Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012805
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029507.1| IST1 homolog [Bos taurus]. 417 e-117
>ref|NP_001029507.1| IST1 homolog [Bos taurus].
Length = 364
Score = 417 bits (1073), Expect = e-117
Identities = 224/304 (73%), Positives = 231/304 (75%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSG KAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 811
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGGGGFTAPVGGPDGTVPMPMPMPMPSPN 240
Query: 812 XXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADKMSLPKSLVLN 991
FSYPLPKGPSDF+G+ VGTYQAF PQIPATPPSYESVDDINADK ++ + ++
Sbjct: 241 TPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADK-NVSSTQIVG 299
Query: 992 PSQK 1003
P K
Sbjct: 300 PGPK 303
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,121,445
Number of extensions: 912552
Number of successful extensions: 2778
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2777
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012805
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012805
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536798.2| PREDICTED: similar to Protein KIAA0174 isoform ... 414 e-116
Alignment gi|XP_862795.1| PREDICTED: similar to Protein KIAA0174 isoform ... 398 e-111
Alignment gi|XP_862770.1| PREDICTED: similar to Protein KIAA0174 isoform ... 398 e-111
Alignment gi|XP_862819.1| PREDICTED: similar to Protein KIAA0174 isoform ... 355 3e-98
Alignment gi|XP_862748.1| PREDICTED: similar to Protein KIAA0174 isoform ... 349 3e-96
>ref|XP_536798.2| PREDICTED: similar to Protein KIAA0174 isoform 1 [Canis familiaris].
Length = 366
Score = 414 bits (1063), Expect = e-116
Identities = 224/306 (73%), Positives = 232/306 (75%), Gaps = 2/306 (0%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 805
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 806 XXXXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADKMSLPKSLV 985
FSYPLPKGPSDF+G+ +GTYQAF PQIPATPPSYESVDDINAD M++ + +
Sbjct: 241 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINAD-MNVSSAQI 299
Query: 986 LNPSQK 1003
+ P K
Sbjct: 300 VGPGPK 305
>ref|XP_862795.1| PREDICTED: similar to Protein KIAA0174 isoform 4 [Canis
familiaris].
Length = 351
Score = 398 bits (1023), Expect = e-111
Identities = 215/285 (75%), Positives = 218/285 (76%), Gaps = 2/285 (0%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 805
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 806 XXXXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESV 940
FSYPLPKGPSDF+G+ +GTYQAF PQIPATPPSYESV
Sbjct: 241 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESV 285
>ref|XP_862770.1| PREDICTED: similar to Protein KIAA0174 isoform 3 [Canis
familiaris].
Length = 341
Score = 398 bits (1023), Expect = e-111
Identities = 215/285 (75%), Positives = 218/285 (76%), Gaps = 2/285 (0%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 805
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 806 XXXXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESV 940
FSYPLPKGPSDF+G+ +GTYQAF PQIPATPPSYESV
Sbjct: 241 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESV 285
>ref|XP_862819.1| PREDICTED: similar to Protein KIAA0174 isoform 5 [Canis
familiaris].
Length = 335
Score = 355 bits (912), Expect = 3e-98
Identities = 200/283 (70%), Positives = 203/283 (71%), Gaps = 4/283 (1%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 805
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 806 XXXXFSYPLPKGPSD--FHGIAVGTYQAFSKY*SPQIPATPPS 928
FSYPLPKGP D + V + Q P+ A PPS
Sbjct: 241 PSTPFSYPLPKGPVDDINADMNVSSAQIVGPGPKPEASAKPPS 283
>ref|XP_862748.1| PREDICTED: similar to Protein KIAA0174 isoform 2 [Canis familiaris].
Length = 361
Score = 349 bits (895), Expect = 3e-96
Identities = 200/306 (65%), Positives = 213/306 (69%), Gaps = 2/306 (0%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
+ K SK + ++ + LMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 SRMFVLK-SKNRSMVTDDWKL----EALMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 175
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 805
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 176 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 235
Query: 806 XXXXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADKMSLPKSLV 985
FSYPLPKGPSDF+G+ +GTYQAF PQIPATPPSYESVDDINAD M++ + +
Sbjct: 236 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINAD-MNVSSAQI 294
Query: 986 LNPSQK 1003
+ P K
Sbjct: 295 VGPGPK 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,968,510
Number of extensions: 948788
Number of successful extensions: 2889
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2879
Number of HSP's successfully gapped: 10
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012805
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126959.2| PREDICTED: IST1 homolog [Sus scrofa]. 419 e-120
Alignment gi|XP_003355811.1| PREDICTED: IST1 homolog [Sus scrofa]. 404 e-113
Alignment gi|XP_003361803.1| PREDICTED: IST1 homolog, partial [Sus scrofa]. 247 2e-68
>ref|XP_003126959.2| PREDICTED: IST1 homolog [Sus scrofa].
Length = 363
Score = 419 bits (1076), Expect(2) = e-120
Identities = 223/290 (76%), Positives = 225/290 (77%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 811
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPMPMPMPMPSPS 240
Query: 812 XXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADK 961
FSYPLPKGPSDF+G+ VGTYQAF PQIPATPPSYESVDDINADK
Sbjct: 241 TPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADK 290
Score = 30.4 bits (67), Expect(2) = e-120
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 961 DVSSQIVGPEPXPEASA 1011
+VSSQIVGP P PEASA
Sbjct: 291 NVSSQIVGPGPKPEASA 307
>ref|XP_003355811.1| PREDICTED: IST1 homolog [Sus scrofa].
Length = 285
Score = 404 bits (1039), Expect = e-113
Identities = 216/283 (76%), Positives = 218/283 (77%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 811
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPMPMPMPMPSPS 240
Query: 812 XXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESV 940
FSYPLPKGPSDF+G+ VGTYQAF PQIPATPPSYESV
Sbjct: 241 TPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESV 283
>ref|XP_003361803.1| PREDICTED: IST1 homolog, partial [Sus scrofa].
Length = 244
Score = 247 bits (631), Expect(2) = 2e-68
Identities = 127/171 (74%), Positives = 129/171 (75%)
Frame = +2
Query: 449 VADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 628
VADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP
Sbjct: 1 VADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 60
Query: 629 DSVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 808
DSVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 61 DSVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPMPMPMPMPSP 120
Query: 809 XXXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADK 961
FSYPLPKGPSDF+G+ VGTYQAF PQIPATPPSYESVDDINADK
Sbjct: 121 STPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADK 171
Score = 30.4 bits (67), Expect(2) = 2e-68
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 961 DVSSQIVGPEPXPEASA 1011
+VSSQIVGP P PEASA
Sbjct: 172 NVSSQIVGPGPKPEASA 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,286,230
Number of extensions: 584819
Number of successful extensions: 1728
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1722
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012805
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082294.1| IST1 homolog [Mus musculus]. 412 e-115
>ref|NP_082294.1| IST1 homolog [Mus musculus].
Length = 362
Score = 412 bits (1058), Expect = e-115
Identities = 220/290 (75%), Positives = 222/290 (76%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 811
SVVMAEAP GVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPVGVETDLIDVGFTDDVKKGGPGRGGGGGFTAPVGGPDGIVPMPMPMPMPSPN 240
Query: 812 XXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADK 961
F+YPLPKGPSDF G+ VGTYQAF PQIPATPPSYESVDDIN DK
Sbjct: 241 APFAYPLPKGPSDFSGLPVGTYQAFPNIHPPQIPATPPSYESVDDINGDK 290
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,423,964
Number of extensions: 779990
Number of successful extensions: 2261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2259
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012805
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055576.2| IST1 homolog [Homo sapiens]. 407 e-114
>ref|NP_055576.2| IST1 homolog [Homo sapiens].
Length = 360
Score = 407 bits (1046), Expect = e-114
Identities = 224/309 (72%), Positives = 231/309 (74%), Gaps = 2/309 (0%)
Frame = +2
Query: 92 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 271
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 272 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 451
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 452 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 631
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 632 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 805
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS 240
Query: 806 XXXXFSYPLPKGPSDFHGIAVGTYQAFSKY*SPQIPATPPSYESVDDINADKMSLPKSLV 985
FSYPLPKGPSDF+G+ +GTYQAF PQIPATPPSYES+ + L + LV
Sbjct: 241 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESMTLMLIRISLLHRLLV 300
Query: 986 LNPSQKLLQ 1012
L+PSQK LQ
Sbjct: 301 LDPSQKPLQ 309
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,166,068
Number of extensions: 937731
Number of successful extensions: 2829
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2824
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012805
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 783 0.0
Sscrofa_Chr06 400 e-109
>Sscrofa_Chr13
|| Length = 218635234
Score = 783 bits (395), Expect = 0.0
Identities = 620/694 (89%), Gaps = 7/694 (1%)
Strand = Plus / Plus
Query: 100 ctctggatttaaagctgagcgtttacgagtcaatttgagattagtcataaaccgtcttaa 159
|||||||||||||||||||| ||| | | |||||||||||||||||||||||| ||||||
Sbjct: 162912460 ctctggatttaaagctgagcattttctattcaatttgagattagtcataaaccatcttaa 162912519
Query: 160 actattggagnnnnnnnnnnc-ggaactggcccagaaagcaagaaaagagattgctgact 218
|||| ||||| ||||||||| |||| | |||| ||||| ||||||||||
Sbjct: 162912520 actactggagaaaaaaaaaaatggaactggcacagagatcaaggaaagatattgctgact 162912579
Query: 219 atctggctgctgggaaagatgaacgagctcgaatccgagtggagcacattattcgagaag 278
|||||||| |||||||||||||| |||| |||| ||| |||||||| ||||||||||||
Sbjct: 162912580 atctggctcttgggaaagatgaacaagcttgaattcgaatggagcaccttattcgagaag 162912639
Query: 279 actaccttgtggaggccatggagatcctggagctgtactgtgacctgc---tgctggctc 335
|||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 162912640 actatgttgtggaagccatggagatcctggagctgtactgtgagctgctgctgctggctc 162912699
Query: 336 ggtttggcctcatccagtctatgaaggagttagattctggtttggctgaatctgtgtcta 395
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 162912700 agtttgtcctcatccagtctatgaaggagttagattctagtttggctgaatctgtgtcta 162912759
Query: 396 cgctgatttgggctgctcctcgcctccagtcagaggtggctgagttgaaaatagttgctg 455
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 162912760 tgatgatttgggctgctcctcacctccagtcagaggtggctgagttgaaaatagttgctg 162912819
Query: 456 atcaactctgtgctaagtatagcaaggagtatggcaagttatgtaggaccaaccagattg 515
||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct: 162912820 atcaactttgtgctaagtacagcaaggaatatggcaagttatataggaccaaccagattg 162912879
Query: 516 gaactgtgaatgacaggctaatgcacaaactgagtgtggaagccccacccaagatcctgg 575
||||||||||||||| ||||||||||||||||| |||||||||||||||||| || | ||
Sbjct: 162912880 gaactgtgaatgacaagctaatgcacaaactgaatgtggaagccccacccaaaatgcagg 162912939
Query: 576 tggagagatacctgattgaaattgcgaagaactacaacgtgccctatgagcctgactctg 635
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 162912940 tggagagatacctgattgaaattgccaagaactacaatgtgccctatgagcctgactcta 162912999
Query: 636 tggtcatggcagaagctcctcctggagtagagacggatcttattgatgttggattcacag 695
||||||||||||||||||| ||| | ||| |||| |||||||||||||| ||||||| |
Sbjct: 162913000 tggtcatggcagaagctccccctagggtacagac--atcttattgatgttagattcactg 162913057
Query: 696 atgatgtgaagaaagggggctctggaagaggaggcgggggtgggttcacagcaccagttg 755
|||||||||| ||||||||||||| | ||||||| | | |||||| ||||||||||||
Sbjct: 162913058 atgatgtgaa-aaagggggctctgcagtaggaggcagagttgggttgacagcaccagtta 162913116
Query: 756 ggggacctgatggaacggtgccaatgcctatgcc 789
| |||||||||||||| |||||||||||||||||
Sbjct: 162913117 gtggacctgatggaacagtgccaatgcctatgcc 162913150
Score = 67.9 bits (34), Expect = 1e-08
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 938 gttgatgacattaatgccgataag-atgtctcttcccaaatcgttggtcctgaacccnag 996
||||||||||||||||| |||||| |||| ||||| ||||| || |||||| |||| ||
Sbjct: 162913194 gttgatgacattaatgctgataagaatgtatcttcacaaattatttgtcctgtacccaag 162913253
Query: 997 ccagaagcttctg 1009
|||||||||||||
Sbjct: 162913254 ccagaagcttctg 162913266
>Sscrofa_Chr06
|| Length = 157765593
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 643 ggcagaagctcctcctggagtagagacggatcttattgatgttggattcacagatgatgt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14466625 ggcagaagctcctcctggagtagagacggatcttattgatgttggattcacagatgatgt 14466566
Query: 703 gaagaaagggggctctggaagaggaggcgggggtgggttcacagcaccagttgggggacc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14466565 gaagaaagggggctctggaagaggaggcgggggtgggttcacagcaccagttgggggacc 14466506
Query: 763 tgatggaacggtgccaatgcctatgcccatgcccatgccatctccaagtactcctttctc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14466505 tgatggaacggtgccaatgcctatgcccatgcccatgccatctccaagtactcctttctc 14466446
Query: 823 gtacccgcttccaaagggacca 844
||||||||||||||||||||||
Sbjct: 14466445 gtacccgcttccaaagggacca 14466424
Score = 353 bits (178), Expect = 1e-94
Identities = 181/182 (99%)
Strand = Plus / Minus
Query: 180 cggaactggcccagaaagcaagaaaagagattgctgactatctggctgctgggaaagatg 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475850 cggaactagcccagaaagcaagaaaagagattgctgactatctggctgctgggaaagatg 14475791
Query: 240 aacgagctcgaatccgagtggagcacattattcgagaagactaccttgtggaggccatgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475790 aacgagctcgaatccgagtggagcacattattcgagaagactaccttgtggaggccatgg 14475731
Query: 300 agatcctggagctgtactgtgacctgctgctggctcggtttggcctcatccagtctatga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475730 agatcctggagctgtactgtgacctgctgctggctcggtttggcctcatccagtctatga 14475671
Query: 360 ag 361
||
Sbjct: 14475670 ag 14475669
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 532 gctaatgcacaaactgagtgtggaagccccacccaagatcctggtggagagatacctgat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14467637 gctaatgcacaaactgagtgtggaagccccacccaagatcctggtggagagatacctgat 14467578
Query: 592 tgaaattgcgaagaactacaacgtgccctatgagcctgactctgtggtcatgg 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14467577 tgaaattgcgaagaactacaacgtgccctatgagcctgactctgtggtcatgg 14467525
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 75 aggaggaacagcacagcatgttgggctctggatttaaagctgagcgtttacgagtcaatt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14476164 aggaggaacagcacagcatgttgggctctggatttaaagctgagcgtttacgagtcaatt 14476105
Query: 135 tgagattagtcataaaccgtcttaaactattggag 169
|||||||||||||||||||||||||||||||||||
Sbjct: 14476104 tgagattagtcataaaccgtcttaaactattggag 14476070
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 361 ggagttagattctggtttggctgaatctgtgtctacgctgatttgggctgctcctcgcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14474496 ggagttagattctggtttggctgaatctgtgtctacgctgatttgggctgctcctcgcct 14474437
Query: 421 ccagtcagaggtggctgagttgaaaatagt 450
||||||||||||||||||||||||||||||
Sbjct: 14474436 ccagtcagaggtggctgagttgaaaatagt 14474407
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 449 gttgctgatcaactctgtgctaagtatagcaaggagtatggcaagttatgtaggaccaac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14468237 gttgctgatcaactctgtgctaagtatagcaaggagtatggcaagttatgtaggaccaac 14468178
Query: 509 cagattggaactgtgaatgacagg 532
||||||||||||||||||||||||
Sbjct: 14468177 cagattggaactgtgaatgacagg 14468154
Score = 145 bits (73), Expect = 5e-32
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 1 aggagcggccatcttggatgttaagtctggatttcgaagtcgagtctctgcctttttcgc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489437 aggagcggccattttggatgttaagtctggatttcgaagtcgagtctctgcctttttcgc 14489378
Query: 61 gtccagatttggccagg 77
|||||||||||||||||
Sbjct: 14489377 gtccagatttggccagg 14489361
Score = 105 bits (53), Expect = 5e-20
Identities = 90/97 (92%), Gaps = 4/97 (4%)
Strand = Plus / Minus
Query: 845 tcggatttccatggaattgcc-gtgggaacttatcaggccttttccaaatattaatcc-c 902
||||||||| ||||| ||||| ||||||||||||||||||||| |||| |||| |||| |
Sbjct: 14465755 tcggatttcaatgga-ttgccagtgggaacttatcaggcctttcccaa-tattcatccac 14465698
Query: 903 ctcagattccagcaactcccccatcgtatgaatctgt 939
|||||||||||||||||||||||||||||||||||||
Sbjct: 14465697 ctcagattccagcaactcccccatcgtatgaatctgt 14465661
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,557,748
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 12
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)