||
Sbjct: 155339414 ccaacagcccggaggccctgagg 155339436



 Score =  123 bits (62), Expect = 3e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                             
Query: 459       gatggttcgagtggcctggctcttcctcttctccaagttcattgagctgatggacacagt 518
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155339540 gatggttcgagtggcctggctcttcctcttctccaagttcattgagctgatggacacagt 155339599

                   
Query: 519       ga 520
                 ||
Sbjct: 155339600 ga 155339601



 Score =  121 bits (61), Expect = 1e-24
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                             
Query: 127       gaacccttagccgggatggaggctgtggtgaacttgtaccaggagatgatgaagcacgca 186
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155338751 gaacccttagccgggatggaggctgtggtgaacttgtaccaggagatgatgaagcacgca 155338810

                  
Query: 187       g 187
                 |
Sbjct: 155338811 g 155338811


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1375     caggagcttctcggccaaaggtcagggtgggtgggggcctgggcatacagcctgtggagg 1434
                |||||||| || ||||||||||||||||||||||   ||||||  |||||||||||||||
Sbjct: 30048456 caggagctacttggccaaaggtcagggtgggtggatccctgggactacagcctgtggagg 30048515

                   
Query: 1435     ctg 1437
                |||
Sbjct: 30048516 ctg 30048518


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,795,776
Number of extensions: 362
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 8
Length of query: 1490
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1469
Effective length of database: 2,808,413,156
Effective search space: 4125558926164
Effective search space used: 4125558926164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)