Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012806
(1488 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029507.1| IST1 homolog [Bos taurus]. 533 e-151
>ref|NP_001029507.1| IST1 homolog [Bos taurus].
Length = 364
Score = 533 bits (1373), Expect = e-151
Identities = 283/357 (79%), Positives = 285/357 (79%), Gaps = 1/357 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSG KAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1139
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGGGGFTAPVGGPDGTVPMPMPMPMPSPN 240
Query: 1140 XXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSS-QIVGP 1316
FSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSS QIVGP
Sbjct: 241 TPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSTQIVGP 300
Query: 1317 GPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
GPKPE AK SR +T NFVLPELPSVPDTLPTAS GA+TSASE DFDDLSRRF
Sbjct: 301 GPKPEPPAKPASRLTETYDNFVLPELPSVPDTLPTASPGANTSASEDIDFDDLSRRF 357
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,966,389
Number of extensions: 1624433
Number of successful extensions: 6786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6751
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012806
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012806
(1488 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536798.2| PREDICTED: similar to Protein KIAA0174 isoform ... 543 e-154
Alignment gi|XP_862795.1| PREDICTED: similar to Protein KIAA0174 isoform ... 511 e-145
Alignment gi|XP_862770.1| PREDICTED: similar to Protein KIAA0174 isoform ... 487 e-137
Alignment gi|XP_862748.1| PREDICTED: similar to Protein KIAA0174 isoform ... 478 e-135
Alignment gi|XP_862819.1| PREDICTED: similar to Protein KIAA0174 isoform ... 461 e-129
>ref|XP_536798.2| PREDICTED: similar to Protein KIAA0174 isoform 1 [Canis familiaris].
Length = 366
Score = 543 bits (1398), Expect = e-154
Identities = 289/359 (80%), Positives = 291/359 (81%), Gaps = 3/359 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1133
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 1134 XXXXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSS-QIV 1310
FSYPLPKGPSDFNGLP+GTYQAFPNIHPPQIPATPPSYESVDDINAD NVSS QIV
Sbjct: 241 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADMNVSSAQIV 300
Query: 1311 GPGPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
GPGPKPEASAK PSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSRRF
Sbjct: 301 GPGPKPEASAKPPSRPVDTYDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSRRF 359
>ref|XP_862795.1| PREDICTED: similar to Protein KIAA0174 isoform 4 [Canis familiaris].
Length = 351
Score = 511 bits (1317), Expect = e-145
Identities = 275/358 (76%), Positives = 277/358 (77%), Gaps = 2/358 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1133
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 1134 XXXXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVG 1313
FSYPLPKGPSDFNGLP+GTYQAFPNIHPPQIPATPPSYES V
Sbjct: 241 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYES--------------VS 286
Query: 1314 PGPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
PGPKPEASAK PSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSRRF
Sbjct: 287 PGPKPEASAKPPSRPVDTYDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSRRF 344
>ref|XP_862770.1| PREDICTED: similar to Protein KIAA0174 isoform 3 [Canis familiaris].
Length = 341
Score = 487 bits (1253), Expect = e-137
Identities = 265/358 (74%), Positives = 267/358 (74%), Gaps = 2/358 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1133
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 240
Query: 1134 XXXXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVG 1313
FSYPLPKGPSDFNGLP+GTYQAFPNIHPPQIPATPPSYESV
Sbjct: 241 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESV--------------- 285
Query: 1314 PGPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
PSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSRRF
Sbjct: 286 ---------SPPSRPVDTYDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSRRF 334
>ref|XP_862748.1| PREDICTED: similar to Protein KIAA0174 isoform 2 [Canis familiaris].
Length = 361
Score = 478 bits (1230), Expect = e-135
Identities = 265/359 (73%), Positives = 272/359 (75%), Gaps = 3/359 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
+ K SK + ++ + LMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 SRMFVLK-SKNRSMVTDDWKL----EALMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 175
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1133
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 176 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPVPMPMPMPMPS 235
Query: 1134 XXXXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSS-QIV 1310
FSYPLPKGPSDFNGLP+GTYQAFPNIHPPQIPATPPSYESVDDINAD NVSS QIV
Sbjct: 236 PSTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESVDDINADMNVSSAQIV 295
Query: 1311 GPGPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
GPGPKPEASAK PSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSRRF
Sbjct: 296 GPGPKPEASAKPPSRPVDTYDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSRRF 354
>ref|XP_862819.1| PREDICTED: similar to Protein KIAA0174 isoform 5 [Canis familiaris].
Length = 335
Score = 461 bits (1185), Expect = e-129
Identities = 263/362 (72%), Positives = 267/362 (73%), Gaps = 6/362 (1%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1139
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKK--------------------------GGSGRGGG 214
Query: 1140 XXFSYPLPKGPSDFNGLPVGTYQA-FPNIHPPQIPATPPSYE----SVDDINADKNVSS- 1301
F+ P+ G P GT P P P+TP SY VDDINAD NVSS
Sbjct: 215 GGFTAPV--------GGPDGTVPVPMPMPMPMPSPSTPFSYPLPKGPVDDINADMNVSSA 266
Query: 1302 QIVGPGPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSR 1481
QIVGPGPKPEASAK PSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSR
Sbjct: 267 QIVGPGPKPEASAKPPSRPVDTYDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSR 326
Query: 1482 RF 1487
RF
Sbjct: 327 RF 328
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,581,541
Number of extensions: 1666911
Number of successful extensions: 6916
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6823
Number of HSP's successfully gapped: 11
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012806
(1488 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126959.2| PREDICTED: IST1 homolog [Sus scrofa]. 558 e-159
Alignment gi|XP_003355811.1| PREDICTED: IST1 homolog [Sus scrofa]. 425 e-119
Alignment gi|XP_003361803.1| PREDICTED: IST1 homolog, partial [Sus scrofa]. 387 e-108
>ref|XP_003126959.2| PREDICTED: IST1 homolog [Sus scrofa].
Length = 363
Score = 558 bits (1439), Expect = e-159
Identities = 292/356 (82%), Positives = 293/356 (82%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1139
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPMPMPMPMPSPS 240
Query: 1140 XXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVGPG 1319
FSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVGPG
Sbjct: 241 TPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVGPG 300
Query: 1320 PKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
PKPEASAKTPSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSRRF
Sbjct: 301 PKPEASAKTPSRPVDTHDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSRRF 356
>ref|XP_003355811.1| PREDICTED: IST1 homolog [Sus scrofa].
Length = 285
Score = 425 bits (1093), Expect = e-119
Identities = 224/283 (79%), Positives = 224/283 (79%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1139
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPMPMPMPMPSPS 240
Query: 1140 XXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESV 1268
FSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESV
Sbjct: 241 TPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESV 283
>ref|XP_003361803.1| PREDICTED: IST1 homolog, partial [Sus scrofa].
Length = 244
Score = 387 bits (994), Expect = e-108
Identities = 196/237 (82%), Positives = 197/237 (83%)
Frame = +3
Query: 777 VADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 956
VADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP
Sbjct: 1 VADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 60
Query: 957 DSVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1136
DSVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 61 DSVVMAEAPPGVETDLIDVGFTDDVKKGGSGRGGGGGFTAPVGGPDGTVPMPMPMPMPSP 120
Query: 1137 XXXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVGP 1316
FSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVGP
Sbjct: 121 STPFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSSQIVGP 180
Query: 1317 GPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
GPKPEASAKTPSRPVDT NFVLPELPSVPDTLPTASAGA+TSASE DFDDLSRRF
Sbjct: 181 GPKPEASAKTPSRPVDTHDNFVLPELPSVPDTLPTASAGANTSASEDIDFDDLSRRF 237
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,960,707
Number of extensions: 1071038
Number of successful extensions: 4501
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4485
Number of HSP's successfully gapped: 3
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012806
(1488 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082294.1| IST1 homolog [Mus musculus]. 524 e-149
Alignment gi|NP_001034789.2| polycystic kidney disease protein 1-like 3 i... 63 7e-10
>ref|NP_082294.1| IST1 homolog [Mus musculus].
Length = 362
Score = 524 bits (1350), Expect = e-149
Identities = 281/357 (78%), Positives = 283/357 (79%), Gaps = 1/357 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1139
SVVMAEAP GVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPVGVETDLIDVGFTDDVKKGGPGRGGGGGFTAPVGGPDGIVPMPMPMPMPSPN 240
Query: 1140 XXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESVDDINADKNVSS-QIVGP 1316
F+YPLPKGPSDF+GLPVGTYQAFPNIHPPQIPATPPSYESVDDIN DK VSS QIV
Sbjct: 241 APFAYPLPKGPSDFSGLPVGTYQAFPNIHPPQIPATPPSYESVDDINGDKTVSSAQIV-- 298
Query: 1317 GPKPEASAKTPSRPVDTQGNFVLPELPSVPDTLPTASAGAHTSASEGYDFDDLSRRF 1487
GPKPEA AK PSRPVD FVLPELPSVPDTLPTASAGA TSASE DFDDLSRRF
Sbjct: 299 GPKPEAPAKPPSRPVDNYNTFVLPELPSVPDTLPTASAGASTSASEDIDFDDLSRRF 355
>ref|NP_001034789.2| polycystic kidney disease protein 1-like 3 isoform a [Mus musculus].
Length = 2201
Score = 62.8 bits (151), Expect = 7e-10
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = -3
Query: 1486 NLRERSSKSYPSDAEVWAPADAVGRVSGTDGSSGSTK 1376
NLRERSSKS SDAEV APADAVG VSGTDG+SGSTK
Sbjct: 2163 NLRERSSKSMSSDAEVLAPADAVGSVSGTDGNSGSTK 2199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,059,949
Number of extensions: 1344086
Number of successful extensions: 5359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5322
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012806
(1488 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055576.2| IST1 homolog [Homo sapiens]. 418 e-134
>ref|NP_055576.2| IST1 homolog [Homo sapiens].
Length = 360
Score = 418 bits (1074), Expect(2) = e-134
Identities = 222/285 (77%), Positives = 224/285 (78%), Gaps = 2/285 (0%)
Frame = +3
Query: 420 MLGSGFKAEXXXXXXXXXXXXXXXXXXXXXXXAQKARKEIADYLAAGKDERARIRVEHII 599
MLGSGFKAE AQKARKEIADYLAAGKDERARIRVEHII
Sbjct: 1 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 60
Query: 600 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 779
REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV
Sbjct: 61 REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 120
Query: 780 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 959
ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD
Sbjct: 121 ADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPD 180
Query: 960 SVVMAEAPPGVETDLIDVGFTDDVKK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1133
SVVMAEAPPGVETDLIDVGFTDDVKK
Sbjct: 181 SVVMAEAPPGVETDLIDVGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPS 240
Query: 1134 XXXXFSYPLPKGPSDFNGLPVGTYQAFPNIHPPQIPATPPSYESV 1268
FSYPLPKGPSDFNGLP+GTYQAFPNIHPPQIPATPPSYES+
Sbjct: 241 ANTPFSYPLPKGPSDFNGLPMGTYQAFPNIHPPQIPATPPSYESM 285
Score = 80.1 bits (196), Expect(2) = e-134
Identities = 40/57 (70%), Positives = 42/57 (73%)
Frame = +1
Query: 1318 DPSQKLLQRPLPGPWIPKETLYCQNCHLCQTPYQLHLLVPTPQHLKDMTLMIFPGDL 1488
DPSQK LQ LP I TL Q+CHLCQT YQLHLLVP PQHLK +TLMIFPG L
Sbjct: 302 DPSQKPLQSFLPDLQITMTTLSYQSCHLCQTHYQLHLLVPAPQHLKTLTLMIFPGGL 358
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,262,841
Number of extensions: 1632333
Number of successful extensions: 6660
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6623
Number of HSP's successfully gapped: 3
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012806
(1488 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 783 0.0
Sscrofa_Chr06 531 e-148
gb|JH118898.1| Sus scrofa unplaced genomic scaffold ChrUScaf3272 291 6e-76
>Sscrofa_Chr13
|| Length = 218635234
Score = 783 bits (395), Expect = 0.0
Identities = 620/694 (89%), Gaps = 7/694 (1%)
Strand = Plus / Plus
Query: 428 ctctggatttaaagctgagcgtttacgagtcaatttgagattagtcataaaccgtcttaa 487
|||||||||||||||||||| ||| | | |||||||||||||||||||||||| ||||||
Sbjct: 162912460 ctctggatttaaagctgagcattttctattcaatttgagattagtcataaaccatcttaa 162912519
Query: 488 actattggagnnnnnnnnnnc-ggaactggcccagaaagcaagaaaagagattgctgact 546
|||| ||||| ||||||||| |||| | |||| ||||| ||||||||||
Sbjct: 162912520 actactggagaaaaaaaaaaatggaactggcacagagatcaaggaaagatattgctgact 162912579
Query: 547 atctggctgctgggaaagatgaacgagctcgaatccgagtggagcacattattcgagaag 606
|||||||| |||||||||||||| |||| |||| ||| |||||||| ||||||||||||
Sbjct: 162912580 atctggctcttgggaaagatgaacaagcttgaattcgaatggagcaccttattcgagaag 162912639
Query: 607 actaccttgtggaggccatggagatcctggagctgtactgtgacctgc---tgctggctc 663
|||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 162912640 actatgttgtggaagccatggagatcctggagctgtactgtgagctgctgctgctggctc 162912699
Query: 664 ggtttggcctcatccagtctatgaaggagttagattctggtttggctgaatctgtgtcta 723
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 162912700 agtttgtcctcatccagtctatgaaggagttagattctagtttggctgaatctgtgtcta 162912759
Query: 724 cgctgatttgggctgctcctcgcctccagtcagaggtggctgagttgaaaatagttgctg 783
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 162912760 tgatgatttgggctgctcctcacctccagtcagaggtggctgagttgaaaatagttgctg 162912819
Query: 784 atcaactctgtgctaagtatagcaaggagtatggcaagttatgtaggaccaaccagattg 843
||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct: 162912820 atcaactttgtgctaagtacagcaaggaatatggcaagttatataggaccaaccagattg 162912879
Query: 844 gaactgtgaatgacaggctaatgcacaaactgagtgtggaagccccacccaagatcctgg 903
||||||||||||||| ||||||||||||||||| |||||||||||||||||| || | ||
Sbjct: 162912880 gaactgtgaatgacaagctaatgcacaaactgaatgtggaagccccacccaaaatgcagg 162912939
Query: 904 tggagagatacctgattgaaattgcgaagaactacaacgtgccctatgagcctgactctg 963
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 162912940 tggagagatacctgattgaaattgccaagaactacaatgtgccctatgagcctgactcta 162912999
Query: 964 tggtcatggcagaagctcctcctggagtagagacggatcttattgatgttggattcacag 1023
||||||||||||||||||| ||| | ||| |||| |||||||||||||| ||||||| |
Sbjct: 162913000 tggtcatggcagaagctccccctagggtacagac--atcttattgatgttagattcactg 162913057
Query: 1024 atgatgtgaagaaagggggctctggaagaggaggcgggggtgggttcacagcaccagttg 1083
|||||||||| ||||||||||||| | ||||||| | | |||||| ||||||||||||
Sbjct: 162913058 atgatgtgaa-aaagggggctctgcagtaggaggcagagttgggttgacagcaccagtta 162913116
Query: 1084 ggggacctgatggaacggtgccaatgcctatgcc 1117
| |||||||||||||| |||||||||||||||||
Sbjct: 162913117 gtggacctgatggaacagtgccaatgcctatgcc 162913150
Score = 192 bits (97), Expect = 4e-46
Identities = 192/221 (86%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 1266 gttgatgacattaatgctgataagaatgtctcttcgcagatcgttggtcctggacccaag 1325
||||||||||||||||||||||||||||| ||||| || || || |||||| |||||||
Sbjct: 162913194 gttgatgacattaatgctgataagaatgtatcttcacaaattatttgtcctgtacccaag 162913253
Query: 1326 ccagaagcttctgcaaagaccccttccaggcccgtggatacccaaggaaactttgtactg 1385
||||||||||||| |||| ||||||||| ||| |||||||| | | ||||||||||||
Sbjct: 162913254 ccagaagcttctgaaaagctcccttccagacccatggatacctatgacaactttgtactg 162913313
Query: 1386 ccagaactgccatctgtgccagacaccctaccaactgcatctgctggtgcccacacctca 1445
||| |||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct: 162913314 ccaaaactatcatctgtgccagacatactaccaactacatctgctggtgccaacacctca 162913373
Query: 1446 gcatctgaaggata-tgactttgatgatctttcccggagat 1485
||||||| |||| | ||||| ||||||||||| | ||||||
Sbjct: 162913374 gcatctg-aggacactgactatgatgatcttttctggagat 162913413
>Sscrofa_Chr06
|| Length = 157765593
Score = 531 bits (268), Expect = e-148
Identities = 271/272 (99%)
Strand = Plus / Minus
Query: 1 ccggagcaaggcactgggcgcggactctgagactaagcctccgcggccatcctggcgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489769 ccggagcaaggcactgggcgcggactctgagactaagcctccgcggccatcctggcgccc 14489710
Query: 61 agggcaagacctgtgacacccagggcgcgcccaagtaggtgactcagccggcgagaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489709 agggcaagacctgtgacacccagggcgcgcccaagtaggtgactcagccggcgagaggga 14489650
Query: 121 actctgccgcggacagtatctctgtcgtcgcaagtagtccccagccgcccagctcggaaa 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14489649 actctgccgcggacagtatctctgttgtcgcaagtagtccccagccgcccagctcggaaa 14489590
Query: 181 ggagctgagtgagagaacccgtagggccttggagcggtgagtcccgggccctgcgggcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489589 ggagctgagtgagagaacccgtagggccttggagcggtgagtcccgggccctgcgggcgc 14489530
Query: 241 gcagccaatccctggaaagggggcgtggctat 272
||||||||||||||||||||||||||||||||
Sbjct: 14489529 gcagccaatccctggaaagggggcgtggctat 14489498
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 971 ggcagaagctcctcctggagtagagacggatcttattgatgttggattcacagatgatgt 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14466625 ggcagaagctcctcctggagtagagacggatcttattgatgttggattcacagatgatgt 14466566
Query: 1031 gaagaaagggggctctggaagaggaggcgggggtgggttcacagcaccagttgggggacc 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14466565 gaagaaagggggctctggaagaggaggcgggggtgggttcacagcaccagttgggggacc 14466506
Query: 1091 tgatggaacggtgccaatgcctatgcccatgcccatgccatctccaagtactcctttctc 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14466505 tgatggaacggtgccaatgcctatgcccatgcccatgccatctccaagtactcctttctc 14466446
Query: 1151 gtacccgcttccaaagggacca 1172
||||||||||||||||||||||
Sbjct: 14466445 gtacccgcttccaaagggacca 14466424
Score = 353 bits (178), Expect = 2e-94
Identities = 181/182 (99%)
Strand = Plus / Minus
Query: 508 cggaactggcccagaaagcaagaaaagagattgctgactatctggctgctgggaaagatg 567
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475850 cggaactagcccagaaagcaagaaaagagattgctgactatctggctgctgggaaagatg 14475791
Query: 568 aacgagctcgaatccgagtggagcacattattcgagaagactaccttgtggaggccatgg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475790 aacgagctcgaatccgagtggagcacattattcgagaagactaccttgtggaggccatgg 14475731
Query: 628 agatcctggagctgtactgtgacctgctgctggctcggtttggcctcatccagtctatga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475730 agatcctggagctgtactgtgacctgctgctggctcggtttggcctcatccagtctatga 14475671
Query: 688 ag 689
||
Sbjct: 14475670 ag 14475669
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 860 gctaatgcacaaactgagtgtggaagccccacccaagatcctggtggagagatacctgat 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14467637 gctaatgcacaaactgagtgtggaagccccacccaagatcctggtggagagatacctgat 14467578
Query: 920 tgaaattgcgaagaactacaacgtgccctatgagcctgactctgtggtcatgg 972
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14467577 tgaaattgcgaagaactacaacgtgccctatgagcctgactctgtggtcatgg 14467525
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 295 atccctccgcccgctctagcagtgctgaggccgaaggagcggccattttggatgttaagt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489471 atccctccgcccgctctagcagtgctgaggccgaaggagcggccattttggatgttaagt 14489412
Query: 355 ctggatttcgaagtcgagtctctgcctttttcgcgtccagatttggccagg 405
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489411 ctggatttcgaagtcgagtctctgcctttttcgcgtccagatttggccagg 14489361
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1173 tcggatttcaatggattgccagtgggaacttatcaggcctttcccaatattcatccacct 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14465755 tcggatttcaatggattgccagtgggaacttatcaggcctttcccaatattcatccacct 14465696
Query: 1233 cagattccagcaactcccccatcgtatgaatctgt 1267
|||||||||||||||||||||||||||||||||||
Sbjct: 14465695 cagattccagcaactcccccatcgtatgaatctgt 14465661
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 403 aggaggaacagcacagcatgttgggctctggatttaaagctgagcgtttacgagtcaatt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14476164 aggaggaacagcacagcatgttgggctctggatttaaagctgagcgtttacgagtcaatt 14476105
Query: 463 tgagattagtcataaaccgtcttaaactattggag 497
|||||||||||||||||||||||||||||||||||
Sbjct: 14476104 tgagattagtcataaaccgtcttaaactattggag 14476070
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 689 ggagttagattctggtttggctgaatctgtgtctacgctgatttgggctgctcctcgcct 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14474496 ggagttagattctggtttggctgaatctgtgtctacgctgatttgggctgctcctcgcct 14474437
Query: 749 ccagtcagaggtggctgagttgaaaatagt 778
||||||||||||||||||||||||||||||
Sbjct: 14474436 ccagtcagaggtggctgagttgaaaatagt 14474407
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 777 gttgctgatcaactctgtgctaagtatagcaaggagtatggcaagttatgtaggaccaac 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14468237 gttgctgatcaactctgtgctaagtatagcaaggagtatggcaagttatgtaggaccaac 14468178
Query: 837 cagattggaactgtgaatgacagg 860
||||||||||||||||||||||||
Sbjct: 14468177 cagattggaactgtgaatgacagg 14468154
>gb|JH118898.1| Sus scrofa unplaced genomic scaffold ChrUScaf3272
Length = 153184
Score = 291 bits (147), Expect = 6e-76
Identities = 173/179 (96%), Gaps = 2/179 (1%)
Strand = Plus / Minus
Query: 1311 ggtcctggacccaagccagaagcttctgcaaagaccccttccaggcccgtggatacccaa 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150177 ggtcctggacccaagccagaagcttctgcaaagaccccttccaggcccgtggatacccat 150118
Query: 1371 ggaaactttgtactgccagaactgccatctgtgccagacaccctaccaactgcatctgct 1430
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150117 gacaactttgtactgccagaactgccatctgtgccagacaccctaccaactgcatctgct 150058
Query: 1431 ggtgcccacacctcagcatctgaaggata-tgactttgatgatctttcccggagatttg 1488
|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 150057 ggtgccaacacctcagcatctg-aggatattgactttgatgatctttcccggagatttg 150000
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 1266 gttgatgacattaatgctgataagaatgtctcttcgcagatcgttggt 1313
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151653 gttgatgacattaatgctgataagaatgtctcttcgcagatcgttggt 151606
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,004,457
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 15
Length of query: 1488
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1467
Effective length of database: 2,808,413,156
Effective search space: 4119942099852
Effective search space used: 4119942099852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)