Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012797
(1762 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535576.2| PREDICTED: similar to chaperonin containing TCP... 971 0.0
Alignment gi|XP_856031.1| PREDICTED: similar to T-complex protein 1, thet... 710 0.0
Alignment gi|XP_855953.1| PREDICTED: similar to chaperonin containing TCP... 551 e-157
Alignment gi|XP_539926.1| PREDICTED: similar to T-complex protein 1 [Cani... 254 2e-67
Alignment gi|XP_541181.1| PREDICTED: similar to T-complex protein 1, alph... 221 2e-57
Alignment gi|XP_862776.1| PREDICTED: similar to T-complex protein 1, alph... 219 5e-57
Alignment gi|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsi... 215 1e-55
Alignment gi|XP_862675.1| PREDICTED: similar to T-complex protein 1, alph... 215 1e-55
Alignment gi|XP_539390.2| PREDICTED: similar to T-complex protein 1, delt... 211 2e-54
Alignment gi|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta ... 190 4e-48
>ref|XP_535576.2| PREDICTED: similar to chaperonin containing TCP1, subunit 8 (theta)
isoform 1 [Canis familiaris].
Length = 548
Score = 971 bits (2510), Expect = 0.0
Identities = 493/548 (89%), Positives = 508/548 (92%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIAC+KAHEILPDLVCCSAKNLRDVDEVS+LLHTS+MSKQYGNE FLA
Sbjct: 121 IGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSTLLHTSIMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVK+AKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKNAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM++QV+AIADTGANV+VTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDSQVKAIADTGANVIVTGGKVADM 300
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 301 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 360
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERA+DDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 361 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAIDDGVNTFKVLTRDKRLVPGGGATEIELA 420
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGET PGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLYAVHQEGNKNVGL
Sbjct: 421 KQITSYGETRPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 480
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAG+LDTYLGKYWAIKLATNAA+TVLRVDQIIM +
Sbjct: 481 DIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAITVLRVDQIIMAKPAGGPKPPSGKK 540
Query: 1703 NWDDDQND 1726
+WD+DQND
Sbjct: 541 DWDEDQND 548
>ref|XP_856031.1| PREDICTED: similar to T-complex protein 1, theta subunit
(TCP-1-theta) (CCT-theta) isoform 3 [Canis familiaris].
Length = 489
Score = 710 bits (1833), Expect = 0.0
Identities = 388/548 (70%), Positives = 416/548 (75%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGP N +
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGP--------NGM 52
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
K+ + + L +L V + AA ++ +E EV ++V
Sbjct: 53 NKMVINH-----LEKLFVTNDAATIL------RELEVQHPAAKMIVMASH---------- 91
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+ EV +G A +L + E
Sbjct: 92 --MQEQEVGDGTNFVLVFAGALL----------------------------ELAEELLRI 121
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
L +SIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVK+AKIA
Sbjct: 122 GLSVSEAMSIFPDSGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKNAKIA 181
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM++QV+AIADTGANV+VTGGKVADM
Sbjct: 182 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDSQVKAIADTGANVIVTGGKVADM 241
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 242 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 301
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERA+DDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 302 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAIDDGVNTFKVLTRDKRLVPGGGATEIELA 361
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGET PGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLYAVHQEGNKNVGL
Sbjct: 362 KQITSYGETRPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 421
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAG+LDTYLGKYWAIKLATNAA+TVLRVDQIIM +
Sbjct: 422 DIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAITVLRVDQIIMAKPAGGPKPPSGKK 481
Query: 1703 NWDDDQND 1726
+WD+DQND
Sbjct: 482 DWDEDQND 489
>ref|XP_855953.1| PREDICTED: similar to chaperonin containing TCP1, subunit 8 (theta)
isoform 2 [Canis familiaris].
Length = 314
Score = 551 bits (1420), Expect = e-157
Identities = 280/314 (89%), Positives = 288/314 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIAC+KAHEILPDLVCCSAKNLRDVDEVS+LLHTS+MSKQYGNE FLA
Sbjct: 121 IGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSTLLHTSIMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVK+AKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKNAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM++QV+AIADTGANV+VTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDSQVKAIADTGANVIVTGGKVADM 300
Query: 983 ALHYANKYNIMLVR 1024
ALHYANKYNIMLVR
Sbjct: 301 ALHYANKYNIMLVR 314
>ref|XP_539926.1| PREDICTED: similar to T-complex protein 1 [Canis familiaris].
Length = 555
Score = 254 bits (649), Expect = 2e-67
Identities = 155/502 (30%), Positives = 258/502 (51%), Gaps = 1/502 (0%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
EE + ++ A + LA+ R YGP+G K+++ T AA IL+ LE++HPAA++
Sbjct: 30 EEHLLCSVPAAQTLARVIRPCYGPHGRQKLLVTARGTTVFTGSAAAILQALELEHPAARL 89
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
+ A+H Q + GDG FV++ R GL S++ E Y A + +LP
Sbjct: 90 LREAAHKQAESCGDGAAFVVLLAEALLQQAEHLLRAGLPRSQLREAYAAATAEVLALLPS 149
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVC 697
L S ++L +++ L++ + + +L KL+A AC + G F+ + + VC
Sbjct: 150 L---SIRSLGPLEDPFWALYSVMNTHSASQMDYLTKLVAHACWATKELDGSFHRERVGVC 206
Query: 698 KIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYSCPFDGMITETKGTVLIKTAEE 874
+ M + G V SV A++A++ C F T + ++ +
Sbjct: 207 TLRGGRLEDSCLLPGMALAAKPCGQVISVLHGARVALFVCAFGPASPNAPATARLSSSAD 266
Query: 875 LMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRL 1054
L F KG E L+E QV + NVVV G + + L A+KY IM+++ S+ D+ L
Sbjct: 267 LTKFRKGSEQLIEKQVAQLVTASINVVVVWGNINENTLTLADKYGIMVIQARSRRDMVYL 326
Query: 1055 CKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNL 1234
+ +G +P L PP+ + G C VY ++G+ VVF+ E TI LRG+T
Sbjct: 327 SEVLGTPLMPYLIPPL--KPGKCQRVYQQDLGEGMAVVFEWECPATPALTIALRGATAEG 384
Query: 1235 MDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEA 1414
+ E+A G++ + L +D RL+PG GATE+ LAK ++ G GL A FA+A
Sbjct: 385 LKSAEQAAYHGIDAYFQLCQDPRLLPGAGATEMALAKILSEKGSRLEGLNGPAFLAFAQA 444
Query: 1415 FESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGK 1594
+S+P LAEN+G+ +EV++++ HQ GN VG+ +E + ++ + GV DT + K
Sbjct: 445 LQSLPETLAENAGLVVSEVMAEMKGAHQAGNLLVGVGVE----GIINVTQEGVWDTLVAK 500
Query: 1595 YWAIKLATNAAVTVLRVDQIIM 1660
++ + A+ ++ VD+II+
Sbjct: 501 AQGLRAVADVALQLVNVDEIIV 522
>ref|XP_541181.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 1 [Canis familiaris].
Length = 556
Score = 221 bits (563), Expect = 2e-57
Identities = 152/516 (29%), Positives = 262/516 (50%), Gaps = 21/516 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDELGR-DCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+R
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 318
Query: 1052 LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
+ K GAT L L EE +G + V + D ++++ K+ K + S I+L
Sbjct: 319 IAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 377
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG+ D + D++ER++ D + K + K +VPGGGA E L+ + +Y + EQ A
Sbjct: 378 RGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 437
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 1549
I +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKP-- 495
Query: 1550 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 496 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531
>ref|XP_862776.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 8 [Canis familiaris].
Length = 556
Score = 219 bits (559), Expect = 5e-57
Identities = 152/516 (29%), Positives = 260/516 (50%), Gaps = 21/516 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDELGR-DCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFKKE--TEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K E + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCEKCNASMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+R
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 318
Query: 1052 LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
+ K GAT L L EE +G + V + D ++++ K+ K + S I+L
Sbjct: 319 IAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 377
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG+ D + D++ER++ D + K + K +VPGGGA E L+ + +Y + EQ A
Sbjct: 378 RGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 437
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 1549
I +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKP-- 495
Query: 1550 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 496 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531
>ref|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) isoform 2 [Canis
familiaris].
Length = 541
Score = 215 bits (548), Expect = 1e-55
Identities = 152/504 (30%), Positives = 251/504 (49%), Gaps = 6/504 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T RT+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV 694
+++D + + T++ SK + + + IA V D +VD I+V
Sbjct: 152 SDSVLVDIKDTEPLIQTAKTTLGSKVFSKKKDIMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V++AKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVENAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 1048
E+ K E+ E +Q I +TGAN+ + D A H + N+ VR ++
Sbjct: 272 EDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 331
Query: 1049 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGS 1222
+ G +PR + E++G V G T+ ++V + K A+ T+ +RG
Sbjct: 332 LIAIATGGRIVPRFSELTSEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV-TVFIRGG 390
Query: 1223 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 1402
++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA++
Sbjct: 391 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRA 450
Query: 1403 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 1582
FA+A E IP AL+ENSG+ + ++++ A Q N L I+ DM + V++T
Sbjct: 451 FADALEVIPMALSENSGMNPIQTMTEVRA-RQVKEMNPALGIDCLHKGTNDMKQQHVIET 509
Query: 1583 YLGKYWAIKLATNAAVTVLRVDQI 1654
+GK I LAT +L++D I
Sbjct: 510 LIGKKQQISLATQMVRMILKIDDI 533
>ref|XP_862675.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 4 [Canis familiaris].
Length = 558
Score = 215 bits (547), Expect = 1e-55
Identities = 151/518 (29%), Positives = 262/518 (50%), Gaps = 23/518 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDELGR-DCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+R
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 318
Query: 1052 LCKTVG--ATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTI 1207
+ K G +T L L EE +G + V + D ++++ K+ K + S I
Sbjct: 319 IAKASGVVSTVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-I 377
Query: 1208 VLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQ 1387
+LRG+ D + D++ER++ D + K + K +VPGGGA E L+ + +Y + EQ
Sbjct: 378 ILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQ 437
Query: 1388 YAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVP 1543
AI +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 LAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKP 497
Query: 1544 AVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 498 --RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 533
>ref|XP_539390.2| PREDICTED: similar to T-complex protein 1, delta subunit
(TCP-1-delta) (CCT-delta) (A45) [Canis familiaris].
Length = 539
Score = 211 bits (536), Expect = 2e-54
Identities = 139/506 (27%), Positives = 252/506 (49%), Gaps = 10/506 (1%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSKQYGN-EAFLAKLIAQACVSIFPDSGHFNVD--NIRVCK 700
L D + + + TS+ SK + L+ + A + + + +VD +I++ K
Sbjct: 153 RPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVK 212
Query: 701 IXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEEL 877
+V +K +T V+ AKI + T+ +++ ++
Sbjct: 213 KLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQM 272
Query: 878 MNFSKGEENLMEAQVQAIADTGANVVVTGGKV-----ADMALHYANKYNIMLVRLNSKWD 1042
+ E + V+ I TG NV++ + +D+ALH+ NK IM+V+ + D
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIERED 332
Query: 1043 LRRLCKTVGATALPRLTPPVLEEMGHCD-SVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 1219
+ +CKT+G + + + +G + + ++ G +++ G TIV+RG
Sbjct: 333 IEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCTSPGKTVTIVVRG 392
Query: 1220 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 1399
S ++++ ER++ D + + L + + L+ GGGA EIELA ++T Y T G+E Y ++
Sbjct: 393 SNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVR 452
Query: 1400 KFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 1579
FA+A E IP LAEN+G+ +++L H +G K G+++ + ++LE V+
Sbjct: 453 AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRK--GGISNILEELVVQ 510
Query: 1580 TYLGKYWAIKLATNAAVTVLRVDQII 1657
L A+ LAT ++L++D ++
Sbjct: 511 PLLVSVSALTLATETVRSILKIDDVV 536
>ref|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
(CCT-eta) (HIV-1 Nef interacting protein) isoform 1
[Canis familiaris].
Length = 543
Score = 190 bits (482), Expect = 4e-48
Identities = 140/522 (26%), Positives = 241/522 (46%), Gaps = 10/522 (1%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K D E LL T++ SK + AF AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKKE--DKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVI 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKET-----EGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E + IA+ +
Sbjct: 185 ML---DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ +++ I +GA VV++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVATQ 301
Query: 992 YANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVF 1171
Y ++ + DL+R G + + + +G C +++G + F
Sbjct: 302 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFF 361
Query: 1172 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 1351
+ TI+LRG + M++ ER++ D + + ++ +V GGGA E+EL+K +
Sbjct: 362 TGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1352 TSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIE 1531
Y T PG +Q I +A+A E IPR L +N+G A +++KL A H +G G+D+
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDVN 480
Query: 1532 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
E + D EA V + + + A+ A+ AA ++ VD+ I
Sbjct: 481 NE--DIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 520
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,726,044
Number of extensions: 1657240
Number of successful extensions: 4818
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 4759
Number of HSP's successfully gapped: 63
Length of query: 587
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 479
Effective length of database: 15,274,216
Effective search space: 7316349464
Effective search space used: 7316349464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012797
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012797
(1762 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028781.1| T-complex protein 1 subunit theta [Bos tauru... 976 0.0
Alignment gi|XP_002688812.1| PREDICTED: T-complex protein 1 subunit theta... 948 0.0
Alignment gi|XP_869134.1| PREDICTED: T-complex protein 1 subunit theta-li... 948 0.0
Alignment gi|XP_875999.1| PREDICTED: T-complex protein 1-like [Bos taurus]. 230 3e-60
Alignment gi|XP_002687026.1| PREDICTED: T-complex protein 1-like [Bos tau... 230 3e-60
Alignment gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru... 224 2e-58
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 214 1e-55
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 207 2e-53
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 207 2e-53
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 207 2e-53
>ref|NP_001028781.1| T-complex protein 1 subunit theta [Bos taurus].
Length = 548
Score = 976 bits (2524), Expect = 0.0
Identities = 498/548 (90%), Positives = 508/548 (92%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+GLSVSEVIEGYEIAC+KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNE FLA
Sbjct: 121 LGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIK+AEELMNFSKGEENLM+AQV+AIADTGANVVVTGG+VADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADM 300
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRL PPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 301 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQV 360
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 361 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 420
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGETCPGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLYAVHQEGNKNVGL
Sbjct: 421 KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 480
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM +
Sbjct: 481 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKK 540
Query: 1703 NWDDDQND 1726
+WD+DQND
Sbjct: 541 DWDEDQND 548
>ref|XP_002688812.1| PREDICTED: T-complex protein 1 subunit theta-like [Bos taurus].
Length = 545
Score = 948 bits (2450), Expect = 0.0
Identities = 486/548 (88%), Positives = 501/548 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKA GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKALGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASH+QEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHVQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+GLSVSEVIEGYEIAC+KA PDLVCCSAKNL+DVDEV SLLHTSVMSKQYGNE FLA
Sbjct: 121 LGLSVSEVIEGYEIACKKAP---PDLVCCSAKNLQDVDEVLSLLHTSVMSKQYGNEVFLA 177
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 178 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 237
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIK+AEELMNFSKGEENLM+AQV+AIADTGANV+VTGG+VADM
Sbjct: 238 VYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVIVTGGRVADM 297
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGA ALPRL PPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 298 ALHYANKYNIMLVRLNSKWDLRRLCKTVGAIALPRLNPPVLEEMGHCDSVYLSEVGDTQV 357
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 358 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 417
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGETCPGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLYAVHQEGNKN+GL
Sbjct: 418 KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNIGL 477
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAGVLDTYLGK+WAIKLATNAAVTVLRVDQIIM +
Sbjct: 478 DIEAEVPAVKDMLEAGVLDTYLGKHWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKK 537
Query: 1703 NWDDDQND 1726
+WD+DQND
Sbjct: 538 DWDEDQND 545
>ref|XP_869134.1| PREDICTED: T-complex protein 1 subunit theta-like isoform 1 [Bos
taurus].
Length = 545
Score = 948 bits (2450), Expect = 0.0
Identities = 486/548 (88%), Positives = 501/548 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKA GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKALGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASH+QEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHVQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+GLSVSEVIEGYEIAC+KA PDLVCCSAKNL+DVDEV SLLHTSVMSKQYGNE FLA
Sbjct: 121 LGLSVSEVIEGYEIACKKAP---PDLVCCSAKNLQDVDEVLSLLHTSVMSKQYGNEVFLA 177
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 178 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 237
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIK+AEELMNFSKGEENLM+AQV+AIADTGANV+VTGG+VADM
Sbjct: 238 VYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVIVTGGRVADM 297
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGA ALPRL PPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 298 ALHYANKYNIMLVRLNSKWDLRRLCKTVGAIALPRLNPPVLEEMGHCDSVYLSEVGDTQV 357
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 358 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 417
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGETCPGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLYAVHQEGNKN+GL
Sbjct: 418 KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNIGL 477
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAGVLDTYLGK+WAIKLATNAAVTVLRVDQIIM +
Sbjct: 478 DIEAEVPAVKDMLEAGVLDTYLGKHWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKK 537
Query: 1703 NWDDDQND 1726
+WD+DQND
Sbjct: 538 DWDEDQND 545
>ref|XP_875999.1| PREDICTED: T-complex protein 1-like [Bos taurus].
Length = 534
Score = 230 bits (587), Expect = 3e-60
Identities = 152/523 (29%), Positives = 258/523 (49%), Gaps = 2/523 (0%)
Frame = +2
Query: 98 PKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFV 277
P AP + L KH + ++ A LA+ R YGP G K+++ +
Sbjct: 7 PTAPELPERLPAEEKH-------LLSSLAAADTLARVLRPCYGPQGRQKLLVTAKGDTVL 59
Query: 278 TNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSV 457
T AA ILR L+++HPAA+++ A+ Q ++ GDG FV++ R GL
Sbjct: 60 TGHAAAILRALQLEHPAARLLREAAQGQAEQSGDGAAFVVLLAQALLAQAERLLRAGLPR 119
Query: 458 SEVIEGYEIACRKAHEILPDLVCCSAKNLRD-VDEVSSLLHTSVMSKQYGNEAFLAKLIA 634
+++ E Y + +LP L + L D V + S+++T + + LA L+A
Sbjct: 120 AQLREAYAAVAAETLALLPSLAVRALGPLEDPVWALRSVMNTHALWRT----DHLAGLVA 175
Query: 635 QACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYS 811
+AC + G F + + VC + + + G VT V A++A+ +
Sbjct: 176 RACWATRELDGGFRPERVGVCALPGARQEDSCLLPGLALPGKPCGQVTMVLSGARVALLA 235
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALH 991
C F T + + ++L+ F KG E+L+E QV +A ANVVV G + + L
Sbjct: 236 CDFGPARPLAPATARLSSPDDLIRFRKGSESLIEKQVAQLA-AAANVVVVSGDIDEKTLT 294
Query: 992 YANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVF 1171
+A+KY +M++++ S+ ++ L + + P L PP+ E G C VY E+G+ VVF
Sbjct: 295 HADKYGLMVIQVASRREMVYLSEVLRTPLTPYLVPPL--EPGKCQRVYGQELGEALAVVF 352
Query: 1172 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 1351
+ E T+VLRG+T + + E+A G++ + L +D RL+PG GATE+ LAK +
Sbjct: 353 EWESTGTPALTLVLRGATAHGLRGAEQAAYSGIDAYFQLCQDPRLLPGAGATEMALAKML 412
Query: 1352 TSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIE 1531
+ G G FA+A +S+P LAEN+G+ V++++ HQ GN +G+ +E
Sbjct: 413 SETGTKLEGPNGPTFLAFAQALQSLPETLAENAGLAVPHVMAEMNGAHQAGNFLIGVGVE 472
Query: 1532 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 1660
+ ++ + V DT + K ++ + +L VD I++
Sbjct: 473 ----GIINVAQEEVWDTLIAKAQGLRAVADVVQQLLTVDDIVL 511
>ref|XP_002687026.1| PREDICTED: T-complex protein 1-like [Bos taurus].
Length = 534
Score = 230 bits (586), Expect = 3e-60
Identities = 152/523 (29%), Positives = 258/523 (49%), Gaps = 2/523 (0%)
Frame = +2
Query: 98 PKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFV 277
P AP + L KH + ++ A LA+ R YGP G K+++ +
Sbjct: 7 PTAPELPERLPAEEKH-------LLSSLAAADTLARVLRPCYGPQGRQKLLVTAKGDTVL 59
Query: 278 TNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSV 457
T AA ILR L+++HPAA+++ A+ Q ++ GDG FV++ R GL
Sbjct: 60 TGHAAAILRALQLEHPAARLLREAAQGQAEQSGDGAAFVVLLAQALLAQAERLLRAGLPR 119
Query: 458 SEVIEGYEIACRKAHEILPDLVCCSAKNLRD-VDEVSSLLHTSVMSKQYGNEAFLAKLIA 634
+++ E Y + +LP L + L D V + S+++T + + LA L+A
Sbjct: 120 AQLREAYAAVAAETLALLPSLAVRALGPLEDPVWALRSVMNTHALWRT----DHLAGLVA 175
Query: 635 QACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYS 811
+AC + G F + + VC + + + G VT V A++A+ +
Sbjct: 176 RACWATRELDGGFRPERVGVCALPGARQEDSCLLPGLALPGKPCGQVTMVLSGARVALLA 235
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALH 991
C F T + + ++L+ F KG E+L+E QV +A ANVVV G + + L
Sbjct: 236 CDFRPARPLAPATARLSSPDDLIRFRKGSESLIEKQVAQLA-AAANVVVVSGDIDEKTLT 294
Query: 992 YANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVF 1171
+A+KY +M++++ S+ ++ L + + P L PP+ E G C VY E+G+ VVF
Sbjct: 295 HADKYGLMVIQVASRREMVYLSEVLRTPLTPYLVPPL--EPGKCQRVYGQELGEALAVVF 352
Query: 1172 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 1351
+ E T+VLRG+T + + E+A G++ + L +D RL+PG GATE+ LAK +
Sbjct: 353 EWESTGTPALTLVLRGATAHGLRGAEQAAYSGIDAYFQLCQDPRLLPGAGATEMALAKML 412
Query: 1352 TSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIE 1531
+ G G FA+A +S+P LAEN+G+ V++++ HQ GN +G+ +E
Sbjct: 413 SETGTKLEGPNGPTFLAFAQALQSLPETLAENAGLAVPHVMAEMNGAHQAGNFLIGVGVE 472
Query: 1532 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 1660
+ ++ + V DT + K ++ + +L VD I++
Sbjct: 473 ----GIINVAQEEVWDTLIAKAQGLRAVADVVQQLLTVDDIVL 511
>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
Length = 556
Score = 224 bits (571), Expect = 2e-58
Identities = 154/516 (29%), Positives = 260/516 (50%), Gaps = 21/516 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI----FPDSGHFNVDNIRVC 697
L D + + TS+ SK G N F A L+ A ++I + V++I V
Sbjct: 140 TDELGR-DCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+R
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKR 318
Query: 1052 LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
+ K GAT L L EE +G + V + D ++++ K+ K + S ++L
Sbjct: 319 IAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-VIL 377
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG+ D + D++ER++ D + K + K +VPGGGA E L+ + +Y + EQ A
Sbjct: 378 RGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 437
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 1549
I +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 IAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP-- 495
Query: 1550 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 496 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 214 bits (546), Expect = 1e-55
Identities = 141/506 (27%), Positives = 253/506 (50%), Gaps = 10/506 (1%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 38 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 97
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 98 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 155
Query: 530 SAKNLRDVDEVSSLLHTSVMSKQYGN-EAFLAKLIAQACVSIFPDSGHFNVD--NIRVCK 700
+ L D + + + TS+ SK + L+ + A + + + +VD +I++ K
Sbjct: 156 RPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVK 215
Query: 701 IXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEEL 877
+V +K +T V+ AKI + T+ +++ ++
Sbjct: 216 KLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQM 275
Query: 878 MNFSKGEENLMEAQVQAIADTGANVVVTGGKV-----ADMALHYANKYNIMLVRLNSKWD 1042
+ E + V+ I TG NV++ + +D+ALH+ NK IM+V+ + D
Sbjct: 276 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIERED 335
Query: 1043 LRRLCKTVGATALPRLTPPVLEEMGHCD-SVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 1219
+ +CKT+G + + + +G + + +S G +++ G TIV+RG
Sbjct: 336 IEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRG 395
Query: 1220 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 1399
S ++++ ER++ D + + L + + L+ GGGA EIELA ++T Y T G+E Y I+
Sbjct: 396 SNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIR 455
Query: 1400 KFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 1579
FA+A E IP LAEN+G+ +++L H +G K G+++ + ++LE V+
Sbjct: 456 AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRK--GGISNILEEQVVQ 513
Query: 1580 TYLGKYWAIKLATNAAVTVLRVDQII 1657
L A+ LAT ++L++D ++
Sbjct: 514 PLLVSVSALTLATETVRSILKIDDVV 539
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 207 bits (527), Expect = 2e-53
Identities = 151/504 (29%), Positives = 248/504 (49%), Gaps = 6/504 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV 694
++++ + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 1048
E+ K E+ E ++ I +TGAN+ + D A H + ++ VR ++
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNDLPAVRWVGGPEIE 331
Query: 1049 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGS 1222
+ G +PR + E++G V G T+ ++V + K A+ TI +RG
Sbjct: 332 LIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV-TIFIRGG 390
Query: 1223 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 1402
++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA++
Sbjct: 391 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRA 450
Query: 1403 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 1582
FA+A E IP ALAENSG+ + ++++ A Q N L I+ DM V++T
Sbjct: 451 FADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEVNPALGIDCLHKGTNDMKHQHVIET 509
Query: 1583 YLGKYWAIKLATNAAVTVLRVDQI 1654
+GK I LAT +L++D I
Sbjct: 510 LIGKKQQISLATQMVRMILKIDDI 533
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 207 bits (527), Expect = 2e-53
Identities = 151/504 (29%), Positives = 248/504 (49%), Gaps = 6/504 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV 694
++++ + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 1048
E+ K E+ E ++ I +TGAN+ + D A H + ++ VR ++
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNDLPAVRWVGGPEIE 331
Query: 1049 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGS 1222
+ G +PR + E++G V G T+ ++V + K A+ TI +RG
Sbjct: 332 LIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV-TIFIRGG 390
Query: 1223 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 1402
++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA++
Sbjct: 391 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRA 450
Query: 1403 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 1582
FA+A E IP ALAENSG+ + ++++ A Q N L I+ DM V++T
Sbjct: 451 FADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEVNPALGIDCLHKGTNDMKHQHVIET 509
Query: 1583 YLGKYWAIKLATNAAVTVLRVDQI 1654
+GK I LAT +L++D I
Sbjct: 510 LIGKKQQISLATQMVRMILKIDDI 533
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 207 bits (527), Expect = 2e-53
Identities = 151/504 (29%), Positives = 248/504 (49%), Gaps = 6/504 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV 694
++++ + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 1048
E+ K E+ E ++ I +TGAN+ + D A H + ++ VR ++
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNDLPAVRWVGGPEIE 331
Query: 1049 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGS 1222
+ G +PR + E++G V G T+ ++V + K A+ TI +RG
Sbjct: 332 LIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV-TIFIRGG 390
Query: 1223 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 1402
++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA++
Sbjct: 391 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRA 450
Query: 1403 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 1582
FA+A E IP ALAENSG+ + ++++ A Q N L I+ DM V++T
Sbjct: 451 FADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEVNPALGIDCLHKGTNDMKHQHVIET 509
Query: 1583 YLGKYWAIKLATNAAVTVLRVDQI 1654
+GK I LAT +L++D I
Sbjct: 510 LIGKKQQISLATQMVRMILKIDDI 533
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,997,468
Number of extensions: 1611686
Number of successful extensions: 4880
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4847
Number of HSP's successfully gapped: 19
Length of query: 587
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 479
Effective length of database: 14,107,870
Effective search space: 6757669730
Effective search space used: 6757669730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012797
(1762 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358947.1| PREDICTED: t-complex protein 1 subunit theta... 988 0.0
Alignment gi|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta... 981 0.0
Alignment gi|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta... 949 0.0
Alignment gi|XP_003358950.1| PREDICTED: t-complex protein 1 subunit theta... 836 0.0
Alignment gi|XP_003360114.1| PREDICTED: putative T-complex protein 1 subu... 235 7e-62
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 221 1e-57
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 213 4e-55
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 189 3e-48
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 189 4e-48
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 173 2e-43
>ref|XP_003358947.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 1 [Sus
scrofa].
Length = 548
Score = 988 bits (2555), Expect = 0.0
Identities = 507/548 (92%), Positives = 510/548 (93%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA
Sbjct: 121 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQV+AIADTGANVVVTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADM 300
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 301 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 360
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 361 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 420
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL
Sbjct: 421 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 480
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM +
Sbjct: 481 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKK 540
Query: 1703 NWDDDQND 1726
+WDDDQND
Sbjct: 541 DWDDDQND 548
>ref|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 2 [Sus
scrofa].
Length = 557
Score = 981 bits (2535), Expect = 0.0
Identities = 507/557 (91%), Positives = 510/557 (91%), Gaps = 9/557 (1%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAK---------HFSGLEEAVYRNIQACKELAQTTRTAYGPNG 235
MALHVPKAPGFAQMLKEGAK HFSGLEEAVYRNIQACKELAQTTRTAYGPNG
Sbjct: 1 MALHVPKAPGFAQMLKEGAKVRKGGRGSEHFSGLEEAVYRNIQACKELAQTTRTAYGPNG 60
Query: 236 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXX 415
MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF
Sbjct: 61 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGAL 120
Query: 416 XXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK 595
RIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK
Sbjct: 121 LELAEELLRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK 180
Query: 596 QYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDV 775
QYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDV
Sbjct: 181 QYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDV 240
Query: 776 TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVV 955
TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQV+AIADTGANVV
Sbjct: 241 TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVKAIADTGANVV 300
Query: 956 VTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVY 1135
VTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVY
Sbjct: 301 VTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVY 360
Query: 1136 LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPG 1315
LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPG
Sbjct: 361 LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPG 420
Query: 1316 GGATEIELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVH 1495
GGATEIELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVH
Sbjct: 421 GGATEIELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVH 480
Query: 1496 QEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXX 1675
QEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM
Sbjct: 481 QEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAG 540
Query: 1676 XXXXXXXXENWDDDQND 1726
++WDDDQND
Sbjct: 541 GPKPPSGKKDWDDDQND 557
>ref|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 3 [Sus
scrofa].
Length = 529
Score = 949 bits (2452), Expect = 0.0
Identities = 487/528 (92%), Positives = 490/528 (92%)
Frame = +2
Query: 143 HFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQH 322
HFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQH
Sbjct: 2 HFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQH 61
Query: 323 PAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAH 502
PAAKMIVMASHMQEQEVGDGTNFVLVF RIGLSVSEVIEGYEIACRKAH
Sbjct: 62 PAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAH 121
Query: 503 EILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD 682
EILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD
Sbjct: 122 EILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD 181
Query: 683 NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIK 862
NIRVCKI MVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIK
Sbjct: 182 NIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIK 241
Query: 863 TAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWD 1042
TAEELMNFSKGEENLMEAQV+AIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWD
Sbjct: 242 TAEELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWD 301
Query: 1043 LRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGS 1222
LRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGS
Sbjct: 302 LRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGS 361
Query: 1223 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 1402
TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK
Sbjct: 362 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 421
Query: 1403 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 1582
FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT
Sbjct: 422 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 481
Query: 1583 YLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXENWDDDQND 1726
YLGKYWAIKLATNAAVTVLRVDQIIM ++WDDDQND
Sbjct: 482 YLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKDWDDDQND 529
>ref|XP_003358950.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 4 [Sus
scrofa].
Length = 475
Score = 836 bits (2159), Expect = 0.0
Identities = 430/471 (91%), Positives = 433/471 (91%)
Frame = +2
Query: 314 VQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACR 493
VQHPAAKMIVMASHMQEQEVGDGTNFVLVF RIGLSVSEVIEGYEIACR
Sbjct: 5 VQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACR 64
Query: 494 KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHF 673
KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHF
Sbjct: 65 KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHF 124
Query: 674 NVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTV 853
NVDNIRVCKI MVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTV
Sbjct: 125 NVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTV 184
Query: 854 LIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNS 1033
LIKTAEELMNFSKGEENLMEAQV+AIADTGANVVVTGGKVADMALHYANKYNIMLVRLNS
Sbjct: 185 LIKTAEELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNS 244
Query: 1034 KWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
KWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL
Sbjct: 245 KWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 304
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA
Sbjct: 305 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 364
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGV 1573
IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGV
Sbjct: 365 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGV 424
Query: 1574 LDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXENWDDDQND 1726
LDTYLGKYWAIKLATNAAVTVLRVDQIIM ++WDDDQND
Sbjct: 425 LDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKDWDDDQND 475
>ref|XP_003360114.1| PREDICTED: putative T-complex protein 1 subunit theta-like 2-like
[Sus scrofa].
Length = 810
Score = 235 bits (599), Expect = 7e-62
Identities = 150/527 (28%), Positives = 261/527 (49%), Gaps = 1/527 (0%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
M P AP + L + E+ + ++ A + LA R YGP G+ K+++
Sbjct: 265 MGSRAPPAPQLPERLGTQVE-----EKHLLSSLAAAQALATVLRPCYGPQGLQKLLVTAK 319
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
+ T A ILR L+++HPAA+++ A+ Q ++ GDG FV++ R
Sbjct: 320 GETVFTGYATAILRALQLEHPAARLLREAAQGQAEQSGDGVAFVVLLAQALLAQAEDLLR 379
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
GL +++ E Y A + +LP L + ++L +++ LH+ + + L
Sbjct: 380 AGLPRAQLREAYAAAAAETLALLPSL---AIRSLGPLEDPFWALHSVMTTHTLAQGDRLT 436
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKI 799
K++A AC + G F + + VC + + + G VT V + A++
Sbjct: 437 KMVAHACSATRELDGAFRPERVGVCALPGARLEDSCLLPGLALPGKPCGQVTMVQRGARV 496
Query: 800 AVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVAD 979
A+ +C F T L+ + +L KG E L+E QV +A NVVV G + +
Sbjct: 497 ALLACAFGPARPIAPATALLSSPADLTELPKGSERLIEKQVGQLAAASINVVVVWGDIDE 556
Query: 980 MALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ 1159
L A++ +M++++ S+ ++ L + G +P L PP+ + G C VY E+G+
Sbjct: 557 ETLTQADQLGLMVIQVQSRREMVYLSEVFGTPLMPYLLPPL--QPGKCQRVYGQELGEGL 614
Query: 1160 VVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIEL 1339
VVF+ E T+VLRG+T + E+AV G++ + L +D RL+PG GATE+ L
Sbjct: 615 AVVFEWESPGTPALTLVLRGATAEGLRRAEQAVYHGIDAYFQLCQDPRLLPGAGATEMAL 674
Query: 1340 AKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVG 1519
AK ++ G G A FA+A +S+P+ LAEN+G+ A +V++++ HQ GN +G
Sbjct: 675 AKMLSEKGTKLEGPSGPAFLAFAQALKSLPKTLAENAGLAAADVMAEMNGAHQAGNFLMG 734
Query: 1520 LDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 1660
+ +E + ++ V DT + K ++ A + + +L VD I++
Sbjct: 735 VGVEGTINVAREQ----VWDTLIAKAQGLRAAADVVLQLLTVDDIVV 777
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 221 bits (562), Expect = 1e-57
Identities = 153/516 (29%), Positives = 262/516 (50%), Gaps = 21/516 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A ++I + D + V++I +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+R
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 318
Query: 1052 LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
+ K GAT L L EE +G + V + D ++++ K+ K + S I+L
Sbjct: 319 IAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 377
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG+ D + D++ER++ D + + + K +VPGGGA E L+ + +Y + EQ A
Sbjct: 378 RGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 437
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 1549
I +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP-- 495
Query: 1550 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 496 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 213 bits (541), Expect = 4e-55
Identities = 140/506 (27%), Positives = 252/506 (49%), Gaps = 10/506 (1%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSKQYGN-EAFLAKLIAQACVSIFPDSGHFNVD--NIRVCK 700
L D D + + TS+ SK + L+ + A + + + +VD +I++ K
Sbjct: 153 RPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVK 212
Query: 701 IXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEEL 877
+V +K +T V+ AKI + T+ +++ ++
Sbjct: 213 KLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQM 272
Query: 878 MNFSKGEENLMEAQVQAIADTGANVVVTGGKV-----ADMALHYANKYNIMLVRLNSKWD 1042
+ E + V+ I TG NV++ + +D+ALH+ NK IM+V+ + D
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIERED 332
Query: 1043 LRRLCKTVGATALPRLTPPVLEEMGHCD-SVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 1219
+ +CKT+G + + + +G + + ++ G +++ G TIV+RG
Sbjct: 333 IEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKMLKITGCASPGKTVTIVVRG 392
Query: 1220 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 1399
S ++++ ER++ D + + L + + L+ GGGA EIELA ++T Y T G+E Y ++
Sbjct: 393 SNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVR 452
Query: 1400 KFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 1579
FA+A E IP LAEN+G+ +++L H +G K G+++ + ++LE V+
Sbjct: 453 AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRK--GGISNILEEMVVQ 510
Query: 1580 TYLGKYWAIKLATNAAVTVLRVDQII 1657
L A+ LAT ++L++D ++
Sbjct: 511 PLLVSVSALTLATETVRSILKIDDVV 536
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
Length = 545
Score = 189 bits (481), Expect = 3e-48
Identities = 145/524 (27%), Positives = 245/524 (46%), Gaps = 12/524 (2%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSI--F 655
A L + N RD+ + +++++S+ +K + LA IA V F
Sbjct: 128 KALDDMISTLKKISTPVDTNNRDM--MLNIINSSITTKVISRWSSLACNIALDAVKTVQF 185
Query: 656 PDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDAKIAVY 808
++G +D RV KI ++ K DVT +K+ +I +
Sbjct: 186 EENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNPRIVLL 241
Query: 809 SCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMAL 988
+ E++ + I E+ + EE ++ + I +VV+T ++D+A
Sbjct: 242 DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 301
Query: 989 HYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGH-CDSVYLSEVGDTQVV 1165
HY + NI +R K D R+ + GA + R E++G + + ++GD +
Sbjct: 302 HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGD-EYF 360
Query: 1166 VFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAK 1345
F E +D TI+LRG++ ++ ++ER + D + + + D +LVPGGGA+E+ +A
Sbjct: 361 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 420
Query: 1346 QITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLD 1525
+T + G+EQ+ + A+A E IPR L +N G +++ L A H + N
Sbjct: 421 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCET-WG 479
Query: 1526 IEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+ E + DM E G+ + K K A AV +LR+D I+
Sbjct: 480 VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 523
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 189 bits (480), Expect = 4e-48
Identities = 141/522 (27%), Positives = 241/522 (46%), Gaps = 10/522 (1%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K D E LL T++ SK + AF AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKKE--DKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKET-----EGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E + IA+ +
Sbjct: 185 ML---DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ +++ I +GA VV++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 301
Query: 992 YANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVF 1171
Y ++ + DL+R G + + + +G C +++G + F
Sbjct: 302 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFF 361
Query: 1172 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 1351
+ TI+LRG + M++ ER++ D + + ++ +V GGGA E+EL+K +
Sbjct: 362 TGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1352 TSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIE 1531
Y T PG +Q I +A+A E IPR L +N+G A +++KL A H +G G+DI
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 480
Query: 1532 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
E + D EA V + + + A+ A+ AA ++ VD+ I
Sbjct: 481 NE--DIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 520
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
Length = 487
Score = 173 bits (439), Expect = 2e-43
Identities = 140/499 (28%), Positives = 233/499 (46%), Gaps = 6/499 (1%)
Frame = +2
Query: 176 NIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASH 355
+I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++V S
Sbjct: 2 HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSK 61
Query: 356 MQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSA 535
Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 62 SQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXXTTLGS 121
Query: 536 KNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV-CKIX 706
K V + H +A++ A +++ D +VD I+V K+
Sbjct: 122 K-------VVNSCHRQ-----------MAEIAVNAVLTV-ADMQRRDVDFELIKVEGKVG 162
Query: 707 XXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTAEELMN 883
+V K + + V+DAKIA+ +CPF+ +TK + + + E+
Sbjct: 163 GRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKA 222
Query: 884 FSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKT 1063
K E+ E ++ I +TGAN+ + D A H + N+ VR ++ +
Sbjct: 223 LQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIA 282
Query: 1064 VGATALPRLTPPVLEEMGHCDSVYLSEVGDT--QVVVFKHEKEDGAISTIVLRGSTDNLM 1237
G +PR + E++G V G T +++V + K A+ TI +RG ++
Sbjct: 283 TGGRIVPRFSELTPEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV-TIFIRGGNKMII 341
Query: 1238 DDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAF 1417
++ +R++ D + + L RD R+V GGGA EI A ++ + ++ A
Sbjct: 342 EEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKVKRGDRXXXXXXXXAL 401
Query: 1418 ESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKY 1597
E IP ALAENSG+ + ++++ A Q N L I+ DM + V++T +GK
Sbjct: 402 EVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKK 460
Query: 1598 WAIKLATNAAVTVLRVDQI 1654
I LAT +L++D I
Sbjct: 461 QQISLATQMVRMILKIDDI 479
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,100,731
Number of extensions: 1026606
Number of successful extensions: 3110
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3086
Number of HSP's successfully gapped: 19
Length of query: 587
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 483
Effective length of database: 8,754,644
Effective search space: 4228493052
Effective search space used: 4228493052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012797
(1762 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus]. 956 0.0
Alignment gi|NP_941023.1| chaperonin containing TCP1, subunit 8 (theta)-l... 232 8e-61
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 215 8e-56
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 212 9e-55
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 202 5e-52
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 195 8e-50
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 187 3e-47
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 187 3e-47
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 165 9e-41
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 153 4e-37
>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
Length = 548
Score = 956 bits (2470), Expect = 0.0
Identities = 487/548 (88%), Positives = 503/548 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLK+GAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVIN L
Sbjct: 1 MALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVI GYEIAC+KAHEILP+LVCCSAKNLRDVDEVSSLL TS+MSKQYG+E FLA
Sbjct: 121 IGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSETFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSG+FNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGNFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM+AQV+AIA TGANV+VTGGKVAD+
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADI 300
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALP+LTPPV EEMGHCDSVYLSEVGDTQV
Sbjct: 301 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMGHCDSVYLSEVGDTQV 360
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 361 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 420
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGETCPGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLY+VHQEGNKNVGL
Sbjct: 421 KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGL 480
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEA +LDTYLGKYWAIKLATNAAVTVLRVDQIIM +
Sbjct: 481 DIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKK 540
Query: 1703 NWDDDQND 1726
+WDDDQND
Sbjct: 541 DWDDDQND 548
>ref|NP_941023.1| chaperonin containing TCP1, subunit 8 (theta)-like 1 [Mus musculus].
Length = 562
Score = 232 bits (591), Expect = 8e-61
Identities = 153/499 (30%), Positives = 249/499 (49%), Gaps = 1/499 (0%)
Frame = +2
Query: 167 VYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVM 346
+ R A + LA R+ YGP G K ++ + T AA IL+ L+++HPAA+ +
Sbjct: 42 ILRATAAAQTLASIIRSCYGPFGRQKFLVTAKGETVCTGHAAAILKALDLEHPAAQFVQE 101
Query: 347 ASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVC 526
+ Q + GDGT FV++ GL+ +++ E + A + LP L
Sbjct: 102 LAQTQVENAGDGTVFVVLLTEALLEQAHYLLWAGLTPTQLREAFATATAEVLTALPSL-- 159
Query: 527 CSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKIX 706
+ ++L +++ S L++ + + N +L KL+AQAC +G F ++I VC +
Sbjct: 160 -AIRSLGPLEDPSWALYSVISTHTLSNSDYLTKLVAQACWVSREPNGSFKPESIVVCVLQ 218
Query: 707 XXXXXXXXXXXXMVFKKETEGDVTSVK-DAKIAVYSCPFDGMITETKGTVLIKTAEELMN 883
+ + G T V DA++A+++CPF T T + EEL+
Sbjct: 219 GGKLTDSRIFPGVAIAGKLCGQKTEVLGDARVALFNCPFGPTNPFTLATPRLSNPEELLR 278
Query: 884 FSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKT 1063
F K E + E ++ +A NV V G+V + ++ AN IM+++ S+ ++ L +
Sbjct: 279 FRKQTEQV-EKEIAQLAIMDINVAVVLGEVNEKSVDQANYCGIMVIQAKSRKEIVYLSEK 337
Query: 1064 VGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDD 1243
+G L R+ PP+ E G C VY E GDT VV+F+ E E ++VLRG T +
Sbjct: 338 LGTPLLGRVLPPL--EPGKCHKVYRKEFGDTAVVMFEWEHEIAPFLSVVLRGPTIQGLRV 395
Query: 1244 IERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFES 1423
E+AV G++ F L +D RL+PG GATE+ LAK + G G A + FA+A S
Sbjct: 396 AEQAVYYGIDAFSQLCQDPRLLPGAGATEMALAKMLVDKGSRLSGPNGLAFQAFAQALSS 455
Query: 1424 IPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWA 1603
+P+ LAEN+G+ A V+++L HQ GN VG+ + V ++ G+ D K
Sbjct: 456 LPKTLAENAGLAAQSVMAELSGFHQAGNFFVGVGTDGLV----NVTHEGIWDILRTKAQG 511
Query: 1604 IKLATNAAVTVLRVDQIIM 1660
++ ++ VDQII+
Sbjct: 512 LQAVAELVQQLVTVDQIIV 530
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 215 bits (548), Expect = 8e-56
Identities = 149/516 (28%), Positives = 263/516 (50%), Gaps = 21/516 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A ++++GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPDS---GHFNVDNIRVC 697
L D + + TS+ SK G N + A ++ A +++ + D+ + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEAGAMAVRRVLKRDLKH 318
Query: 1052 LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
+ K GA+ L L EE +G + V + D ++++ K+ K + S I+L
Sbjct: 319 VAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 377
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG+ D + D++ER++ D + K + K +VPGGGA E L+ + +Y + EQ A
Sbjct: 378 RGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALSIYLENYATSMGSREQLA 437
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 1549
I +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKP-- 495
Query: 1550 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 496 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 212 bits (539), Expect = 9e-55
Identities = 140/506 (27%), Positives = 251/506 (49%), Gaps = 10/506 (1%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSKQYGN-EAFLAKLIAQACVSIFPDSGHFNVD--NIRVCK 700
L D + + + TS+ SK + L+ + A + + + +VD +I++ K
Sbjct: 153 RPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVK 212
Query: 701 IXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEEL 877
+V +K +T V+ AKI + T+ +++ ++
Sbjct: 213 KLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQM 272
Query: 878 MNFSKGEENLMEAQVQAIADTGANVVVTGGKV-----ADMALHYANKYNIMLVRLNSKWD 1042
+ E + V+ I TG NV++ + +D+ALH+ NK IM+V+ + D
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDVERED 332
Query: 1043 LRRLCKTVGATALPRLTPPVLEEMGHCD-SVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 1219
+ +CKT+G + + + +G + + +S G ++ G TIV+RG
Sbjct: 333 IEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRG 392
Query: 1220 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 1399
S ++++ ER++ D + + L + + L+ GGGA EIELA ++T Y T G+E Y ++
Sbjct: 393 SNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVR 452
Query: 1400 KFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 1579
FA+A E IP LAEN+G+ +++L H +G K G+++ + ++LE V+
Sbjct: 453 AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRK--GGISNILEEMVVQ 510
Query: 1580 TYLGKYWAIKLATNAAVTVLRVDQII 1657
L A+ LAT ++L++D ++
Sbjct: 511 PLLVSVSALTLATETVRSILKIDDVV 536
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 202 bits (515), Expect = 5e-52
Identities = 151/507 (29%), Positives = 250/507 (49%), Gaps = 9/507 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T RT+ GPNG++KM+++ + +TND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A + L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTS--VMSKQYGNEAF--LAKLIAQACVSIFPDSGHFNVDN- 685
S K L D++ L+ T+ + + N +A++ A +++ D +VD
Sbjct: 152 ---SDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTV-ADMERRDVDFE 207
Query: 686 -IRV-CKIXXXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVL 856
I+V K+ +V K + + V DAKIA+ +CPF+ +TK +
Sbjct: 208 LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLD 267
Query: 857 IKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSK 1036
+ + E+ K E+ E ++ I +TGAN+ + D A H + + VR
Sbjct: 268 VMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGG 327
Query: 1037 WDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEK-EDGAISTIVL 1213
++ + G +PR + E++G V G T+ + EK ++ TI +
Sbjct: 328 PEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFI 387
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG ++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA
Sbjct: 388 RGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYA 447
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGV 1573
++ FA+A E IP AL+ENSG+ + ++++ A Q N L I+ DM V
Sbjct: 448 MRAFADALEVIPMALSENSGMNPIQTMTEVRA-RQVKESNPALGIDCLHKGSNDMQYQHV 506
Query: 1574 LDTYLGKYWAIKLATNAAVTVLRVDQI 1654
++T +GK I LAT +L++D I
Sbjct: 507 IETLIGKKQQISLATQMVRMILKIDDI 533
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 195 bits (496), Expect = 8e-50
Identities = 141/522 (27%), Positives = 245/522 (46%), Gaps = 10/522 (1%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K +D E +L T++ SK + F AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKK--QDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVM 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKET-----EGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E K+ KIA+ +
Sbjct: 185 ML---DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ +++ I +GA V+++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQ 301
Query: 992 YANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVF 1171
Y ++ + DL+R G + + V + +GHC +++G + F
Sbjct: 302 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIGGERYNFF 361
Query: 1172 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 1351
+ TI+LRG + M++ ER++ D + + ++ +V GGGA E+EL+K +
Sbjct: 362 TGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1352 TSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIE 1531
Y T PG +Q I +A+A E IPR L +N+G A +++KL A H +G G+DI
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDIN 480
Query: 1532 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
E + D +A V + + + A+ A+ AA ++ VD+ I
Sbjct: 481 NE--NIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETI 520
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 187 bits (474), Expect = 3e-47
Identities = 146/530 (27%), Positives = 248/530 (46%), Gaps = 18/530 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127
Query: 482 IACRKAHEILPDLVCCSAKNLRDVD-----EVSSLLHTSVMSKQYGNEAFLAKLIAQACV 646
+A L D++ K VD + S++++S+ +K + LA IA V
Sbjct: 128 MA-------LDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 647 SI--FPDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDA 793
F ++G +D RV KI ++ K DVT +K+
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNP 236
Query: 794 KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKV 973
+I + + E++ + I E+ + EE + + I +VV+T +
Sbjct: 237 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGI 296
Query: 974 ADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMG-HCDSVYLSEVG 1150
+D+A HY + N+ +R K D R+ + GA + R +++G + + ++G
Sbjct: 297 SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIG 356
Query: 1151 DTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATE 1330
D + F + +D TI+LRG++ ++ ++ER + D + + + D +LVPGGGA+E
Sbjct: 357 D-EYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASE 415
Query: 1331 IELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVH-QEGN 1507
+ +A +T + G+EQ+ + A+A E IPR L +N G +++ L A H QE
Sbjct: 416 MAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESC 475
Query: 1508 KNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+ G + E + DM E G+ + K K A AV +LR+D I+
Sbjct: 476 ETWG--VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 523
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 187 bits (474), Expect = 3e-47
Identities = 146/530 (27%), Positives = 248/530 (46%), Gaps = 18/530 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127
Query: 482 IACRKAHEILPDLVCCSAKNLRDVD-----EVSSLLHTSVMSKQYGNEAFLAKLIAQACV 646
+A L D++ K VD + S++++S+ +K + LA IA V
Sbjct: 128 MA-------LDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 647 SI--FPDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDA 793
F ++G +D RV KI ++ K DVT +K+
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNP 236
Query: 794 KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKV 973
+I + + E++ + I E+ + EE + + I +VV+T +
Sbjct: 237 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGI 296
Query: 974 ADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMG-HCDSVYLSEVG 1150
+D+A HY + N+ +R K D R+ + GA + R +++G + + ++G
Sbjct: 297 SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIG 356
Query: 1151 DTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATE 1330
D + F + +D TI+LRG++ ++ ++ER + D + + + D +LVPGGGA+E
Sbjct: 357 D-EYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASE 415
Query: 1331 IELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVH-QEGN 1507
+ +A +T + G+EQ+ + A+A E IPR L +N G +++ L A H QE
Sbjct: 416 MAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESC 475
Query: 1508 KNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+ G + E + DM E G+ + K K A AV +LR+D I+
Sbjct: 476 ETWG--VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 523
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 165 bits (418), Expect = 9e-41
Identities = 126/493 (25%), Positives = 226/493 (45%), Gaps = 6/493 (1%)
Frame = +2
Query: 197 LAQTTRTAYGPNGMNKMVINHLEK--LFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 370
+ ++ GP GM+K++++ L VTND ATIL+ + V +PAAK++V S +Q+ E
Sbjct: 35 IGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 94
Query: 371 VGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHE-ILPDLVCCSAKNLR 547
VGDGT V V + +I G+ A + A E +L V + R
Sbjct: 95 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREALLSSAVDHGSDEAR 154
Query: 548 DVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRVCK-IXXXXXX 721
++ ++ T++ SK + KL +A + + G N++ I V K +
Sbjct: 155 FWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEAIHVIKKLGGSLAD 211
Query: 722 XXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKTAEELMNFSKGE 898
++ KK +++AKI + + D + G+ V + + ++ E
Sbjct: 212 SYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAE 271
Query: 899 ENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATA 1078
+ M+ +V+ I G N + + + +M + + RL G
Sbjct: 272 KEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEI 331
Query: 1079 LPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAV 1258
P L ++G C + +G+ +++ F G TIVLRG+T ++D+ ER++
Sbjct: 332 ASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-GEACTIVLRGATQQILDEAERSL 390
Query: 1259 DDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFESIPRAL 1438
D + +D R V GGG +E+ +A +T PG E A++ FA+A +P +
Sbjct: 391 HDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTII 450
Query: 1439 AENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLAT 1618
A+N+G + +++++L A H EG+ GLD++ + DM G+ +++ K + A
Sbjct: 451 ADNAGYDSADLVAQLRAAHSEGHITAGLDMKE--GTIGDMAVLGITESFQVKRQVLLSAA 508
Query: 1619 NAAVTVLRVDQII 1657
AA +LRVD II
Sbjct: 509 EAAEVILRVDNII 521
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 153 bits (387), Expect = 4e-37
Identities = 125/512 (24%), Positives = 220/512 (42%), Gaps = 12/512 (2%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
+ A+ NI A + L R GP G KM+++ + +T D +L E+++QHP A +
Sbjct: 17 QAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASI 76
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
I + Q+ GDGT ++ GL + EG+++A KA E+L D
Sbjct: 77 IAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVL-D 135
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRV 694
+ + R++ + + TS+ +K + A L + + + ++I ++ + +
Sbjct: 136 EIKVQKEMKREI--LLDVARTSLQTKVHAELADILTEAVVDSVLAIRRPGVPIDLFMVEI 193
Query: 695 CKIXXXXXXXXXXXXXMVFKKETEGDVT--SVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
++ +V V+DA I + + TE KT
Sbjct: 194 VEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYKTV 253
Query: 869 EELMNFSKGEENLMEAQVQAIADTGANVVVTGGK---------VADMALHYANKYNIMLV 1021
EE K E +E +VQ I D V K + ++L K+NI+ +
Sbjct: 254 EEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKHNIVAL 313
Query: 1022 RLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 1201
R + +L RL G A+ E +GH V+ +G+ + F + +
Sbjct: 314 RRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALGEEKFT-FIEDCVNPLSV 372
Query: 1202 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGL 1381
T++++G + + I+ A+ DG+ K D +VPG GA E+ +A+ + +Y G
Sbjct: 373 TLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGR 432
Query: 1382 EQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 1561
+ I+ FA+A IP+ LA+NSG E + K+ H E + +G+D+ P
Sbjct: 433 VRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKELLGIDLNTGEPMA--AA 490
Query: 1562 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
EAG+ D Y K + T A +L VD+I+
Sbjct: 491 EAGIWDNYCVKKHLLHSCTVIATNILLVDEIM 522
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,227,653
Number of extensions: 1411571
Number of successful extensions: 4265
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4239
Number of HSP's successfully gapped: 12
Length of query: 587
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 480
Effective length of database: 12,403,707
Effective search space: 5953779360
Effective search space used: 5953779360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012797
(1762 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens]. 978 0.0
Alignment gi|NP_055221.1| putative T-complex protein 1 subunit theta-like... 238 1e-62
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 222 1e-57
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 214 2e-55
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 211 2e-54
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 191 2e-48
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 190 4e-48
Alignment gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom... 166 8e-41
Alignment gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H... 161 2e-39
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 159 8e-39
>ref|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens].
Length = 548
Score = 978 bits (2529), Expect = 0.0
Identities = 499/548 (91%), Positives = 508/548 (92%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIACRKAHEILP+LVCCSAKNLRD+DEVSSLL TS+MSKQYGNE FLA
Sbjct: 121 IGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM+AQV+AIADTGANVVVTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADM 300
Query: 983 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 1162
ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV
Sbjct: 301 ALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQV 360
Query: 1163 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 1342
VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
Sbjct: 361 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA 420
Query: 1343 KQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 1522
KQITSYGETCPGLEQYAIKKFAEAFE+IPRALAENSGVKANEVISKLYAVHQEGNKNVGL
Sbjct: 421 KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGL 480
Query: 1523 DIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMXXXXXXXXXXXXXE 1702
DIEAEVPAVKDMLEAG+LDTYLGKYWAIKLATNAAVTVLRVDQIIM +
Sbjct: 481 DIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKK 540
Query: 1703 NWDDDQND 1726
+WDDDQND
Sbjct: 541 DWDDDQND 548
>ref|NP_055221.1| putative T-complex protein 1 subunit theta-like 2 [Homo sapiens].
Length = 557
Score = 238 bits (608), Expect = 1e-62
Identities = 151/502 (30%), Positives = 250/502 (49%), Gaps = 1/502 (0%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
E + ++ A + LA R YGP+G K ++ + T A ILR LE++HPAA +
Sbjct: 30 EPHLLSSLAAVQTLASVIRPCYGPHGRQKFLVTMKGETVCTGCATAILRALELEHPAAWL 89
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
+ A Q + GDGT FV++ + GL ++ E Y A + LP
Sbjct: 90 LREAGQTQAENSGDGTAFVVLLTEALLEQAEQLLKAGLPRPQLREAYATATAEVLATLPS 149
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVC 697
L + ++L +++ S LH+ + + L KL+A AC +I G F + + VC
Sbjct: 150 L---AIQSLGPLEDPSWALHSVMNTHTLSPMDHLTKLVAHACWAIKELDGSFKPERVGVC 206
Query: 698 KIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYSCPFDGMITETKGTVLIKTAEE 874
+ + + G + +V A++A+++CPF T + + +
Sbjct: 207 ALPGGTLEDSCLLPGLAISGKLCGQMATVLSGARVALFACPFGPAHPNAPATARLSSPAD 266
Query: 875 LMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRL 1054
L FSKG + L+E QV +A G NV V G+V + L A+KY I++++ S ++ L
Sbjct: 267 LAQFSKGSDQLLEKQVGQLAAAGINVAVVLGEVDEETLTLADKYGIVVIQARSWMEIIYL 326
Query: 1055 CKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNL 1234
+ + LPRL PP + G C VY E+GD VVF+ E T+VLRG+T
Sbjct: 327 SEVLDTPLLPRLLPP--QRPGKCQRVYRQELGDGLAVVFEWECTGTPALTVVLRGATTQG 384
Query: 1235 MDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEA 1414
+ E+AV G++ + L +D RL+PG GATE+ LAK ++ G G A FA A
Sbjct: 385 LRSAEQAVYHGIDAYFQLCQDPRLIPGAGATEMALAKMLSDKGSRLEGPSGPAFLAFAWA 444
Query: 1415 FESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGK 1594
+ +P+ LAEN+G+ ++V++++ VHQ GN +G+ E + ++ + GV DT + K
Sbjct: 445 LKYLPKTLAENAGLAVSDVMAEMSGVHQGGNLLMGVGTE----GIINVAQEGVWDTLIVK 500
Query: 1595 YWAIKLATNAAVTVLRVDQIIM 1660
+ + ++ VD+I++
Sbjct: 501 AQGFRAVAEVVLQLVTVDEIVV 522
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 222 bits (565), Expect = 1e-57
Identities = 152/516 (29%), Positives = 260/516 (50%), Gaps = 21/516 (4%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI----FPDSGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A ++I + V+++ +
Sbjct: 140 TDELGR-DCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 1051
+L + E ++ + ++Q I TGANV++T G + DM L Y + M VR K DL+R
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKR 318
Query: 1052 LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 1213
+ K GAT L L EE +G + V + D ++++ K+ K + S I+L
Sbjct: 319 IAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 377
Query: 1214 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 1393
RG+ D + D++ER++ D + K + K +VPGGGA E L+ + +Y + EQ A
Sbjct: 378 RGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 437
Query: 1394 IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 1549
I +FA + IP LA N+ + ++++KL A H E N +GLD+ P
Sbjct: 438 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKP-- 495
Query: 1550 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+D +AGV + + K ++K AT AA+T+LR+D +I
Sbjct: 496 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 531
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 214 bits (545), Expect = 2e-55
Identities = 154/504 (30%), Positives = 249/504 (49%), Gaps = 6/504 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T RT+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDN--IRV 694
+++D + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 1048
E+ K E+ E +Q I +TGAN+ + D A H + N+ VR ++
Sbjct: 272 EDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 331
Query: 1049 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQ--VVVFKHEKEDGAISTIVLRGS 1222
+ G +PR + E++G V G T+ ++V + K A+ TI +RG
Sbjct: 332 LIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAV-TIFIRGG 390
Query: 1223 TDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK 1402
++++ +R++ D + + L RD R+V GGGA EI A ++ + CP LEQYA++
Sbjct: 391 NKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRA 450
Query: 1403 FAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT 1582
FA+A E IP AL+ENSG+ + ++++ A Q N L I+ DM + V++T
Sbjct: 451 FADALEVIPMALSENSGMNPIQTMTEVRA-RQVKEMNPALGIDCLHKGTNDMKQQHVIET 509
Query: 1583 YLGKYWAIKLATNAAVTVLRVDQI 1654
+GK I LAT +L++D I
Sbjct: 510 LIGKKQQISLATQMVRMILKIDDI 533
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 211 bits (537), Expect = 2e-54
Identities = 138/506 (27%), Positives = 253/506 (50%), Gaps = 10/506 (1%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSKQYGN-EAFLAKLIAQACVSIFPDSGHFNVD--NIRVCK 700
L D + + + TS+ SK + L+ + A + + + +VD +I++ K
Sbjct: 153 RPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVK 212
Query: 701 IXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEEL 877
+V +K + +T V+ AKI + T+ +++ ++
Sbjct: 213 KLGGTIDDCELVEGLVLTQKVSNSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQM 272
Query: 878 MNFSKGEENLMEAQVQAIADTGANVVVTGGKV-----ADMALHYANKYNIMLVRLNSKWD 1042
+ E + V+ I TG NV++ + +D+ALH+ NK IM+++ + D
Sbjct: 273 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIERED 332
Query: 1043 LRRLCKTVGATALPRLTPPVLEEMGHCD-SVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 1219
+ +CKT+G + + + +G + + ++ G +++ G TIV+RG
Sbjct: 333 IEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRG 392
Query: 1220 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 1399
S ++++ ER++ D + + L + + L+ GGGA EIELA ++T Y T G+E Y ++
Sbjct: 393 SNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVR 452
Query: 1400 KFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 1579
FA+A E IP LAEN+G+ +++L H +G K G+++ + ++LE V+
Sbjct: 453 AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRK--GGISNILEELVVQ 510
Query: 1580 TYLGKYWAIKLATNAAVTVLRVDQII 1657
L A+ LAT ++L++D ++
Sbjct: 511 PLLVSVSALTLATETVRSILKIDDVV 536
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 191 bits (485), Expect = 2e-48
Identities = 146/529 (27%), Positives = 251/529 (47%), Gaps = 17/529 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAY- 126
Query: 482 IACRKAHEILPDLVCCSAK-----NLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACV 646
RKA L D++ K ++ D D + +++++S+ +K + LA IA V
Sbjct: 127 ---RKA---LDDMISTLKKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180
Query: 647 SI--FPDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDA 793
+ F ++G +D RV KI ++ K DVT +K+
Sbjct: 181 KMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNP 236
Query: 794 KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKV 973
+I + + E++ + I E+ + EE ++ + I +VV+T +
Sbjct: 237 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI 296
Query: 974 ADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMG-HCDSVYLSEVG 1150
+D+A HY + NI +R K D R+ + GA + R +++G + + ++G
Sbjct: 297 SDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIG 356
Query: 1151 DTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATE 1330
D + F + +D TI+LRG++ ++ ++ER + D + + + D +LVPGGGA+E
Sbjct: 357 D-EYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASE 415
Query: 1331 IELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNK 1510
+ +A +T + G+EQ+ + A+A E IPR L +N G +++ L A H + N
Sbjct: 416 MAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENC 475
Query: 1511 NVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
+ E + DM E G+ + K K A AV +LR+D I+
Sbjct: 476 ET-WGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 523
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 190 bits (482), Expect = 4e-48
Identities = 141/522 (27%), Positives = 241/522 (46%), Gaps = 10/522 (1%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K D E LL T++ SK + AF AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKK--ADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKET-----EGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E + KIA+ +
Sbjct: 185 ML---DDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ +++ I +GA VV++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQ 301
Query: 992 YANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVF 1171
Y ++ + DL+R G + + + +G C +++G + F
Sbjct: 302 YFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFF 361
Query: 1172 KHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQI 1351
+ T +LRG + M++ ER++ D + + ++ +V GGGA E+EL+K +
Sbjct: 362 TGCPK-AKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420
Query: 1352 TSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIE 1531
Y T PG +Q I +A+A E IPR L +N+G A +++KL A H +G G+DI
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDIN 480
Query: 1532 AEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 1657
E + D EA V + + + A+ A+ AA ++ VD+ I
Sbjct: 481 NE--DIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 520
>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
Length = 535
Score = 166 bits (419), Expect = 8e-41
Identities = 124/493 (25%), Positives = 226/493 (45%), Gaps = 6/493 (1%)
Frame = +2
Query: 197 LAQTTRTAYGPNGMNKMVINHLE--KLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 370
+ ++ GP GM+K++++ L VTND ATIL+ + V +PAAK++V S +Q+ E
Sbjct: 35 IGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 94
Query: 371 VGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHE-ILPDLVCCSAKNLR 547
VGDGT V V + +I G+ A + A E +L V + ++
Sbjct: 95 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVK 154
Query: 548 DVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRVCK-IXXXXXX 721
++ ++ T++ SK + KL +A + + G N++ I + K +
Sbjct: 155 FRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEAIHIIKKLGGSLAD 211
Query: 722 XXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKTAEELMNFSKGE 898
++ KK +++AKI + + D + G+ V + + ++ E
Sbjct: 212 SYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAE 271
Query: 899 ENLMEAQVQAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATA 1078
+ M+ +V+ I G N + + + +M + + RL G
Sbjct: 272 KEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEI 331
Query: 1079 LPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAV 1258
P L ++G C + +G+ +++ F G TIVLRG+T ++D+ ER++
Sbjct: 332 ASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-GEACTIVLRGATQQILDEAERSL 390
Query: 1259 DDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFESIPRAL 1438
D + +D R V GGG +E+ +A +T PG E A++ +A+A +P +
Sbjct: 391 HDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTII 450
Query: 1439 AENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLAT 1618
A+N+G + +++++L A H EGN GLD+ + DM G+ +++ K + A
Sbjct: 451 ADNAGYDSADLVAQLRAAHSEGNTTAGLDMRE--GTIGDMAILGITESFQVKRQVLLSAA 508
Query: 1619 NAAVTVLRVDQII 1657
AA +LRVD II
Sbjct: 509 EAAEVILRVDNII 521
>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
Length = 499
Score = 161 bits (407), Expect = 2e-39
Identities = 125/484 (25%), Positives = 219/484 (45%), Gaps = 10/484 (2%)
Frame = +2
Query: 236 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXX 415
M+K++++ K ++ND ATIL+ L+V HPAAK +V + Q+ EVGDGT V +
Sbjct: 1 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60
Query: 416 XXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TS 583
GL +I + A + A + ++ K D E LL T+
Sbjct: 61 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKK--ADKVEQRKLLEKCAMTA 118
Query: 584 VMSKQYGNE-AFLAKLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKE 760
+ SK + AF AK++ A + + + I + K+ + FKK
Sbjct: 119 LSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKT 175
Query: 761 T-----EGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVQ 925
E + KIA+ + + + + + T E+ E N++ +++
Sbjct: 176 FSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLE 235
Query: 926 AIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVL 1105
I +GA VV++ + D+A Y ++ + DL+R G + +
Sbjct: 236 KIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSA 295
Query: 1106 EEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKV 1285
+ +G C +++G + F + T +LRG + M++ ER++ D + +
Sbjct: 296 DVLGRCQVFEETQIGGERYNFFTGCPK-AKTCTFILRGGAEQFMEETERSLHDAIMIVRR 354
Query: 1286 LTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFESIPRALAENSGVKAN 1465
++ +V GGGA E+EL+K + Y T PG +Q I +A+A E IPR L +N+G A
Sbjct: 355 AIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDAT 414
Query: 1466 EVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRV 1645
+++KL A H +G G+DI E + D EA V + + + A+ A+ AA ++ V
Sbjct: 415 NILNKLRARHAQGGTWYGVDINNE--DIADNFEAFVWEPAMVRINALTAASEAACLIVSV 472
Query: 1646 DQII 1657
D+ I
Sbjct: 473 DETI 476
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 159 bits (402), Expect = 8e-39
Identities = 124/506 (24%), Positives = 221/506 (43%), Gaps = 12/506 (2%)
Frame = +2
Query: 176 NIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASH 355
NI A + L RT GP G KM+++ + +T D +L E+++QHP A +I +
Sbjct: 23 NICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVAT 82
Query: 356 MQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSA 535
Q+ GDGT ++ GL + EG+E A KA E+L ++
Sbjct: 83 AQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKE 142
Query: 536 KNLRDVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRVCKIXXX 712
+ + +V+ TS+ +K + A L +++ + +++ ++ + + ++
Sbjct: 143 MKRKILLDVA---RTSLQTKVHAELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHK 199
Query: 713 XXXXXXXXXXMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNF 886
+V V+DA I + + + TE KTAEE
Sbjct: 200 LGTDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKL 259
Query: 887 SKGEENLMEAQVQAIADTGANVVVTGGK---------VADMALHYANKYNIMLVRLNSKW 1039
K E +E +VQ I D V K + +L K+ I+ +R +
Sbjct: 260 VKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRR 319
Query: 1040 DLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 1219
++ RL G A+ ++ +GH VY +G+ + F E + T++++G
Sbjct: 320 NMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLGE-EKFTFIEECVNPCSVTLLVKG 378
Query: 1220 STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 1399
+ + ++ A+ DG+ K D +VPG GA E+ +A+ + +Y + G + ++
Sbjct: 379 PNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQ 438
Query: 1400 KFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD 1579
FA+A IP+ LA+N+G E + K+ A H E + VG+D+ P V +AGV D
Sbjct: 439 AFADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQLVGVDLNTGEPMV--AADAGVWD 496
Query: 1580 TYLGKYWAIKLATNAAVTVLRVDQII 1657
Y K + T A +L VD+I+
Sbjct: 497 NYCVKKQLLHSCTVIATNILLVDEIM 522
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,735,011
Number of extensions: 1646843
Number of successful extensions: 4947
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4911
Number of HSP's successfully gapped: 21
Length of query: 587
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 479
Effective length of database: 14,737,052
Effective search space: 7059047908
Effective search space used: 7059047908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012797
(1762 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 359 3e-96
>Sscrofa_Chr13
|| Length = 218635234
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 464 gtcatagaaggttatgaaatagcctgcagaaaagcccatgagattcttcctgacttggtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202719139 gtcatagaaggttatgaaatagcctgcagaaaagcccatgagattcttcctgacttggtg 202719080
Query: 524 tgttgttctgcaaaaaatctccgggatgttgatgaagtgtcatctctacttcatacctca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202719079 tgttgttctgcaaaaaatctccgggatgttgatgaagtgtcatctctacttcatacctca 202719020
Query: 584 gtaatgagtaagcagtatggcaatgaagcgtttctggccaagctcattgctcaggcatgt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202719019 gtaatgagtaagcagtatggcaatgaagcgtttctggccaagctcattgctcaggcatgt 202718960
Query: 644 g 644
|
Sbjct: 202718959 g 202718959
Score = 345 bits (174), Expect = 5e-92
Identities = 180/182 (98%)
Strand = Plus / Minus
Query: 843 agggaacagtactgataaagactgctgaagaattgatgaactttagtaagggagaagaaa 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202716688 agggaacagtactgataaagactgctgaagaattgatgaactttagtaagggagaagaaa 202716629
Query: 903 atctcatggaggcgcaagttcaagctattgctgatactggtgcaaatgttgtagtaacag 962
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202716628 atctcatggaggcgcaagtcaaagctattgctgatactggtgcaaatgttgtagtaacag 202716569
Query: 963 gaggcaaagtggcggacatggctcttcattatgcaaacaaatacaatatcatgttggtga 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202716568 gaggcaaagtggcggacatggctcttcattatgcaaacaaatacaatatcatgttggtga 202716509
Query: 1023 gg 1024
||
Sbjct: 202716508 gg 202716507
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 1365 agacatgtcctggacttgaacagtatgccattaagaagtttgctgaggcatttgaatcta 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202714559 agacatgtcctggacttgaacagtatgccattaagaagtttgctgaggcatttgaatcta 202714500
Query: 1425 ttccccgggcactggcagaaaactctggagttaaggccaatgaagtaatctctaaacttt 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202714499 ttccccgggcactggcagaaaactctggagttaaggccaatgaagtaatctctaaacttt 202714440
Query: 1485 atgcagtacatcaagaaggaaataaaaatgttggattagatattgagg 1532
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202714439 atgcagtacatcaagaaggaaataaaaatgttggattagatattgagg 202714392
Score = 285 bits (144), Expect = 4e-74
Identities = 150/152 (98%)
Strand = Plus / Minus
Query: 314 gtacagcatcctgctgcaaaaatgatcgtaatggcctctcacatgcaggagcaggaggtt 373
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 202720405 gtacagcatcctgctgcaaaaatgattgtaatggcctctcacatgcaggagcaggaggtt 202720346
Query: 374 ggagatggcacgaattttgttctggtttttgctggagctcttctggaattagctgaagag 433
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202720345 ggagatggcacaaattttgttctggtttttgctggagctcttctggaattagctgaagag 202720286
Query: 434 cttctgagaattggcctgtcagtttcagaagt 465
||||||||||||||||||||||||||||||||
Sbjct: 202720285 cttctgagaattggcctgtcagtttcagaagt 202720254
Score = 270 bits (136), Expect = 2e-69
Identities = 139/140 (99%)
Strand = Plus / Minus
Query: 706 gggctctggtgtccattcctcttcagtattgcatggcatggtttttaagaaggaaaccga 765
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202717913 gggctctggtgtccattcttcttcagtattgcatggcatggtttttaagaaggaaaccga 202717854
Query: 766 aggtgatgtaacatctgtcaaagatgcaaaaatagcagtgtactcttgtccttttgatgg 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202717853 aggtgatgtaacatctgtcaaagatgcaaaaatagcagtgtactcttgtccttttgatgg 202717794
Query: 826 catgataacagaaacaaagg 845
||||||||||||||||||||
Sbjct: 202717793 catgataacagaaacaaagg 202717774
Score = 258 bits (130), Expect = 9e-66
Identities = 139/142 (97%)
Strand = Plus / Minus
Query: 1 cgttcccaggaggctgtgcgcgcccctcacttcctccgggatcttctgagcgggcgcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202726004 cgttcccaggaggctgtgcgcgcccctcacttcctccgggatcttctgagcgggcgcgtg 202725945
Query: 61 aatagctacctgctgtgtggcaatggcgcttcacgtccccaaggctccgggctttgccca 120
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202725944 aatagctacctgccgtctggccatggcgcttcacgtccccaaggctccgggctttgccca 202725885
Query: 121 gatgctcaaagaaggagcgaag 142
||||||||||||||||||||||
Sbjct: 202725884 gatgctcaaagaaggagcgaag 202725863
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1530 aggctgaagttcctgctgtaaaggacatgttggaagctggtgttctagatacttacctgg 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202714153 aggctgaagttcctgctgtaaaggacatgttggaagctggtgttctagatacttacctgg 202714094
Query: 1590 gaaaatactgggctatcaaactggctacgaatgctgctgtcactgtacttagagtggatc 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202714093 gaaaatactgggctatcaaactggctacgaatgctgctgtcactgtacttagagtggatc 202714034
Query: 1650 ag 1651
||
Sbjct: 202714033 ag 202714032
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1178 gaaaaggaagatggtgccatttccaccatagtgcttcgaggctcaacagacaatctgatg 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202715557 gaaaaggaagatggtgccatttccaccatagtgcttcgaggctcaacagacaatctgatg 202715498
Query: 1238 gatgatatagaaagggcagttgatgatggtgttaatactttcaaagttctcacaaggg 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202715497 gatgatatagaaagggcagttgatgatggtgttaatactttcaaagttctcacaaggg 202715440
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 141 agcatttttcaggtttagaagaggctgtctacaggaacatacaggcttgcaaggagcttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202723382 agcatttttcaggtttagaagaggctgtctacaggaacatacaggcttgcaaggagcttg 202723323
Query: 201 cccaaacgactcgtacagcatatggaccaaatgg 234
||||||||||||||||||||||||||||||||||
Sbjct: 202723322 cccaaacgactcgtacagcatatggaccaaatgg 202723289
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1090 gactccccctgtccttgaagaaatgggacattgtgacagtgtttacctctcagaggttgg 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202715732 gactccccctgtccttgaagaaatgggacattgtgacagtgtttacctctcagaggttgg 202715673
Query: 1150 agatacgcaggtggttgtttttaagcacg 1178
|||||||||||||||||||||||||||||
Sbjct: 202715672 agatacgcaggtggttgtttttaagcacg 202715644
Score = 174 bits (88), Expect = 1e-40
Identities = 112/116 (96%), Gaps = 3/116 (2%)
Strand = Plus / Minus
Query: 1649 cagatcatcatggcaaaaccagctggtgggcctaagcctcccaagtggaaagaaa-actg 1707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 202710577 cagatcatcatggcaaaaccagctggtgggcctaagcct-ccaagtggaaagaaagactg 202710519
Query: 1708 ggatgatgaccaaaatgattgaatggctttaa-ttttactctaagcaaaggctgta 1762
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 202710518 ggatgatgaccaaaatgattgaatggctttaatttttactctaggcaaaggctgta 202710463
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 233 ggaatgaacaaaatggtcatcaaccacctggagaagttgtttgtgacaaatgatgcagca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202722004 ggaatgaacaaaatggtcatcaaccacctggagaagttgtttgtgacaaatgatgcagca 202721945
Query: 293 actattttaagagagctggaagta 316
||||||||||||||||||||||||
Sbjct: 202721944 actattttaagagagctggaagta 202721921
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1294 ggataaacgtcttgtacctggaggtggagcaacagaaattgagttggccaaacagatcac 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202714725 ggataaacgtcttgtacctggaggtggagcaacagaaattgagttggccaaacagatcac 202714666
Query: 1354 atcatatggagag 1366
|||||||||||||
Sbjct: 202714665 atcatatggagag 202714653
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 1022 aggctgaactcaaaatgggatctcagaagactatgtaaaacagttggtgccacagccctt 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202715877 aggctgaactcaaaatgggatctcagaagactatgtaaaacagttggtgccacagccctt 202715818
Query: 1082 cctagattg 1090
|||||||||
Sbjct: 202715817 cctagattg 202715809
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 644 gtatctatctttcctgactctggccatttcaatgttgataacatcagagtttgtaagatt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202718848 gtatctatctttcctgactctggccatttcaatgttgataacatcagagtttgtaagatt 202718789
Query: 704 ctgg 707
||||
Sbjct: 202718788 ctgg 202718785
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,289,794
Number of extensions: 394
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 15
Length of query: 1762
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1740
Effective length of database: 2,808,408,574
Effective search space: 4886630918760
Effective search space used: 4886630918760
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)