Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012800
(1962 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specif... 1115 0.0
Alignment gi|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mit... 702 0.0
Alignment gi|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 225 1e-58
Alignment gi|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long... 169 6e-42
Alignment gi|XP_602826.3| PREDICTED: serine palmitoyltransferase, long ch... 156 5e-38
Alignment gi|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus]. 149 9e-36
Alignment gi|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus]. 124 4e-28
>ref|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial
precursor [Bos taurus].
Length = 587
Score = 1115 bits (2883), Expect = 0.0
Identities = 547/580 (94%), Positives = 559/580 (96%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MV AAMLLQRCPVLIR PTGLLGKMIKTHQFLFGIGRCPILATQGP+ SQIHLKATKAGG
Sbjct: 1 MVTAAMLLQRCPVLIRSPTGLLGKMIKTHQFLFGIGRCPILATQGPSFSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAKSHCPFML ELQDGKSKIVQKAAPEVQEDVKTFKTDLP SLAS SLKK FSS Q
Sbjct: 61 DSPSWAKSHCPFMLLELQDGKSKIVQKAAPEVQEDVKTFKTDLPTSLASTSLKKTFSSPQ 120
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
+PEKNS+K THLIQNNM G+H FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH
Sbjct: 121 EPEKNSEKVTHLIQNNMAGDHVFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 180
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
FFEASV SKDVSVWCSNDYLGMSRHPRVLQATQE LQRHGAGAGGTRNISGTSKFHVE+E
Sbjct: 181 FFEASVASKDVSVWCSNDYLGMSRHPRVLQATQEILQRHGAGAGGTRNISGTSKFHVELE 240
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGA KF
Sbjct: 241 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKF 300
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDP+HLKKLL+KSNP TPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 301 VFRHNDPDHLKKLLKKSNPETPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 360
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 361 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 420
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 421 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 480
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
G+A LN+RICDLLLSK+GIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLL AW
Sbjct: 481 GDAMLNTRICDLLLSKYGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLEAW 540
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
EVGLPLQD+S+ ACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 541 TEVGLPLQDISIAACNFCRRPVHFELMSEWERSYFGNMGP 580
>ref|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Bos
taurus].
Length = 647
Score = 702 bits (1812), Expect = 0.0
Identities = 349/570 (61%), Positives = 430/570 (75%), Gaps = 21/570 (3%)
Frame = +2
Query: 155 IGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSH-----CPFMLSELQDGKSKIVQKAA 319
+ + P + Q P SQ T+ PS A S CPF+ +E+ G S + +KA+
Sbjct: 75 VQQAPDGSQQAPDGSQQTADGTQLPSGHPSLASSQGTGSKCPFLAAEMSQGGSSVFRKAS 134
Query: 320 PEVQEDVKTFK-------------TDLPISLASASLKKPFSSAQD--PEKNSKKFTHLIQ 454
+QEDV+ + + + L + QD ++ ++ +HL+Q
Sbjct: 135 LALQEDVQEMHAVREEVAQTSVNPSVINVKTEGGELNGLLKNFQDIMRKQRPERVSHLLQ 194
Query: 455 NNMPGNHF-FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSV 631
+N+P + F YD+FF KI EKK DH+YRVFKTVNR A +P A+ + ++ + K VSV
Sbjct: 195 DNLPKSVCTFQYDRFFEKKIDEKKNDHSYRVFKTVNRKAQCFPMADDYSDSLISKKQVSV 254
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
WCSNDYLGMSRHPRV A +TL++HG GAGGTRNISGTSKFHV++EQELA+LH KD+AL
Sbjct: 255 WCSNDYLGMSRHPRVCGAVIDTLKQHGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 314
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
LFSSCFVANDSTLFTLAK++PGCEIYSDAGNHASMIQGIRNSG K++FRHND HL++L
Sbjct: 315 LFSSCFVANDSTLFTLAKMMPGCEIYSDAGNHASMIQGIRNSGVPKYIFRHNDVSHLREL 374
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG +G GIG
Sbjct: 375 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGLQGGGIG 434
Query: 1172 ERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALE 1351
+RDG+M K+DIISGTLGKA GCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L+GALE
Sbjct: 435 DRDGVMPKMDIISGTLGKAIGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALE 494
Query: 1352 SVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLL 1531
SVR+L+ EG+ LRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV +AA N+ +CD L
Sbjct: 495 SVRILRSTEGRTLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVCDEL 554
Query: 1532 LSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMT 1711
+++H IYVQAINYPTVPRGEELLR+AP+PHH+PQMM FV+ LLA W VGL L+ S
Sbjct: 555 MTRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMSYFVDNLLATWKRVGLELKPHSSA 614
Query: 1712 ACNFCRRTVHFELMSEWERSYFGNWGPSMS 1801
CNFCRR +HFE+MSE E+SYF +S
Sbjct: 615 ECNFCRRPLHFEMMSEREKSYFSGMSKLVS 644
>ref|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial precursor
[Bos taurus].
Length = 419
Score = 225 bits (574), Expect = 1e-58
Identities = 133/352 (37%), Positives = 198/352 (56%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA TL+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLRTLKEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SCF AN L + + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDANTGLFEAL--LTSEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+E+C +A QYGAL FVDE HA G G+ G G
Sbjct: 188 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICRLASQYGALVFVDESHATGFLGATGRGTD 247
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP + A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGALVSLLRQRARPYLFSNSLPPAAVGCAS 307
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL E A+ ++ R + G + I P+ +G+A L I D
Sbjct: 308 KALDLLM--ESNAIVQSMAAKTLRFRSQMEAAGFTISGANHPICPVMLGDARLALNIADD 365
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+L K GI+V +YP VP+G+ +R+ S HS E+ +++ + A++EVG
Sbjct: 366 ML-KRGIFVIGFSYPVVPKGKARIRVQISAVHS----EEDIDRCVEAFVEVG 412
>ref|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long chain base subunit
2-like [Bos taurus].
Length = 549
Score = 169 bits (429), Expect = 6e-42
Identities = 127/437 (29%), Positives = 217/437 (49%), Gaps = 24/437 (5%)
Frame = +2
Query: 422 KNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYR--------VFKTVNRWADAY 577
+ K F L QN ++ F+ I + +D+ R VF + R D Y
Sbjct: 95 EEQKDFVPLYQN---------FENFYIRNIYMRIRDNWNRPICSAPGAVFDVMERVTDDY 145
Query: 578 PFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAGAGGTRNISGTSK 754
+ F + KDV S ++LG++ ++ ++ +E ++ +G G G TR GT
Sbjct: 146 NWTFRFTGRII--KDVINMGSYNFLGLAAKYDESMRTVKEVIETYGLGVGSTRQEMGTLD 203
Query: 755 FHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN 934
H E+E +A+ ++A++F F N + L + GC I SD NHAS++ G R
Sbjct: 204 KHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARL 261
Query: 935 SGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSMDGAICPLEELCD 1087
SGA +F+HN+ + L+KLL + P T + ++ E ++SM+G+I L ++
Sbjct: 262 SGATIRIFKHNNVQSLEKLLRDAVIYGQPRTRRAWRKILILVEGIYSMEGSIVHLPDIVA 321
Query: 1088 VAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKAFGCVGGYIASTR 1264
+ +Y A ++DE H++G G G G+ E G+ + ID+ GT K+FG GGYIA +
Sbjct: 322 LKKKYKAYLYMDEAHSIGSVGPTGRGVVEFFGLDPRDIDVYMGTFTKSFGAAGGYIAGRK 381
Query: 1265 DLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALRRAHQ--RNVKHMRQL 1432
DLVD +R+++ + TS+ P V + ++L+ G +G + L+R Q +N ++ RQ
Sbjct: 382 DLVDYLRTHSHSAAYGTSMSPPVAEQIIRVMKLIMGLDGTTEGLQRVQQLAKNTRYFRQR 441
Query: 1433 LMDRGLPVIPC-PSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLA 1609
L G V S ++P+ + A + LL++ I V + +P P E R
Sbjct: 442 LSKMGFIVYGNEESPVVPLLLYMPAKVAAFARHLLNRK-IGVVVVGFPATPLAEARARFC 500
Query: 1610 PSPHHSPQMMEDFVEKL 1660
S H+ +M++ +E L
Sbjct: 501 VSAAHTQEMLDTVLEAL 517
>ref|XP_602826.3| PREDICTED: serine palmitoyltransferase, long chain base subunit 2
[Bos taurus].
Length = 469
Score = 156 bits (395), Expect = 5e-38
Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 31/378 (8%)
Frame = +2
Query: 422 KNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYR--------VFKTVNRWADAY 577
+ K F L QN ++ F+ I + +D+ R VF + R D Y
Sbjct: 95 EEQKDFVPLYQN---------FENFYIRNIYMRIRDNWNRPICSAPGAVFDVMERVTDDY 145
Query: 578 PFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAGAGGTRNISGTSK 754
+ F + KDV S ++LG++ ++ ++ +E ++ +G G G TR GT
Sbjct: 146 NWTFRFTGRII--KDVINMGSYNFLGLAAKYDESMRTVKEVIETYGLGVGSTRQEMGTLD 203
Query: 755 FHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN 934
H E+E +A+ ++A++F F N + L + GC I SD NHAS++ G R
Sbjct: 204 KHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARL 261
Query: 935 SGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSMDGAICPLEELCD 1087
SGA +F+HN+ + L+KLL + P T + ++ E ++SM+G+I L ++
Sbjct: 262 SGATIRIFKHNNVQSLEKLLRDAVIYGQPRTRRAWRKILILVEGIYSMEGSIVHLPDIVA 321
Query: 1088 VAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKAFGCVGGYIASTR 1264
+ +Y A ++DE H++G G G G+ E G+ + ID+ GT K+FG GGYIA +
Sbjct: 322 LKKKYKAYLYMDEAHSIGSVGPTGRGVVEFFGLDPRDIDVYMGTFTKSFGAAGGYIAGRK 381
Query: 1265 DLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALRRAHQ--RNVKHMRQL 1432
DLVD +R+++ + TS+ P V + ++L+ G +G + L+R Q +N ++ RQ
Sbjct: 382 DLVDYLRTHSHSAAYGTSMSPPVAEQIIRVMKLIMGLDGTTEGLQRVQQLAKNTRYFRQR 441
Query: 1433 LMDRGL--------PVIP 1462
L G PV+P
Sbjct: 442 LSKMGFIVYGNEESPVVP 459
>ref|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus].
Length = 562
Score = 149 bits (376), Expect = 9e-36
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Frame = +2
Query: 617 KDVSVWCSNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELH 793
KDV S +YLG +R+ Q A + L+ +G G TR G H E+E+ +A
Sbjct: 168 KDVINMGSYNYLGFARNTGPCQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVANFL 227
Query: 794 QKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDP 973
++A+ + F N + L + GC I SD NHAS++ G R SGA VF+HN+
Sbjct: 228 GVEAAMAYGMGFATNSMNIPAL--VSKGCLILSDELNHASLVLGARLSGATIRVFKHNNM 285
Query: 974 EHLKKLLEKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDE 1126
+ L+KLL+ + P ++ E ++SM+G+I L E+ + +Y A ++DE
Sbjct: 286 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 345
Query: 1127 VHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGF 1303
H++G G G G+ + G+ +DI+ GT K+FG GGYI + L+D +R+++
Sbjct: 346 AHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKALIDYLRTHSHSA 405
Query: 1304 IFTTSLPPMVLSGALESVRLLKGEEGQALRR----AHQRNVKHMRQLLMDRGL------- 1450
++ SL P V + +++ + G++G L + NV++ R+ L G
Sbjct: 406 VYAASLSPPVAEQIITAMKCIMGQDGTTLGKECIQQLAENVRYFRRRLKSMGFIIYGNED 465
Query: 1451 -PVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHS 1627
PV+P + +P ++G + K I V + +P P E R S H+
Sbjct: 466 SPVVPLMLY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLSAAHT 517
Query: 1628 PQMMEDFVEKL 1660
+ ++ ++++
Sbjct: 518 RETLDTALKEI 528
>ref|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus].
Length = 473
Score = 124 bits (310), Expect = 4e-28
Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 11/269 (4%)
Frame = +2
Query: 608 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 787
V K+ + S ++LG+ +PR+ A +L+++G G G R GT H+++E LA+
Sbjct: 95 VNGKECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
Query: 788 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 967
+ + A+++S F S + +K G ++ D ++ +G++ S + VF HN
Sbjct: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDKAACFAIQKGLQASRSDIKVFNHN 212
Query: 968 DPEHLKKLL------EKSNP----VTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTF 1117
D + L++LL ++ NP VT + + E ++ G +CPL EL + ++Y A F
Sbjct: 213 DMDDLERLLKEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPELVKLKYKYKARIF 272
Query: 1118 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1294
++E + G+ G G G+ E GI + ID+IS + + +GG+ ++D R
Sbjct: 273 LEESLSFGVLGEHGRGVTEHFGISIDDIDLISANMENSLASIGGFCCGRSFVIDHQRLSG 332
Query: 1295 AGFIFTTSLPPMVLSGALESVRLLKGEEG 1381
G+ F+ SLPP++ + A+E++ +++ G
Sbjct: 333 QGYCFSASLPPLLAAAAIEALNIMEENPG 361
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,130,447
Number of extensions: 2666696
Number of successful extensions: 10101
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10048
Number of HSP's successfully gapped: 7
Length of query: 654
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 545
Effective length of database: 14,074,782
Effective search space: 7670756190
Effective search space used: 7670756190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012800
(1962 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthas... 1071 0.0
Alignment gi|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthas... 716 0.0
Alignment gi|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthas... 715 0.0
Alignment gi|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthas... 710 0.0
Alignment gi|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthas... 709 0.0
Alignment gi|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthas... 707 0.0
Alignment gi|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthas... 706 0.0
Alignment gi|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate co... 233 7e-61
Alignment gi|XP_542889.2| PREDICTED: similar to serine palmitoyltransfera... 167 4e-41
Alignment gi|XP_537524.2| PREDICTED: similar to serine palmitoyltransfera... 148 2e-35
>ref|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthase, erythroid-specific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-E) [Canis familiaris].
Length = 587
Score = 1071 bits (2769), Expect(2) = 0.0
Identities = 527/580 (90%), Positives = 546/580 (94%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MV AMLLQ CPVL R GLLGK+IKTHQFLFGIGRCPILATQ PT SQIHLKATKAGG
Sbjct: 1 MVVVAMLLQCCPVLARDHIGLLGKIIKTHQFLFGIGRCPILATQRPTFSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSP WAKS CPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLP S AS SL+KPFS+ Q
Sbjct: 61 DSPPWAKSPCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPRSPASTSLRKPFSNPQ 120
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
+ E S+K THL+QNNM GNH FGYDQFFR KIMEKKQDHTYRVFKTVNRWADAYPFA+H
Sbjct: 121 ELELISEKVTHLVQNNMIGNHVFGYDQFFRHKIMEKKQDHTYRVFKTVNRWADAYPFAQH 180
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
F EAS+ SKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVE+E
Sbjct: 181 FSEASMASKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVELE 240
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKD+ALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGA KF
Sbjct: 241 QELAELHQKDAALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKF 300
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDP+HLKKLL++SN TPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 301 VFRHNDPDHLKKLLKESNTRTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 360
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYG +GAGIGERDG+MHKIDI+SGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 361 AVGLYGPQGAGIGERDGVMHKIDIVSGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 420
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 421 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 480
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
G+AALNS+ICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFV+KLL AW
Sbjct: 481 GDAALNSKICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVQKLLVAW 540
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
EVGLPLQDVSM ACNFC R VHFELMSEWERSYFGN GP
Sbjct: 541 TEVGLPLQDVSMAACNFCHRPVHFELMSEWERSYFGNMGP 580
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1783 LGPQYVTTYA 1812
+GPQYVTTYA
Sbjct: 578 MGPQYVTTYA 587
>ref|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 5 [Canis familiaris].
Length = 625
Score = 716 bits (1848), Expect = 0.0
Identities = 366/621 (58%), Positives = 453/621 (72%), Gaps = 44/621 (7%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQI--- 205
+++RCP L R P L K K+ LF CP L+T C Q+
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKET 61
Query: 206 ----HLKATKAGGDSPSW---------AKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKT 346
T+A G+ PS S CPF+ +++ S + +KA+ E+QEDV+
Sbjct: 62 PPANEKAETQAEGELPSGHSSLATSQGTASKCPFLAAQMSQKGSSVFRKASLELQEDVQE 121
Query: 347 F---KTDLPISLASASLKKPFSSAQDP------------EKNSKKFTHLIQNNMPGN-HF 478
+ ++ + + S+ + DP ++ ++ +HL+Q+N+P +
Sbjct: 122 MHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRPERVSHLLQDNLPKSVST 181
Query: 479 FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGM 658
F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ + K VSVWCSNDYLGM
Sbjct: 182 FQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSNDYLGM 241
Query: 659 SRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVAN 838
SRHPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSCFVAN
Sbjct: 242 SRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVAN 301
Query: 839 DSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTP 1018
DSTLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHND HL++LL++S+P P
Sbjct: 302 DSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRSDPSVP 361
Query: 1019 KIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKI 1198
KIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG+RG GIG+RDG+M K+
Sbjct: 362 KIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGVMPKM 421
Query: 1199 DIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEE 1378
DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L+GALESVR+LK E
Sbjct: 422 DIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILKSAE 481
Query: 1379 GQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQ 1558
G+ALRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA N+ +CD L+S+H IYVQ
Sbjct: 482 GRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDELMSRHNIYVQ 541
Query: 1559 AINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRRTV 1738
AINYPTVPRGEELLR+AP+PHH+PQMM F+E LLA W VGL L+ S CNFCRR +
Sbjct: 542 AINYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPL 601
Query: 1739 HFELMSEWERSYFGNWGPSMS 1801
HFE+MSE E+SYF +S
Sbjct: 602 HFEVMSEREKSYFSGMSKLVS 622
>ref|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 6 [Canis familiaris].
Length = 623
Score = 715 bits (1845), Expect = 0.0
Identities = 366/619 (59%), Positives = 451/619 (72%), Gaps = 42/619 (6%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQIHLK 214
+++RCP L R P L K K+ LF CP L+T C Q+
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVQQT 61
Query: 215 A-----TKAGGDSPSW---------AKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF- 349
A T G PS S CPF+ +++ S + +KA+ E+QEDV+
Sbjct: 62 ADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGSSVFRKASLELQEDVQEMH 121
Query: 350 --KTDLPISLASASLKKPFSSAQDP------------EKNSKKFTHLIQNNMPGN-HFFG 484
+ ++ + + S+ + DP ++ ++ +HL+Q+N+P + F
Sbjct: 122 AVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRPERVSHLLQDNLPKSVSTFQ 181
Query: 485 YDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSR 664
YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ + K VSVWCSNDYLGMSR
Sbjct: 182 YDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSNDYLGMSR 241
Query: 665 HPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDS 844
HPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSCFVANDS
Sbjct: 242 HPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDS 301
Query: 845 TLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKI 1024
TLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHND HL++LL++S+P PKI
Sbjct: 302 TLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKI 361
Query: 1025 VAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDI 1204
VAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG+RG GIG+RDG+M K+DI
Sbjct: 362 VAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGVMPKMDI 421
Query: 1205 ISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQ 1384
ISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L+GALESVR+LK EG+
Sbjct: 422 ISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILKSAEGR 481
Query: 1385 ALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAI 1564
ALRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA N+ +CD L+S+H IYVQAI
Sbjct: 482 ALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDELMSRHNIYVQAI 541
Query: 1565 NYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRRTVHF 1744
NYPTVPRGEELLR+AP+PHH+PQMM F+E LLA W VGL L+ S CNFCRR +HF
Sbjct: 542 NYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHF 601
Query: 1745 ELMSEWERSYFGNWGPSMS 1801
E+MSE E+SYF +S
Sbjct: 602 EVMSEREKSYFSGMSKLVS 620
>ref|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 3 [Canis familiaris].
Length = 628
Score = 710 bits (1833), Expect = 0.0
Identities = 366/626 (58%), Positives = 452/626 (72%), Gaps = 49/626 (7%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQG--PTCSQIHLKATKAGGDSPS 244
+++RCP L R P L K K+ LF CP + G P + AT++ SP
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEIGAKPAPRALSTSATRSTS-SPQ 60
Query: 245 WAK-------------------------------SHCPFMLSELQDGKSKIVQKAAPEVQ 331
W++ S CPF+ +++ S + +KA+ E+Q
Sbjct: 61 WSEVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGSSVFRKASLELQ 120
Query: 332 EDVKTFK----------TDLPISLAS-----ASLKKPFSSAQDPEKNSKKFTHLIQNNMP 466
EDV+ T IS+ + + L + F ++ ++ +HL+Q+N+P
Sbjct: 121 EDVQEMHAVRKGKHMTGTPSVISVKADGGDPSGLLRNFQDIMRKQR-PERVSHLLQDNLP 179
Query: 467 GN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSN 643
+ F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ + K VSVWCSN
Sbjct: 180 KSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSN 239
Query: 644 DYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSS 823
DYLGMSRHPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSS
Sbjct: 240 DYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSS 299
Query: 824 CFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS 1003
CFVANDSTLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHND HL++LL++S
Sbjct: 300 CFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRS 359
Query: 1004 NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDG 1183
+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG+RG GIG+RDG
Sbjct: 360 DPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDG 419
Query: 1184 IMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRL 1363
+M K+DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L+GALESVR+
Sbjct: 420 VMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRI 479
Query: 1364 LKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKH 1543
LK EG+ALRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA N+ +CD L+S+H
Sbjct: 480 LKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDELMSRH 539
Query: 1544 GIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNF 1723
IYVQAINYPTVPRGEELLR+AP+PHH+PQMM F+E LLA W VGL L+ S CNF
Sbjct: 540 NIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNF 599
Query: 1724 CRRTVHFELMSEWERSYFGNWGPSMS 1801
CRR +HFE+MSE E+SYF +S
Sbjct: 600 CRRPLHFEVMSEREKSYFSGMSKLVS 625
>ref|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 2 [Canis familiaris].
Length = 629
Score = 709 bits (1831), Expect = 0.0
Identities = 364/625 (58%), Positives = 450/625 (72%), Gaps = 48/625 (7%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQIH-- 208
+++RCP L R P L K K+ LF CP L+T C Q+
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKET 61
Query: 209 -----------LKATKAGGDSPSW---------AKSHCPFMLSELQDGKSKIVQKAAPEV 328
++ + G PS S CPF+ +++ S + +KA+ E+
Sbjct: 62 PPANENFNKNSIEGSLDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGSSVFRKASLEL 121
Query: 329 QEDVKTFKTDLPISLASASLKK-PFSSAQDP------------EKNSKKFTHLIQNNMPG 469
QEDV+ + +++K + DP ++ ++ +HL+Q+N+P
Sbjct: 122 QEDVQEMHAVRKGKHMTGTIRKNEEADGGDPSGLLRNFQDIMRKQRPERVSHLLQDNLPK 181
Query: 470 N-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSND 646
+ F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ + K VSVWCSND
Sbjct: 182 SVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSND 241
Query: 647 YLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSC 826
YLGMSRHPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSC
Sbjct: 242 YLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSC 301
Query: 827 FVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSN 1006
FVANDSTLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHND HL++LL++S+
Sbjct: 302 FVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRSD 361
Query: 1007 PVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGI 1186
P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG+RG GIG+RDG+
Sbjct: 362 PSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGV 421
Query: 1187 MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLL 1366
M K+DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L+GALESVR+L
Sbjct: 422 MPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRIL 481
Query: 1367 KGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHG 1546
K EG+ALRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA N+ +CD L+S+H
Sbjct: 482 KSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDELMSRHN 541
Query: 1547 IYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFC 1726
IYVQAINYPTVPRGEELLR+AP+PHH+PQMM F+E LLA W VGL L+ S CNFC
Sbjct: 542 IYVQAINYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFC 601
Query: 1727 RRTVHFELMSEWERSYFGNWGPSMS 1801
RR +HFE+MSE E+SYF +S
Sbjct: 602 RRPLHFEVMSEREKSYFSGMSKLVS 626
>ref|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 1 [Canis familiaris].
Length = 640
Score = 707 bits (1826), Expect = 0.0
Identities = 365/638 (57%), Positives = 451/638 (70%), Gaps = 61/638 (9%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQIHLK 214
+++RCP L R P L K K+ LF CP L+T C Q+ K
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQV--K 59
Query: 215 ATKAGGDSPSWAK---------------------------------SHCPFMLSELQDGK 295
T + AK S CPF+ +++
Sbjct: 60 ETPPANEKDKTAKAEVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKG 119
Query: 296 SKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDP------------EKNS 430
S + +KA+ E+QEDV+ + ++ + + S+ + DP ++
Sbjct: 120 SSVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRP 179
Query: 431 KKFTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEAS 607
++ +HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++
Sbjct: 180 ERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSL 239
Query: 608 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 787
+ K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+
Sbjct: 240 ITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELAD 299
Query: 788 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 967
LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHN
Sbjct: 300 LHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHN 359
Query: 968 DPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
D HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLY
Sbjct: 360 DVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 419
Query: 1148 GSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPP 1327
G+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPP
Sbjct: 420 GARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPP 479
Query: 1328 MVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAAL 1507
M+L+GALESVR+LK EG+ALRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA
Sbjct: 480 MLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAK 539
Query: 1508 NSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGL 1687
N+ +CD L+S+H IYVQAINYPTVPRGEELLR+AP+PHH+PQMM F+E LLA W VGL
Sbjct: 540 NTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGL 599
Query: 1688 PLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGPSMS 1801
L+ S CNFCRR +HFE+MSE E+SYF +S
Sbjct: 600 ELKPHSSAECNFCRRPLHFEVMSEREKSYFSGMSKLVS 637
>ref|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 4 [Canis familiaris].
Length = 642
Score = 706 bits (1822), Expect = 0.0
Identities = 367/638 (57%), Positives = 449/638 (70%), Gaps = 61/638 (9%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQIH-- 208
+++RCP L R P L K K+ LF CP L+T C Q+
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKET 61
Query: 209 ----------LKATKAGGDSPSW---------AKSHCPFMLSELQDGKSKIVQKAAPEVQ 331
L G PS S CPF+ +++ S + +KA+ E+Q
Sbjct: 62 PPANESKFVILTPQVDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGSSVFRKASLELQ 121
Query: 332 EDVKTFKTDLPISLASASLKKPFSSAQ---------------DP------------EKNS 430
EDV+ + +++K AQ DP ++
Sbjct: 122 EDVQEMHAVRKGKHMTGTIRKNEEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRP 181
Query: 431 KKFTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEAS 607
++ +HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++
Sbjct: 182 ERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSL 241
Query: 608 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 787
+ K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+
Sbjct: 242 ITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELAD 301
Query: 788 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 967
LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHN
Sbjct: 302 LHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHN 361
Query: 968 DPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
D HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLY
Sbjct: 362 DVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 421
Query: 1148 GSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPP 1327
G+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPP
Sbjct: 422 GARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPP 481
Query: 1328 MVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAAL 1507
M+L+GALESVR+LK EG+ALRR HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA
Sbjct: 482 MLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAK 541
Query: 1508 NSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGL 1687
N+ +CD L+S+H IYVQAINYPTVPRGEELLR+AP+PHH+PQMM F+E LLA W VGL
Sbjct: 542 NTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGL 601
Query: 1688 PLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGPSMS 1801
L+ S CNFCRR +HFE+MSE E+SYF +S
Sbjct: 602 ELKPHSSAECNFCRRPLHFEVMSEREKSYFSGMSKLVS 639
>ref|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial precursor (AKB ligase) (Glycine
acetyltransferase) [Canis familiaris].
Length = 419
Score = 233 bits (593), Expect = 7e-61
Identities = 137/352 (38%), Positives = 206/352 (58%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA + L+ GAG TR I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSTRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDAN-AGLFE-ALLSPQDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+E+C +A +YGAL FVDE HA G G+ G G
Sbjct: 188 LQEAQNHRLRLVATDGAFSMDGDIAPLQEICHLASRYGALVFVDECHATGFLGATGRGTD 247
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL E A+ ++ K R + G V+ I P+ +G+A L S + D
Sbjct: 308 KALDLLM--ESNAIVQSMAAKTKRFRSKMEAAGFTVLGASHPICPVMLGDARLASCMADD 365
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+L K GI+V +YP VP+ + +R+ S HS E+ +++ + A++EVG
Sbjct: 366 ML-KRGIFVIGFSYPVVPKNKARIRVQISAVHS----EEDIDRCVEAFVEVG 412
>ref|XP_542889.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 552
Score = 167 bits (422), Expect = 4e-41
Identities = 118/395 (29%), Positives = 204/395 (51%), Gaps = 23/395 (5%)
Frame = +2
Query: 545 FKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSR-HPRVLQATQETLQRHGAGA 721
F + R +D Y + F + KDV S ++LG++ + ++ ++ L+ +G G
Sbjct: 138 FDVMERVSDDYNWTFRFTGRII--KDVINMGSYNFLGLAASYDESMRTVKDVLEEYGLGV 195
Query: 722 GGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAG 901
TR+ GT H E+E +A+ ++A++F F N + L + GC I SD
Sbjct: 196 ASTRHEMGTLDKHEELENLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDEL 253
Query: 902 NHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSMD 1054
NHAS++ G R SGA +F+HN+ + L+KLL + P + ++ E ++SM+
Sbjct: 254 NHASLVLGARLSGATIRIFKHNNMQSLEKLLRDAVIYGQPRVRRAWKKILILVEGIYSME 313
Query: 1055 GAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKAF 1231
G+I L ++ + +Y A ++DE H++G G G G+ E G+ + +D++ GT K+F
Sbjct: 314 GSIVHLPQIVALKKKYKAYLYIDEAHSIGSVGPTGRGVVEFFGLDPRDVDVLMGTFTKSF 373
Query: 1232 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALRRAHQ 1405
G GGYIA ++LVD +R ++ ++ TS+ P V + S++L+ G +G + L+R Q
Sbjct: 374 GAAGGYIAGRKELVDYLRVHSHSAVYATSMSPPVAEQIIRSMKLIMGLDGTTEGLQRVRQ 433
Query: 1406 --RNVKHMRQLLMDRGL--------PVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYV 1555
+N ++ RQ L + G PVIP + +P +V A + LL K G+ V
Sbjct: 434 LAKNTRYFRQRLNEMGFIIYGNEESPVIPLLLY-MPAKVAAFARH-----LLNRKIGVVV 487
Query: 1556 QAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKL 1660
+ +P P E R S H+ +M++ +E L
Sbjct: 488 --VGFPATPLAEARARFCISAAHTREMLDTVLENL 520
>ref|XP_537524.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 691
Score = 148 bits (374), Expect = 2e-35
Identities = 99/364 (27%), Positives = 181/364 (49%), Gaps = 23/364 (6%)
Frame = +2
Query: 638 SNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 814
S +YLG +R+ Q A + L+ +G G TR G H E+E+ +A ++A+
Sbjct: 304 SYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFLGVEAAMA 363
Query: 815 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 994
+ F N + L + GC I SD NHAS++ G R SGA +F+HN+ + L+KLL
Sbjct: 364 YGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 421
Query: 995 EKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
+ + P ++ E ++SM+G+I L E+ + +Y A ++DE H++G
Sbjct: 422 KDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL 481
Query: 1148 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1324
G G G+ + G+ +D++ GT K+FG GGYI ++L+D +R+++ ++ TSL
Sbjct: 482 GPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLS 541
Query: 1325 PMVLSGALESVRLLKGEEGQALRR----AHQRNVKHMRQLLMDRGL--------PVIPCP 1468
V+ + S++ + G++G L + N ++ R+ L + G PV+P
Sbjct: 542 APVVEQIVTSMKCIMGQDGTTLGKQCIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLM 601
Query: 1469 SHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDF 1648
+ +P ++G + K I V + +P P E R S H+ ++++
Sbjct: 602 LY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTA 653
Query: 1649 VEKL 1660
++++
Sbjct: 654 LKEI 657
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 89,457,227
Number of extensions: 2705481
Number of successful extensions: 10053
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10003
Number of HSP's successfully gapped: 12
Length of query: 654
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 545
Effective length of database: 15,240,880
Effective search space: 8306279600
Effective search space used: 8306279600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012800
(1962 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, eryth... 1174 0.0
Alignment gi|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, eryth... 1086 0.0
Alignment gi|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, eryth... 1086 0.0
Alignment gi|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonsp... 692 0.0
Alignment gi|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 228 1e-59
Alignment gi|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 228 1e-59
Alignment gi|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Su... 173 4e-43
Alignment gi|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, pa... 155 1e-37
>ref|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 587
Score = 1174 bits (3037), Expect = 0.0
Identities = 577/580 (99%), Positives = 577/580 (99%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG
Sbjct: 1 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ
Sbjct: 61 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 120
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
DPEKNSKK THLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH
Sbjct: 121 DPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 180
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE
Sbjct: 181 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 240
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF
Sbjct: 241 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 300
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 301 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 360
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 361 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 420
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 421 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 480
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW
Sbjct: 481 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 540
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
IEVGLPLQDVSMTACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 541 IEVGLPLQDVSMTACNFCRRPVHFELMSEWERSYFGNMGP 580
>ref|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 3 [Sus scrofa].
Length = 550
Score = 1086 bits (2808), Expect = 0.0
Identities = 541/580 (93%), Positives = 541/580 (93%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG
Sbjct: 1 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKT
Sbjct: 61 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKT------------------- 101
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
GNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH
Sbjct: 102 ------------------GNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 143
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE
Sbjct: 144 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 203
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF
Sbjct: 204 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 263
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 264 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 323
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 324 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 383
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 384 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 443
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW
Sbjct: 444 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 503
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
IEVGLPLQDVSMTACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 504 IEVGLPLQDVSMTACNFCRRPVHFELMSEWERSYFGNMGP 543
>ref|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 550
Score = 1086 bits (2808), Expect = 0.0
Identities = 541/580 (93%), Positives = 541/580 (93%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG
Sbjct: 1 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKT
Sbjct: 61 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKT------------------- 101
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
GNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH
Sbjct: 102 ------------------GNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 143
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE
Sbjct: 144 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 203
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF
Sbjct: 204 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 263
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 264 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 323
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 324 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 383
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 384 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 443
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW
Sbjct: 444 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 503
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
IEVGLPLQDVSMTACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 504 IEVGLPLQDVSMTACNFCRRPVHFELMSEWERSYFGNMGP 543
>ref|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonspecific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 526
Score = 692 bits (1786), Expect = 0.0
Identities = 342/523 (65%), Positives = 417/523 (79%), Gaps = 16/523 (3%)
Frame = +2
Query: 281 LQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDPEKNSKKF---- 439
+ G S + +KA+ E+QEDV+ + ++ + + S+ + +P K F
Sbjct: 1 MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM 60
Query: 440 --------THLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A +P A+
Sbjct: 61 RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD 120
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
+ ++ V + VSVWCSNDYLGMSRHPRV A +TL+++G GAGGTRNISGTSKFHV++E
Sbjct: 121 YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLE 180
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K+
Sbjct: 181 QELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKY 240
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
+FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVH
Sbjct: 241 IFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVH 300
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYG++G GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFT
Sbjct: 301 AVGLYGAQGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFT 360
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVL+GALESVR+LK EG+ALRR HQRNVK MRQ+LMD GLPVI CPSHIIP+RV
Sbjct: 361 TSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRV 420
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
+AA N+ ICD L+S++ IYVQAINYPTVPRGEELLR+AP+P H+PQMM +FV+ LLAAW
Sbjct: 421 SDAAKNTEICDELMSRYNIYVQAINYPTVPRGEELLRIAPTPLHTPQMMTNFVDNLLAAW 480
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGPSMS 1801
+VGL L+ S CNFCRR +HFE+MSE E+SYF +S
Sbjct: 481 KQVGLELKPHSSAECNFCRRPLHFEVMSEREKSYFSGMSKLVS 523
>ref|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 228 bits (580), Expect = 1e-59
Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 187
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 188 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 247
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + D
Sbjct: 308 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLASCMAD- 364
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+ K GI+V +YP VP+G+ +R+ S HS E+ +++ + A++EVG
Sbjct: 365 DMQKRGIFVIGFSYPVVPKGKARIRVQISAVHS----EEDIDRCVEAFVEVG 412
>ref|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 228 bits (580), Expect = 1e-59
Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 187
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 188 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 247
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + D
Sbjct: 308 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLASCMAD- 364
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+ K GI+V +YP VP+G+ +R+ S HS E+ +++ + A++EVG
Sbjct: 365 DMQKRGIFVIGFSYPVVPKGKARIRVQISAVHS----EEDIDRCVEAFVEVG 412
>ref|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Sus scrofa].
Length = 548
Score = 173 bits (438), Expect = 4e-43
Identities = 124/437 (28%), Positives = 219/437 (50%), Gaps = 24/437 (5%)
Frame = +2
Query: 422 KNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYR--------VFKTVNRWADAY 577
+ K F L QN ++ F+ + + +D+ R +F + R +D Y
Sbjct: 93 EEQKDFVPLYQN---------FENFYTRNLYMRIRDNWNRPICSNPGALFDVMERVSDDY 143
Query: 578 PFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAGAGGTRNISGTSK 754
+ F KDV S ++LG++ ++ ++ ++ L+ +G G G TR GT
Sbjct: 144 NWT--FRSTGRIIKDVINMGSYNFLGLAAKYDESMRTVKDVLETYGIGVGSTRQEMGTLD 201
Query: 755 FHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN 934
H E+E +A+ ++A++F F N + L + GC I SD NHAS++ G R
Sbjct: 202 KHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARL 259
Query: 935 SGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSMDGAICPLEELCD 1087
SGA +F+HN+ + L+KLL + P T + ++ E ++SM+G+I L ++
Sbjct: 260 SGATIRIFKHNNVQSLEKLLRDAIIYGQPRTRRAWKKILILVEGIYSMEGSIVYLPQIVA 319
Query: 1088 VAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKAFGCVGGYIASTR 1264
+ +Y A ++DE H++G G G G+ E G+ + +D+ GT K+FG GGY+A +
Sbjct: 320 LKKKYKAYLYIDEAHSIGSLGPTGRGVVEFFGMDPRDVDVCMGTFTKSFGASGGYLAGRK 379
Query: 1265 DLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALRRAHQ--RNVKHMRQL 1432
DLVD +R+++ + TS+ P V + S++L+ G +G Q L+R Q +N ++ RQ
Sbjct: 380 DLVDYLRAHSHSAAYATSMSPPVAEQIIRSMKLIMGLDGTTQGLQRVQQLAKNTRYFRQR 439
Query: 1433 LMDRGLPVIPC-PSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLA 1609
L G + S ++P+ + A + LL+++ I V + +P P E R
Sbjct: 440 LSQLGFIIYGNEASPVVPLLLYMPAKVAAFARHLLNRYKIGVVVVGFPATPLAEARARFC 499
Query: 1610 PSPHHSPQMMEDFVEKL 1660
S H+ +M++ +E L
Sbjct: 500 ISATHTREMLDKVLEAL 516
>ref|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, partial [Sus scrofa].
Length = 463
Score = 155 bits (391), Expect = 1e-37
Identities = 103/371 (27%), Positives = 185/371 (49%), Gaps = 23/371 (6%)
Frame = +2
Query: 617 KDVSVWCSNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELH 793
KDV S +YLG +R+ Q A + L+ +G G TR G H E+E+ +A
Sbjct: 69 KDVINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFL 128
Query: 794 QKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDP 973
++A+ + F N + L + GC I SD NHAS++ G R SGA +F+HN+
Sbjct: 129 GVEAAMAYGMGFATNSMNIPAL--VSKGCLILSDELNHASLVLGARLSGATIRIFKHNNM 186
Query: 974 EHLKKLLEKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDE 1126
+ L+KLL+ + P ++ E ++SM+G+I L E+ + +Y A ++DE
Sbjct: 187 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 246
Query: 1127 VHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGF 1303
H++G G G G+ + G+ +DI+ GT K+FG GGYI ++L+D +R+++
Sbjct: 247 AHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSA 306
Query: 1304 IFTTSLPPMVLSGALESVRLLKGEEGQALRR----AHQRNVKHMRQLLMDRGL------- 1450
++ TSL P V+ + S++ + G++G L + N ++ R+ L + G
Sbjct: 307 VYATSLSPPVVEQIITSMKCIMGQDGTTLGKECIQQLAENTRYFRRRLKEMGFIIYGNED 366
Query: 1451 -PVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHS 1627
PV+P + +P ++G + K + V + +P P E R S H+
Sbjct: 367 SPVVPLMLY-MPAKIGAFGRE-------MLKRNVGVVVVGFPATPIIESRARFCLSAAHT 418
Query: 1628 PQMMEDFVEKL 1660
++++ ++++
Sbjct: 419 KEILDTALKEI 429
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 55,734,383
Number of extensions: 1745586
Number of successful extensions: 6594
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6565
Number of HSP's successfully gapped: 12
Length of query: 654
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 549
Effective length of database: 8,729,747
Effective search space: 4792631103
Effective search space used: 4792631103
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012800
(1962 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific,... 1054 0.0
Alignment gi|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specif... 1010 0.0
Alignment gi|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitoch... 709 0.0
Alignment gi|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 234 1e-61
Alignment gi|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 208 1e-53
Alignment gi|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus]. 158 1e-38
Alignment gi|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus]. 154 3e-37
Alignment gi|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus]. 125 2e-28
>ref|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a [Mus musculus].
Length = 587
Score = 1054 bits (2726), Expect(2) = 0.0
Identities = 516/580 (88%), Positives = 541/580 (93%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MVAAAMLL+ CPVL +GPTGLLGK+ KT+QFLF IGRCPILATQGPTCSQIHLKATKAGG
Sbjct: 1 MVAAAMLLRSCPVLSQGPTGLLGKVAKTYQFLFSIGRCPILATQGPTCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAKSHCPFMLSELQD KSKIVQ+AAPEVQEDVKTFKTDL ++ S + F S Q
Sbjct: 61 DSPSWAKSHCPFMLSELQDRKSKIVQRAAPEVQEDVKTFKTDLLSTMDSTTRSHSFPSFQ 120
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
+PE+ HLIQNNM G+ FGYDQFFRDKIMEKKQDHTYRVFKTVNRWA+AYPFA+H
Sbjct: 121 EPEQTEGAVPHLIQNNMTGSQAFGYDQFFRDKIMEKKQDHTYRVFKTVNRWANAYPFAQH 180
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
F EAS+ SKDVSVWCSNDYLG+SRHPRVLQA +ETL+ HGAGAGGTRNISGTSKFHVE+E
Sbjct: 181 FSEASMASKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRNISGTSKFHVELE 240
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAK+LPGCEIYSDAGNHASMIQGIRNSGA KF
Sbjct: 241 QELAELHQKDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGIRNSGAAKF 300
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDP HLKKLLEKS+P TPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 301 VFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 360
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYG+RGAGIGERDGIMHK+DIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 361 AVGLYGARGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 420
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRG PVIPCPSHIIPIRV
Sbjct: 421 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRV 480
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNS+ICDLLLSKH IYVQAINYPTVPRGEELLRLAPSPHHSPQMME+FVEKLL AW
Sbjct: 481 GNAALNSKICDLLLSKHSIYVQAINYPTVPRGEELLRLAPSPHHSPQMMENFVEKLLLAW 540
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
EVGLPLQDVS+ ACNFC R VHFELMSEWERSYFGN GP
Sbjct: 541 TEVGLPLQDVSVAACNFCHRPVHFELMSEWERSYFGNMGP 580
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1783 LGPQYVTTYA 1812
+GPQYVTTYA
Sbjct: 578 MGPQYVTTYA 587
>ref|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b [Mus musculus].
Length = 572
Score = 1010 bits (2612), Expect(2) = 0.0
Identities = 501/580 (86%), Positives = 526/580 (90%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MVAAAMLL+ CPVL +GPTGLLGK+ KT+QFLF IGRCPILATQGPTCSQIHLKATKAGG
Sbjct: 1 MVAAAMLLRSCPVLSQGPTGLLGKVAKTYQFLFSIGRCPILATQGPTCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
ELQD KSKIVQ+AAPEVQEDVKTFKTDL ++ S + F S Q
Sbjct: 61 ---------------ELQDRKSKIVQRAAPEVQEDVKTFKTDLLSTMDSTTRSHSFPSFQ 105
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
+PE+ HLIQNNM G+ FGYDQFFRDKIMEKKQDHTYRVFKTVNRWA+AYPFA+H
Sbjct: 106 EPEQTEGAVPHLIQNNMTGSQAFGYDQFFRDKIMEKKQDHTYRVFKTVNRWANAYPFAQH 165
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
F EAS+ SKDVSVWCSNDYLG+SRHPRVLQA +ETL+ HGAGAGGTRNISGTSKFHVE+E
Sbjct: 166 FSEASMASKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRNISGTSKFHVELE 225
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAK+LPGCEIYSDAGNHASMIQGIRNSGA KF
Sbjct: 226 QELAELHQKDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGIRNSGAAKF 285
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDP HLKKLLEKS+P TPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH
Sbjct: 286 VFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 345
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYG+RGAGIGERDGIMHK+DIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 346 AVGLYGARGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 405
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRG PVIPCPSHIIPIRV
Sbjct: 406 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRV 465
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNS+ICDLLLSKH IYVQAINYPTVPRGEELLRLAPSPHHSPQMME+FVEKLL AW
Sbjct: 466 GNAALNSKICDLLLSKHSIYVQAINYPTVPRGEELLRLAPSPHHSPQMMENFVEKLLLAW 525
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
EVGLPLQDVS+ ACNFC R VHFELMSEWERSYFGN GP
Sbjct: 526 TEVGLPLQDVSVAACNFCHRPVHFELMSEWERSYFGNMGP 565
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1783 LGPQYVTTYA 1812
+GPQYVTTYA
Sbjct: 563 MGPQYVTTYA 572
>ref|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Mus
musculus].
Length = 642
Score = 709 bits (1830), Expect = 0.0
Identities = 372/638 (58%), Positives = 451/638 (70%), Gaps = 61/638 (9%)
Frame = +2
Query: 71 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQIHL- 211
+++RCP L R P L K K+ LF CP L+T C Q+
Sbjct: 4 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEVGAKPAPRTLSTSAVHCQQVKET 61
Query: 212 -------KATKA----------------------GGDSPSWAK---SHCPFMLSELQDGK 295
K KA G SP+ ++ S CPF+ ++L
Sbjct: 62 PPANEKEKTAKAAVQQAPDESQMAQTPDGTQLPSGHPSPATSQGSGSKCPFLAAQLSQTG 121
Query: 296 SKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDPEKNSKKF--------- 439
S + +KA+ E+QEDV+ + + S SL + +DP + K F
Sbjct: 122 SSVFRKASLELQEDVQEMHAVRKEAAQSPVPPSLVNVKTDGEDPSRLLKNFQDIMRKQRP 181
Query: 440 ---THLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEAS 607
+HL+Q+N+P + F YD FF KI EKK DHTYRVFKTVNR A +P A+ + ++
Sbjct: 182 ERVSHLLQDNLPKSVSTFQYDHFFEKKIDEKKNDHTYRVFKTVNRRAQIFPMADDYTDSL 241
Query: 608 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 787
+ K VSVWCSNDYLGMSRHPRV A ET+++HGAGAGGTRNISGTSKFHVE+EQ LA+
Sbjct: 242 ITKKQVSVWCSNDYLGMSRHPRVCGAVMETVKQHGAGAGGTRNISGTSKFHVELEQALAD 301
Query: 788 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 967
LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNS K++FRHN
Sbjct: 302 LHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHN 361
Query: 968 DPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
D HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLY
Sbjct: 362 DVNHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 421
Query: 1148 GSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPP 1327
G+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPP
Sbjct: 422 GARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSLLIDTVRSYAAGFIFTTSLPP 481
Query: 1328 MVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAAL 1507
M+L+GALESVR+LK EG+ALRR HQRNVK +RQ+LMD GLPVI CPSHIIP+RV +AA
Sbjct: 482 MLLAGALESVRILKSSEGRALRRQHQRNVKLLRQMLMDAGLPVIHCPSHIIPVRVADAAK 541
Query: 1508 NSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGL 1687
N+ ICD L+++H IYVQAINYPTVPRGEELLR+AP+PHH+PQMM FVEKLL W VGL
Sbjct: 542 NTEICDELMTRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNFFVEKLLVTWKRVGL 601
Query: 1688 PLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGPSMS 1801
L+ S CNFCRR +HFE+MSE E++YF +S
Sbjct: 602 ELKPHSSAECNFCRRPLHFEVMSEREKAYFSGMSKMVS 639
>ref|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform a
[Mus musculus].
Length = 416
Score = 234 bits (598), Expect = 1e-61
Identities = 137/352 (38%), Positives = 207/352 (58%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA +TL+ GAG TR I GT H +E ++A HQ++ A+
Sbjct: 67 FCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAI 126
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 127 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 184
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+++C +A QYGAL FVDE HA G G G G
Sbjct: 185 LKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLGPTGRGTD 244
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R + ++F+ SLPP V+ A
Sbjct: 245 ELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPPAVVGCAS 304
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL E A+ ++ + R + G V I P+ +G+A L+S++ D
Sbjct: 305 KALDLLM--ESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSSQMADD 362
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+L K GI+V +YP VP+G+ +R+ S HS E+ +++ + A++EVG
Sbjct: 363 MLKK-GIFVIGFSYPVVPKGKARIRVQISAVHS----EEDIDRCVEAFVEVG 409
>ref|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform b
[Mus musculus].
Length = 382
Score = 208 bits (530), Expect = 1e-53
Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 1/304 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA +TL+ GAG TR I GT H +E ++A HQ++ A+
Sbjct: 67 FCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAI 126
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 127 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 184
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+++C +A QYGAL FVDE HA G G G G
Sbjct: 185 LKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLGPTGRGTD 244
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R + ++F+ SLPP V+ A
Sbjct: 245 ELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPPAVVGCAS 304
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL E A+ ++ + R + G V I P+ +G+A L+S++ D
Sbjct: 305 KALDLLM--ESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSSQMADD 362
Query: 1529 LLSK 1540
+L K
Sbjct: 363 MLKK 366
>ref|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus].
Length = 563
Score = 158 bits (400), Expect = 1e-38
Identities = 109/355 (30%), Positives = 182/355 (51%), Gaps = 16/355 (4%)
Frame = +2
Query: 638 SNDYLGMS-RHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 814
S +YLG++ ++ + ++TL+++G G TRN GT H E+E +AE ++ +
Sbjct: 167 SYNYLGLAGKYDDSMVRVKDTLEKYGVGVASTRNEMGTLDIHKELEDLMAEFLNVEAVMS 226
Query: 815 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 994
F F N + + GC I SD NH S+I G R SGAV F+HN+ E+L+KLL
Sbjct: 227 FGMGFATNAMNIPVF--VGKGCLILSDEFNHTSVILGSRLSGAVIRPFKHNNAENLEKLL 284
Query: 995 EKS----NPVTPK-----IVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
++ P T + ++ E V+SM+G+I L ++ + +Y A ++DE H++G
Sbjct: 285 REAIIRGQPGTGRAWKKILIVVEGVYSMEGSIVNLAQIVALKKKYKAYLYIDEAHSIGCT 344
Query: 1148 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1324
G G G+ E G+ ID+ GT K+F GGYI +++VD +R + + TS+
Sbjct: 345 GPTGRGVRELFGLDPEDIDVYMGTFTKSFSGSGGYIGGKKEIVDYLRMQSHSTTYATSMS 404
Query: 1325 PMVLSGALESVRLLKGEEGQ--ALRRAHQ--RNVKHMRQLLMDRGLPVIPCP-SHIIPIR 1489
P+V + + S+++ G EG + R Q N+K+ R+ L + G + S +IP+
Sbjct: 405 PVVAAQLIRSLKITMGYEGNIGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVL 464
Query: 1490 VGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVE 1654
+ A S LL K I V + +P E R + S H+ +M++ +E
Sbjct: 465 LYMPAKVSAFSRFLLKKK-ISVVVVGFPATSLPEGRARFSMSSAHTREMLDTVLE 518
>ref|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus].
Length = 560
Score = 154 bits (388), Expect = 3e-37
Identities = 101/364 (27%), Positives = 184/364 (50%), Gaps = 23/364 (6%)
Frame = +2
Query: 638 SNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 814
S +YLG +R+ Q A E L+ +GAG TR G H E+E+ +A ++A+
Sbjct: 173 SYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAAMT 232
Query: 815 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 994
+ F N + L + GC I SD NHAS++ G R SGA +F+HN+ + L+KLL
Sbjct: 233 YGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 290
Query: 995 EKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
+ + P ++ E ++SM+G+I L E+ + +Y A ++DE H++G
Sbjct: 291 KDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL 350
Query: 1148 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1324
G G G+ + G+ +D++ GT K+FG GGYI ++L+D +R+++ ++ TS+
Sbjct: 351 GPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSMS 410
Query: 1325 PMVLSGALESVRLLKGEEGQALRR----AHQRNVKHMRQLLMDRGL--------PVIPCP 1468
P V+ + S++ + G++G +L + N ++ R+ L + G PV+P
Sbjct: 411 PPVMEQIITSMKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLM 470
Query: 1469 SHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDF 1648
+ +P ++G + K I V + +P P E R S H+ ++++
Sbjct: 471 LY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTA 522
Query: 1649 VEKL 1660
++++
Sbjct: 523 LKEI 526
>ref|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus].
Length = 473
Score = 125 bits (313), Expect = 2e-28
Identities = 78/265 (29%), Positives = 142/265 (53%), Gaps = 11/265 (4%)
Frame = +2
Query: 608 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 787
V K+ + S ++LG+ +PRV +L+++G G G R GT H+++E+ LA+
Sbjct: 95 VNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAK 154
Query: 788 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 967
+ + A+++S F S + +K G I+ D+ ++ +G++ S + +F+HN
Sbjct: 155 FMKTEEAIIYSYGFSTIASAIPAYSK--RGDIIFVDSAACFAIQKGLQASRSDIKLFKHN 212
Query: 968 DPEHLKKLL------EKSNP----VTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTF 1117
D L++LL ++ NP VT + + E ++ G ICPL EL + ++Y A F
Sbjct: 213 DVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
Query: 1118 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1294
++E + G+ G G G+ E GI + ID+IS + A VGG+ +VD R
Sbjct: 273 LEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSG 332
Query: 1295 AGFIFTTSLPPMVLSGALESVRLLK 1369
G+ F+ SLPP++ + A+E++ +++
Sbjct: 333 QGYCFSASLPPLLAAAAIEALNIME 357
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,649,870
Number of extensions: 2245389
Number of successful extensions: 8210
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8162
Number of HSP's successfully gapped: 10
Length of query: 654
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 546
Effective length of database: 12,373,671
Effective search space: 6756024366
Effective search space used: 6756024366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012800
(1962 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific,... 1098 0.0
Alignment gi|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specif... 1037 0.0
Alignment gi|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specif... 1032 0.0
Alignment gi|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitoch... 701 0.0
Alignment gi|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitoch... 701 0.0
Alignment gi|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 228 2e-59
Alignment gi|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 228 2e-59
Alignment gi|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens]. 172 1e-42
Alignment gi|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens]. 154 2e-37
Alignment gi|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo s... 125 1e-28
>ref|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a precursor [Homo sapiens].
Length = 587
Score = 1098 bits (2840), Expect = 0.0
Identities = 537/580 (92%), Positives = 551/580 (95%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MV AAMLLQ CPVL RGPT LLGK++KTHQFLFGIGRCPILATQGP CSQIHLKATKAGG
Sbjct: 1 MVTAAMLLQCCPVLARGPTSLLGKVVKTHQFLFGIGRCPILATQGPNCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAK HCPFMLSELQDGKSKIVQKAAPEVQEDVK FKTDLP SL S SL+KPFS Q
Sbjct: 61 DSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFKTDLPSSLVSVSLRKPFSGPQ 120
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
+ E+ S K THLIQNNMPGN+ F YDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFA+H
Sbjct: 121 EQEQISGKVTHLIQNNMPGNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQH 180
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
F EASV SKDVSVWCSNDYLGMSRHP+VLQATQETLQRHGAGAGGTRNISGTSKFHVE+E
Sbjct: 181 FSEASVASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELE 240
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGA KF
Sbjct: 241 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKF 300
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDP+HLKKLLEKSNP PKIVAFETVHSMDGAICPLEELCDV+HQYGALTFVDEVH
Sbjct: 301 VFRHNDPDHLKKLLEKSNPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVH 360
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 361 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 420
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 421 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 480
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNS++CDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLL AW
Sbjct: 481 GNAALNSKLCDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAW 540
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
VGLPLQDVS+ ACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 541 TAVGLPLQDVSVAACNFCRRPVHFELMSEWERSYFGNMGP 580
>ref|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
c precursor [Homo sapiens].
Length = 574
Score = 1037 bits (2681), Expect(2) = 0.0
Identities = 514/586 (87%), Positives = 527/586 (89%)
Frame = +2
Query: 35 QNFGLKMVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLK 214
++F KMV AAMLLQ CPVL RGPT LLGK++KTHQFLFGIGRCPILATQGP CSQIHLK
Sbjct: 19 EDFRFKMVTAAMLLQCCPVLARGPTSLLGKVVKTHQFLFGIGRCPILATQGPNCSQIHLK 78
Query: 215 ATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKK 394
ATKAGGDSPSWAK HCPFMLSELQDGKSKIVQKAAPEVQEDVK FKT
Sbjct: 79 ATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFKT------------- 125
Query: 395 PFSSAQDPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADA 574
GN+ F YDQFFRDKIMEKKQDHTYRVFKTVNRWADA
Sbjct: 126 ------------------------GNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADA 161
Query: 575 YPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSK 754
YPFA+HF EASV SKDVSVWCSNDYLGMSRHP+VLQATQETLQRHGAGAGGTRNISGTSK
Sbjct: 162 YPFAQHFSEASVASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSK 221
Query: 755 FHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN 934
FHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN
Sbjct: 222 FHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN 281
Query: 935 SGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALT 1114
SGA KFVFRHNDP+HLKKLLEKSNP PKIVAFETVHSMDGAICPLEELCDV+HQYGALT
Sbjct: 282 SGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALT 341
Query: 1115 FVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1294
FVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA
Sbjct: 342 FVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 401
Query: 1295 AGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSH 1474
AGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSH
Sbjct: 402 AGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSH 461
Query: 1475 IIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVE 1654
IIPIRVGNAALNS++CDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVE
Sbjct: 462 IIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVE 521
Query: 1655 KLLAAWIEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
KLL AW VGLPLQDVS+ ACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 522 KLLLAWTAVGLPLQDVSVAACNFCRRPVHFELMSEWERSYFGNMGP 567
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1783 LGPQYVTTYA 1812
+GPQYVTTYA
Sbjct: 565 MGPQYVTTYA 574
>ref|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b precursor [Homo sapiens].
Length = 550
Score = 1032 bits (2669), Expect(2) = 0.0
Identities = 512/580 (88%), Positives = 523/580 (90%)
Frame = +2
Query: 53 MVAAAMLLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCPILATQGPTCSQIHLKATKAGG 232
MV AAMLLQ CPVL RGPT LLGK++KTHQFLFGIGRCPILATQGP CSQIHLKATKAGG
Sbjct: 1 MVTAAMLLQCCPVLARGPTSLLGKVVKTHQFLFGIGRCPILATQGPNCSQIHLKATKAGG 60
Query: 233 DSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ 412
DSPSWAK HCPFMLSELQDGKSKIVQKAAPEVQEDVK FKT
Sbjct: 61 DSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFKT------------------- 101
Query: 413 DPEKNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEH 592
GN+ F YDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFA+H
Sbjct: 102 ------------------GNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQH 143
Query: 593 FFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVE 772
F EASV SKDVSVWCSNDYLGMSRHP+VLQATQETLQRHGAGAGGTRNISGTSKFHVE+E
Sbjct: 144 FSEASVASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELE 203
Query: 773 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKF 952
QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGA KF
Sbjct: 204 QELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKF 263
Query: 953 VFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVH 1132
VFRHNDP+HLKKLLEKSNP PKIVAFETVHSMDGAICPLEELCDV+HQYGALTFVDEVH
Sbjct: 264 VFRHNDPDHLKKLLEKSNPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVH 323
Query: 1133 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 1312
AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
Sbjct: 324 AVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT 383
Query: 1313 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 1492
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV
Sbjct: 384 TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRV 443
Query: 1493 GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAW 1672
GNAALNS++CDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLL AW
Sbjct: 444 GNAALNSKLCDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAW 503
Query: 1673 IEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYFGNWGP 1792
VGLPLQDVS+ ACNFCRR VHFELMSEWERSYFGN GP
Sbjct: 504 TAVGLPLQDVSVAACNFCRRPVHFELMSEWERSYFGNMGP 543
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1783 LGPQYVTTYA 1812
+GPQYVTTYA
Sbjct: 541 MGPQYVTTYA 550
>ref|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 701 bits (1809), Expect = 0.0
Identities = 343/524 (65%), Positives = 417/524 (79%), Gaps = 16/524 (3%)
Frame = +2
Query: 254 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDPEK 424
S CPF+ +++ S + KA+ E+QEDV+ + ++ + A S+ + DP
Sbjct: 106 SKCPFLAAQMNQRGSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSG 165
Query: 425 NSKKF------------THLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 565
K F +HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 166 LLKNFQDIMQKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 225
Query: 566 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 745
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 226 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 285
Query: 746 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 925
TSKFHV++E+ELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQG
Sbjct: 286 TSKFHVDLERELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQG 345
Query: 926 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 1105
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 346 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 405
Query: 1106 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1285
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 406 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 465
Query: 1286 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPC 1465
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+ LRR HQRNVK MRQ+LMD GLPV+ C
Sbjct: 466 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHC 525
Query: 1466 PSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMED 1645
PSHIIP+RV +AA N+ +CD L+S+H IYVQAINYPTVPRGEELLR+AP+PHH+PQMM
Sbjct: 526 PSHIIPVRVADAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNY 585
Query: 1646 FVEKLLAAWIEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYF 1777
F+E LL W +VGL L+ S CNFCRR +HFE+MSE E+SYF
Sbjct: 586 FLENLLVTWKQVGLELKPHSSAECNFCRRPLHFEVMSEREKSYF 629
>ref|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 701 bits (1809), Expect = 0.0
Identities = 343/524 (65%), Positives = 417/524 (79%), Gaps = 16/524 (3%)
Frame = +2
Query: 254 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDPEK 424
S CPF+ +++ S + KA+ E+QEDV+ + ++ + A S+ + DP
Sbjct: 106 SKCPFLAAQMNQRGSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSG 165
Query: 425 NSKKF------------THLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 565
K F +HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 166 LLKNFQDIMQKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 225
Query: 566 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 745
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 226 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 285
Query: 746 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 925
TSKFHV++E+ELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQG
Sbjct: 286 TSKFHVDLERELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQG 345
Query: 926 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 1105
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 346 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 405
Query: 1106 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1285
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 406 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 465
Query: 1286 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPC 1465
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+ LRR HQRNVK MRQ+LMD GLPV+ C
Sbjct: 466 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHC 525
Query: 1466 PSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMED 1645
PSHIIP+RV +AA N+ +CD L+S+H IYVQAINYPTVPRGEELLR+AP+PHH+PQMM
Sbjct: 526 PSHIIPVRVADAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQMMNY 585
Query: 1646 FVEKLLAAWIEVGLPLQDVSMTACNFCRRTVHFELMSEWERSYF 1777
F+E LL W +VGL L+ S CNFCRR +HFE+MSE E+SYF
Sbjct: 586 FLENLLVTWKQVGLELKPHSSAECNFCRRPLHFEVMSEREKSYF 629
>ref|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 445
Score = 228 bits (580), Expect = 2e-59
Identities = 133/352 (37%), Positives = 203/352 (57%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +E ++A HQ++ A+
Sbjct: 96 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAI 155
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SC+ AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 156 LYPSCYDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 213
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+E+C +A +YGAL F+DE HA G G G G
Sbjct: 214 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTD 273
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 274 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 333
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL G + ++ + R + G + I P+ +G+A L SR+ D
Sbjct: 334 KALDLLMG--SNTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMADD 391
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+L K GI+V +YP VP+G+ +R+ S HS E+ +++ + A++EVG
Sbjct: 392 ML-KRGIFVIGFSYPVVPKGKARIRVQISAVHS----EEDIDRCVEAFVEVG 438
>ref|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 419
Score = 228 bits (580), Expect = 2e-59
Identities = 133/352 (37%), Positives = 203/352 (57%), Gaps = 1/352 (0%)
Frame = +2
Query: 632 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 811
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAI 129
Query: 812 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 991
L+ SC+ AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCYDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 992 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1171
L+++ ++VA + SMDG I PL+E+C +A +YGAL F+DE HA G G G G
Sbjct: 188 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTD 247
Query: 1172 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1348
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1349 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1528
+++ LL G + ++ + R + G + I P+ +G+A L SR+ D
Sbjct: 308 KALDLLMG--SNTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMADD 365
Query: 1529 LLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVG 1684
+L K GI+V +YP VP+G+ +R+ S HS E+ +++ + A++EVG
Sbjct: 366 ML-KRGIFVIGFSYPVVPKGKARIRVQISAVHS----EEDIDRCVEAFVEVG 412
>ref|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens].
Length = 552
Score = 172 bits (435), Expect = 1e-42
Identities = 124/440 (28%), Positives = 223/440 (50%), Gaps = 27/440 (6%)
Frame = +2
Query: 422 KNSKKFTHLIQNNMPGNHFFGYDQFFRDKIMEKKQDHTYR--------VFKTVNRWADAY 577
K K F L Q+ ++ F+ + + +D+ R +F + R +D Y
Sbjct: 98 KEQKDFVPLYQD---------FENFYTRNLYMRIRDNWNRPICSAPGPLFDLMERVSDDY 148
Query: 578 PFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAGAGGTRNISGTSK 754
+ F + KDV S ++LG++ ++ ++ ++ L+ +G G TR+ GT
Sbjct: 149 NWTFRFTGRVI--KDVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLD 206
Query: 755 FHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRN 934
H E+E +A+ ++A++F F N + L + GC I SD NH S++ G R
Sbjct: 207 KHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDELNHTSLVLGARL 264
Query: 935 SGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSMDGAICPLEELCD 1087
SGA +F+HN+ + L+KLL + P T + ++ E V+SM+G+I L ++
Sbjct: 265 SGATIRIFKHNNTQSLEKLLRDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIA 324
Query: 1088 VAHQYGALTFVDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTR 1264
+ +Y A ++DE H++G G G G+ E G+ H++D++ GT K+FG GGYIA +
Sbjct: 325 LKKKYKAYLYIDEAHSIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSFGASGGYIAGRK 384
Query: 1265 DLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALRRAHQ--RNVKHMRQL 1432
DLVD +R ++ ++ +S+ P + + S++L+ G +G Q L+R Q +N ++ RQ
Sbjct: 385 DLVDYLRVHSHSAVYASSMSPPIAEQIIRSLKLIMGLDGTTQGLQRVQQLAKNTRYFRQR 444
Query: 1433 LMDRGLPVIPCP-SHIIPIRV---GNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELL 1600
L + G + + ++P+ + G A +R +L K G+ V + +P P E
Sbjct: 445 LQEMGFIIYGNENASVVPLLLYMPGKVAAFAR--HMLEKKIGVVV--VGFPATPLAEARA 500
Query: 1601 RLAPSPHHSPQMMEDFVEKL 1660
R S H+ +M++ +E L
Sbjct: 501 RFCVSAAHTREMLDTVLEAL 520
>ref|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens].
Length = 562
Score = 154 bits (390), Expect = 2e-37
Identities = 102/364 (28%), Positives = 184/364 (50%), Gaps = 23/364 (6%)
Frame = +2
Query: 638 SNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 814
S +YLG +R+ Q A + L+ +GAG TR G H E+E+ +A ++A+
Sbjct: 175 SYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMA 234
Query: 815 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 994
+ F N + L + GC I SD NHAS++ G R SGA +F+HN+ + L+KLL
Sbjct: 235 YGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 292
Query: 995 EKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 1147
+ + P ++ E ++SM+G+I L E+ + +Y A ++DE H++G
Sbjct: 293 KDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL 352
Query: 1148 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1324
G G G+ E G+ +D++ GT K+FG GGYI ++L+D +R+++ ++ TSL
Sbjct: 353 GPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLS 412
Query: 1325 PMVLSGALESVRLLKGEEGQALRR----AHQRNVKHMRQLLMDRGL--------PVIPCP 1468
P V+ + S++ + G++G +L + N ++ R+ L + G PV+P
Sbjct: 413 PPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLM 472
Query: 1469 SHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSPQMMEDF 1648
+ +P ++G + K I V + +P P E R S H+ ++++
Sbjct: 473 LY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTA 524
Query: 1649 VEKL 1660
++++
Sbjct: 525 LKEI 528
>ref|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo sapiens].
Length = 473
Score = 125 bits (314), Expect = 1e-28
Identities = 77/269 (28%), Positives = 142/269 (52%), Gaps = 11/269 (4%)
Frame = +2
Query: 608 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 787
V K+ + S ++LG+ +PRV A +L+++G G G R GT H+++E LA+
Sbjct: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
Query: 788 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 967
+ + A+++S F S + +K G ++ D ++ +G++ S + +F+HN
Sbjct: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDRAACFAIQKGLQASRSDIKLFKHN 212
Query: 968 DPEHLKKLL------EKSNP----VTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTF 1117
D L++LL ++ NP VT + + E ++ G ICPL EL + ++Y A F
Sbjct: 213 DMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
Query: 1118 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1294
++E + G+ G G G+ E GI + ID+IS + A +GG+ ++D R
Sbjct: 273 LEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSG 332
Query: 1295 AGFIFTTSLPPMVLSGALESVRLLKGEEG 1381
G+ F+ SLPP++ + A+E++ +++ G
Sbjct: 333 QGYCFSASLPPLLAAAAIEALNIMEENPG 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 88,072,771
Number of extensions: 2674540
Number of successful extensions: 9954
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9910
Number of HSP's successfully gapped: 14
Length of query: 654
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 545
Effective length of database: 14,704,088
Effective search space: 8013727960
Effective search space used: 8013727960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012800
(1962 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 541 e-151
Sscrofa_Chr13 82 1e-12
>Sscrofa_ChrX
|| Length = 144288218
Score = 541 bits (273), Expect = e-151
Identities = 273/273 (100%)
Strand = Plus / Minus
Query: 1220 ggcaaggcctttggctgtgtgggtggctacattgccagcactcgtgacttggtggacatg 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814595 ggcaaggcctttggctgtgtgggtggctacattgccagcactcgtgacttggtggacatg 53814536
Query: 1280 gtgcgctcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctct 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814535 gtgcgctcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctct 53814476
Query: 1340 ggggctctggaatccgtgcggctgctcaagggagaggaaggccaagccctgaggcgggcc 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814475 ggggctctggaatccgtgcggctgctcaagggagaggaaggccaagccctgaggcgggcc 53814416
Query: 1400 caccagcgcaatgtcaagcacatgcgccagctactgatggacaggggccttcctgtcatc 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814415 caccagcgcaatgtcaagcacatgcgccagctactgatggacaggggccttcctgtcatc 53814356
Query: 1460 ccatgccctagccacatcatccccattcgggtg 1492
|||||||||||||||||||||||||||||||||
Sbjct: 53814355 ccatgccctagccacatcatccccattcgggtg 53814323
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Minus
Query: 467 ggaaaccatttctttggttatgaccagttttttagggacaagatcatggagaagaaacag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821929 ggaaaccatttctttggttatgaccagttttttagggacaagatcatggagaagaaacag 53821870
Query: 527 gaccacacctaccgtgtgttcaagactgtgaaccgctgggctgatgcttatccctttgcc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821869 gaccacacctaccgtgtgttcaagactgtgaaccgctgggctgatgcttatccctttgcc 53821810
Query: 587 gaacacttctttgaggcatctgtgccctcaaaggatgtgtctgtctggtgcagtaatgac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821809 gaacacttctttgaggcatctgtgccctcaaaggatgtgtctgtctggtgcagtaatgac 53821750
Query: 647 tacctgggcatgagccggcatcctcgagtcttgcaagccacaca 690
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821749 tacctgggcatgagccggcatcctcgagtcttgcaagccacaca 53821706
Score = 410 bits (207), Expect = e-111
Identities = 263/274 (95%), Gaps = 6/274 (2%)
Strand = Plus / Minus
Query: 1652 gagaagctgctggcagcctggattgaggtggggctgcccctccaggatgtatctatgact 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53807954 gagaagctgctggcagcctggattgaggtggggctgcccctccaggatgtatctatgact 53807895
Query: 1712 gcctgcaatttctgtcgccgaactgtgcacttcgagctgatgagtgagtgggaacgttcc 1771
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 53807894 gcctgcaatttctgtcgccgacctgtgcacttcgagctgatgagtgagtgggaacgttcc 53807835
Query: 1772 tactttgggaac-tggggccccagtatgtcaccacctatgcctgagaaaccagcttccnt 1830
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 53807834 tactttgggaacatggggccccagtatgtcaccacctatgcctgagaaaccagcttcctt 53807775
Query: 1831 ggatccccagt-cacctgtacttcac-tggggctaggctg-ctcctgt-ctctgctttgc 1886
||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct: 53807774 ggatccccagtccacctgtacttcacttggggctaggctgcctcctgtcctctgctttgc 53807715
Query: 1887 tgtgtgccctt-actgactgtagtctgaaaataa 1919
|||||||| || ||||||| |||||||||||||
Sbjct: 53807714 tgtgtgcctttaactgacttgagtctgaaaataa 53807681
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 35 cagaacttcgggctcaagatggtggcagcagccatgttgctacagcgttgcccagtgctt 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826454 cagaacttcgggctcaagatggtggcagcagccatgttgctacagcgttgcccagtgctt 53826395
Query: 95 atccggggccccacaggcctcctgggcaagatgattaagactcaccagttcctgtttggt 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826394 atccggggccccacaggcctcctgggcaagatgattaagactcaccagttcctgtttggt 53826335
Query: 155 attggacgctgtcccatcctggccacccaaggaccaacctgttctcaaatccatcttaag 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826334 attggacgctgtcccatcctggccacccaaggaccaacctgttctcaaatccatcttaag 53826275
Query: 215 gcaaccaaggctggagggg 233
|||||||||||||||||||
Sbjct: 53826274 gcaaccaaggctggagggg 53826256
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 691 agagaccctgcagcgtcatggagctggagctggtggcacccgcaacatctcgggtaccag 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821153 agagaccctgcagcgtcatggagctggagctggtggcacccgcaacatctcgggtaccag 53821094
Query: 751 taagtttcatgtcgaggtggagcaggagctggctgaattgcaccagaaggattcagccct 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821093 taagtttcatgtcgaggtggagcaggagctggctgaattgcaccagaaggattcagccct 53821034
Query: 811 actcttctcttcctgttttgtggccaatgactccactctcttcaccttggccaagatcct 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821033 actcttctcttcctgttttgtggccaatgactccactctcttcaccttggccaagatcct 53820974
Query: 871 gccagg 876
||||||
Sbjct: 53820973 gccagg 53820968
Score = 367 bits (185), Expect = 2e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 873 cagggtgtgagatttattcagatgcaggcaaccatgcttcaatgatccaaggtatccgca 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53818234 cagggtgtgagatttattcagatgcaggcaaccatgcttcaatgatccaaggtatccgca 53818175
Query: 933 atagtggagcagtcaaatttgtcttcaggcacaatgaccctgagcatctgaagaagcttc 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53818174 atagtggagcagtcaaatttgtcttcaggcacaatgaccctgagcatctgaagaagcttc 53818115
Query: 993 tagagaagtccaaccccgtgacacccaaaattgtggcctttgagactgttcactccatgg 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53818114 tagagaagtccaaccccgtgacacccaaaattgtggcctttgagactgttcactccatgg 53818055
Query: 1053 atggt 1057
|||||
Sbjct: 53818054 atggt 53818050
Score = 331 bits (167), Expect = 9e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 1055 ggtgccatctgtccccttgaagagttgtgtgatgtggctcaccagtatggggctctgact 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53815330 ggtgccatctgtccccttgaagagttgtgtgatgtggctcaccagtatggggctctgact 53815271
Query: 1115 tttgtggatgaggttcatgctgtaggactgtatgggtcccgaggcgctgggattggggag 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53815270 tttgtggatgaggttcatgctgtaggactgtatgggtcccgaggcgctgggattggggag 53815211
Query: 1175 cgtgatggaattatgcataagattgacatcatctctggaactcttgg 1221
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53815210 cgtgatggaattatgcataagattgacatcatctctggaactcttgg 53815164
Score = 325 bits (164), Expect = 5e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 1489 ggtgggcaatgcagcactgaacagcaggatatgtgacctccttctctccaagcatggaat 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53812703 ggtgggcaatgcagcactgaacagcaggatatgtgacctccttctctccaagcatggaat 53812644
Query: 1549 ctatgtgcaggccatcaactacccaactgtccccaggggtgaggagctgctgcgcctggc 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53812643 ctatgtgcaggccatcaactacccaactgtccccaggggtgaggagctgctgcgcctggc 53812584
Query: 1609 accctccccccaccacagccctcagatgatggaagactttgtgg 1652
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53812583 accctccccccaccacagccctcagatgatggaagactttgtgg 53812540
Score = 238 bits (120), Expect = 1e-59
Identities = 123/124 (99%)
Strand = Plus / Minus
Query: 233 gactctccatcttgggccaagagccactgtcccttcatgctgtcggaactccaggatggg 292
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825600 gactctccatcttgggctaagagccactgtcccttcatgctgtcggaactccaggatggg 53825541
Query: 293 aagagtaagattgtgcagaaggcagccccagaagttcaagaggatgtgaagactttcaag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825540 aagagtaagattgtgcagaaggcagccccagaagttcaagaggatgtgaagactttcaag 53825481
Query: 353 acag 356
||||
Sbjct: 53825480 acag 53825477
Score = 212 bits (107), Expect = 5e-52
Identities = 113/115 (98%)
Strand = Plus / Minus
Query: 354 cagacctccccatctccctggcctcagccagcttgaagaagccattctccagtgcccagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53824650 cagacctccccatctccctggcctcagccagcttgaagaagccattctccagtgcccagg 53824591
Query: 414 atccagagaaaaattcaaagaagttcacacacctgattcagaacaatatgcctgg 468
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 53824590 atccagagaaaaattcaaagaaagtcacacacctgattcagaacaatatgcctgg 53824536
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 2 acccgtcgttcgttcgtcctcagtgcagggcaacag 37
||||||||||||||||||||||||||||||||||||
Sbjct: 53832126 acccgtcgttcgttcgtcctcagtgcagggcaacag 53832091
>Sscrofa_Chr13
|| Length = 218635234
Score = 81.8 bits (41), Expect = 1e-12
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 1073 gaagagttgtgtgatgtggctcaccagtatggggctctgacttttgtggatgaggttcat 1132
|||||| ||||||||||||||||| ||| ||| || | || || ||||||||||| |||
Sbjct: 37662435 gaagagctgtgtgatgtggctcacgagtttggagccatcaccttcgtggatgaggtccat 37662376
Query: 1133 gctgtaggactgtatgggtcccgaggcgctgggattggggagcgtgatggaattatgcat 1192
|| || || ||||||||| | | ||||| |||||||| || || |||||| ||||||
Sbjct: 37662375 gcagtggggctgtatggggctcaaggcggagggattggcgatcgggatggagttatgcca 37662316
Query: 1193 aagattgacatcatctctggaactcttgg 1221
|| || |||||||| ||||||||||||||
Sbjct: 37662315 aaaatggacatcatttctggaactcttgg 37662287
Score = 63.9 bits (32), Expect = 3e-07
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 1286 tcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctctggggct 1345
||||| || ||||| |||||||||||||| || ||||| ||||||||||| |||| ||
Sbjct: 37660581 tcctacgcggctggcttcatcttcaccacctccctgccacccatggtgctggctggagcc 37660522
Query: 1346 ctggaatccgtgcggctgctcaag 1369
|||||||| |||||| | ||||||
Sbjct: 37660521 ctggaatctgtgcggatcctcaag 37660498
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,203,158
Number of extensions: 380
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 13
Length of query: 1962
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1940
Effective length of database: 2,808,408,574
Effective search space: 5448312633560
Effective search space used: 5448312633560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)