Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012802
(1630 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthas... 916 0.0
Alignment gi|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthas... 639 0.0
Alignment gi|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthas... 638 0.0
Alignment gi|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthas... 638 0.0
Alignment gi|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthas... 637 0.0
Alignment gi|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthas... 636 0.0
Alignment gi|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthas... 634 0.0
Alignment gi|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate co... 223 4e-58
Alignment gi|XP_542889.2| PREDICTED: similar to serine palmitoyltransfera... 159 1e-38
Alignment gi|XP_537524.2| PREDICTED: similar to serine palmitoyltransfera... 146 5e-35
>ref|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthase, erythroid-specific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-E) [Canis familiaris].
Length = 587
Score = 916 bits (2367), Expect = 0.0
Identities = 455/515 (88%), Positives = 477/515 (92%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQ PT SQIHLKATKAGGDSP WAKS CPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQRPTFSQIHLKATKAGGDSPPWAKSPCPFMLSELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVKTFKTDLP S AS SL+KPFS+ Q+ E S+KVTHL+QNNM GNH FGYDQFFR KI
Sbjct: 94 EDVKTFKTDLPRSPASTSLRKPFSNPQELELISEKVTHLVQNNMIGNHVFGYDQFFRHKI 153
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFA+HF EAS+ SKDVSVWCSNDYLGMSRHPRVLQATQ
Sbjct: 154 MEKKQDHTYRVFKTVNRWADAYPFAQHFSEASMASKDVSVWCSNDYLGMSRHPRVLQATQ 213
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVE+EQELAELHQKD+ALLFSSCFVANDSTLFTLAKIL
Sbjct: 214 ETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDAALLFSSCFVANDSTLFTLAKIL 273
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP+HLKKLL++SN TPKIVAFETVHSM
Sbjct: 274 PGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKESNTRTPKIVAFETVHSM 333
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDVAHQYGALTFVDEVHAVGLYG +GAGIGERDG+MHKIDI+SGTLGKAF
Sbjct: 334 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGPQGAGIGERDGVMHKIDIVSGTLGKAF 393
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 394 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 453
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVG+AALNS+ICDLLL KHGIYVQAINYPTVPRGE
Sbjct: 454 VKHMRQLLMDRGLPVIPCPSHIIPIRVGDAALNSKICDLLLSKHGIYVQAINYPTVPRGE 513
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + + VG P Q
Sbjct: 514 ELLRLAPSPHHSPQMMEDFVQKLLVAWTEVGLPLQ 548
Score = 87.0 bits (214), Expect = 5e-17
Identities = 43/70 (61%), Positives = 44/70 (62%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLL GLP DVSM ACNFC R VHFEL
Sbjct: 507 PTVPRGEELLRLAPSPHHSPQMMEDFVQKLLVAWTEVGLPLQDVSMAACNFCHRPVHFEL 566
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 567 MSEWERSYFG 576
>ref|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 5 [Canis familiaris].
Length = 625
Score = 639 bits (1648), Expect = 0.0
Identities = 319/515 (61%), Positives = 396/515 (76%), Gaps = 32/515 (6%)
Frame = +3
Query: 24 LATQGPTCSQI-------HLKATKAGGDSPSW---------AKSHCPFMLSELQDGKSKI 155
L+T C Q+ T+A G+ PS S CPF+ +++ S +
Sbjct: 48 LSTSAVHCQQVKETPPANEKAETQAEGELPSGHSSLATSQGTASKCPFLAAQMSQKGSSV 107
Query: 156 VQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDP------------EKNSKKV 290
+KA+ E+QEDV+ + ++ + + S+ + DP ++ ++V
Sbjct: 108 FRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRPERV 167
Query: 291 THLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPS 467
+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ +
Sbjct: 168 SHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITK 227
Query: 468 KDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQ 647
K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISGTSKFHV++EQELA+LH
Sbjct: 228 KQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHG 287
Query: 648 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPE 827
KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQGIRNS K++FRHND
Sbjct: 288 KDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVS 347
Query: 828 HLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSR 1007
HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG+R
Sbjct: 348 HLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGAR 407
Query: 1008 GAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVL 1187
G GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L
Sbjct: 408 GGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLL 467
Query: 1188 SGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSR 1367
+GALESVR+LK EG+AL+R HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV NAA N+
Sbjct: 468 AGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTE 527
Query: 1368 ICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
+CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 528 VCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 562
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LLA GL S CNFCRR +HFE+
Sbjct: 546 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHFEV 605
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 606 MSEREKSYF 614
>ref|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 1 [Canis familiaris].
Length = 640
Score = 638 bits (1645), Expect = 0.0
Identities = 310/472 (65%), Positives = 383/472 (81%), Gaps = 16/472 (3%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDP-- 269
S CPF+ +++ S + +KA+ E+QEDV+ + ++ + + S+ + DP
Sbjct: 106 SKCPFLAAQMSQKGSSVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSG 165
Query: 270 ----------EKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 416
++ ++V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 166 LLRNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 225
Query: 417 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 596
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 226 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 285
Query: 597 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 776
TSKFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQG
Sbjct: 286 TSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQG 345
Query: 777 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 956
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 346 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 405
Query: 957 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1136
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 406 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 465
Query: 1137 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPC 1316
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+AL+R HQRNVK MRQ+LMD GLPV+ C
Sbjct: 466 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHC 525
Query: 1317 PSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
PSHIIP+RV NAA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 526 PSHIIPVRVANAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 577
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LLA GL S CNFCRR +HFE+
Sbjct: 561 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHFEV 620
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 621 MSEREKSYF 629
>ref|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 6 [Canis familiaris].
Length = 623
Score = 638 bits (1645), Expect = 0.0
Identities = 310/472 (65%), Positives = 383/472 (81%), Gaps = 16/472 (3%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDP-- 269
S CPF+ +++ S + +KA+ E+QEDV+ + ++ + + S+ + DP
Sbjct: 89 SKCPFLAAQMSQKGSSVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSG 148
Query: 270 ----------EKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 416
++ ++V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 149 LLRNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 208
Query: 417 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 596
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 209 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 268
Query: 597 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 776
TSKFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQG
Sbjct: 269 TSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQG 328
Query: 777 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 956
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 329 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 388
Query: 957 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1136
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 389 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 448
Query: 1137 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPC 1316
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+AL+R HQRNVK MRQ+LMD GLPV+ C
Sbjct: 449 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHC 508
Query: 1317 PSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
PSHIIP+RV NAA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 509 PSHIIPVRVANAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 560
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LLA GL S CNFCRR +HFE+
Sbjct: 544 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHFEV 603
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 604 MSEREKSYF 612
>ref|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 2 [Canis familiaris].
Length = 629
Score = 637 bits (1643), Expect = 0.0
Identities = 310/470 (65%), Positives = 381/470 (81%), Gaps = 14/470 (2%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKK-PFSSAQDP---- 269
S CPF+ +++ S + +KA+ E+QEDV+ + +++K + DP
Sbjct: 97 SKCPFLAAQMSQKGSSVFRKASLELQEDVQEMHAVRKGKHMTGTIRKNEEADGGDPSGLL 156
Query: 270 --------EKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWAD 422
++ ++V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A
Sbjct: 157 RNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAH 216
Query: 423 AYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTS 602
+P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISGTS
Sbjct: 217 IFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTS 276
Query: 603 KFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIR 782
KFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQGIR
Sbjct: 277 KFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIR 336
Query: 783 NSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGAL 962
NS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+
Sbjct: 337 NSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAI 396
Query: 963 TFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSY 1142
TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VRSY
Sbjct: 397 TFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSY 456
Query: 1143 AAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPS 1322
AAGFIFTTSLPPM+L+GALESVR+LK EG+AL+R HQRNVK MRQ+LMD GLPV+ CPS
Sbjct: 457 AAGFIFTTSLPPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPS 516
Query: 1323 HIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
HIIP+RV NAA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 517 HIIPVRVANAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 566
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LLA GL S CNFCRR +HFE+
Sbjct: 550 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHFEV 609
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 610 MSEREKSYF 618
>ref|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 3 [Canis familiaris].
Length = 628
Score = 636 bits (1640), Expect = 0.0
Identities = 312/472 (66%), Positives = 382/472 (80%), Gaps = 16/472 (3%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFK----------TDLPISLAS-----ASL 239
S CPF+ +++ S + +KA+ E+QEDV+ T IS+ + + L
Sbjct: 95 SKCPFLAAQMSQKGSSVFRKASLELQEDVQEMHAVRKGKHMTGTPSVISVKADGGDPSGL 154
Query: 240 KKPFSSAQDPEKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 416
+ F ++ ++V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 155 LRNFQDIMRKQR-PERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 213
Query: 417 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 596
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 214 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 273
Query: 597 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 776
TSKFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIYSD+GNHASMIQG
Sbjct: 274 TSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQG 333
Query: 777 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 956
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 334 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 393
Query: 957 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1136
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 394 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 453
Query: 1137 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPC 1316
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+AL+R HQRNVK MRQ+LMD GLPV+ C
Sbjct: 454 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHC 513
Query: 1317 PSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
PSHIIP+RV NAA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 514 PSHIIPVRVANAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 565
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LLA GL S CNFCRR +HFE+
Sbjct: 549 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHFEV 608
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 609 MSEREKSYF 617
>ref|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 4 [Canis familiaris].
Length = 642
Score = 634 bits (1636), Expect = 0.0
Identities = 312/484 (64%), Positives = 382/484 (78%), Gaps = 28/484 (5%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTDLPISLASASLKKPFSSAQ------- 263
S CPF+ +++ S + +KA+ E+QEDV+ + +++K AQ
Sbjct: 96 SKCPFLAAQMSQKGSSVFRKASLELQEDVQEMHAVRKGKHMTGTIRKNEEVAQTSVNPSV 155
Query: 264 --------DP------------EKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQD 380
DP ++ ++V+HL+Q+N+P + F YD+FF KI EKK D
Sbjct: 156 ISVKADGGDPSGLLRNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKND 215
Query: 381 HTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRH 560
HTYRVFKTVNR A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++H
Sbjct: 216 HTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQH 275
Query: 561 GAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIY 740
GAGAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLA+++PGCEIY
Sbjct: 276 GAGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIY 335
Query: 741 SDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICP 920
SD+GNHASMIQGIRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CP
Sbjct: 336 SDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCP 395
Query: 921 LEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGY 1100
LEELCDVAH++GA+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGY
Sbjct: 396 LEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGY 455
Query: 1101 IASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQ 1280
IAST L+D VRSYAAGFIFTTSLPPM+L+GALESVR+LK EG+AL+R HQRNVK MRQ
Sbjct: 456 IASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQ 515
Query: 1281 LLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLA 1460
+LMD GLPV+ CPSHIIP+RV NAA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+A
Sbjct: 516 MLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIA 575
Query: 1461 PSPH 1472
P+PH
Sbjct: 576 PTPH 579
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LLA GL S CNFCRR +HFE+
Sbjct: 563 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRRPLHFEV 622
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 623 MSEREKSYF 631
>ref|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial precursor (AKB ligase) (Glycine
acetyltransferase) [Canis familiaris].
Length = 419
Score = 223 bits (568), Expect = 4e-58
Identities = 129/326 (39%), Positives = 191/326 (58%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA + L+ GAG TR I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSTRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDAN-AGLFE-ALLSPQDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+E+C +A +YGAL FVDE HA G G+ G G
Sbjct: 188 LQEAQNHRLRLVATDGAFSMDGDIAPLQEICHLASRYGALVFVDECHATGFLGATGRGTD 247
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL E A+ ++ K R + G V+ I P+ +G+A L S + D
Sbjct: 308 KALDLLM--ESNAIVQSMAAKTKRFRSKMEAAGFTVLGASHPICPVMLGDARLASCMAD- 364
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+LK GI+V +YP VP+ + +R+
Sbjct: 365 DMLKRGIFVIGFSYPVVPKNKARIRV 390
>ref|XP_542889.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 552
Score = 159 bits (401), Expect = 1e-38
Identities = 113/380 (29%), Positives = 193/380 (50%), Gaps = 23/380 (6%)
Frame = +3
Query: 396 FKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSR-HPRVLQATQETLQRHGAGA 572
F + R +D Y + F + KDV S ++LG++ + ++ ++ L+ +G G
Sbjct: 138 FDVMERVSDDYNWTFRFTGRII--KDVINMGSYNFLGLAASYDESMRTVKDVLEEYGLGV 195
Query: 573 GGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAG 752
TR+ GT H E+E +A+ ++A++F F N + L + GC I SD
Sbjct: 196 ASTRHEMGTLDKHEELENLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDEL 253
Query: 753 NHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSMD 905
NHAS++ G R SGA +F+HN+ + L+KLL + P + ++ E ++SM+
Sbjct: 254 NHASLVLGARLSGATIRIFKHNNMQSLEKLLRDAVIYGQPRVRRAWKKILILVEGIYSME 313
Query: 906 GAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKAF 1082
G+I L ++ + +Y A ++DE H++G G G G+ E G+ + +D++ GT K+F
Sbjct: 314 GSIVHLPQIVALKKKYKAYLYIDEAHSIGSVGPTGRGVVEFFGLDPRDVDVLMGTFTKSF 373
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALKRAHQ 1256
G GGYIA ++LVD +R ++ ++ TS+ P V + S++L+ G +G + L+R Q
Sbjct: 374 GAAGGYIAGRKELVDYLRVHSHSAVYATSMSPPVAEQIIRSMKLIMGLDGTTEGLQRVRQ 433
Query: 1257 --RNVKHMRQLLMDRGL--------PVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYV 1406
+N ++ RQ L + G PVIP + +P +V A + LL I V
Sbjct: 434 LAKNTRYFRQRLNEMGFIIYGNEESPVIPLLLY-MPAKVAAFARH-------LLNRKIGV 485
Query: 1407 QAINYPTVPRGEELLRLAPS 1466
+ +P P E R S
Sbjct: 486 VVVGFPATPLAEARARFCIS 505
>ref|XP_537524.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 691
Score = 146 bits (369), Expect = 5e-35
Identities = 101/349 (28%), Positives = 175/349 (50%), Gaps = 23/349 (6%)
Frame = +3
Query: 489 SNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 665
S +YLG +R+ Q A + L+ +G G TR G H E+E+ +A ++A+
Sbjct: 304 SYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFLGVEAAMA 363
Query: 666 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 845
+ F N + L + GC I SD NHAS++ G R SGA +F+HN+ + L+KLL
Sbjct: 364 YGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 421
Query: 846 EKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 998
+ + P ++ E ++SM+G+I L E+ + +Y A ++DE H++G
Sbjct: 422 KDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL 481
Query: 999 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1175
G G G+ + G+ +D++ GT K+FG GGYI ++L+D +R+++ ++ TSL
Sbjct: 482 GPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLS 541
Query: 1176 PMVLSGALESVRLLKGEEGQAL-KRAHQR---NVKHMRQLLMDRGL--------PVIPCP 1319
V+ + S++ + G++G L K+ Q+ N ++ R+ L + G PV+P
Sbjct: 542 APVVEQIVTSMKCIMGQDGTTLGKQCIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLM 601
Query: 1320 SHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPS 1466
+ +P ++G +LK I V + +P P E R S
Sbjct: 602 LY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLS 642
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,701,735
Number of extensions: 2169645
Number of successful extensions: 7752
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7705
Number of HSP's successfully gapped: 18
Length of query: 543
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 435
Effective length of database: 15,274,216
Effective search space: 6644283960
Effective search space used: 6644283960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012802
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012802
(1630 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specif... 944 0.0
Alignment gi|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mit... 635 0.0
Alignment gi|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 216 6e-56
Alignment gi|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long... 160 2e-39
Alignment gi|XP_602826.3| PREDICTED: serine palmitoyltransferase, long ch... 155 8e-38
Alignment gi|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus]. 148 2e-35
Alignment gi|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus]. 124 2e-28
>ref|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial
precursor [Bos taurus].
Length = 587
Score = 944 bits (2441), Expect = 0.0
Identities = 469/515 (91%), Positives = 483/515 (93%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGP+ SQIHLKATKAGGDSPSWAKSHCPFML ELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQGPSFSQIHLKATKAGGDSPSWAKSHCPFMLLELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVKTFKTDLP SLAS SLKK FSS Q+PEKNS+KVTHLIQNNM G+H FGYDQFFRDKI
Sbjct: 94 EDVKTFKTDLPTSLASTSLKKTFSSPQEPEKNSEKVTHLIQNNMAGDHVFGYDQFFRDKI 153
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASV SKDVSVWCSNDYLGMSRHPRVLQATQ
Sbjct: 154 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVASKDVSVWCSNDYLGMSRHPRVLQATQ 213
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
E LQRHGAGAGGTRNISGTSKFHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 214 EILQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 273
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP+HLKKLL+KSNP TPKIVAFETVHSM
Sbjct: 274 PGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKKSNPETPKIVAFETVHSM 333
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 334 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 393
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 394 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 453
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVG+A LN+RICDLLL K+GIYVQAINYPTVPRGE
Sbjct: 454 VKHMRQLLMDRGLPVIPCPSHIIPIRVGDAMLNTRICDLLLSKYGIYVQAINYPTVPRGE 513
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + VG P Q
Sbjct: 514 ELLRLAPSPHHSPQMMEDFVEKLLEAWTEVGLPLQ 548
Score = 86.7 bits (213), Expect = 6e-17
Identities = 42/70 (60%), Positives = 45/70 (64%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLL GLP D+S+ ACNFCRR VHFEL
Sbjct: 507 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLEAWTEVGLPLQDISIAACNFCRRPVHFEL 566
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 567 MSEWERSYFG 576
>ref|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Bos
taurus].
Length = 647
Score = 635 bits (1639), Expect = 0.0
Identities = 316/510 (61%), Positives = 390/510 (76%), Gaps = 21/510 (4%)
Frame = +3
Query: 6 IGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSH-----CPFMLSELQDGKSKIVQKAA 170
+ + P + Q P SQ T+ PS A S CPF+ +E+ G S + +KA+
Sbjct: 75 VQQAPDGSQQAPDGSQQTADGTQLPSGHPSLASSQGTGSKCPFLAAEMSQGGSSVFRKAS 134
Query: 171 PEVQEDVKTFK-------------TDLPISLASASLKKPFSSAQD--PEKNSKKVTHLIQ 305
+QEDV+ + + + L + QD ++ ++V+HL+Q
Sbjct: 135 LALQEDVQEMHAVREEVAQTSVNPSVINVKTEGGELNGLLKNFQDIMRKQRPERVSHLLQ 194
Query: 306 NNMPGNHF-FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSV 482
+N+P + F YD+FF KI EKK DH+YRVFKTVNR A +P A+ + ++ + K VSV
Sbjct: 195 DNLPKSVCTFQYDRFFEKKIDEKKNDHSYRVFKTVNRKAQCFPMADDYSDSLISKKQVSV 254
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
WCSNDYLGMSRHPRV A +TL++HG GAGGTRNISGTSKFHV++EQELA+LH KD+AL
Sbjct: 255 WCSNDYLGMSRHPRVCGAVIDTLKQHGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 314
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
LFSSCFVANDSTLFTLAK++PGCEIYSDAGNHASMIQGIRNSG K++FRHND HL++L
Sbjct: 315 LFSSCFVANDSTLFTLAKMMPGCEIYSDAGNHASMIQGIRNSGVPKYIFRHNDVSHLREL 374
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLYG +G GIG
Sbjct: 375 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGLQGGGIG 434
Query: 1023 ERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALE 1202
+RDG+M K+DIISGTLGKA GCVGGYIAST L+D VRSYAAGFIFTTSLPPM+L+GALE
Sbjct: 435 DRDGVMPKMDIISGTLGKAIGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALE 494
Query: 1203 SVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLL 1382
SVR+L+ EG+ L+R HQRNVK MRQ+LMD GLPV+ CPSHIIP+RV +AA N+ +CD L
Sbjct: 495 SVRILRSTEGRTLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVCDEL 554
Query: 1383 LLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 555 MTRHNIYVQAINYPTVPRGEELLRIAPTPH 584
Score = 58.2 bits (139), Expect = 2e-08
Identities = 31/69 (44%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM FV LLA GL S CNFCRR +HFE+
Sbjct: 568 PTVPRGEELLRIAPTPHHTPQMMSYFVDNLLATWKRVGLELKPHSSAECNFCRRPLHFEM 627
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 628 MSEREKSYF 636
>ref|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial precursor
[Bos taurus].
Length = 419
Score = 216 bits (549), Expect = 6e-56
Identities = 125/326 (38%), Positives = 183/326 (56%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA TL+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLRTLKEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SCF AN L + + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDANTGLFEAL--LTSEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+E+C +A QYGAL FVDE HA G G+ G G
Sbjct: 188 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICRLASQYGALVFVDESHATGFLGATGRGTD 247
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP + A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGALVSLLRQRARPYLFSNSLPPAAVGCAS 307
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL E A+ ++ R + G + I P+ +G+A L I D
Sbjct: 308 KALDLLM--ESNAIVQSMAAKTLRFRSQMEAAGFTISGANHPICPVMLGDARLALNIAD- 364
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+LK GI+V +YP VP+G+ +R+
Sbjct: 365 DMLKRGIFVIGFSYPVVPKGKARIRV 390
>ref|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long chain base subunit
2-like [Bos taurus].
Length = 549
Score = 160 bits (406), Expect = 2e-39
Identities = 116/381 (30%), Positives = 192/381 (50%), Gaps = 23/381 (6%)
Frame = +3
Query: 393 VFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAG 569
VF + R D Y + F + KDV S ++LG++ ++ ++ +E ++ +G G
Sbjct: 134 VFDVMERVTDDYNWTFRFTGRII--KDVINMGSYNFLGLAAKYDESMRTVKEVIETYGLG 191
Query: 570 AGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDA 749
G TR GT H E+E +A+ ++A++F F N + L + GC I SD
Sbjct: 192 VGSTRQEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDE 249
Query: 750 GNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSM 902
NHAS++ G R SGA +F+HN+ + L+KLL + P T + ++ E ++SM
Sbjct: 250 LNHASLVLGARLSGATIRIFKHNNVQSLEKLLRDAVIYGQPRTRRAWRKILILVEGIYSM 309
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKA 1079
+G+I L ++ + +Y A ++DE H++G G G G+ E G+ + ID+ GT K+
Sbjct: 310 EGSIVHLPDIVALKKKYKAYLYMDEAHSIGSVGPTGRGVVEFFGLDPRDIDVYMGTFTKS 369
Query: 1080 FGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALKRAH 1253
FG GGYIA +DLVD +R+++ + TS+ P V + ++L+ G +G + L+R
Sbjct: 370 FGAAGGYIAGRKDLVDYLRTHSHSAAYGTSMSPPVAEQIIRVMKLIMGLDGTTEGLQRVQ 429
Query: 1254 Q--RNVKHMRQLLMDRGL--------PVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIY 1403
Q +N ++ RQ L G PV+P + +P +V A + LL I
Sbjct: 430 QLAKNTRYFRQRLSKMGFIVYGNEESPVVPLLLY-MPAKVAAFARH-------LLNRKIG 481
Query: 1404 VQAINYPTVPRGEELLRLAPS 1466
V + +P P E R S
Sbjct: 482 VVVVGFPATPLAEARARFCVS 502
>ref|XP_602826.3| PREDICTED: serine palmitoyltransferase, long chain base subunit 2
[Bos taurus].
Length = 469
Score = 155 bits (393), Expect = 8e-38
Identities = 104/330 (31%), Positives = 174/330 (52%), Gaps = 23/330 (6%)
Frame = +3
Query: 393 VFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAG 569
VF + R D Y + F + KDV S ++LG++ ++ ++ +E ++ +G G
Sbjct: 134 VFDVMERVTDDYNWTFRFTGRII--KDVINMGSYNFLGLAAKYDESMRTVKEVIETYGLG 191
Query: 570 AGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDA 749
G TR GT H E+E +A+ ++A++F F N + L + GC I SD
Sbjct: 192 VGSTRQEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDE 249
Query: 750 GNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSM 902
NHAS++ G R SGA +F+HN+ + L+KLL + P T + ++ E ++SM
Sbjct: 250 LNHASLVLGARLSGATIRIFKHNNVQSLEKLLRDAVIYGQPRTRRAWRKILILVEGIYSM 309
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKA 1079
+G+I L ++ + +Y A ++DE H++G G G G+ E G+ + ID+ GT K+
Sbjct: 310 EGSIVHLPDIVALKKKYKAYLYMDEAHSIGSVGPTGRGVVEFFGLDPRDIDVYMGTFTKS 369
Query: 1080 FGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALKRAH 1253
FG GGYIA +DLVD +R+++ + TS+ P V + ++L+ G +G + L+R
Sbjct: 370 FGAAGGYIAGRKDLVDYLRTHSHSAAYGTSMSPPVAEQIIRVMKLIMGLDGTTEGLQRVQ 429
Query: 1254 Q--RNVKHMRQLLMDRGL--------PVIP 1313
Q +N ++ RQ L G PV+P
Sbjct: 430 QLAKNTRYFRQRLSKMGFIVYGNEESPVVP 459
>ref|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus].
Length = 562
Score = 148 bits (373), Expect = 2e-35
Identities = 106/356 (29%), Positives = 175/356 (49%), Gaps = 23/356 (6%)
Frame = +3
Query: 468 KDVSVWCSNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELH 644
KDV S +YLG +R+ Q A + L+ +G G TR G H E+E+ +A
Sbjct: 168 KDVINMGSYNYLGFARNTGPCQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVANFL 227
Query: 645 QKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDP 824
++A+ + F N + L + GC I SD NHAS++ G R SGA VF+HN+
Sbjct: 228 GVEAAMAYGMGFATNSMNIPAL--VSKGCLILSDELNHASLVLGARLSGATIRVFKHNNM 285
Query: 825 EHLKKLLEKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDE 977
+ L+KLL+ + P ++ E ++SM+G+I L E+ + +Y A ++DE
Sbjct: 286 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 345
Query: 978 VHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGF 1154
H++G G G G+ + G+ +DI+ GT K+FG GGYI + L+D +R+++
Sbjct: 346 AHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKALIDYLRTHSHSA 405
Query: 1155 IFTTSLPPMVLSGALESVRLLKGEEGQAL-KRAHQR---NVKHMRQLLMDRGL------- 1301
++ SL P V + +++ + G++G L K Q+ NV++ R+ L G
Sbjct: 406 VYAASLSPPVAEQIITAMKCIMGQDGTTLGKECIQQLAENVRYFRRRLKSMGFIIYGNED 465
Query: 1302 -PVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPS 1466
PV+P + +P ++G +LK I V + +P P E R S
Sbjct: 466 SPVVPLMLY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLS 513
>ref|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus].
Length = 473
Score = 124 bits (311), Expect = 2e-28
Identities = 78/283 (27%), Positives = 147/283 (51%), Gaps = 17/283 (6%)
Frame = +3
Query: 459 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 638
V K+ + S ++LG+ +PR+ A +L+++G G G R GT H+++E LA+
Sbjct: 95 VNGKECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
Query: 639 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 818
+ + A+++S F S + +K G ++ D ++ +G++ S + VF HN
Sbjct: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDKAACFAIQKGLQASRSDIKVFNHN 212
Query: 819 DPEHLKKLL------EKSNP----VTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTF 968
D + L++LL ++ NP VT + + E ++ G +CPL EL + ++Y A F
Sbjct: 213 DMDDLERLLKEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPELVKLKYKYKARIF 272
Query: 969 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1145
++E + G+ G G G+ E GI + ID+IS + + +GG+ ++D R
Sbjct: 273 LEESLSFGVLGEHGRGVTEHFGISIDDIDLISANMENSLASIGGFCCGRSFVIDHQRLSG 332
Query: 1146 AGFIFTTSLPPMVLSGALESVRLLKGEEG------QALKRAHQ 1256
G+ F+ SLPP++ + A+E++ +++ G + KR H+
Sbjct: 333 QGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCKRIHK 375
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,852,408
Number of extensions: 2123439
Number of successful extensions: 7615
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7568
Number of HSP's successfully gapped: 9
Length of query: 543
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 436
Effective length of database: 14,140,958
Effective search space: 6165457688
Effective search space used: 6165457688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012802
(1630 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, eryth... 993 0.0
Alignment gi|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, eryth... 903 0.0
Alignment gi|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, eryth... 903 0.0
Alignment gi|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonsp... 620 e-178
Alignment gi|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 217 1e-56
Alignment gi|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 217 1e-56
Alignment gi|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Su... 162 5e-40
Alignment gi|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, pa... 152 4e-37
>ref|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 587
Score = 993 bits (2568), Expect = 0.0
Identities = 492/515 (95%), Positives = 497/515 (96%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI
Sbjct: 94 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 153
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ
Sbjct: 154 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 213
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 214 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 273
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM
Sbjct: 274 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 333
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 334 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 393
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 394 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 453
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLL KHGIYVQAINYPTVPRGE
Sbjct: 454 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGE 513
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + + VG P Q
Sbjct: 514 ELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQ 548
Score = 94.4 bits (233), Expect = 2e-19
Identities = 47/70 (67%), Positives = 48/70 (68%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLLA I GLP DVSMTACNFCRR VHFEL
Sbjct: 507 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRRPVHFEL 566
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 567 MSEWERSYFG 576
>ref|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 3 [Sus scrofa].
Length = 550
Score = 903 bits (2334), Expect = 0.0
Identities = 455/515 (88%), Positives = 460/515 (89%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVKTFKT GNHFFGYDQFFRDKI
Sbjct: 94 EDVKTFKT-------------------------------------GNHFFGYDQFFRDKI 116
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ
Sbjct: 117 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 176
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 177 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 236
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM
Sbjct: 237 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 296
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 297 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 356
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 357 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 416
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLL KHGIYVQAINYPTVPRGE
Sbjct: 417 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGE 476
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + + VG P Q
Sbjct: 477 ELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQ 511
Score = 94.4 bits (233), Expect = 2e-19
Identities = 47/70 (67%), Positives = 48/70 (68%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLLA I GLP DVSMTACNFCRR VHFEL
Sbjct: 470 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRRPVHFEL 529
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 530 MSEWERSYFG 539
>ref|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 550
Score = 903 bits (2334), Expect = 0.0
Identities = 455/515 (88%), Positives = 460/515 (89%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVKTFKT GNHFFGYDQFFRDKI
Sbjct: 94 EDVKTFKT-------------------------------------GNHFFGYDQFFRDKI 116
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ
Sbjct: 117 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 176
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 177 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 236
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM
Sbjct: 237 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 296
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 297 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 356
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 357 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 416
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLL KHGIYVQAINYPTVPRGE
Sbjct: 417 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGE 476
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + + VG P Q
Sbjct: 477 ELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQ 511
Score = 94.4 bits (233), Expect = 2e-19
Identities = 47/70 (67%), Positives = 48/70 (68%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLLA I GLP DVSMTACNFCRR VHFEL
Sbjct: 470 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRRPVHFEL 529
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 530 MSEWERSYFG 539
>ref|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonspecific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 526
Score = 620 bits (1600), Expect = e-178
Identities = 310/466 (66%), Positives = 377/466 (80%), Gaps = 18/466 (3%)
Frame = +3
Query: 132 LQDGKSKIVQKAAPEVQEDVKTF--------KTDLPISLAS--------ASLKKPFSSAQ 263
+ G S + +KA+ E+QEDV+ +T + S+ + + L K F
Sbjct: 1 MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM 60
Query: 264 DPEKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAE 440
++ + V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A +P A+
Sbjct: 61 RKQR-PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMAD 119
Query: 441 HFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEV 620
+ ++ V + VSVWCSNDYLGMSRHPRV A +TL+++G GAGGTRNISGTSKFHV++
Sbjct: 120 DYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDL 179
Query: 621 EQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVK 800
EQELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K
Sbjct: 180 EQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPK 239
Query: 801 FVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEV 980
++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEV
Sbjct: 240 YIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEV 299
Query: 981 HAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIF 1160
HAVGLYG++G GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIF
Sbjct: 300 HAVGLYGAQGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIF 359
Query: 1161 TTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIR 1340
TTSLPPMVL+GALESVR+LK EG+AL+R HQRNVK MRQ+LMD GLPVI CPSHIIP+R
Sbjct: 360 TTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVR 419
Query: 1341 VGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSP-HT 1475
V +AA N+ ICD L+ ++ IYVQAINYPTVPRGEELLR+AP+P HT
Sbjct: 420 VSDAAKNTEICDELMSRYNIYVQAINYPTVPRGEELLRIAPTPLHT 465
Score = 58.5 bits (140), Expect = 1e-08
Identities = 31/69 (44%), Positives = 37/69 (53%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM +FV LLA GL S CNFCRR +HFE+
Sbjct: 447 PTVPRGEELLRIAPTPLHTPQMMTNFVDNLLAAWKQVGLELKPHSSAECNFCRRPLHFEV 506
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 507 MSEREKSYF 515
>ref|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 217 bits (553), Expect = 1e-56
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 187
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 188 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 247
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + D
Sbjct: 308 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLASCMAD- 364
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+ K GI+V +YP VP+G+ +R+
Sbjct: 365 DMQKRGIFVIGFSYPVVPKGKARIRV 390
>ref|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 217 bits (553), Expect = 1e-56
Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 187
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 188 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 247
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + D
Sbjct: 308 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLASCMAD- 364
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+ K GI+V +YP VP+G+ +R+
Sbjct: 365 DMQKRGIFVIGFSYPVVPKGKARIRV 390
>ref|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Sus scrofa].
Length = 548
Score = 162 bits (410), Expect = 5e-40
Identities = 112/374 (29%), Positives = 193/374 (51%), Gaps = 16/374 (4%)
Frame = +3
Query: 393 VFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAG 569
+F + R +D Y + F KDV S ++LG++ ++ ++ ++ L+ +G G
Sbjct: 132 LFDVMERVSDDYNWT--FRSTGRIIKDVINMGSYNFLGLAAKYDESMRTVKDVLETYGIG 189
Query: 570 AGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDA 749
G TR GT H E+E +A+ ++A++F F N + L + GC I SD
Sbjct: 190 VGSTRQEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDE 247
Query: 750 GNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSM 902
NHAS++ G R SGA +F+HN+ + L+KLL + P T + ++ E ++SM
Sbjct: 248 LNHASLVLGARLSGATIRIFKHNNVQSLEKLLRDAIIYGQPRTRRAWKKILILVEGIYSM 307
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK-IDIISGTLGKA 1079
+G+I L ++ + +Y A ++DE H++G G G G+ E G+ + +D+ GT K+
Sbjct: 308 EGSIVYLPQIVALKKKYKAYLYIDEAHSIGSLGPTGRGVVEFFGMDPRDVDVCMGTFTKS 367
Query: 1080 FGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALKRAH 1253
FG GGY+A +DLVD +R+++ + TS+ P V + S++L+ G +G Q L+R
Sbjct: 368 FGASGGYLAGRKDLVDYLRAHSHSAAYATSMSPPVAEQIIRSMKLIMGLDGTTQGLQRVQ 427
Query: 1254 Q--RNVKHMRQLLMDRGLPVIPC-PSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYP 1424
Q +N ++ RQ L G + S ++P+ + A + LL ++ I V + +P
Sbjct: 428 QLAKNTRYFRQRLSQLGFIIYGNEASPVVPLLLYMPAKVAAFARHLLNRYKIGVVVVGFP 487
Query: 1425 TVPRGEELLRLAPS 1466
P E R S
Sbjct: 488 ATPLAEARARFCIS 501
>ref|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, partial [Sus scrofa].
Length = 463
Score = 152 bits (385), Expect = 4e-37
Identities = 105/356 (29%), Positives = 178/356 (50%), Gaps = 23/356 (6%)
Frame = +3
Query: 468 KDVSVWCSNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELH 644
KDV S +YLG +R+ Q A + L+ +G G TR G H E+E+ +A
Sbjct: 69 KDVINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFL 128
Query: 645 QKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDP 824
++A+ + F N + L + GC I SD NHAS++ G R SGA +F+HN+
Sbjct: 129 GVEAAMAYGMGFATNSMNIPAL--VSKGCLILSDELNHASLVLGARLSGATIRIFKHNNM 186
Query: 825 EHLKKLLEKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDE 977
+ L+KLL+ + P ++ E ++SM+G+I L E+ + +Y A ++DE
Sbjct: 187 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 246
Query: 978 VHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGF 1154
H++G G G G+ + G+ +DI+ GT K+FG GGYI ++L+D +R+++
Sbjct: 247 AHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSA 306
Query: 1155 IFTTSLPPMVLSGALESVRLLKGEEGQAL-KRAHQR---NVKHMRQLLMDRGL------- 1301
++ TSL P V+ + S++ + G++G L K Q+ N ++ R+ L + G
Sbjct: 307 VYATSLSPPVVEQIITSMKCIMGQDGTTLGKECIQQLAENTRYFRRRLKEMGFIIYGNED 366
Query: 1302 -PVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPS 1466
PV+P + +P ++G +LK + V + +P P E R S
Sbjct: 367 SPVVPLMLY-MPAKIGAFGRE-------MLKRNVGVVVVGFPATPIIESRARFCLS 414
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,656,078
Number of extensions: 1364892
Number of successful extensions: 5087
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5063
Number of HSP's successfully gapped: 14
Length of query: 543
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 439
Effective length of database: 8,754,644
Effective search space: 3843288716
Effective search space used: 3843288716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012802
(1630 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific,... 897 0.0
Alignment gi|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specif... 853 0.0
Alignment gi|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitoch... 639 0.0
Alignment gi|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 224 2e-58
Alignment gi|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 207 1e-53
Alignment gi|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus]. 152 1e-36
Alignment gi|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus]. 151 1e-36
Alignment gi|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus]. 125 1e-28
>ref|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a [Mus musculus].
Length = 587
Score = 897 bits (2319), Expect = 0.0
Identities = 444/514 (86%), Positives = 467/514 (90%)
Frame = +3
Query: 6 IGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQE 185
IGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQD KSKIVQ+AAPEVQE
Sbjct: 35 IGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDRKSKIVQRAAPEVQE 94
Query: 186 DVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKIM 365
DVKTFKTDL ++ S + F S Q+PE+ V HLIQNNM G+ FGYDQFFRDKIM
Sbjct: 95 DVKTFKTDLLSTMDSTTRSHSFPSFQEPEQTEGAVPHLIQNNMTGSQAFGYDQFFRDKIM 154
Query: 366 EKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQE 545
EKKQDHTYRVFKTVNRWA+AYPFA+HF EAS+ SKDVSVWCSNDYLG+SRHPRVLQA +E
Sbjct: 155 EKKQDHTYRVFKTVNRWANAYPFAQHFSEASMASKDVSVWCSNDYLGISRHPRVLQAIEE 214
Query: 546 TLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILP 725
TL+ HGAGAGGTRNISGTSKFHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAK+LP
Sbjct: 215 TLKNHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKLLP 274
Query: 726 GCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMD 905
GCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP HLKKLLEKS+P TPKIVAFETVHSMD
Sbjct: 275 GCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMD 334
Query: 906 GAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFG 1085
GAICPLEELCDVAHQYGALTFVDEVHAVGLYG+RGAGIGERDGIMHK+DIISGTLGKAFG
Sbjct: 335 GAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGKAFG 394
Query: 1086 CVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNV 1265
CVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRNV
Sbjct: 395 CVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNV 454
Query: 1266 KHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEE 1445
KHMRQLLMDRG PVIPCPSHIIPIRVGNAALNS+ICDLLL KH IYVQAINYPTVPRGEE
Sbjct: 455 KHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAINYPTVPRGEE 514
Query: 1446 LLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
LLRLAPSPH + + + VG P Q
Sbjct: 515 LLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQ 548
Score = 83.2 bits (204), Expect = 5e-16
Identities = 41/70 (58%), Positives = 44/70 (62%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMME+FV KLL GLP DVS+ ACNFC R VHFEL
Sbjct: 507 PTVPRGEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACNFCHRPVHFEL 566
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 567 MSEWERSYFG 576
>ref|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b [Mus musculus].
Length = 572
Score = 853 bits (2205), Expect = 0.0
Identities = 429/514 (83%), Positives = 452/514 (87%)
Frame = +3
Query: 6 IGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQE 185
IGRCPILATQGPTCSQIHLKATKAGG ELQD KSKIVQ+AAPEVQE
Sbjct: 35 IGRCPILATQGPTCSQIHLKATKAGG---------------ELQDRKSKIVQRAAPEVQE 79
Query: 186 DVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKIM 365
DVKTFKTDL ++ S + F S Q+PE+ V HLIQNNM G+ FGYDQFFRDKIM
Sbjct: 80 DVKTFKTDLLSTMDSTTRSHSFPSFQEPEQTEGAVPHLIQNNMTGSQAFGYDQFFRDKIM 139
Query: 366 EKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQE 545
EKKQDHTYRVFKTVNRWA+AYPFA+HF EAS+ SKDVSVWCSNDYLG+SRHPRVLQA +E
Sbjct: 140 EKKQDHTYRVFKTVNRWANAYPFAQHFSEASMASKDVSVWCSNDYLGISRHPRVLQAIEE 199
Query: 546 TLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILP 725
TL+ HGAGAGGTRNISGTSKFHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAK+LP
Sbjct: 200 TLKNHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKLLP 259
Query: 726 GCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMD 905
GCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP HLKKLLEKS+P TPKIVAFETVHSMD
Sbjct: 260 GCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMD 319
Query: 906 GAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFG 1085
GAICPLEELCDVAHQYGALTFVDEVHAVGLYG+RGAGIGERDGIMHK+DIISGTLGKAFG
Sbjct: 320 GAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGKAFG 379
Query: 1086 CVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNV 1265
CVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRNV
Sbjct: 380 CVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNV 439
Query: 1266 KHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEE 1445
KHMRQLLMDRG PVIPCPSHIIPIRVGNAALNS+ICDLLL KH IYVQAINYPTVPRGEE
Sbjct: 440 KHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAINYPTVPRGEE 499
Query: 1446 LLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
LLRLAPSPH + + + VG P Q
Sbjct: 500 LLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQ 533
Score = 83.2 bits (204), Expect = 5e-16
Identities = 41/70 (58%), Positives = 44/70 (62%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMME+FV KLL GLP DVS+ ACNFC R VHFEL
Sbjct: 492 PTVPRGEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACNFCHRPVHFEL 551
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 552 MSEWERSYFG 561
>ref|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Mus
musculus].
Length = 642
Score = 639 bits (1647), Expect = 0.0
Identities = 318/485 (65%), Positives = 386/485 (79%), Gaps = 19/485 (3%)
Frame = +3
Query: 75 AGGDSPSWAK---SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASAS 236
+G SP+ ++ S CPF+ ++L S + +KA+ E+QEDV+ + + S S
Sbjct: 95 SGHPSPATSQGSGSKCPFLAAQLSQTGSSVFRKASLELQEDVQEMHAVRKEAAQSPVPPS 154
Query: 237 LKKPFSSAQDPEKNSK------------KVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQ 377
L + +DP + K +V+HL+Q+N+P + F YD FF KI EKK
Sbjct: 155 LVNVKTDGEDPSRLLKNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDHFFEKKIDEKKN 214
Query: 378 DHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQR 557
DHTYRVFKTVNR A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A ET+++
Sbjct: 215 DHTYRVFKTVNRRAQIFPMADDYTDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMETVKQ 274
Query: 558 HGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEI 737
HGAGAGGTRNISGTSKFHVE+EQ LA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEI
Sbjct: 275 HGAGAGGTRNISGTSKFHVELEQALADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEI 334
Query: 738 YSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAIC 917
YSD+GNHASMIQGIRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+C
Sbjct: 335 YSDSGNHASMIQGIRNSRVPKYIFRHNDVNHLRELLQRSDPSVPKIVAFETVHSMDGAVC 394
Query: 918 PLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGG 1097
PLEELCDVAH++GA+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGG
Sbjct: 395 PLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGG 454
Query: 1098 YIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMR 1277
YIAST L+D VRSYAAGFIFTTSLPPM+L+GALESVR+LK EG+AL+R HQRNVK +R
Sbjct: 455 YIASTSLLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILKSSEGRALRRQHQRNVKLLR 514
Query: 1278 QLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRL 1457
Q+LMD GLPVI CPSHIIP+RV +AA N+ ICD L+ +H IYVQAINYPTVPRGEELLR+
Sbjct: 515 QMLMDAGLPVIHCPSHIIPVRVADAAKNTEICDELMTRHNIYVQAINYPTVPRGEELLRI 574
Query: 1458 APSPH 1472
AP+PH
Sbjct: 575 APTPH 579
Score = 57.0 bits (136), Expect = 4e-08
Identities = 30/69 (43%), Positives = 36/69 (52%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM FV KLL GL S CNFCRR +HFE+
Sbjct: 563 PTVPRGEELLRIAPTPHHTPQMMNFFVEKLLVTWKRVGLELKPHSSAECNFCRRPLHFEV 622
Query: 1601 MSXWERSYF 1627
MS E++YF
Sbjct: 623 MSEREKAYF 631
>ref|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform a
[Mus musculus].
Length = 416
Score = 224 bits (571), Expect = 2e-58
Identities = 129/326 (39%), Positives = 192/326 (58%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA +TL+ GAG TR I GT H +E ++A HQ++ A+
Sbjct: 67 FCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAI 126
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 127 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 184
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+++C +A QYGAL FVDE HA G G G G
Sbjct: 185 LKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLGPTGRGTD 244
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R + ++F+ SLPP V+ A
Sbjct: 245 ELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPPAVVGCAS 304
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL E A+ ++ + R + G V I P+ +G+A L+S++ D
Sbjct: 305 KALDLLM--ESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSSQMAD- 361
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+LK GI+V +YP VP+G+ +R+
Sbjct: 362 DMLKKGIFVIGFSYPVVPKGKARIRV 387
>ref|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform b
[Mus musculus].
Length = 382
Score = 207 bits (528), Expect = 1e-53
Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 1/304 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA +TL+ GAG TR I GT H +E ++A HQ++ A+
Sbjct: 67 FCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAI 126
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 127 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 184
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+++C +A QYGAL FVDE HA G G G G
Sbjct: 185 LKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLGPTGRGTD 244
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R + ++F+ SLPP V+ A
Sbjct: 245 ELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPPAVVGCAS 304
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL E A+ ++ + R + G V I P+ +G+A L+S++ D
Sbjct: 305 KALDLLM--ESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSSQMADD 362
Query: 1380 LLLK 1391
+L K
Sbjct: 363 MLKK 366
>ref|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus].
Length = 563
Score = 152 bits (383), Expect = 1e-36
Identities = 108/347 (31%), Positives = 180/347 (51%), Gaps = 18/347 (5%)
Frame = +3
Query: 489 SNDYLGMS-RHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 665
S +YLG++ ++ + ++TL+++G G TRN GT H E+E +AE ++ +
Sbjct: 167 SYNYLGLAGKYDDSMVRVKDTLEKYGVGVASTRNEMGTLDIHKELEDLMAEFLNVEAVMS 226
Query: 666 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 845
F F N + + GC I SD NH S+I G R SGAV F+HN+ E+L+KLL
Sbjct: 227 FGMGFATNAMNIPVF--VGKGCLILSDEFNHTSVILGSRLSGAVIRPFKHNNAENLEKLL 284
Query: 846 EKS----NPVTPK-----IVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 998
++ P T + ++ E V+SM+G+I L ++ + +Y A ++DE H++G
Sbjct: 285 REAIIRGQPGTGRAWKKILIVVEGVYSMEGSIVNLAQIVALKKKYKAYLYIDEAHSIGCT 344
Query: 999 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1175
G G G+ E G+ ID+ GT K+F GGYI +++VD +R + + TS+
Sbjct: 345 GPTGRGVRELFGLDPEDIDVYMGTFTKSFSGSGGYIGGKKEIVDYLRMQSHSTTYATSMS 404
Query: 1176 PMVLSGALESVRLLKGEEGQ--ALKRAHQ--RNVKHMRQLLMDRGLPVIPCP-SHIIPIR 1340
P+V + + S+++ G EG ++R Q N+K+ R+ L + G + S +IP+
Sbjct: 405 PVVAAQLIRSLKITMGYEGNIGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVL 464
Query: 1341 VGNAALNSRICDLLLLKHGIYVQAINYP--TVPRGEELLRLAPSPHT 1475
+ A S LLK I V + +P ++P G ++ S HT
Sbjct: 465 LYMPAKVSAF-SRFLLKKKISVVVVGFPATSLPEGRARFSMS-SAHT 509
>ref|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus].
Length = 560
Score = 151 bits (382), Expect = 1e-36
Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 23/349 (6%)
Frame = +3
Query: 489 SNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 665
S +YLG +R+ Q A E L+ +GAG TR G H E+E+ +A ++A+
Sbjct: 173 SYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAAMT 232
Query: 666 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 845
+ F N + L + GC I SD NHAS++ G R SGA +F+HN+ + L+KLL
Sbjct: 233 YGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 290
Query: 846 EKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 998
+ + P ++ E ++SM+G+I L E+ + +Y A ++DE H++G
Sbjct: 291 KDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL 350
Query: 999 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1175
G G G+ + G+ +D++ GT K+FG GGYI ++L+D +R+++ ++ TS+
Sbjct: 351 GPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSMS 410
Query: 1176 PMVLSGALESVRLLKGEEGQAL-KRAHQR---NVKHMRQLLMDRGL--------PVIPCP 1319
P V+ + S++ + G++G +L K Q+ N ++ R+ L + G PV+P
Sbjct: 411 PPVMEQIITSMKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLM 470
Query: 1320 SHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPS 1466
+ +P ++G +LK I V + +P P E R S
Sbjct: 471 LY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLS 511
>ref|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus].
Length = 473
Score = 125 bits (313), Expect = 1e-28
Identities = 78/265 (29%), Positives = 142/265 (53%), Gaps = 11/265 (4%)
Frame = +3
Query: 459 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 638
V K+ + S ++LG+ +PRV +L+++G G G R GT H+++E+ LA+
Sbjct: 95 VNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAK 154
Query: 639 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 818
+ + A+++S F S + +K G I+ D+ ++ +G++ S + +F+HN
Sbjct: 155 FMKTEEAIIYSYGFSTIASAIPAYSK--RGDIIFVDSAACFAIQKGLQASRSDIKLFKHN 212
Query: 819 DPEHLKKLL------EKSNP----VTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTF 968
D L++LL ++ NP VT + + E ++ G ICPL EL + ++Y A F
Sbjct: 213 DVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
Query: 969 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1145
++E + G+ G G G+ E GI + ID+IS + A VGG+ +VD R
Sbjct: 273 LEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSG 332
Query: 1146 AGFIFTTSLPPMVLSGALESVRLLK 1220
G+ F+ SLPP++ + A+E++ +++
Sbjct: 333 QGYCFSASLPPLLAAAAIEALNIME 357
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,667,679
Number of extensions: 1815974
Number of successful extensions: 6399
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6351
Number of HSP's successfully gapped: 11
Length of query: 543
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 437
Effective length of database: 12,433,743
Effective search space: 5433545691
Effective search space used: 5433545691
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012802
(1630 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific,... 937 0.0
Alignment gi|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specif... 869 0.0
Alignment gi|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specif... 869 0.0
Alignment gi|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitoch... 634 0.0
Alignment gi|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitoch... 634 0.0
Alignment gi|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 218 1e-56
Alignment gi|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 218 1e-56
Alignment gi|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens]. 162 6e-40
Alignment gi|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens]. 152 9e-37
Alignment gi|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo s... 125 1e-28
>ref|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a precursor [Homo sapiens].
Length = 587
Score = 937 bits (2421), Expect = 0.0
Identities = 463/515 (89%), Positives = 478/515 (92%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGP CSQIHLKATKAGGDSPSWAK HCPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVK FKTDLP SL S SL+KPFS Q+ E+ S KVTHLIQNNMPGN+ F YDQFFRDKI
Sbjct: 94 EDVKAFKTDLPSSLVSVSLRKPFSGPQEQEQISGKVTHLIQNNMPGNYVFSYDQFFRDKI 153
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFA+HF EASV SKDVSVWCSNDYLGMSRHP+VLQATQ
Sbjct: 154 MEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGMSRHPQVLQATQ 213
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 214 ETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 273
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP+HLKKLLEKSNP PKIVAFETVHSM
Sbjct: 274 PGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVHSM 333
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDV+HQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 334 DGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 393
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 394 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 453
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNS++CDLLL KHGIYVQAINYPTVPRGE
Sbjct: 454 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPRGE 513
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + VG P Q
Sbjct: 514 ELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQ 548
Score = 87.0 bits (214), Expect = 4e-17
Identities = 43/70 (61%), Positives = 45/70 (64%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLL GLP DVS+ ACNFCRR VHFEL
Sbjct: 507 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQDVSVAACNFCRRPVHFEL 566
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 567 MSEWERSYFG 576
>ref|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
c precursor [Homo sapiens].
Length = 574
Score = 869 bits (2245), Expect = 0.0
Identities = 437/515 (84%), Positives = 449/515 (87%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGP CSQIHLKATKAGGDSPSWAK HCPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 58 GIGRCPILATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQ 117
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVK FKT GN+ F YDQFFRDKI
Sbjct: 118 EDVKAFKT-------------------------------------GNYVFSYDQFFRDKI 140
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFA+HF EASV SKDVSVWCSNDYLGMSRHP+VLQATQ
Sbjct: 141 MEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGMSRHPQVLQATQ 200
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 201 ETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 260
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP+HLKKLLEKSNP PKIVAFETVHSM
Sbjct: 261 PGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVHSM 320
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDV+HQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 321 DGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 380
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 381 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 440
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNS++CDLLL KHGIYVQAINYPTVPRGE
Sbjct: 441 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPRGE 500
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + VG P Q
Sbjct: 501 ELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQ 535
Score = 87.0 bits (214), Expect = 4e-17
Identities = 43/70 (61%), Positives = 45/70 (64%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLL GLP DVS+ ACNFCRR VHFEL
Sbjct: 494 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQDVSVAACNFCRRPVHFEL 553
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 554 MSEWERSYFG 563
>ref|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b precursor [Homo sapiens].
Length = 550
Score = 869 bits (2245), Expect = 0.0
Identities = 437/515 (84%), Positives = 449/515 (87%)
Frame = +3
Query: 3 GIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQ 182
GIGRCPILATQGP CSQIHLKATKAGGDSPSWAK HCPFMLSELQDGKSKIVQKAAPEVQ
Sbjct: 34 GIGRCPILATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQ 93
Query: 183 EDVKTFKTDLPISLASASLKKPFSSAQDPEKNSKKVTHLIQNNMPGNHFFGYDQFFRDKI 362
EDVK FKT GN+ F YDQFFRDKI
Sbjct: 94 EDVKAFKT-------------------------------------GNYVFSYDQFFRDKI 116
Query: 363 MEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQ 542
MEKKQDHTYRVFKTVNRWADAYPFA+HF EASV SKDVSVWCSNDYLGMSRHP+VLQATQ
Sbjct: 117 MEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLGMSRHPQVLQATQ 176
Query: 543 ETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 722
ETLQRHGAGAGGTRNISGTSKFHVE+EQELAELHQKDSALLFSSCFVANDSTLFTLAKIL
Sbjct: 177 ETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKIL 236
Query: 723 PGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSM 902
PGCEIYSDAGNHASMIQGIRNSGA KFVFRHNDP+HLKKLLEKSNP PKIVAFETVHSM
Sbjct: 237 PGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKIPKIVAFETVHSM 296
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 1082
DGAICPLEELCDV+HQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF
Sbjct: 297 DGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAF 356
Query: 1083 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRN 1262
GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQAL+RAHQRN
Sbjct: 357 GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRN 416
Query: 1263 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGE 1442
VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNS++CDLLL KHGIYVQAINYPTVPRGE
Sbjct: 417 VKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYVQAINYPTVPRGE 476
Query: 1443 ELLRLAPSPHTAFR*WKTLXRSCWXPXLXVGCPSQ 1547
ELLRLAPSPH + + + VG P Q
Sbjct: 477 ELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQ 511
Score = 87.0 bits (214), Expect = 4e-17
Identities = 43/70 (61%), Positives = 45/70 (64%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P HS QMMEDFV KLL GLP DVS+ ACNFCRR VHFEL
Sbjct: 470 PTVPRGEELLRLAPSPHHSPQMMEDFVEKLLLAWTAVGLPLQDVSVAACNFCRRPVHFEL 529
Query: 1601 MSXWERSYFG 1630
MS WERSYFG
Sbjct: 530 MSEWERSYFG 539
>ref|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 634 bits (1635), Expect = 0.0
Identities = 309/472 (65%), Positives = 381/472 (80%), Gaps = 16/472 (3%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDP-- 269
S CPF+ +++ S + KA+ E+QEDV+ + ++ + A S+ + DP
Sbjct: 106 SKCPFLAAQMNQRGSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSG 165
Query: 270 ----------EKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 416
++ ++V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 166 LLKNFQDIMQKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 225
Query: 417 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 596
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 226 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 285
Query: 597 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 776
TSKFHV++E+ELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQG
Sbjct: 286 TSKFHVDLERELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQG 345
Query: 777 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 956
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 346 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 405
Query: 957 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1136
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 406 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 465
Query: 1137 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPC 1316
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+ L+R HQRNVK MRQ+LMD GLPV+ C
Sbjct: 466 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHC 525
Query: 1317 PSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
PSHIIP+RV +AA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 526 PSHIIPVRVADAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 577
Score = 55.1 bits (131), Expect = 2e-07
Identities = 29/69 (42%), Positives = 35/69 (50%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LL GL S CNFCRR +HFE+
Sbjct: 561 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLVTWKQVGLELKPHSSAECNFCRRPLHFEV 620
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 621 MSEREKSYF 629
>ref|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 634 bits (1635), Expect = 0.0
Identities = 309/472 (65%), Positives = 381/472 (80%), Gaps = 16/472 (3%)
Frame = +3
Query: 105 SHCPFMLSELQDGKSKIVQKAAPEVQEDVKTF---KTDLPISLASASLKKPFSSAQDP-- 269
S CPF+ +++ S + KA+ E+QEDV+ + ++ + A S+ + DP
Sbjct: 106 SKCPFLAAQMNQRGSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSG 165
Query: 270 ----------EKNSKKVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRW 416
++ ++V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 166 LLKNFQDIMQKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRR 225
Query: 417 ADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 596
A +P A+ + ++ + K VSVWCSNDYLGMSRHPRV A +TL++HGAGAGGTRNISG
Sbjct: 226 AHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISG 285
Query: 597 TSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 776
TSKFHV++E+ELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQG
Sbjct: 286 TSKFHVDLERELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQG 345
Query: 777 IRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYG 956
IRNS K++FRHND HL++LL++S+P PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 346 IRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 405
Query: 957 ALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVR 1136
A+TFVDEVHAVGLYG+RG GIG+RDG+M K+DIISGTLGKAFGCVGGYIAST L+D VR
Sbjct: 406 AITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVR 465
Query: 1137 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPC 1316
SYAAGFIFTTSLPPM+L+GALESVR+LK EG+ L+R HQRNVK MRQ+LMD GLPV+ C
Sbjct: 466 SYAAGFIFTTSLPPMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHC 525
Query: 1317 PSHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPSPH 1472
PSHIIP+RV +AA N+ +CD L+ +H IYVQAINYPTVPRGEELLR+AP+PH
Sbjct: 526 PSHIIPVRVADAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPH 577
Score = 55.1 bits (131), Expect = 2e-07
Identities = 29/69 (42%), Positives = 35/69 (50%)
Frame = +2
Query: 1421 PNCPQG*RAAAPGTLPPHSLQMMEDFVXKLLAXXIXSGLPXPDVSMTACNFCRRTVHFEL 1600
P P+G P H+ QMM F+ LL GL S CNFCRR +HFE+
Sbjct: 561 PTVPRGEELLRIAPTPHHTPQMMNYFLENLLVTWKQVGLELKPHSSAECNFCRRPLHFEV 620
Query: 1601 MSXWERSYF 1627
MS E+SYF
Sbjct: 621 MSEREKSYF 629
>ref|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 445
Score = 218 bits (555), Expect = 1e-56
Identities = 125/326 (38%), Positives = 188/326 (57%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +E ++A HQ++ A+
Sbjct: 96 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAI 155
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SC+ AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 156 LYPSCYDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 213
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+E+C +A +YGAL F+DE HA G G G G
Sbjct: 214 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTD 273
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 274 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 333
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL G + ++ + R + G + I P+ +G+A L SR+ D
Sbjct: 334 KALDLLMG--SNTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMAD- 390
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+LK GI+V +YP VP+G+ +R+
Sbjct: 391 DMLKRGIFVIGFSYPVVPKGKARIRV 416
>ref|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 419
Score = 218 bits (555), Expect = 1e-56
Identities = 125/326 (38%), Positives = 188/326 (57%), Gaps = 1/326 (0%)
Frame = +3
Query: 483 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 662
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +E ++A HQ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAI 129
Query: 663 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 842
L+ SC+ AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 130 LYPSCYDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 843 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 1022
L+++ ++VA + SMDG I PL+E+C +A +YGAL F+DE HA G G G G
Sbjct: 188 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTD 247
Query: 1023 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 1199
E G+M ++ II+ TLGKA G GGY LV ++R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1200 ESVRLLKGEEGQALKRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 1379
+++ LL G + ++ + R + G + I P+ +G+A L SR+ D
Sbjct: 308 KALDLLMG--SNTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMAD- 364
Query: 1380 LLLKHGIYVQAINYPTVPRGEELLRL 1457
+LK GI+V +YP VP+G+ +R+
Sbjct: 365 DMLKRGIFVIGFSYPVVPKGKARIRV 390
>ref|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens].
Length = 552
Score = 162 bits (411), Expect = 6e-40
Identities = 111/377 (29%), Positives = 197/377 (52%), Gaps = 19/377 (5%)
Frame = +3
Query: 393 VFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMS-RHPRVLQATQETLQRHGAG 569
+F + R +D Y + F + KDV S ++LG++ ++ ++ ++ L+ +G G
Sbjct: 137 LFDLMERVSDDYNWTFRFTGRVI--KDVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTG 194
Query: 570 AGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDA 749
TR+ GT H E+E +A+ ++A++F F N + L + GC I SD
Sbjct: 195 VASTRHEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPAL--VGKGCLILSDE 252
Query: 750 GNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKS----NPVTPK-----IVAFETVHSM 902
NH S++ G R SGA +F+HN+ + L+KLL + P T + ++ E V+SM
Sbjct: 253 LNHTSLVLGARLSGATIRIFKHNNTQSLEKLLRDAVIYGQPRTRRAWKKILILVEGVYSM 312
Query: 903 DGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKA 1079
+G+I L ++ + +Y A ++DE H++G G G G+ E G+ H++D++ GT K+
Sbjct: 313 EGSIVHLPQIIALKKKYKAYLYIDEAHSIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKS 372
Query: 1080 FGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEG--QALKRAH 1253
FG GGYIA +DLVD +R ++ ++ +S+ P + + S++L+ G +G Q L+R
Sbjct: 373 FGASGGYIAGRKDLVDYLRVHSHSAVYASSMSPPIAEQIIRSLKLIMGLDGTTQGLQRVQ 432
Query: 1254 Q--RNVKHMRQLLMDRGLPVIPCP-SHIIPIRV---GNAALNSRICDLLLLKHGIYVQAI 1415
Q +N ++ RQ L + G + + ++P+ + G A +R +L+ I V +
Sbjct: 433 QLAKNTRYFRQRLQEMGFIIYGNENASVVPLLLYMPGKVAAFAR----HMLEKKIGVVVV 488
Query: 1416 NYPTVPRGEELLRLAPS 1466
+P P E R S
Sbjct: 489 GFPATPLAEARARFCVS 505
>ref|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens].
Length = 562
Score = 152 bits (384), Expect = 9e-37
Identities = 104/349 (29%), Positives = 177/349 (50%), Gaps = 23/349 (6%)
Frame = +3
Query: 489 SNDYLGMSRHPRVLQ-ATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 665
S +YLG +R+ Q A + L+ +GAG TR G H E+E+ +A ++A+
Sbjct: 175 SYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMA 234
Query: 666 FSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLL 845
+ F N + L + GC I SD NHAS++ G R SGA +F+HN+ + L+KLL
Sbjct: 235 YGMGFATNSMNIPAL--VGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 292
Query: 846 EKS---------NPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY 998
+ + P ++ E ++SM+G+I L E+ + +Y A ++DE H++G
Sbjct: 293 KDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL 352
Query: 999 GSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLP 1175
G G G+ E G+ +D++ GT K+FG GGYI ++L+D +R+++ ++ TSL
Sbjct: 353 GPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLS 412
Query: 1176 PMVLSGALESVRLLKGEEGQAL-KRAHQR---NVKHMRQLLMDRGL--------PVIPCP 1319
P V+ + S++ + G++G +L K Q+ N ++ R+ L + G PV+P
Sbjct: 413 PPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLM 472
Query: 1320 SHIIPIRVGNAALNSRICDLLLLKHGIYVQAINYPTVPRGEELLRLAPS 1466
+ +P ++G +LK I V + +P P E R S
Sbjct: 473 LY-MPAKIGAFGRE-------MLKRNIGVVVVGFPATPIIESRARFCLS 513
>ref|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo sapiens].
Length = 473
Score = 125 bits (314), Expect = 1e-28
Identities = 77/269 (28%), Positives = 142/269 (52%), Gaps = 11/269 (4%)
Frame = +3
Query: 459 VPSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAE 638
V K+ + S ++LG+ +PRV A +L+++G G G R GT H+++E LA+
Sbjct: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAK 154
Query: 639 LHQKDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHN 818
+ + A+++S F S + +K G ++ D ++ +G++ S + +F+HN
Sbjct: 155 FMKTEEAIIYSYGFATIASAIPAYSK--RGDIVFVDRAACFAIQKGLQASRSDIKLFKHN 212
Query: 819 DPEHLKKLL------EKSNP----VTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTF 968
D L++LL ++ NP VT + + E ++ G ICPL EL + ++Y A F
Sbjct: 213 DMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIF 272
Query: 969 VDEVHAVGLYGSRGAGIGERDGI-MHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYA 1145
++E + G+ G G G+ E GI + ID+IS + A +GG+ ++D R
Sbjct: 273 LEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSG 332
Query: 1146 AGFIFTTSLPPMVLSGALESVRLLKGEEG 1232
G+ F+ SLPP++ + A+E++ +++ G
Sbjct: 333 QGYCFSASLPPLLAAAAIEALNIMEENPG 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,630,703
Number of extensions: 2153628
Number of successful extensions: 7542
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7496
Number of HSP's successfully gapped: 17
Length of query: 543
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 436
Effective length of database: 14,770,016
Effective search space: 6439726976
Effective search space used: 6439726976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012802
(1630 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 533 e-148
Sscrofa_Chr13 82 1e-12
>Sscrofa_ChrX
|| Length = 144288218
Score = 533 bits (269), Expect = e-148
Identities = 272/273 (99%)
Strand = Plus / Minus
Query: 1071 ggcaaggcctttggctgtgtgggtggctacattgccagcactcgtgacttggtggacatg 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814595 ggcaaggcctttggctgtgtgggtggctacattgccagcactcgtgacttggtggacatg 53814536
Query: 1131 gtgcgctcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctct 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814535 gtgcgctcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctct 53814476
Query: 1191 ggggctctggaatccgtgcggctgctcaagggagaggaaggccaagccctgaagcgggcc 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 53814475 ggggctctggaatccgtgcggctgctcaagggagaggaaggccaagccctgaggcgggcc 53814416
Query: 1251 caccagcgcaatgtcaagcacatgcgccagctactgatggacaggggccttcctgtcatc 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53814415 caccagcgcaatgtcaagcacatgcgccagctactgatggacaggggccttcctgtcatc 53814356
Query: 1311 ccatgccctagccacatcatccccattcgggtg 1343
|||||||||||||||||||||||||||||||||
Sbjct: 53814355 ccatgccctagccacatcatccccattcgggtg 53814323
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Minus
Query: 318 ggaaaccatttctttggttatgaccagttttttagggacaagatcatggagaagaaacag 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821929 ggaaaccatttctttggttatgaccagttttttagggacaagatcatggagaagaaacag 53821870
Query: 378 gaccacacctaccgtgtgttcaagactgtgaaccgctgggctgatgcttatccctttgcc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821869 gaccacacctaccgtgtgttcaagactgtgaaccgctgggctgatgcttatccctttgcc 53821810
Query: 438 gaacacttctttgaggcatctgtgccctcaaaggatgtgtctgtctggtgcagtaatgac 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821809 gaacacttctttgaggcatctgtgccctcaaaggatgtgtctgtctggtgcagtaatgac 53821750
Query: 498 tacctgggcatgagccggcatcctcgagtcttgcaagccacaca 541
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821749 tacctgggcatgagccggcatcctcgagtcttgcaagccacaca 53821706
Score = 369 bits (186), Expect = 3e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 542 agagaccctgcagcgtcatggagctggagctggtggcacccgcaacatctcgggtaccag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821153 agagaccctgcagcgtcatggagctggagctggtggcacccgcaacatctcgggtaccag 53821094
Query: 602 taagtttcatgtcgaggtggagcaggagctggctgaattgcaccagaaggattcagccct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821093 taagtttcatgtcgaggtggagcaggagctggctgaattgcaccagaaggattcagccct 53821034
Query: 662 actcttctcttcctgttttgtggccaatgactccactctcttcaccttggccaagatcct 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53821033 actcttctcttcctgttttgtggccaatgactccactctcttcaccttggccaagatcct 53820974
Query: 722 gccagg 727
||||||
Sbjct: 53820973 gccagg 53820968
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 724 cagggtgtgagatttattcagatgcaggcaaccatgcttcaatgatccaaggtatccgca 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53818234 cagggtgtgagatttattcagatgcaggcaaccatgcttcaatgatccaaggtatccgca 53818175
Query: 784 atagtggagcagtcaaatttgtcttcaggcacaatgaccctgagcatctgaagaagcttc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53818174 atagtggagcagtcaaatttgtcttcaggcacaatgaccctgagcatctgaagaagcttc 53818115
Query: 844 tagagaagtccaaccccgtgacacccaaaattgtggcctttgagactgttcactccatgg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53818114 tagagaagtccaaccccgtgacacccaaaattgtggcctttgagactgttcactccatgg 53818055
Query: 904 atggt 908
|||||
Sbjct: 53818054 atggt 53818050
Score = 331 bits (167), Expect = 7e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 906 ggtgccatctgtccccttgaagagttgtgtgatgtggctcaccagtatggggctctgact 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53815330 ggtgccatctgtccccttgaagagttgtgtgatgtggctcaccagtatggggctctgact 53815271
Query: 966 tttgtggatgaggttcatgctgtaggactgtatgggtcccgaggcgctgggattggggag 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53815270 tttgtggatgaggttcatgctgtaggactgtatgggtcccgaggcgctgggattggggag 53815211
Query: 1026 cgtgatggaattatgcataagattgacatcatctctggaactcttgg 1072
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53815210 cgtgatggaattatgcataagattgacatcatctctggaactcttgg 53815164
Score = 276 bits (139), Expect = 4e-71
Identities = 158/163 (96%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 1340 ggtgggcaatgcagcactgaacagcaggatatgtgacctccttctcctcaagcatggaat 1399
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 53812703 ggtgggcaatgcagcactgaacagcaggatatgtgacctccttctctccaagcatggaat 53812644
Query: 1400 ctatgtgcaggccatcaactacccaactgtccccaggggtgaagagctgctgcgcctggc 1459
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 53812643 ctatgtgcaggccatcaactacccaactgtccccaggggtgaggagctgctgcgcctggc 53812584
Query: 1460 accctcccccca-cacagccttcagatgatggaagactttgtg 1501
|||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 53812583 accctccccccaccacagccctcagatgatggaagactttgtg 53812541
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 84 gactctccatcttgggctaagagccactgtcccttcatgctgtcggaactccaggatggg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825600 gactctccatcttgggctaagagccactgtcccttcatgctgtcggaactccaggatggg 53825541
Query: 144 aagagtaagattgtgcagaaggcagccccagaagttcaagaggatgtgaagactttcaag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53825540 aagagtaagattgtgcagaaggcagccccagaagttcaagaggatgtgaagactttcaag 53825481
Query: 204 acag 207
||||
Sbjct: 53825480 acag 53825477
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 205 cagacctccccatctccctggcctcagccagcttgaagaagccattctccagtgcccagg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53824650 cagacctccccatctccctggcctcagccagcttgaagaagccattctccagtgcccagg 53824591
Query: 265 atccagagaaaaattcaaagaaagtcacacacctgattcagaacaatatgcctgg 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53824590 atccagagaaaaattcaaagaaagtcacacacctgattcagaacaatatgcctgg 53824536
Score = 170 bits (86), Expect = 2e-39
Identities = 116/128 (90%)
Strand = Plus / Minus
Query: 1503 agaagctgctggcancctgnattgnnagtgggctgcccntcccagatgtatctatgactg 1562
|||||||||||||| |||| |||| ||||||||| ||| ||||||||||||||||
Sbjct: 53807953 agaagctgctggcagcctggattgaggtggggctgcccctccaggatgtatctatgactg 53807894
Query: 1563 cctgcaatttctgtcgccgaactgtgcacttcgagctgatgagtgantgggaacgttcct 1622
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 53807893 cctgcaatttctgtcgccgacctgtgcacttcgagctgatgagtgagtgggaacgttcct 53807834
Query: 1623 actttggg 1630
||||||||
Sbjct: 53807833 actttggg 53807826
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 1 ttggtattggacgctgtcccatcctggccacccaaggaccaacctgttctcaaatccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53826339 ttggtattggacgctgtcccatcctggccacccaaggaccaacctgttctcaaatccatc 53826280
Query: 61 ttaaggcaaccaaggctggagggg 84
||||||||||||||||||||||||
Sbjct: 53826279 ttaaggcaaccaaggctggagggg 53826256
>Sscrofa_Chr13
|| Length = 218635234
Score = 81.8 bits (41), Expect = 1e-12
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 924 gaagagttgtgtgatgtggctcaccagtatggggctctgacttttgtggatgaggttcat 983
|||||| ||||||||||||||||| ||| ||| || | || || ||||||||||| |||
Sbjct: 37662435 gaagagctgtgtgatgtggctcacgagtttggagccatcaccttcgtggatgaggtccat 37662376
Query: 984 gctgtaggactgtatgggtcccgaggcgctgggattggggagcgtgatggaattatgcat 1043
|| || || ||||||||| | | ||||| |||||||| || || |||||| ||||||
Sbjct: 37662375 gcagtggggctgtatggggctcaaggcggagggattggcgatcgggatggagttatgcca 37662316
Query: 1044 aagattgacatcatctctggaactcttgg 1072
|| || |||||||| ||||||||||||||
Sbjct: 37662315 aaaatggacatcatttctggaactcttgg 37662287
Score = 63.9 bits (32), Expect = 3e-07
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 1137 tcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctctggggct 1196
||||| || ||||| |||||||||||||| || ||||| ||||||||||| |||| ||
Sbjct: 37660581 tcctacgcggctggcttcatcttcaccacctccctgccacccatggtgctggctggagcc 37660522
Query: 1197 ctggaatccgtgcggctgctcaag 1220
|||||||| |||||| | ||||||
Sbjct: 37660521 ctggaatctgtgcggatcctcaag 37660498
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,236,762
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 12
Length of query: 1630
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1608
Effective length of database: 2,808,408,574
Effective search space: 4515920986992
Effective search space used: 4515920986992
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)