Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012799
(1062 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535576.2| PREDICTED: similar to chaperonin containing TCP... 543 e-158
Alignment gi|XP_855953.1| PREDICTED: similar to chaperonin containing TCP... 543 e-155
Alignment gi|XP_856031.1| PREDICTED: similar to T-complex protein 1, thet... 373 e-107
Alignment gi|XP_539926.1| PREDICTED: similar to T-complex protein 1 [Cani... 128 1e-29
Alignment gi|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsi... 112 8e-25
Alignment gi|XP_862725.1| PREDICTED: similar to T-complex protein 1, alph... 107 2e-23
Alignment gi|XP_862705.1| PREDICTED: similar to T-complex protein 1, alph... 107 2e-23
Alignment gi|XP_862675.1| PREDICTED: similar to T-complex protein 1, alph... 107 2e-23
Alignment gi|XP_541181.1| PREDICTED: similar to T-complex protein 1, alph... 107 2e-23
Alignment gi|XP_862776.1| PREDICTED: similar to T-complex protein 1, alph... 105 6e-23
>ref|XP_535576.2| PREDICTED: similar to chaperonin containing TCP1, subunit 8 (theta)
isoform 1 [Canis familiaris].
Length = 548
Score = 543 bits (1400), Expect(2) = e-158
Identities = 276/311 (88%), Positives = 284/311 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIAC+KAHEILPDLVCCSAKNLRDVDEVS+LLHTS+MSKQYGNE FLA
Sbjct: 121 IGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSTLLHTSIMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVK+AKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKNAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM++ VKAIADTGANV+VTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDSQVKAIADTGANVIVTGGKVADM 300
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 301 ALHYANKYNIM 311
Score = 34.7 bits (78), Expect(2) = e-158
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 312 LVRLNSKWDLRRLCK 326
>ref|XP_855953.1| PREDICTED: similar to chaperonin containing TCP1, subunit 8 (theta)
isoform 2 [Canis familiaris].
Length = 314
Score = 543 bits (1400), Expect = e-155
Identities = 276/311 (88%), Positives = 284/311 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIAC+KAHEILPDLVCCSAKNLRDVDEVS+LLHTS+MSKQYGNE FLA
Sbjct: 121 IGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSTLLHTSIMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVK+AKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKNAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM++ VKAIADTGANV+VTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDSQVKAIADTGANVIVTGGKVADM 300
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 301 ALHYANKYNIM 311
>ref|XP_856031.1| PREDICTED: similar to T-complex protein 1, theta subunit
(TCP-1-theta) (CCT-theta) isoform 3 [Canis familiaris].
Length = 489
Score = 373 bits (958), Expect(2) = e-107
Identities = 210/311 (67%), Positives = 217/311 (69%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSE A I PD + N+R
Sbjct: 121 IGLSVSE-----------AMSIFPDSGHFNVDNIR------------------------- 144
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
VCKI MVFKKETEGDVTSVK+AKIA
Sbjct: 145 -----------------------VCKILGSGIYSSSVLHGMVFKKETEGDVTSVKNAKIA 181
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM++ VKAIADTGANV+VTGGKVADM
Sbjct: 182 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDSQVKAIADTGANVIVTGGKVADM 241
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 242 ALHYANKYNIM 252
Score = 34.7 bits (78), Expect(2) = e-107
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 253 LVRLNSKWDLRRLCK 267
>ref|XP_539926.1| PREDICTED: similar to T-complex protein 1 [Canis familiaris].
Length = 555
Score = 128 bits (321), Expect = 1e-29
Identities = 83/291 (28%), Positives = 137/291 (47%), Gaps = 1/291 (0%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
EE + ++ A + LA+ R YGP+G K+++ T AA IL+ LE++HPAA++
Sbjct: 30 EEHLLCSVPAAQTLARVIRPCYGPHGRQKLLVTARGTTVFTGSAAAILQALELEHPAARL 89
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
+ A+H Q + GDG FV++ R GL S++ E Y A + +LP
Sbjct: 90 LREAAHKQAESCGDGAAFVVLLAEALLQQAEHLLRAGLPRSQLREAYAAATAEVLALLPS 149
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVC 697
L S ++L +++ L++ + + +L KL+A AC + G F+ + + VC
Sbjct: 150 L---SIRSLGPLEDPFWALYSVMNTHSASQMDYLTKLVAHACWATKELDGSFHRERVGVC 206
Query: 698 KIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYSCPFDGMITETKGTVLIKTAEE 874
+ M + G V SV A++A++ C F T + ++ +
Sbjct: 207 TLRGGRLEDSCLLPGMALAAKPCGQVISVLHGARVALFVCAFGPASPNAPATARLSSSAD 266
Query: 875 LMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHYANKYHIMFGEA 1027
L F KG E L+E V + NVVV G + + L A+KY IM +A
Sbjct: 267 LTKFRKGSEQLIEKQVAQLVTASINVVVVWGNINENTLTLADKYGIMVIQA 317
>ref|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) isoform 2 [Canis
familiaris].
Length = 541
Score = 112 bits (279), Expect = 8e-25
Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 4/281 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T RT+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
+++D + + T++ SK + + + IA V D +VD I+V
Sbjct: 152 SDSVLVDIKDTEPLIQTAKTTLGSKVFSKKKDIMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V++AKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVENAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
E+ K E+ E ++ I +TGAN+ + D A H
Sbjct: 272 EDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANH 312
>ref|XP_862725.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 6 [Canis familiaris].
Length = 456
Score = 107 bits (267), Expect = 2e-23
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|XP_862705.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 5 [Canis familiaris].
Length = 433
Score = 107 bits (267), Expect = 2e-23
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|XP_862675.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 4 [Canis familiaris].
Length = 558
Score = 107 bits (267), Expect = 2e-23
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|XP_541181.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 1 [Canis familiaris].
Length = 556
Score = 107 bits (267), Expect = 2e-23
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|XP_862776.1| PREDICTED: similar to T-complex protein 1, alpha subunit
(TCP-1-alpha) (CCT-alpha) isoform 8 [Canis familiaris].
Length = 556
Score = 105 bits (263), Expect = 6e-23
Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A +++ + D + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDVRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVF--KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K +K + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESLLISGYALNCEKCNASMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,767,057
Number of extensions: 988860
Number of successful extensions: 2937
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 2916
Number of HSP's successfully gapped: 44
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012799
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012799
(1062 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028781.1| T-complex protein 1 subunit theta [Bos tauru... 545 e-159
Alignment gi|XP_002688812.1| PREDICTED: T-complex protein 1 subunit theta... 521 e-151
Alignment gi|XP_869134.1| PREDICTED: T-complex protein 1 subunit theta-li... 521 e-151
Alignment gi|XP_875999.1| PREDICTED: T-complex protein 1-like [Bos taurus]. 118 8e-27
Alignment gi|XP_002687026.1| PREDICTED: T-complex protein 1-like [Bos tau... 118 1e-26
Alignment gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru... 109 4e-24
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 106 3e-23
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 106 3e-23
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 106 3e-23
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 106 4e-23
>ref|NP_001028781.1| T-complex protein 1 subunit theta [Bos taurus].
Length = 548
Score = 545 bits (1404), Expect(2) = e-159
Identities = 278/311 (89%), Positives = 284/311 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+GLSVSEVIEGYEIAC+KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNE FLA
Sbjct: 121 LGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIK+AEELMNFSKGEENLM+A VKAIADTGANVVVTGG+VADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADM 300
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 301 ALHYANKYNIM 311
Score = 34.7 bits (78), Expect(2) = e-159
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 312 LVRLNSKWDLRRLCK 326
>ref|XP_002688812.1| PREDICTED: T-complex protein 1 subunit theta-like [Bos taurus].
Length = 545
Score = 521 bits (1342), Expect(2) = e-151
Identities = 269/311 (86%), Positives = 278/311 (89%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKA GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKALGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASH+QEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHVQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+GLSVSEVIEGYEIAC+KA PDLVCCSAKNL+DVDEV SLLHTSVMSKQYGNE FLA
Sbjct: 121 LGLSVSEVIEGYEIACKKAP---PDLVCCSAKNLQDVDEVLSLLHTSVMSKQYGNEVFLA 177
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 178 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 237
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIK+AEELMNFSKGEENLM+A VKAIADTGANV+VTGG+VADM
Sbjct: 238 VYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVIVTGGRVADM 297
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 298 ALHYANKYNIM 308
Score = 34.7 bits (78), Expect(2) = e-151
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 309 LVRLNSKWDLRRLCK 323
>ref|XP_869134.1| PREDICTED: T-complex protein 1 subunit theta-like isoform 1 [Bos
taurus].
Length = 545
Score = 521 bits (1342), Expect(2) = e-151
Identities = 269/311 (86%), Positives = 278/311 (89%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKA GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKALGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASH+QEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHVQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
+GLSVSEVIEGYEIAC+KA PDLVCCSAKNL+DVDEV SLLHTSVMSKQYGNE FLA
Sbjct: 121 LGLSVSEVIEGYEIACKKAP---PDLVCCSAKNLQDVDEVLSLLHTSVMSKQYGNEVFLA 177
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 178 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 237
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIK+AEELMNFSKGEENLM+A VKAIADTGANV+VTGG+VADM
Sbjct: 238 VYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVIVTGGRVADM 297
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 298 ALHYANKYNIM 308
Score = 34.7 bits (78), Expect(2) = e-151
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 309 LVRLNSKWDLRRLCK 323
>ref|XP_875999.1| PREDICTED: T-complex protein 1-like [Bos taurus].
Length = 534
Score = 118 bits (296), Expect = 8e-27
Identities = 88/322 (27%), Positives = 149/322 (46%), Gaps = 2/322 (0%)
Frame = +2
Query: 98 PKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFV 277
P AP + L KH + ++ A LA+ R YGP G K+++ +
Sbjct: 7 PTAPELPERLPAEEKH-------LLSSLAAADTLARVLRPCYGPQGRQKLLVTAKGDTVL 59
Query: 278 TNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSV 457
T AA ILR L+++HPAA+++ A+ Q ++ GDG FV++ R GL
Sbjct: 60 TGHAAAILRALQLEHPAARLLREAAQGQAEQSGDGAAFVVLLAQALLAQAERLLRAGLPR 119
Query: 458 SEVIEGYEIACRKAHEILPDLVCCSAKNLRD-VDEVSSLLHTSVMSKQYGNEAFLAKLIA 634
+++ E Y + +LP L + L D V + S+++T + + LA L+A
Sbjct: 120 AQLREAYAAVAAETLALLPSLAVRALGPLEDPVWALRSVMNTHALWR----TDHLAGLVA 175
Query: 635 QACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYS 811
+AC + G F + + VC + + + G VT V A++A+ +
Sbjct: 176 RACWATRELDGGFRPERVGVCALPGARQEDSCLLPGLALPGKPCGQVTMVLSGARVALLA 235
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
C F T + + ++L+ F KG E+L+E V +A ANVVV G + + L
Sbjct: 236 CDFGPARPLAPATARLSSPDDLIRFRKGSESLIEKQVAQLA-AAANVVVVSGDIDEKTLT 294
Query: 992 YANKYHIMFGEAELQMGSQKTM 1057
+A+KY +M +Q+ S++ M
Sbjct: 295 HADKYGLMV----IQVASRREM 312
>ref|XP_002687026.1| PREDICTED: T-complex protein 1-like [Bos taurus].
Length = 534
Score = 118 bits (295), Expect = 1e-26
Identities = 88/322 (27%), Positives = 149/322 (46%), Gaps = 2/322 (0%)
Frame = +2
Query: 98 PKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFV 277
P AP + L KH + ++ A LA+ R YGP G K+++ +
Sbjct: 7 PTAPELPERLPAEEKH-------LLSSLAAADTLARVLRPCYGPQGRQKLLVTAKGDTVL 59
Query: 278 TNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSV 457
T AA ILR L+++HPAA+++ A+ Q ++ GDG FV++ R GL
Sbjct: 60 TGHAAAILRALQLEHPAARLLREAAQGQAEQSGDGAAFVVLLAQALLAQAERLLRAGLPR 119
Query: 458 SEVIEGYEIACRKAHEILPDLVCCSAKNLRD-VDEVSSLLHTSVMSKQYGNEAFLAKLIA 634
+++ E Y + +LP L + L D V + S+++T + + LA L+A
Sbjct: 120 AQLREAYAAVAAETLALLPSLAVRALGPLEDPVWALRSVMNTHALWR----TDHLAGLVA 175
Query: 635 QACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYS 811
+AC + G F + + VC + + + G VT V A++A+ +
Sbjct: 176 RACWATRELDGGFRPERVGVCALPGARQEDSCLLPGLALPGKPCGQVTMVLSGARVALLA 235
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
C F T + + ++L+ F KG E+L+E V +A ANVVV G + + L
Sbjct: 236 CDFRPARPLAPATARLSSPDDLIRFRKGSESLIEKQVAQLA-AAANVVVVSGDIDEKTLT 294
Query: 992 YANKYHIMFGEAELQMGSQKTM 1057
+A+KY +M +Q+ S++ M
Sbjct: 295 HADKYGLMV----IQVASRREM 312
>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
Length = 556
Score = 109 bits (273), Expect = 4e-24
Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI----FPDSGHFNVDNIRVC 697
L D + + TS+ SK G N F A L+ A ++I + V++I V
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 106 bits (265), Expect = 3e-23
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 4/281 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
++++ + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
E+ K E+ E ++ I +TGAN+ + D A H
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANH 312
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 106 bits (265), Expect = 3e-23
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 4/281 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
++++ + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
E+ K E+ E ++ I +TGAN+ + D A H
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANH 312
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 106 bits (265), Expect = 3e-23
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 4/281 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
++++ + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
E+ K E+ E ++ I +TGAN+ + D A H
Sbjct: 272 EDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANH 312
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 106 bits (264), Expect = 4e-23
Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 11/293 (3%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 38 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 97
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 98 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 155
Query: 530 SAKNLRDVDEVSSLLHTSVMSK---QYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
+ L D + + + TS+ SK QY + L+ + A + + + +VD +I++
Sbjct: 156 RPEELSDRETLLNSAATSLNSKVVSQY--SSLLSPMSVDAVMKVIDPATATSVDLRDIKI 213
Query: 695 CKIXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K +V +K +T V+ AKI + T+ +++
Sbjct: 214 VKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYV 273
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVV-----VTGGKVADMALHYANKYHIM 1015
++ + E + VK I TG NV+ + ++D+ALH+ NK IM
Sbjct: 274 QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 326
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,200,479
Number of extensions: 961882
Number of successful extensions: 3049
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3038
Number of HSP's successfully gapped: 18
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012799
(1062 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358947.1| PREDICTED: t-complex protein 1 subunit theta... 552 e-161
Alignment gi|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta... 545 e-159
Alignment gi|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta... 513 e-149
Alignment gi|XP_003358950.1| PREDICTED: t-complex protein 1 subunit theta... 400 e-115
Alignment gi|XP_003360114.1| PREDICTED: putative T-complex protein 1 subu... 112 3e-25
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 108 7e-24
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 106 2e-23
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 97 2e-20
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 96 3e-20
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 92 5e-19
>ref|XP_003358947.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 1 [Sus
scrofa].
Length = 548
Score = 552 bits (1423), Expect(2) = e-161
Identities = 284/311 (91%), Positives = 285/311 (91%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA
Sbjct: 121 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEA VKAIADTGANVVVTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADM 300
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 301 ALHYANKYNIM 311
Score = 34.7 bits (78), Expect(2) = e-161
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 312 LVRLNSKWDLRRLCK 326
>ref|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 2 [Sus
scrofa].
Length = 557
Score = 545 bits (1403), Expect(2) = e-159
Identities = 284/320 (88%), Positives = 285/320 (89%), Gaps = 9/320 (2%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAK---------HFSGLEEAVYRNIQACKELAQTTRTAYGPNG 235
MALHVPKAPGFAQMLKEGAK HFSGLEEAVYRNIQACKELAQTTRTAYGPNG
Sbjct: 1 MALHVPKAPGFAQMLKEGAKVRKGGRGSEHFSGLEEAVYRNIQACKELAQTTRTAYGPNG 60
Query: 236 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXX 415
MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF
Sbjct: 61 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGAL 120
Query: 416 XXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK 595
RIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK
Sbjct: 121 LELAEELLRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK 180
Query: 596 QYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDV 775
QYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDV
Sbjct: 181 QYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDV 240
Query: 776 TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVV 955
TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEA VKAIADTGANVV
Sbjct: 241 TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAQVKAIADTGANVV 300
Query: 956 VTGGKVADMALHYANKYHIM 1015
VTGGKVADMALHYANKY+IM
Sbjct: 301 VTGGKVADMALHYANKYNIM 320
Score = 34.7 bits (78), Expect(2) = e-159
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 321 LVRLNSKWDLRRLCK 335
>ref|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 3 [Sus
scrofa].
Length = 529
Score = 513 bits (1320), Expect(2) = e-149
Identities = 264/291 (90%), Positives = 265/291 (91%)
Frame = +2
Query: 143 HFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQH 322
HFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQH
Sbjct: 2 HFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQH 61
Query: 323 PAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAH 502
PAAKMIVMASHMQEQEVGDGTNFVLVF RIGLSVSEVIEGYEIACRKAH
Sbjct: 62 PAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAH 121
Query: 503 EILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD 682
EILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD
Sbjct: 122 EILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD 181
Query: 683 NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIK 862
NIRVCKI MVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIK
Sbjct: 182 NIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIK 241
Query: 863 TAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHYANKYHIM 1015
TAEELMNFSKGEENLMEA VKAIADTGANVVVTGGKVADMALHYANKY+IM
Sbjct: 242 TAEELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIM 292
Score = 34.7 bits (78), Expect(2) = e-149
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 293 LVRLNSKWDLRRLCK 307
>ref|XP_003358950.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 4 [Sus
scrofa].
Length = 475
Score = 400 bits (1027), Expect(2) = e-115
Identities = 207/234 (88%), Positives = 208/234 (88%)
Frame = +2
Query: 314 VQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACR 493
VQHPAAKMIVMASHMQEQEVGDGTNFVLVF RIGLSVSEVIEGYEIACR
Sbjct: 5 VQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACR 64
Query: 494 KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHF 673
KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHF
Sbjct: 65 KAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHF 124
Query: 674 NVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTV 853
NVDNIRVCKI MVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTV
Sbjct: 125 NVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTV 184
Query: 854 LIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHYANKYHIM 1015
LIKTAEELMNFSKGEENLMEA VKAIADTGANVVVTGGKVADMALHYANKY+IM
Sbjct: 185 LIKTAEELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIM 238
Score = 34.7 bits (78), Expect(2) = e-115
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 239 LVRLNSKWDLRRLCK 253
>ref|XP_003360114.1| PREDICTED: putative T-complex protein 1 subunit theta-like 2-like
[Sus scrofa].
Length = 810
Score = 112 bits (281), Expect = 3e-25
Identities = 82/326 (25%), Positives = 146/326 (44%), Gaps = 1/326 (0%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
M P AP + L + E+ + ++ A + LA R YGP G+ K+++
Sbjct: 265 MGSRAPPAPQLPERLGTQVE-----EKHLLSSLAAAQALATVLRPCYGPQGLQKLLVTAK 319
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
+ T A ILR L+++HPAA+++ A+ Q ++ GDG FV++ R
Sbjct: 320 GETVFTGYATAILRALQLEHPAARLLREAAQGQAEQSGDGVAFVVLLAQALLAQAEDLLR 379
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
GL +++ E Y A + +LP L + ++L +++ LH+ + + L
Sbjct: 380 AGLPRAQLREAYAAAAAETLALLPSL---AIRSLGPLEDPFWALHSVMTTHTLAQGDRLT 436
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKI 799
K++A AC + G F + + VC + + + G VT V + A++
Sbjct: 437 KMVAHACSATRELDGAFRPERVGVCALPGARLEDSCLLPGLALPGKPCGQVTMVQRGARV 496
Query: 800 AVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVAD 979
A+ +C F T L+ + +L KG E L+E V +A NVVV G + +
Sbjct: 497 ALLACAFGPARPIAPATALLSSPADLTELPKGSERLIEKQVGQLAAASINVVVVWGDIDE 556
Query: 980 MALHYANKYHIMFGEAELQMGSQKTM 1057
L A++ +M +Q+ S++ M
Sbjct: 557 ETLTQADQLGLMV----IQVQSRREM 578
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 108 bits (269), Expect = 7e-24
Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A ++I + D + V++I +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 106 bits (265), Expect = 2e-23
Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 11/293 (3%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSK---QYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
L D D + + TS+ SK QY + L+ + A + + + +VD +I++
Sbjct: 153 RPVELSDRDTLLNSATTSLNSKVVSQY--SSLLSPMSVNAVMKVIDPATATSVDLRDIKI 210
Query: 695 CKIXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K +V +K +T V+ AKI + T+ +++
Sbjct: 211 VKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYV 270
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVV-----VTGGKVADMALHYANKYHIM 1015
++ + E + VK I TG NV+ + ++D+ALH+ NK IM
Sbjct: 271 QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 97.1 bits (240), Expect = 2e-20
Identities = 79/301 (26%), Positives = 132/301 (43%), Gaps = 10/301 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K D E LL T++ SK + AF AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKK--EDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKE-----TEGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E + IA+ +
Sbjct: 185 ML---DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ ++ I +GA VV++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQ 301
Query: 992 Y 994
Y
Sbjct: 302 Y 302
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus
scrofa].
Length = 487
Score = 96.3 bits (238), Expect = 3e-20
Identities = 79/276 (28%), Positives = 128/276 (46%), Gaps = 4/276 (1%)
Frame = +2
Query: 176 NIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASH 355
+I A K +A T +T+ GPNG++KM+++ + VTND ATIL ++V H AK++V S
Sbjct: 2 HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSK 61
Query: 356 MQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSA 535
Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 62 SQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXXTTLGS 121
Query: 536 KNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV-CKIX 706
K V + H +A++ A +++ D +VD I+V K+
Sbjct: 122 K-------VVNSCHRQ-----------MAEIAVNAVLTV-ADMQRRDVDFELIKVEGKVG 162
Query: 707 XXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMN 883
+V K + + V+DAKIA+ +CPF+ +TK + + + E+
Sbjct: 163 GRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKA 222
Query: 884 FSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
K E+ E ++ I +TGAN+ + D A H
Sbjct: 223 LQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANH 258
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
Length = 545
Score = 92.0 bits (227), Expect = 5e-19
Identities = 81/308 (26%), Positives = 137/308 (44%), Gaps = 11/308 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSI--F 655
A L + N RD+ + +++++S+ +K + LA IA V F
Sbjct: 128 KALDDMISTLKKISTPVDTNNRDM--MLNIINSSITTKVISRWSSLACNIALDAVKTVQF 185
Query: 656 PDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDAKIAVY 808
++G +D RV KI ++ K DVT +K+ +I +
Sbjct: 186 EENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNPRIVLL 241
Query: 809 SCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMAL 988
+ E++ + I E+ + EE ++ + I +VV+T ++D+A
Sbjct: 242 DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 301
Query: 989 HYANKYHI 1012
HY + +I
Sbjct: 302 HYLMRANI 309
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,518,788
Number of extensions: 612736
Number of successful extensions: 1965
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1956
Number of HSP's successfully gapped: 19
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012799
(1062 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus]. 528 e-153
Alignment gi|NP_941023.1| chaperonin containing TCP1, subunit 8 (theta)-l... 111 8e-25
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 107 2e-23
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 105 5e-23
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 105 6e-23
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 99 4e-21
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 92 7e-19
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 92 7e-19
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 67 2e-11
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 67 2e-11
>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
Length = 548
Score = 528 bits (1360), Expect(2) = e-153
Identities = 270/311 (86%), Positives = 280/311 (90%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLK+GAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVIN L
Sbjct: 1 MALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVI GYEIAC+KAHEILP+LVCCSAKNLRDVDEVSSLL TS+MSKQYG+E FLA
Sbjct: 121 IGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSETFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSG+FNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGNFNVDNIRVCKILGSGIYSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM+A VKAIA TGANV+VTGGKVAD+
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADI 300
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 301 ALHYANKYNIM 311
Score = 34.7 bits (78), Expect(2) = e-153
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 312 LVRLNSKWDLRRLCK 326
>ref|NP_941023.1| chaperonin containing TCP1, subunit 8 (theta)-like 1 [Mus musculus].
Length = 562
Score = 111 bits (278), Expect = 8e-25
Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 1/289 (0%)
Frame = +2
Query: 167 VYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVM 346
+ R A + LA R+ YGP G K ++ + T AA IL+ L+++HPAA+ +
Sbjct: 42 ILRATAAAQTLASIIRSCYGPFGRQKFLVTAKGETVCTGHAAAILKALDLEHPAAQFVQE 101
Query: 347 ASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVC 526
+ Q + GDGT FV++ GL+ +++ E + A + LP L
Sbjct: 102 LAQTQVENAGDGTVFVVLLTEALLEQAHYLLWAGLTPTQLREAFATATAEVLTALPSL-- 159
Query: 527 CSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVCKIX 706
+ ++L +++ S L++ + + N +L KL+AQAC +G F ++I VC +
Sbjct: 160 -AIRSLGPLEDPSWALYSVISTHTLSNSDYLTKLVAQACWVSREPNGSFKPESIVVCVLQ 218
Query: 707 XXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYSCPFDGMITETKGTVLIKTAEELMN 883
+ + G T V DA++A+++CPF T T + EEL+
Sbjct: 219 GGKLTDSRIFPGVAIAGKLCGQKTEVLGDARVALFNCPFGPTNPFTLATPRLSNPEELLR 278
Query: 884 FSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHYANKYHIMFGEAE 1030
F K E +E + +A NV V G+V + ++ AN IM +A+
Sbjct: 279 FRKQTEQ-VEKEIAQLAIMDINVAVVLGEVNEKSVDQANYCGIMVIQAK 326
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 107 bits (266), Expect = 2e-23
Identities = 73/281 (25%), Positives = 140/281 (49%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A ++++GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIIN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPDS---GHFNVDNIRVC 697
L D + + TS+ SK G N + A ++ A +++ + D+ + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKY 299
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 105 bits (263), Expect = 5e-23
Identities = 85/285 (29%), Positives = 139/285 (48%), Gaps = 8/285 (2%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T RT+ GPNG++KM+++ + +TND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A + L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHT--SVMSKQYGNEAF--LAKLIAQACVSIFPDSGHFNVD-- 682
S K L D++ L+ T + + + N +A++ A +++ D +VD
Sbjct: 152 ---SDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTV-ADMERRDVDFE 207
Query: 683 NIRV-CKIXXXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVL 856
I+V K+ +V K + + V DAKIA+ +CPF+ +TK +
Sbjct: 208 LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLD 267
Query: 857 IKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
+ + E+ K E+ E +K I +TGAN+ + D A H
Sbjct: 268 VMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANH 312
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 105 bits (262), Expect = 6e-23
Identities = 81/293 (27%), Positives = 138/293 (47%), Gaps = 11/293 (3%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSK---QYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
L D + + + TS+ SK QY + L+ + A + + + +VD +I++
Sbjct: 153 RPVQLSDRETLLNSATTSLNSKVVSQY--SSLLSPMSVNAVMKVIDPATATSVDLRDIKI 210
Query: 695 CKIXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K +V +K +T V+ AKI + T+ +++
Sbjct: 211 VKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYA 270
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVV-----VTGGKVADMALHYANKYHIM 1015
++ + E + VK I TG NV+ + ++D+ALH+ NK IM
Sbjct: 271 QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 99.4 bits (246), Expect = 4e-21
Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 10/301 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K +D E +L T++ SK + F AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKK--QDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVM 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKE-----TEGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E K+ KIA+ +
Sbjct: 185 ML---DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ ++ I +GA V+++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQ 301
Query: 992 Y 994
Y
Sbjct: 302 Y 302
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 92.0 bits (227), Expect = 7e-19
Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 16/313 (5%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127
Query: 482 IACRKAHEILPDLVCCSAKNLRDVD-----EVSSLLHTSVMSKQYGNEAFLAKLIAQACV 646
+A L D++ K VD + S++++S+ +K + LA IA V
Sbjct: 128 MA-------LDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 647 SI--FPDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDA 793
F ++G +D RV KI ++ K DVT +K+
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNP 236
Query: 794 KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKV 973
+I + + E++ + I E+ + EE + + I +VV+T +
Sbjct: 237 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGI 296
Query: 974 ADMALHYANKYHI 1012
+D+A HY + ++
Sbjct: 297 SDLAQHYLMRANV 309
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 92.0 bits (227), Expect = 7e-19
Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 16/313 (5%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR 127
Query: 482 IACRKAHEILPDLVCCSAKNLRDVD-----EVSSLLHTSVMSKQYGNEAFLAKLIAQACV 646
+A L D++ K VD + S++++S+ +K + LA IA V
Sbjct: 128 MA-------LDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180
Query: 647 SI--FPDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDA 793
F ++G +D RV KI ++ K DVT +K+
Sbjct: 181 KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNP 236
Query: 794 KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKV 973
+I + + E++ + I E+ + EE + + I +VV+T +
Sbjct: 237 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGI 296
Query: 974 ADMALHYANKYHI 1012
+D+A HY + ++
Sbjct: 297 SDLAQHYLMRANV 309
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 67.4 bits (163), Expect = 2e-11
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 6/260 (2%)
Frame = +2
Query: 197 LAQTTRTAYGPNGMNKMVINHLEK--LFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 370
+ ++ GP GM+K++++ L VTND ATIL+ + V +PAAK++V S +Q+ E
Sbjct: 35 IGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 94
Query: 371 VGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHE-ILPDLVCCSAKNLR 547
VGDGT V V + +I G+ A + A E +L V + R
Sbjct: 95 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREALLSSAVDHGSDEAR 154
Query: 548 DVDEVSSLLHTSVMSKQY-GNEAFLAKLIAQACVSIFPDSGHFNVDNIRVC-KIXXXXXX 721
++ ++ T++ SK ++ KL +A + + G N++ I V K+
Sbjct: 155 FWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEAIHVIKKLGGSLAD 211
Query: 722 XXXXXXXMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKTAEELMNFSKGE 898
++ KK +++AKI + + D + G+ V + + ++ E
Sbjct: 212 SYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAE 271
Query: 899 ENLMEAPVKAIADTGANVVV 958
+ M+ V+ I G N +
Sbjct: 272 KEKMKEKVERILKHGINCFI 291
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 67.4 bits (163), Expect = 2e-11
Identities = 61/274 (22%), Positives = 109/274 (39%), Gaps = 3/274 (1%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
+ A+ NI A + L R GP G KM+++ + +T D +L E+++QHP A +
Sbjct: 17 QAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASI 76
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
I + Q+ GDGT ++ GL + EG+++A KA E+L D
Sbjct: 77 IAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVL-D 135
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRV 694
+ + R++ + + TS+ +K + A L + + + ++I ++ + +
Sbjct: 136 EIKVQKEMKREI--LLDVARTSLQTKVHAELADILTEAVVDSVLAIRRPGVPIDLFMVEI 193
Query: 695 CKIXXXXXXXXXXXXXMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
++ +V V+DA I + + TE KT
Sbjct: 194 VEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYKTV 253
Query: 869 EELMNFSKGEENLMEAPVKAIADTGANVVVTGGK 970
EE K E +E V+ I D V K
Sbjct: 254 EEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNK 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,604,380
Number of extensions: 845716
Number of successful extensions: 2539
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2529
Number of HSP's successfully gapped: 12
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012799
(1062 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens]. 544 e-158
Alignment gi|NP_055221.1| putative T-complex protein 1 subunit theta-like... 120 2e-27
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 109 5e-24
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 107 2e-23
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 105 5e-23
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 99 7e-21
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 96 6e-20
Alignment gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H... 70 3e-12
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 69 6e-12
Alignment gi|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Hom... 69 6e-12
>ref|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens].
Length = 548
Score = 544 bits (1401), Expect(2) = e-158
Identities = 278/311 (89%), Positives = 283/311 (90%)
Frame = +2
Query: 83 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 262
MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL
Sbjct: 1 MALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHL 60
Query: 263 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXR 442
EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVF R
Sbjct: 61 EKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLR 120
Query: 443 IGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLA 622
IGLSVSEVIEGYEIACRKAHEILP+LVCCSAKNLRD+DEVSSLL TS+MSKQYGNE FLA
Sbjct: 121 IGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQYGNEVFLA 180
Query: 623 KLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTSVKDAKIA 802
KLIAQACVSIFPDSGHFNVDNIRVCKI MVFKKETEGDVTSVKDAKIA
Sbjct: 181 KLIAQACVSIFPDSGHFNVDNIRVCKILGSGISSSSVLHGMVFKKETEGDVTSVKDAKIA 240
Query: 803 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADM 982
VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLM+A VKAIADTGANVVVTGGKVADM
Sbjct: 241 VYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADM 300
Query: 983 ALHYANKYHIM 1015
ALHYANKY+IM
Sbjct: 301 ALHYANKYNIM 311
Score = 34.7 bits (78), Expect(2) = e-158
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1017 LVRLNSKWDLKRLCK 1061
LVRLNSKWDL+RLCK
Sbjct: 312 LVRLNSKWDLRRLCK 326
>ref|NP_055221.1| putative T-complex protein 1 subunit theta-like 2 [Homo sapiens].
Length = 557
Score = 120 bits (302), Expect = 2e-27
Identities = 82/295 (27%), Positives = 135/295 (45%), Gaps = 1/295 (0%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
E + ++ A + LA R YGP+G K ++ + T A ILR LE++HPAA +
Sbjct: 30 EPHLLSSLAAVQTLASVIRPCYGPHGRQKFLVTMKGETVCTGCATAILRALELEHPAAWL 89
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
+ A Q + GDGT FV++ + GL ++ E Y A + LP
Sbjct: 90 LREAGQTQAENSGDGTAFVVLLTEALLEQAEQLLKAGLPRPQLREAYATATAEVLATLPS 149
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVDNIRVC 697
L + ++L +++ S LH+ + + L KL+A AC +I G F + + VC
Sbjct: 150 L---AIQSLGPLEDPSWALHSVMNTHTLSPMDHLTKLVAHACWAIKELDGSFKPERVGVC 206
Query: 698 KIXXXXXXXXXXXXXMVFKKETEGDVTSV-KDAKIAVYSCPFDGMITETKGTVLIKTAEE 874
+ + + G + +V A++A+++CPF T + + +
Sbjct: 207 ALPGGTLEDSCLLPGLAISGKLCGQMATVLSGARVALFACPFGPAHPNAPATARLSSPAD 266
Query: 875 LMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHYANKYHIMFGEAELQM 1039
L FSKG + L+E V +A G NV V G+V + L A+KY I+ +A M
Sbjct: 267 LAQFSKGSDQLLEKQVGQLAAAGINVAVVLGEVDEETLTLADKYGIVVIQARSWM 321
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 109 bits (272), Expect = 5e-24
Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 4/281 (1%)
Frame = +2
Query: 161 EAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 340
EA+ +I A K +A T RT+ GPNG++KM+++ + VTND ATIL ++V H AK++
Sbjct: 32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 91
Query: 341 VMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDL 520
V S Q+ E+GDGT V+V G+ + +GYE A R A E L +
Sbjct: 92 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKI 151
Query: 521 VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
+++D + + T++ SK + IA V D +VD I+V
Sbjct: 152 SDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKV 211
Query: 695 -CKIXXXXXXXXXXXXXMVFKKETEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
K+ +V K + + V+DAKIA+ +CPF+ +TK + + +
Sbjct: 212 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSV 271
Query: 869 EELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
E+ K E+ E ++ I +TGAN+ + D A H
Sbjct: 272 EDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANH 312
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 107 bits (267), Expect = 2e-23
Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 7/281 (2%)
Frame = +2
Query: 173 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 352
+N+ A +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++ +
Sbjct: 20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 79
Query: 353 HMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 532
+Q++EVGDGT V++ + + + VI GY +AC++A + + + +
Sbjct: 80 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVN 139
Query: 533 AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI----FPDSGHFNVDNIRVC 697
L D + + TS+ SK G N F A ++ A ++I + V+++ +
Sbjct: 140 TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNIL 198
Query: 698 KIXXXXXXXXXXXXXMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K ++G + +AKIA + V+I E
Sbjct: 199 KAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 258
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALHY 994
+L + E ++ + ++ I TGANV++T G + DM L Y
Sbjct: 259 KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKY 299
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 105 bits (263), Expect = 5e-23
Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 11/293 (3%)
Frame = +2
Query: 170 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 349
+ NI A K +A RT+ GP GM+KM+ + + +TND ATIL++++V HPAA+M+V
Sbjct: 35 FSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVEL 94
Query: 350 SHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCC 529
S Q+ E GDGT V++ + G+ + + E ++ A K EIL D+
Sbjct: 95 SKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM--S 152
Query: 530 SAKNLRDVDEVSSLLHTSVMSK---QYGNEAFLAKLIAQACVSIFPDSGHFNVD--NIRV 694
L D + + + TS+ SK QY + L+ + A + + + +VD +I++
Sbjct: 153 RPVELSDRETLLNSATTSLNSKVVSQY--SSLLSPMSVNAVMKVIDPATATSVDLRDIKI 210
Query: 695 CKIXXXXXXXXXXXXXMVF-KKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 871
K +V +K + +T V+ AKI + T+ +++
Sbjct: 211 VKKLGGTIDDCELVEGLVLTQKVSNSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYA 270
Query: 872 ELMNFSKGEENLMEAPVKAIADTGANVV-----VTGGKVADMALHYANKYHIM 1015
++ + E + VK I TG NV+ + ++D+ALH+ NK IM
Sbjct: 271 QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 99.0 bits (245), Expect = 7e-21
Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 10/301 (3%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+LKEG G+ + V NI AC+ +A+ RT GP GM+K++++ K ++ND ATIL
Sbjct: 8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATIL 66
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
+ L+V HPAAK +V + Q+ EVGDGT V + GL +I +
Sbjct: 67 KLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFR 126
Query: 482 IACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TSVMSKQYGNE-AFLAKLIAQACV 646
A + A + ++ K D E LL T++ SK + AF AK++ A +
Sbjct: 127 TATQLAVNKIKEIAVTVKK--ADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184
Query: 647 SIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKE-----TEGDVTSVKDAKIAVYS 811
+ + I + K+ + FKK E + KIA+ +
Sbjct: 185 ML---DDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLN 241
Query: 812 CPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKVADMALH 991
+ + + + T E+ E N++ ++ I +GA VV++ + D+A
Sbjct: 242 VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQ 301
Query: 992 Y 994
Y
Sbjct: 302 Y 302
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 95.9 bits (237), Expect = 6e-20
Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 16/313 (5%)
Frame = +2
Query: 122 MLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATIL 301
+L + K SG + NI A K +A RT GP M KM+++ + + +TND IL
Sbjct: 9 VLSQNTKRESG-RKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAIL 67
Query: 302 RELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYE 481
RE++VQHPAAK ++ S Q++EVGDGT V++ + + VI Y
Sbjct: 68 REIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAY- 126
Query: 482 IACRKAHEILPDLVCCSAK-----NLRDVDEVSSLLHTSVMSKQYGNEAFLAKLIAQACV 646
RKA L D++ K ++ D D + +++++S+ +K + LA IA V
Sbjct: 127 ---RKA---LDDMISTLKKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180
Query: 647 SI--FPDSGHFNVD---NIRVCKIXXXXXXXXXXXXXMVFKKETEGDVTS------VKDA 793
+ F ++G +D RV KI ++ K DVT +K+
Sbjct: 181 KMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNP 236
Query: 794 KIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVKAIADTGANVVVTGGKV 973
+I + + E++ + I E+ + EE ++ + I +VV+T +
Sbjct: 237 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI 296
Query: 974 ADMALHYANKYHI 1012
+D+A HY + +I
Sbjct: 297 SDLAQHYLMRANI 309
>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
Length = 499
Score = 70.1 bits (170), Expect = 3e-12
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Frame = +2
Query: 236 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFXXXX 415
M+K++++ K ++ND ATIL+ L+V HPAAK +V + Q+ EVGDGT V +
Sbjct: 1 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60
Query: 416 XXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSAKNLRDVDEVSSLLH----TS 583
GL +I + A + A + ++ K D E LL T+
Sbjct: 61 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKK--ADKVEQRKLLEKCAMTA 118
Query: 584 VMSKQYGNE-AFLAKLIAQACVSIFPDSGHFNVDNIRVCKIXXXXXXXXXXXXXMVFKKE 760
+ SK + AF AK++ A + + + I + K+ + FKK
Sbjct: 119 LSSKLISQQKAFFAKMVVDAVMML---DDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKT 175
Query: 761 -----TEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMEAPVK 925
E + KIA+ + + + + + T E+ E N++ ++
Sbjct: 176 FSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLE 235
Query: 926 AIADTGANVVVTGGKVADMALHY 994
I +GA VV++ + D+A Y
Sbjct: 236 KIHHSGAKVVLSKLPIGDVATQY 258
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 69.3 bits (168), Expect = 6e-12
Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 3/268 (1%)
Frame = +2
Query: 176 NIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASH 355
NI A + L RT GP G KM+++ + +T D +L E+++QHP A +I +
Sbjct: 23 NICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVAT 82
Query: 356 MQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPDLVCCSA 535
Q+ GDGT ++ GL + EG+E A KA E+L ++
Sbjct: 83 AQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKE 142
Query: 536 KNLRDVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRVCKIXXX 712
+ + +V+ TS+ +K + A L +++ + +++ ++ + + ++
Sbjct: 143 MKRKILLDVA---RTSLQTKVHAELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHK 199
Query: 713 XXXXXXXXXXMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNF 886
+V V+DA I + + + TE KTAEE
Sbjct: 200 LGTDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKL 259
Query: 887 SKGEENLMEAPVKAIADTGANVVVTGGK 970
K E +E V+ I D V K
Sbjct: 260 VKAERKFIEDRVQKIIDLKDKVCAQSNK 287
>ref|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Homo sapiens].
Length = 531
Score = 69.3 bits (168), Expect = 6e-12
Identities = 60/263 (22%), Positives = 105/263 (39%), Gaps = 3/263 (1%)
Frame = +2
Query: 158 EEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKM 337
+ A+ NI A + L RT GP G KM+++ + +T D +L E+++QHP A +
Sbjct: 17 QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASL 76
Query: 338 IVMASHMQEQEVGDGTNFVLVFXXXXXXXXXXXXRIGLSVSEVIEGYEIACRKAHEILPD 517
I + Q+ GDGT ++ GL + EG+E A KA + L +
Sbjct: 77 IAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEE 136
Query: 518 LVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEA-FLAKLIAQACVSIFPDSGHFNVDNIRV 694
+ D + + + TS+ +K + A L + + + ++I ++ I +
Sbjct: 137 V---KVSREMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMIEI 193
Query: 695 CKIXXXXXXXXXXXXXMVFKKETEGD--VTSVKDAKIAVYSCPFDGMITETKGTVLIKTA 868
++ +V V+DA I + + TE K+A
Sbjct: 194 MEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSA 253
Query: 869 EELMNFSKGEENLMEAPVKAIAD 937
EE K E +E VK I +
Sbjct: 254 EEREKLVKAERKFIEDRVKKIIE 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,244,786
Number of extensions: 986756
Number of successful extensions: 3064
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3051
Number of HSP's successfully gapped: 15
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012799
(1062 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 359 2e-96
>Sscrofa_Chr13
|| Length = 218635234
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 464 gtcatagaaggttatgaaatagcctgcagaaaagcccatgagattcttcctgacttggtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202719139 gtcatagaaggttatgaaatagcctgcagaaaagcccatgagattcttcctgacttggtg 202719080
Query: 524 tgttgttctgcaaaaaatctccgggatgttgatgaagtgtcatctctacttcatacctca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202719079 tgttgttctgcaaaaaatctccgggatgttgatgaagtgtcatctctacttcatacctca 202719020
Query: 584 gtaatgagtaagcagtatggcaatgaagcgtttctggccaagctcattgctcaggcatgt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202719019 gtaatgagtaagcagtatggcaatgaagcgtttctggccaagctcattgctcaggcatgt 202718960
Query: 644 g 644
|
Sbjct: 202718959 g 202718959
Score = 331 bits (167), Expect = 5e-88
Identities = 173/175 (98%)
Strand = Plus / Minus
Query: 843 agggaacagtactgataaagactgctgaagaattgatgaactttagtaagggagaagaaa 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202716688 agggaacagtactgataaagactgctgaagaattgatgaactttagtaagggagaagaaa 202716629
Query: 903 atctcatggaggcgccagtcaaagctattgctgatactggtgcaaatgttgtagtaacag 962
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202716628 atctcatggaggcgcaagtcaaagctattgctgatactggtgcaaatgttgtagtaacag 202716569
Query: 963 gaggcaaagtggcggacatggctcttcattatgcaaacaaataccatatcatgtt 1017
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 202716568 gaggcaaagtggcggacatggctcttcattatgcaaacaaatacaatatcatgtt 202716514
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 314 gtacagcatcctgctgcaaaaatgattgtaatggcctctcacatgcaggagcaggaggtt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202720405 gtacagcatcctgctgcaaaaatgattgtaatggcctctcacatgcaggagcaggaggtt 202720346
Query: 374 ggagatggcacaaattttgttctggtttttgctggagctcttctggaattagctgaagag 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202720345 ggagatggcacaaattttgttctggtttttgctggagctcttctggaattagctgaagag 202720286
Query: 434 cttctgagaattggcctgtcagtttcagaagt 465
||||||||||||||||||||||||||||||||
Sbjct: 202720285 cttctgagaattggcctgtcagtttcagaagt 202720254
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 1 cgttcccaggaggctgtgcgcgcccctcacttcctccgggatcttctgagcgggcgcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202726004 cgttcccaggaggctgtgcgcgcccctcacttcctccgggatcttctgagcgggcgcgtg 202725945
Query: 61 aatagctacctgccgtctggccatggcgcttcacgtccccaaggctccgggctttgccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202725944 aatagctacctgccgtctggccatggcgcttcacgtccccaaggctccgggctttgccca 202725885
Query: 121 gatgctcaaagaaggagcgaag 142
||||||||||||||||||||||
Sbjct: 202725884 gatgctcaaagaaggagcgaag 202725863
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 706 gggctctggtgtccattcttcttcagtattgcatggcatggtttttaagaaggaaaccga 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202717913 gggctctggtgtccattcttcttcagtattgcatggcatggtttttaagaaggaaaccga 202717854
Query: 766 aggtgatgtaacatctgtcaaagatgcaaaaatagcagtgtactcttgtccttttgatgg 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202717853 aggtgatgtaacatctgtcaaagatgcaaaaatagcagtgtactcttgtccttttgatgg 202717794
Query: 826 catgataacagaaacaaagg 845
||||||||||||||||||||
Sbjct: 202717793 catgataacagaaacaaagg 202717774
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 141 agcatttttcaggtttagaagaggctgtctacaggaacatacaggcttgcaaggagcttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202723382 agcatttttcaggtttagaagaggctgtctacaggaacatacaggcttgcaaggagcttg 202723323
Query: 201 cccaaacgactcgtacagcatatggaccaaatgg 234
||||||||||||||||||||||||||||||||||
Sbjct: 202723322 cccaaacgactcgtacagcatatggaccaaatgg 202723289
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 233 ggaatgaacaaaatggtcatcaaccacctggagaagttgtttgtgacaaatgatgcagca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202722004 ggaatgaacaaaatggtcatcaaccacctggagaagttgtttgtgacaaatgatgcagca 202721945
Query: 293 actattttaagagagctggaagta 316
||||||||||||||||||||||||
Sbjct: 202721944 actattttaagagagctggaagta 202721921
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 644 gtatctatctttcctgactctggccatttcaatgttgataacatcagagtttgtaagatt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202718848 gtatctatctttcctgactctggccatttcaatgttgataacatcagagtttgtaagatt 202718789
Query: 704 ctgg 707
||||
Sbjct: 202718788 ctgg 202718785
Score = 63.9 bits (32), Expect = 2e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1023 aggctgaactccaaatgggatctcaaaagactatgtaaaa 1062
||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 202715877 aggctgaactcaaaatgggatctcagaagactatgtaaaa 202715838
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,914,366
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 9
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)