Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012811
(1399 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542525.1| PREDICTED: similar to tumor susceptibility gene... 709 0.0
Alignment gi|XP_865453.1| PREDICTED: similar to tumor susceptibility gene... 700 0.0
Alignment gi|XP_865435.1| PREDICTED: similar to tumor susceptibility gene... 613 e-175
Alignment gi|XP_865419.1| PREDICTED: similar to tumor susceptibility gene... 285 1e-76
Alignment gi|XP_865399.1| PREDICTED: similar to tumor susceptibility gene... 167 3e-41
Alignment gi|XP_854826.1| PREDICTED: similar to ubiquitin-conjugating enz... 164 1e-40
>ref|XP_542525.1| PREDICTED: similar to tumor susceptibility gene 101 isoform 1 [Canis
familiaris].
Length = 391
Score = 709 bits (1830), Expect = 0.0
Identities = 360/391 (92%), Positives = 362/391 (92%)
Frame = +2
Query: 164 MAGSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 343
MA SESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
Sbjct: 1 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 60
Query: 344 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 523
VPY+GN YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
Sbjct: 61 VPYKGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 120
Query: 524 QSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGISAXXXXXX 703
QSDLLGLIQVMIVVFGDEPPVFSRPT+SASYPPYQATGPPNTSYMP MPSGISA
Sbjct: 121 QSDLLGLIQVMIVVFGDEPPVFSRPTISASYPPYQATGPPNTSYMPSMPSGISAYPSGYP 180
Query: 704 XXXXXXXXXXXXXXXXXXATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 883
ATTSSQYPSQPPV TVGPSRDGTISEDTIRASLISAVSDKLR
Sbjct: 181 PNPSGYPGCPYPPGGQYPATTSSQYPSQPPVATVGPSRDGTISEDTIRASLISAVSDKLR 240
Query: 884 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELS 1063
WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELS
Sbjct: 241 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELS 300
Query: 1064 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 1243
SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF
Sbjct: 301 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 360
Query: 1244 LKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
LKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 361 LKHVRLLSRKQFQLRALMQKARKTAGLSDLY 391
>ref|XP_865453.1| PREDICTED: similar to tumor susceptibility gene 101 isoform 5 [Canis
familiaris].
Length = 399
Score = 700 bits (1807), Expect = 0.0
Identities = 359/399 (89%), Positives = 361/399 (90%), Gaps = 8/399 (2%)
Frame = +2
Query: 164 MAGSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 343
MA SESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
Sbjct: 1 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 60
Query: 344 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 523
VPY+GN YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
Sbjct: 61 VPYKGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 120
Query: 524 QSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGISAXXXXXX 703
QSDLLGLIQVMIVVFGDEPPVFSRPT+SASYPPYQATGPPNTSYMP MPSGISA
Sbjct: 121 QSDLLGLIQVMIVVFGDEPPVFSRPTISASYPPYQATGPPNTSYMPSMPSGISAYPSGYP 180
Query: 704 XXXXXXXXXXXXXXXXXXATTSSQYPSQPPVTT--------VGPSRDGTISEDTIRASLI 859
ATTSSQYPSQPPV T GPSRDGTISEDTIRASLI
Sbjct: 181 PNPSGYPGCPYPPGGQYPATTSSQYPSQPPVATPVASAFFLAGPSRDGTISEDTIRASLI 240
Query: 860 SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 1039
SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL
Sbjct: 241 SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 300
Query: 1040 RKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRR 1219
RKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRR
Sbjct: 301 RKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRR 360
Query: 1220 GVIDLDVFLKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
GVIDLDVFLKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 361 GVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLSDLY 399
>ref|XP_865435.1| PREDICTED: similar to tumor susceptibility gene 101 isoform 4 [Canis
familiaris].
Length = 339
Score = 613 bits (1580), Expect = e-175
Identities = 309/339 (91%), Positives = 311/339 (91%)
Frame = +2
Query: 320 MNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLP 499
MNLTGTIPVPY+GN YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLP
Sbjct: 1 MNLTGTIPVPYKGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLP 60
Query: 500 YLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGI 679
YLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRPT+SASYPPYQATGPPNTSYMP MPSGI
Sbjct: 61 YLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRPTISASYPPYQATGPPNTSYMPSMPSGI 120
Query: 680 SAXXXXXXXXXXXXXXXXXXXXXXXXATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLI 859
SA ATTSSQYPSQPPV TVGPSRDGTISEDTIRASLI
Sbjct: 121 SAYPSGYPPNPSGYPGCPYPPGGQYPATTSSQYPSQPPVATVGPSRDGTISEDTIRASLI 180
Query: 860 SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 1039
SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL
Sbjct: 181 SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 240
Query: 1040 RKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRR 1219
RKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRR
Sbjct: 241 RKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRR 300
Query: 1220 GVIDLDVFLKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
GVIDLDVFLKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 301 GVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLSDLY 339
>ref|XP_865419.1| PREDICTED: similar to tumor susceptibility gene 101 isoform 3 [Canis
familiaris].
Length = 149
Score = 285 bits (728), Expect = 1e-76
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +2
Query: 890 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELSSA 1069
MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELSSA
Sbjct: 1 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELSSA 60
Query: 1070 LEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLK 1249
LEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLK
Sbjct: 61 LEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLK 120
Query: 1250 HVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
HVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 121 HVRLLSRKQFQLRALMQKARKTAGLSDLY 149
>ref|XP_865399.1| PREDICTED: similar to tumor susceptibility gene 101 isoform 2 [Canis
familiaris].
Length = 86
Score = 167 bits (422), Expect = 3e-41
Identities = 85/86 (98%), Positives = 85/86 (98%)
Frame = +2
Query: 1079 MENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVR 1258
MENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVR
Sbjct: 1 MENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVR 60
Query: 1259 LLSRKQFQLRALMAKARKTAGLSDLY 1336
LLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 61 LLSRKQFQLRALMQKARKTAGLSDLY 86
>ref|XP_854826.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2-like [Canis
familiaris].
Length = 540
Score = 164 bits (416), Expect = 1e-40
Identities = 73/129 (56%), Positives = 97/129 (75%)
Frame = +2
Query: 206 YKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICL 385
Y +RDLTV E NV + + +D+YVF D S ++L+N TGTIPV Y+GNTYNIPI L
Sbjct: 84 YTFRDLTVEELKNVNRFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNIPIRL 143
Query: 386 WLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVV 565
W+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GLI+ MI
Sbjct: 144 WILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAK 203
Query: 566 FGDEPPVFS 592
F +E P++S
Sbjct: 204 FQEELPLYS 212
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,766,355
Number of extensions: 1435041
Number of successful extensions: 9373
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9139
Number of HSP's successfully gapped: 6
Length of query: 466
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 360
Effective length of database: 15,340,888
Effective search space: 5522719680
Effective search space used: 5522719680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012811
(1399 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091464.1| tumor susceptibility gene 101 protein [Bos t... 716 0.0
Alignment gi|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [B... 171 1e-42
>ref|NP_001091464.1| tumor susceptibility gene 101 protein [Bos taurus].
Length = 391
Score = 716 bits (1849), Expect = 0.0
Identities = 363/391 (92%), Positives = 365/391 (93%)
Frame = +2
Query: 164 MAGSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 343
MAGSESQLKKMVSKYKYRDLTVRETVNVI+LYKDLKPVLDSYVFNDGSSRELMNLTGTIP
Sbjct: 1 MAGSESQLKKMVSKYKYRDLTVRETVNVISLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 60
Query: 344 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 523
VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
Sbjct: 61 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 120
Query: 524 QSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGISAXXXXXX 703
QSDLLGLIQVMIVVFGDEPPVFSRPT+SASYPPYQATGPPNTSYMPGMPSGISA
Sbjct: 121 QSDLLGLIQVMIVVFGDEPPVFSRPTVSASYPPYQATGPPNTSYMPGMPSGISAYPSGYP 180
Query: 704 XXXXXXXXXXXXXXXXXXATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 883
ATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR
Sbjct: 181 PNPSGYTGCPYPPGGQYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 240
Query: 884 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELS 1063
WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV RLDQEVAEVDKNIELLRKKDEELS
Sbjct: 241 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVNRLDQEVAEVDKNIELLRKKDEELS 300
Query: 1064 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 1243
SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF
Sbjct: 301 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 360
Query: 1244 LKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
LKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 361 LKHVRLLSRKQFQLRALMQKARKTAGLSDLY 391
>ref|NP_001092422.1| ubiquitin-conjugating enzyme E2 variant 3 [Bos taurus].
Length = 471
Score = 171 bits (434), Expect = 1e-42
Identities = 77/136 (56%), Positives = 103/136 (75%)
Frame = +2
Query: 185 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 364
L++++ KYK+RDLTV E NV + + +D+YVF D S ++L+N TGTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELKNVNMFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVIYQGNT 67
Query: 365 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 544
YNIPI LW+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRLWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 545 IQVMIVVFGDEPPVFS 592
I+ MI F DE P+ S
Sbjct: 128 IKEMIAKFQDELPLCS 143
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,458,164
Number of extensions: 1382121
Number of successful extensions: 8304
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8024
Number of HSP's successfully gapped: 2
Length of query: 466
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,174,046
Effective search space: 5102656560
Effective search space used: 5102656560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012811
(1399 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122981.2| PREDICTED: tumor susceptibility gene 101 pro... 338 3e-93
Alignment gi|XP_003122980.2| PREDICTED: ubiquitin-conjugating enzyme E2 v... 172 5e-43
Alignment gi|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 v... 172 5e-43
Alignment gi|XP_003353980.1| PREDICTED: ubiquitin-conjugating enzyme E2 v... 92 7e-19
>ref|XP_003122981.2| PREDICTED: tumor susceptibility gene 101 protein-like [Sus scrofa].
Length = 187
Score = 338 bits (868), Expect = 3e-93
Identities = 176/177 (99%), Positives = 176/177 (99%)
Frame = +2
Query: 806 GPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM 985
GPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM
Sbjct: 11 GPSRDGTISEDTIRASLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM 70
Query: 986 VTRLDQEVAEVDKNIELLRKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYA 1165
VTRLDQEVAEVDKNIELLRKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYA
Sbjct: 71 VTRLDQEVAEVDKNIELLRKKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYA 130
Query: 1166 EENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
EENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 131 EENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLRALMQKARKTAGLSDLY 187
>ref|XP_003122980.2| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3 [Sus scrofa].
Length = 217
Score = 172 bits (435), Expect = 5e-43
Identities = 75/136 (55%), Positives = 104/136 (76%)
Frame = +2
Query: 185 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 364
L++++ KYK+RDLTV E NV + + +D+YVF D S ++L+N +GTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFSGTIPVMYQGNT 67
Query: 365 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 544
YNIPI LW+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRLWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 545 IQVMIVVFGDEPPVFS 592
I+ MI F +E P++S
Sbjct: 128 IKEMITKFQEELPLYS 143
>ref|XP_003353977.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3-like [Sus
scrofa].
Length = 375
Score = 172 bits (435), Expect = 5e-43
Identities = 75/136 (55%), Positives = 104/136 (76%)
Frame = +2
Query: 185 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 364
L++++ KYK+RDLTV E NV + + +D+YVF D S ++L+N +GTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFSGTIPVMYQGNT 67
Query: 365 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 544
YNIPI LW+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRLWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 545 IQVMIVVFGDEPPVFS 592
I+ MI F +E P++S
Sbjct: 128 IKEMITKFQEELPLYS 143
>ref|XP_003353980.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 3-like [Sus
scrofa].
Length = 189
Score = 92.0 bits (227), Expect = 7e-19
Identities = 44/54 (81%), Positives = 45/54 (83%)
Frame = +2
Query: 521 PQSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGIS 682
PQSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPN G +S
Sbjct: 30 PQSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNMPTWGGQEEAVS 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,470,384
Number of extensions: 886233
Number of successful extensions: 5279
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5094
Number of HSP's successfully gapped: 4
Length of query: 466
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,804,438
Effective search space: 3204815432
Effective search space used: 3204815432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012811
(1399 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068684.1| tumor susceptibility gene 101 protein [Mus musc... 688 0.0
Alignment gi|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [M... 169 4e-42
>ref|NP_068684.1| tumor susceptibility gene 101 protein [Mus musculus].
Length = 391
Score = 688 bits (1776), Expect = 0.0
Identities = 347/391 (88%), Positives = 359/391 (91%)
Frame = +2
Query: 164 MAGSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 343
MA SESQLKKM+SKYKYRDLTVR+TVNVI +YKDLKPVLDSYVFNDGSSREL+NLTGTIP
Sbjct: 1 MAVSESQLKKMMSKYKYRDLTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIP 60
Query: 344 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 523
V YRGN YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH+WKHP
Sbjct: 61 VRYRGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHDWKHP 120
Query: 524 QSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGISAXXXXXX 703
+S+LL LIQ+MIV+FG+EPPVFSRPT+SASYPPY ATGPPNTSYMPGMPSGISA
Sbjct: 121 RSELLELIQIMIVIFGEEPPVFSRPTVSASYPPYTATGPPNTSYMPGMPSGISAYPSGYP 180
Query: 704 XXXXXXXXXXXXXXXXXXATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 883
ATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR
Sbjct: 181 PNPSGYPGCPYPPAGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 240
Query: 884 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELS 1063
WRMKEEMD AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL+KKDEELS
Sbjct: 241 WRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 300
Query: 1064 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 1243
SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF
Sbjct: 301 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 360
Query: 1244 LKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
LKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 361 LKHVRLLSRKQFQLRALMQKARKTAGLSDLY 391
>ref|NP_001035785.1| ubiquitin-conjugating enzyme E2 variant 3 [Mus musculus].
Length = 471
Score = 169 bits (429), Expect = 4e-42
Identities = 74/139 (53%), Positives = 104/139 (74%)
Frame = +2
Query: 185 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 364
+++++ KYK+RDLTV E NV + + +D+YVF D S ++L+N TGTIPV Y+G T
Sbjct: 8 VRRLLGKYKFRDLTVEELKNVSVSFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKT 67
Query: 365 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 544
YNIPI W+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRFWILDSHPFAPPICFLKPTANMEISVGKHVDAKGRIYLPYLQNWSHPKSAIVGL 127
Query: 545 IQVMIVVFGDEPPVFSRPT 601
I+ MI F +E P++S P+
Sbjct: 128 IKEMIAKFQEELPLYSIPS 146
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,111,652
Number of extensions: 1191745
Number of successful extensions: 6950
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6673
Number of HSP's successfully gapped: 2
Length of query: 466
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 361
Effective length of database: 12,463,779
Effective search space: 4499424219
Effective search space used: 4499424219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012811
(1399 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006283.1| tumor susceptibility gene 101 protein [Homo sap... 706 0.0
Alignment gi|NP_001035787.1| ubiquitin-conjugating enzyme E2 variant 3 is... 172 9e-43
Alignment gi|NP_060784.3| ubiquitin-conjugating enzyme E2 variant 3 isofo... 172 9e-43
>ref|NP_006283.1| tumor susceptibility gene 101 protein [Homo sapiens].
Length = 390
Score = 706 bits (1821), Expect = 0.0
Identities = 360/391 (92%), Positives = 362/391 (92%)
Frame = +2
Query: 164 MAGSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 343
MA SESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP
Sbjct: 1 MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIP 60
Query: 344 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 523
VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP
Sbjct: 61 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 120
Query: 524 QSDLLGLIQVMIVVFGDEPPVFSRPTLSASYPPYQATGPPNTSYMPGMPSGISAXXXXXX 703
QSDLLGLIQVMIVVFGDEPPVFSRP +SASYPPYQATGPPNTSYMPGMP GIS
Sbjct: 121 QSDLLGLIQVMIVVFGDEPPVFSRP-ISASYPPYQATGPPNTSYMPGMPGGISPYPSGYP 179
Query: 704 XXXXXXXXXXXXXXXXXXATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 883
ATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR
Sbjct: 180 PNPSGYPGCPYPPGGPYPATTSSQYPSQPPVTTVGPSRDGTISEDTIRASLISAVSDKLR 239
Query: 884 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLRKKDEELS 1063
WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL+KKDEELS
Sbjct: 240 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 299
Query: 1064 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 1243
SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF
Sbjct: 300 SALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVF 359
Query: 1244 LKHVRLLSRKQFQLRALMAKARKTAGLSDLY 1336
LKHVRLLSRKQFQLRALM KARKTAGLSDLY
Sbjct: 360 LKHVRLLSRKQFQLRALMQKARKTAGLSDLY 390
>ref|NP_001035787.1| ubiquitin-conjugating enzyme E2 variant 3 isoform a [Homo sapiens].
Length = 471
Score = 172 bits (435), Expect = 9e-43
Identities = 76/136 (55%), Positives = 103/136 (75%)
Frame = +2
Query: 185 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 364
L++++ KYK+RDLTV E NV + K +D+YVF D S ++L+N TGTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNT 67
Query: 365 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 544
YNIPI W+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 545 IQVMIVVFGDEPPVFS 592
I+ MI F +E P++S
Sbjct: 128 IKEMIAKFQEELPMYS 143
>ref|NP_060784.3| ubiquitin-conjugating enzyme E2 variant 3 isoform b [Homo sapiens].
Length = 379
Score = 172 bits (435), Expect = 9e-43
Identities = 76/136 (55%), Positives = 103/136 (75%)
Frame = +2
Query: 185 LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 364
L++++ KYK+RDLTV E NV + K +D+YVF D S ++L+N TGTIPV Y+GNT
Sbjct: 8 LRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNT 67
Query: 365 YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 544
YNIPI W+LD++P+ PPICF+KPT++M I GKHVDA G+IYLPYL W HP+S ++GL
Sbjct: 68 YNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
Query: 545 IQVMIVVFGDEPPVFS 592
I+ MI F +E P++S
Sbjct: 128 IKEMIAKFQEELPMYS 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,830,227
Number of extensions: 1413845
Number of successful extensions: 8381
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8133
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,802,980
Effective search space: 5329072800
Effective search space used: 5329072800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012811
(1399 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 476 e-131
>Sscrofa_Chr02
|| Length = 162569375
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Minus
Query: 1010 gctgaggttgataaaaacatagaacttttgagaaagaaggatgaagaactcagttctgcc 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43761466 gctgaggttgataaaaacatagaacttttgagaaagaaggatgaagaactcagttctgcc 43761407
Query: 1070 ctggagaagatggaaaatcagtctgaaaacaatgatattgatgaagttatcattcccaca 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43761406 ctggagaagatggaaaatcagtctgaaaacaatgatattgatgaagttatcattcccaca 43761347
Query: 1130 gccccactatacaaacagatcctaaatctttatgcagaggaaaatgctattgaagacacg 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43761346 gccccactatacaaacagatcctaaatctttatgcagaggaaaatgctattgaagacacg 43761287
Query: 1190 atcttttacctgggagaagccctgaggcggggagtaatagacctagacgtcttcctgaag 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43761286 atcttttacctgggagaagccctgaggcggggagtaatagacctagacgtcttcctgaag 43761227
Score = 398 bits (201), Expect = e-108
Identities = 204/205 (99%)
Strand = Plus / Minus
Query: 806 ggtcccagtagagatggcacaatcagcgaggacaccatccgagcctctctcatctcggcg 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43762937 ggtcccagtagagatggcacaatcagcgaggacaccatccgagcctctctcatctcggcg 43762878
Query: 866 gtcagtgacaaattgagatggcggatgaaggaggagatggatcgtgcccaggcagagctt 925
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43762877 gtcagtgacaaattgagatggcggatgaaggaggagatggatcgtgcccaggcagagctc 43762818
Query: 926 aatgccttgaaacgcacagaggaagacctgaaaaagggtcaccagaaactggaagagatg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43762817 aatgccttgaaacgcacagaggaagacctgaaaaagggtcaccagaaactggaagagatg 43762758
Query: 986 gttacccgtttagatcaggaagtag 1010
|||||||||||||||||||||||||
Sbjct: 43762757 gttacccgtttagatcaggaagtag 43762733
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 355 aggtaatacgtataatattccaatatgcctgtggctgctggacacatacccatataatcc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43816803 aggtaatacgtataatattccaatatgcctgtggctgctggacacatacccatataatcc 43816862
Query: 415 ccctatctgttttgttaagcctactagttcaatgactattaaaacaggaaagcatgtgga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43816863 ccctatctgttttgttaagcctactagttcaatgactattaaaacaggaaagcatgtgga 43816922
Query: 475 tgctaatggaaagatatatcttccttatctacatgagtggaaacac 520
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43816923 tgctaatggaaagatatatcttccttatctacatgagtggaaacac 43816968
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 70 ctggctcctcggtgcgattgtgtggggcggcctggggcggccccggagcggctgaccctc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43801837 ctggctcctcggtgcgattgtgtggggcggcctggggcggccccggagcggctgaccctc 43801896
Query: 130 tgcctgcggggacgggagtcgcgaggcggcagccatggcggggtcggagagccagctcaa 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43801897 tgcctgcggggacgggagtcgcgaggcggcagccatggcggggtcggagagccagctcaa 43801956
Query: 190 gaaaatggtgtccaag 205
||||||||||||||||
Sbjct: 43801957 gaaaatggtgtccaag 43801972
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 521 ccacagtcagatttgttggggcttattcaggtcatgattgtggtgtttggagatgaacct 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43788778 ccacagtcagatttgttggggcttattcaggtcatgattgtggtgtttggagatgaacct 43788837
Query: 581 ccggtcttctctcgtcctactctttcagcatcctatccaccataccaggcaacagggcca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43788838 ccggtcttctctcgtcctactctttcagcatcctatccaccataccaggcaacagggcca 43788897
Query: 641 ccaaata 647
|||||||
Sbjct: 43788898 ccaaata 43788904
Score = 220 bits (111), Expect = 2e-54
Identities = 145/154 (94%), Gaps = 3/154 (1%)
Strand = Plus / Minus
Query: 1248 agcatgtacgtcttctgtcccgtaaacagttccagctgagggcactaatggcaaaagcaa 1307
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 43759857 agcatgtacgtcttctgtcccgtaaacagttccagctgagggcactaatgcaaaaagcaa 43759798
Query: 1308 gaaagactgccggtctcagtgacctctactgacttctcagataccagctggagattttag 1367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 43759797 gaaagactgccggtctcagtgacctctactgacttctcagataccagctggagatta-ag 43759739
Query: 1368 ctctc--taaagcattcattttctctcttccttt 1399
|||| |||||||||||||| |||||||||||
Sbjct: 43759738 ctcttcttaaagcattcatttcttctcttccttt 43759705
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 713 agtggttacccaggctgtccttacccacctggcggtcagtatcctgccacaacaagttcc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43780069 agtggttacccaggctgtccttacccacctggcggtcagtatcctgccacaacaagttcc 43780010
Query: 773 cagtacccttcacagcctcctgtaaccactgttggt 808
||||||||||||||||||||||||||||||||||||
Sbjct: 43780009 cagtacccttcacagcctcctgtaaccactgttggt 43779974
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 204 agtacaaatacagagacctaactgtacgtgaaactgtcaatgttattactttatacaaag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43809125 agtacaaatacagagacctaactgtacgtgaaactgtcaatgttattactttatacaaag 43809184
Query: 264 atctcaaacctgtattggattcatatg 290
|||||||||||||||||||||||||||
Sbjct: 43809185 atctcaaacctgtattggattcatatg 43809211
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 290 gtttttaatgatggcagttcaagggaactaatgaacctcactggaacaattcctgtgcct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43811863 gtttttaatgatggcagttcaagggaactaatgaacctcactggaacaattcctgtgcct 43811922
Query: 350 tatagaggtaa 360
|||||||||||
Sbjct: 43811923 tatagaggtaa 43811933
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 648 cttcctacatgccaggcatgccaagtgggatttcagcgtacccatccggataccctccca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43783691 cttcctacatgccaggcatgccaagtgggatttcagcgtacccatccggataccctccca 43783632
Query: 708 atcccag 714
|||||||
Sbjct: 43783631 atcccag 43783625
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,946,288
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 10
Length of query: 1399
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1378
Effective length of database: 2,808,413,156
Effective search space: 3869993328968
Effective search space used: 3869993328968
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)