Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012814
(1110 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029774.1| optineurin [Bos taurus]. 441 e-124
Alignment gi|NP_776779.1| NF-kappa-B essential modulator [Bos taurus]. 53 4e-07
Alignment gi|XP_001250182.2| PREDICTED: inhibitor of kappa light polypept... 50 3e-06
Alignment gi|XP_002707239.1| PREDICTED: inhibitor of kappa light polypept... 50 3e-06
>ref|NP_001029774.1| optineurin [Bos taurus].
Length = 573
Score = 441 bits (1134), Expect = e-124
Identities = 228/284 (80%), Positives = 241/284 (84%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEKGDSP+ETTGNGPP LAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKGDSPSETTGNGPPNLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FETQSKEAKERLTALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFETQSKEAKERLTALSLENEKLKQELGTLTGKTER 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
+FED+ GDP+VPKAE EQEVEQLKTQVARLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 AFEDIIGDPKVPKAEVEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLRKGNPE 946
IRMAEGEA A KEIK SPGP RTDS+DTSKSAEGTRNY+EFEELTVSQLL CLR+GN +
Sbjct: 181 IRMAEGEAAVAAKEIKPSPGPTRTDSVDTSKSAEGTRNYVEFEELTVSQLLHCLREGNQK 240
Query: 947 VERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRK 1078
VERLE+A +EA+ RI DFEKKA D SETET T E Q K+ K
Sbjct: 241 VERLEVALKEAKERISDFEKKAKDHSETETQTEEHTEQEKEEEK 284
>ref|NP_776779.1| NF-kappa-B essential modulator [Bos taurus].
Length = 419
Score = 53.1 bits (126), Expect = 4e-07
Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 8/263 (3%)
Frame = +2
Query: 239 PLSCLTEKGDSPT-------ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEA 397
PL + + SP E + G P + H + TP + + L EN +L++A
Sbjct: 9 PLCEMVQPSGSPAGDQDMLGEESSLGKPAMLHVPSEQGTP----ETFQRCLEENQELRDA 64
Query: 398 MKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXX 577
++ +NQ ++ R EEL + Q+EE+ F + +EA++ + LS
Sbjct: 65 IRQSNQMLRERCEELQHFQGNQREEKAFLMQKFQEARDLVVRLSLEKR------------ 112
Query: 578 XXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDS 757
+ R + +A +EVE+LKT ++ +KA + V+ L
Sbjct: 113 ----------ELRQQREQALKEVERLKTCQQQMAEDKASVKAQVTSL------------- 149
Query: 758 FVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLE-FEELTVSQLLLCLRK 934
E++ ++ +AA KE + R S + ++ E R LE + V QL+L
Sbjct: 150 LGELQESQSRLEAATKERQALESRARVAS-EKARQLESEREALEQRHSVQVDQLVLQNES 208
Query: 935 GNPEVERLEIAPQEAQRRILDFE 1003
+ A E +R++ +
Sbjct: 209 MEAALRMERQAASEEKRKLAQLQ 231
>ref|XP_001250182.2| PREDICTED: inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform 1 [Bos taurus].
Length = 173
Score = 50.4 bits (119), Expect = 3e-06
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Frame = +2
Query: 239 PLSCLTEKGDSPT-------ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEA 397
PL + + SP E + G P + H + TP + + L EN +L++A
Sbjct: 9 PLCEMVQPSGSPAGDQDMLGEESSLGKPAMLHVPSEQGTP----ETFQRCLEENQELRDA 64
Query: 398 MKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXX 577
++ +NQ ++ R EEL + Q+EE+ F + +EA++ + LS
Sbjct: 65 IRQSNQMLRERCEELQHFQGNQREEKAFLMQKFQEARDLVVRLSLEKR------------ 112
Query: 578 XXRSFEDLTGDPRVPKAEAEQEVEQLKT-------QVARLQAEKADLLGIVSELQLKLNS 736
+ R + +A +EVE+LKT A ++A+ LLG + E Q +L +
Sbjct: 113 ----------ELRQQREQALKEVERLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEA 162
>ref|XP_002707239.1| PREDICTED: inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma [Bos taurus].
Length = 208
Score = 50.4 bits (119), Expect = 3e-06
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Frame = +2
Query: 239 PLSCLTEKGDSPT-------ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEA 397
PL + + SP E + G P + H + TP + + L EN +L++A
Sbjct: 44 PLCEMVQPSGSPAGDQDMLGEESSLGKPAMLHVPSEQGTP----ETFQRCLEENQELRDA 99
Query: 398 MKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXX 577
++ +NQ ++ R EEL + Q+EE+ F + +EA++ + LS
Sbjct: 100 IRQSNQMLRERCEELQHFQGNQREEKAFLMQKFQEARDLVVRLSLEKR------------ 147
Query: 578 XXRSFEDLTGDPRVPKAEAEQEVEQLKT-------QVARLQAEKADLLGIVSELQLKLNS 736
+ R + +A +EVE+LKT A ++A+ LLG + E Q +L +
Sbjct: 148 ----------ELRQQREQALKEVERLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEA 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,818,767
Number of extensions: 1132681
Number of successful extensions: 6192
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6053
Number of HSP's successfully gapped: 4
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012814
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012814
(1110 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535187.2| PREDICTED: similar to optineurin isoform 1 [Can... 404 e-113
Alignment gi|XP_857661.1| PREDICTED: similar to optineurin isoform 7 [Can... 397 e-111
Alignment gi|XP_857507.1| PREDICTED: similar to optineurin isoform 3 [Can... 397 e-111
Alignment gi|XP_857624.1| PREDICTED: similar to optineurin isoform 6 [Can... 394 e-110
Alignment gi|XP_857586.1| PREDICTED: similar to optineurin isoform 5 [Can... 391 e-109
Alignment gi|XP_857546.1| PREDICTED: similar to optineurin isoform 4 [Can... 328 4e-90
>ref|XP_535187.2| PREDICTED: similar to optineurin isoform 1 [Canis familiaris].
Length = 573
Score = 404 bits (1038), Expect = e-113
Identities = 210/286 (73%), Positives = 230/286 (80%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLRKGNPE 946
IR+AEGEAD A++EI+TSPGP RTDS+DT+KS EG RNYLEFE+LTVSQLLLCLR+ N +
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSVDTNKSTEGARNYLEFEKLTVSQLLLCLREENQK 240
Query: 947 VERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
VERL+ A +EA+ R+L FEKKA SE ET T E + K+ K P
Sbjct: 241 VERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGP 286
>ref|XP_857661.1| PREDICTED: similar to optineurin isoform 7 [Canis familiaris].
Length = 579
Score = 397 bits (1021), Expect = e-111
Identities = 210/292 (71%), Positives = 230/292 (78%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 928
IR+AEGEAD A++EI+TSPGP RTDS+DT +KS EG RNYLEFE+LTVSQLLLCL
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSVDTLLTHPMNKSTEGARNYLEFEKLTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+ N +VERL+ A +EA+ R+L FEKKA SE ET T E + K+ K P
Sbjct: 241 REENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGP 292
>ref|XP_857507.1| PREDICTED: similar to optineurin isoform 3 [Canis familiaris].
Length = 579
Score = 397 bits (1021), Expect = e-111
Identities = 210/292 (71%), Positives = 230/292 (78%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 928
IR+AEGEAD A++EI+TSPGP RTDS+DT +KS EG RNYLEFE+LTVSQLLLCL
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSVDTRCHEHRNKSTEGARNYLEFEKLTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+ N +VERL+ A +EA+ R+L FEKKA SE ET T E + K+ K P
Sbjct: 241 REENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGP 292
>ref|XP_857624.1| PREDICTED: similar to optineurin isoform 6 [Canis familiaris].
Length = 591
Score = 394 bits (1012), Expect = e-110
Identities = 210/303 (69%), Positives = 230/303 (75%), Gaps = 17/303 (5%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 587 S-----------------FEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSE 715
F+D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSE
Sbjct: 121 PRIDVMARCEFDSLSFCHFQDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSE 180
Query: 716 LQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE 895
LQLKLNSGGPSEDSFVEIR+AEGEAD A++EI+TSPGP RTDS+DT+KS EG RNYLEFE
Sbjct: 181 LQLKLNSGGPSEDSFVEIRIAEGEADVAVREIRTSPGPTRTDSVDTNKSTEGARNYLEFE 240
Query: 896 ELTVSQLLLCLRKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRR 1075
+LTVSQLLLCLR+ N +VERL+ A +EA+ R+L FEKKA SE ET T E + K+
Sbjct: 241 KLTVSQLLLCLREENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEE 300
Query: 1076 KAP 1084
K P
Sbjct: 301 KGP 303
>ref|XP_857586.1| PREDICTED: similar to optineurin isoform 5 [Canis familiaris].
Length = 529
Score = 391 bits (1005), Expect = e-109
Identities = 209/292 (71%), Positives = 229/292 (78%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDS-----ID-TSKSAEGTRNYLEFEELTVSQLLLCL 928
IR+AEGEAD A++EI+TSPGP RTDS +D +KS EG RNYLEFE+LTVSQLLLCL
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSAARLLVDFVNKSTEGARNYLEFEKLTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+ N +VERL+ A +EA+ R+L FEKKA SE ET T E + K+ K P
Sbjct: 241 REENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGP 292
>ref|XP_857546.1| PREDICTED: similar to optineurin isoform 4 [Canis familiaris].
Length = 546
Score = 328 bits (842), Expect = 4e-90
Identities = 177/286 (61%), Positives = 199/286 (69%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S +D GD + PKAEA+QEVEQLKTQV E+S
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQV---------------------------EESLSF 153
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLRKGNPE 946
+ + EGEAD A++EI+TSPGP RTDS+DT+KS EG RNYLEFE+LTVSQLLLCLR+ N +
Sbjct: 154 LPLQEGEADVAVREIRTSPGPTRTDSVDTNKSTEGARNYLEFEKLTVSQLLLCLREENQK 213
Query: 947 VERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
VERL+ A +EA+ R+L FEKKA SE ET T E + K+ K P
Sbjct: 214 VERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGP 259
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,755,293
Number of extensions: 1179123
Number of successful extensions: 6499
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6361
Number of HSP's successfully gapped: 6
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012814
(1110 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999126.1| optineurin [Sus scrofa]. 483 e-137
Alignment gi|XP_003360566.1| PREDICTED: NF-kappa-B essential modulator-li... 51 1e-06
Alignment gi|XP_003360565.1| PREDICTED: NF-kappa-B essential modulator-li... 51 1e-06
Alignment gi|NP_001106524.1| NF-kappa-B essential modulator [Sus scrofa]. 51 1e-06
Alignment gi|XP_003360567.1| PREDICTED: NF-kappa-B essential modulator-li... 49 7e-06
>ref|NP_999126.1| optineurin [Sus scrofa].
Length = 574
Score = 483 bits (1244), Expect = e-137
Identities = 251/286 (87%), Positives = 257/286 (89%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSLENEKLKQELGKLKGKTER 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLRKGNPE 946
IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLR+GN +
Sbjct: 181 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK 240
Query: 947 VERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
VERLEIA +EA+ RILDFEKKA DRSETET T E K Q K+ K+P
Sbjct: 241 VERLEIALKEAKERILDFEKKAKDRSETETQTEEHKEQEKEEEKSP 286
>ref|XP_003360566.1| PREDICTED: NF-kappa-B essential modulator-like isoform 2 [Sus
scrofa].
Length = 411
Score = 51.2 bits (121), Expect = 1e-06
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 14/227 (6%)
Frame = +2
Query: 278 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 457
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 458 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 637
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 638 QEVEQLKT------QVARLQAEKADLLGIVSELQLKLNSGGPSEDSF--------VEIRM 775
QEVE LKT A ++A+ LLG + E Q +L + + ++R
Sbjct: 123 QEVELLKTCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRVRATSEQVRQ 182
Query: 776 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQL 916
E E +A ++ +R S + R E+ ++QL
Sbjct: 183 LENEREALQQQHSVQVDQLRLQSQSMEAALRMERQAASEEKRKLAQL 229
>ref|XP_003360565.1| PREDICTED: NF-kappa-B essential modulator-like isoform 1 [Sus
scrofa].
Length = 419
Score = 50.8 bits (120), Expect = 1e-06
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 15/228 (6%)
Frame = +2
Query: 278 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 457
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 458 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 637
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 638 QEVEQLKT-------QVARLQAEKADLLGIVSELQLKLNSGGPSEDSF--------VEIR 772
QEVE LKT A ++A+ LLG + E Q +L + + ++R
Sbjct: 123 QEVELLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRVRATSEQVR 182
Query: 773 MAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQL 916
E E +A ++ +R S + R E+ ++QL
Sbjct: 183 QLENEREALQQQHSVQVDQLRLQSQSMEAALRMERQAASEEKRKLAQL 230
>ref|NP_001106524.1| NF-kappa-B essential modulator [Sus scrofa].
Length = 419
Score = 50.8 bits (120), Expect = 1e-06
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 15/228 (6%)
Frame = +2
Query: 278 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 457
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 458 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 637
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 638 QEVEQLKT-------QVARLQAEKADLLGIVSELQLKLNSGGPSEDSF--------VEIR 772
QEVE LKT A ++A+ LLG + E Q +L + + ++R
Sbjct: 123 QEVELLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRVRATSEQVR 182
Query: 773 MAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQL 916
E E +A ++ +R S + R E+ ++QL
Sbjct: 183 QLENEREALQQQHSVQVDQLRLQSQSMEAALRMERQAASEEKRKLAQL 230
>ref|XP_003360567.1| PREDICTED: NF-kappa-B essential modulator-like isoform 3 [Sus
scrofa].
Length = 320
Score = 48.5 bits (114), Expect = 7e-06
Identities = 68/269 (25%), Positives = 106/269 (39%), Gaps = 19/269 (7%)
Frame = +2
Query: 278 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 457
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 458 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 637
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 638 QEVEQLKT-------QVARLQAEKADLLGIVSELQLKLNSGGPSEDSF----------VE 766
QEVE LKT A ++A+ LLG + E Q +L + + V
Sbjct: 123 QEVELLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRRKLAQLQVA 182
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTD--SIDTSKSAEGTRNYLEFEELTVSQLLLCLRKGN 940
E D +K S R D D + E +EL QL R
Sbjct: 183 YHQLFQEYDNHIKSSVVSSERNRADIYKADFQAERQAREQLAERKELLQEQLEQLQR--- 239
Query: 941 PEVERLEIAPQEAQRRILDFEKKAXDRSE 1027
E RL+ + QE+ RI D K+ + S+
Sbjct: 240 -EYSRLKTSCQES-ARIEDMRKRHVEVSQ 266
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,746,157
Number of extensions: 734770
Number of successful extensions: 3891
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3816
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012814
(1110 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_862896.1| optineurin [Mus musculus]. 357 1e-98
Alignment gi|NP_001154895.1| NF-kappa-B essential modulator isoform 1 [Mu... 54 3e-07
Alignment gi|NP_001154894.1| NF-kappa-B essential modulator isoform 5 [Mu... 54 3e-07
Alignment gi|NP_001129539.1| NF-kappa-B essential modulator isoform 3 [Mu... 54 3e-07
Alignment gi|NP_034677.2| NF-kappa-B essential modulator isoform 1 [Mus m... 54 3e-07
Alignment gi|NP_001154896.1| NF-kappa-B essential modulator isoform 2 [Mu... 53 5e-07
Alignment gi|NP_001154893.1| NF-kappa-B essential modulator isoform 4 [Mu... 53 5e-07
Alignment gi|NP_848705.1| NF-kappa-B essential modulator isoform 2 [Mus m... 53 5e-07
>ref|NP_862896.1| optineurin [Mus musculus].
Length = 584
Score = 357 bits (915), Expect = 1e-98
Identities = 191/291 (65%), Positives = 211/291 (72%), Gaps = 10/291 (3%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEKGDSP ET GNGP + HP+LDTFTP ELLQQM+ELL+ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKGDSPCETPGNGPSNMVHPSLDTFTPEELLQQMKELLVENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEERL FE QSKE KERL AL+ +
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLLFEMQSKEVKERLKALTHENERLKEELGKFKEKSEK 120
Query: 587 SFEDLTGDPRVPKA----------EAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNS 736
EDLTG R P+A + EQEVE LK QV RL+AEKADLLGIVSELQLKLNS
Sbjct: 121 PLEDLTGGYRYPRALEEEVEKLKTQVEQEVEHLKIQVMRLRAEKADLLGIVSELQLKLNS 180
Query: 737 GGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQL 916
GG SEDSFVEIRM EGE + AMKE+K P P RTD I S E R+ EFEELTVSQL
Sbjct: 181 GGSSEDSFVEIRMTEGETEGAMKEMKNCPTPTRTDPISLSNCTEDARSCAEFEELTVSQL 240
Query: 917 LLCLRKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKK 1069
LLCLR+GN +VERLE+A +EA+ RI DFEKKA S TE T ++ K+
Sbjct: 241 LLCLREGNQKVERLEVALREAKERISDFEKKANGHSSTEKQTARRADREKE 291
>ref|NP_001154895.1| NF-kappa-B essential modulator isoform 1 [Mus musculus].
Length = 412
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 4/257 (1%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 596 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 775
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 111 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 155
Query: 776 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLRKGNPEVE 952
++ +AA K+ + G IR S + + E R L+ + + V Q LR N VE
Sbjct: 156 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSVE 210
Query: 953 ---RLEIAPQEAQRRIL 994
R+E ++R L
Sbjct: 211 AALRMERQAASEEKRKL 227
>ref|NP_001154894.1| NF-kappa-B essential modulator isoform 5 [Mus musculus].
Length = 424
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 4/257 (1%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 27 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 82
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 83 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 122
Query: 596 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 775
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 123 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 167
Query: 776 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLRKGNPEVE 952
++ +AA K+ + G IR S + + E R L+ + + V Q LR N VE
Sbjct: 168 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSVE 222
Query: 953 ---RLEIAPQEAQRRIL 994
R+E ++R L
Sbjct: 223 AALRMERQAASEEKRKL 239
>ref|NP_001129539.1| NF-kappa-B essential modulator isoform 3 [Mus musculus].
Length = 430
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 4/257 (1%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 33 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 88
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 89 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 128
Query: 596 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 775
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 129 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 173
Query: 776 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLRKGNPEVE 952
++ +AA K+ + G IR S + + E R L+ + + V Q LR N VE
Sbjct: 174 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSVE 228
Query: 953 ---RLEIAPQEAQRRIL 994
R+E ++R L
Sbjct: 229 AALRMERQAASEEKRKL 245
>ref|NP_034677.2| NF-kappa-B essential modulator isoform 1 [Mus musculus].
Length = 412
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 4/257 (1%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 596 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 775
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 111 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 155
Query: 776 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLRKGNPEVE 952
++ +AA K+ + G IR S + + E R L+ + + V Q LR N VE
Sbjct: 156 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSVE 210
Query: 953 ---RLEIAPQEAQRRIL 994
R+E ++R L
Sbjct: 211 AALRMERQAASEEKRKL 227
>ref|NP_001154896.1| NF-kappa-B essential modulator isoform 2 [Mus musculus].
Length = 411
Score = 52.8 bits (125), Expect = 5e-07
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 14/241 (5%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 596 DLTGDPRVPKAEAEQEVEQLK------TQVARLQAEKADLLGIVSELQLKLNSGGPSEDS 757
L D R + +A +E+EQLK A ++A+ LLG + E Q +L + +
Sbjct: 111 KL--DLRSQREQALKELEQLKKCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQA 168
Query: 758 F--------VEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQ 913
++R E E + ++ +R + + R E+ ++Q
Sbjct: 169 LEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQ 228
Query: 914 L 916
L
Sbjct: 229 L 229
>ref|NP_001154893.1| NF-kappa-B essential modulator isoform 4 [Mus musculus].
Length = 429
Score = 52.8 bits (125), Expect = 5e-07
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 14/241 (5%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 33 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 88
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 89 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 128
Query: 596 DLTGDPRVPKAEAEQEVEQLK------TQVARLQAEKADLLGIVSELQLKLNSGGPSEDS 757
L D R + +A +E+EQLK A ++A+ LLG + E Q +L + +
Sbjct: 129 KL--DLRSQREQALKELEQLKKCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQA 186
Query: 758 F--------VEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQ 913
++R E E + ++ +R + + R E+ ++Q
Sbjct: 187 LEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQ 246
Query: 914 L 916
L
Sbjct: 247 L 247
>ref|NP_848705.1| NF-kappa-B essential modulator isoform 2 [Mus musculus].
Length = 411
Score = 52.8 bits (125), Expect = 5e-07
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 14/241 (5%)
Frame = +2
Query: 236 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 415
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 416 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 595
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 596 DLTGDPRVPKAEAEQEVEQLK------TQVARLQAEKADLLGIVSELQLKLNSGGPSEDS 757
L D R + +A +E+EQLK A ++A+ LLG + E Q +L + +
Sbjct: 111 KL--DLRSQREQALKELEQLKKCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQA 168
Query: 758 F--------VEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQ 913
++R E E + ++ +R + + R E+ ++Q
Sbjct: 169 LEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQ 228
Query: 914 L 916
L
Sbjct: 229 L 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,165,445
Number of extensions: 934786
Number of successful extensions: 4546
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4450
Number of HSP's successfully gapped: 8
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012814
(1110 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008214.1| optineurin [Homo sapiens]. 383 e-106
Alignment gi|NP_001008213.1| optineurin [Homo sapiens]. 383 e-106
Alignment gi|NP_068815.2| optineurin [Homo sapiens]. 383 e-106
Alignment gi|NP_001008212.1| optineurin [Homo sapiens]. 383 e-106
>ref|NP_001008214.1| optineurin [Homo sapiens].
Length = 577
Score = 383 bits (984), Expect = e-106
Identities = 204/292 (69%), Positives = 225/292 (77%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 928
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+GN +VERLE+A +EA+ R+ DFEKK +RSE ET T + K P
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGP 292
>ref|NP_001008213.1| optineurin [Homo sapiens].
Length = 577
Score = 383 bits (984), Expect = e-106
Identities = 204/292 (69%), Positives = 225/292 (77%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 928
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+GN +VERLE+A +EA+ R+ DFEKK +RSE ET T + K P
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGP 292
>ref|NP_068815.2| optineurin [Homo sapiens].
Length = 577
Score = 383 bits (984), Expect = e-106
Identities = 204/292 (69%), Positives = 225/292 (77%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 928
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+GN +VERLE+A +EA+ R+ DFEKK +RSE ET T + K P
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGP 292
>ref|NP_001008212.1| optineurin [Homo sapiens].
Length = 577
Score = 383 bits (984), Expect = e-106
Identities = 204/292 (69%), Positives = 225/292 (77%), Gaps = 6/292 (2%)
Frame = +2
Query: 227 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 406
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 407 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 586
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 587 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 766
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 767 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 928
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 929 RKGNPEVERLEIAPQEAQRRILDFEKKAXDRSETETXTXEPKNQRKKRRKAP 1084
R+GN +VERLE+A +EA+ R+ DFEKK +RSE ET T + K P
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGP 292
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,706,121
Number of extensions: 1141665
Number of successful extensions: 5991
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5838
Number of HSP's successfully gapped: 4
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012814
(1110 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 420 e-115
>Sscrofa_Chr10
|| Length = 79102373
Score = 420 bits (212), Expect = e-115
Identities = 215/216 (99%)
Strand = Plus / Minus
Query: 1 ttcccccgcggaggtggggaggccagcgggactgtcagctgagcaccgctgggcggggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77740523 ttcccccgcggaggtggggaggccagcgggactgtcagctgagcaccgctgggcggggtc 77740464
Query: 61 gcgagggcgcacgtcagccccgggcttccgagcccccgccaccgcccccggccggtgccc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 77740463 gcgagggcgcacgtcagccccaggcttccgagcccccgccaccgcccccggccggtgccc 77740404
Query: 121 tggtcagcgtctgcatccgggtccggagccctttcccagccggcaagatgccgaggaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77740403 tggtcagcgtctgcatccgggtccggagccctttcccagccggcaagatgccgaggaagc 77740344
Query: 181 agtgaccccgagggaggttggatcccgagcgccggg 216
||||||||||||||||||||||||||||||||||||
Sbjct: 77740343 agtgaccccgagggaggttggatcccgagcgccggg 77740308
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 594 aggacctcactggggaccccagggtccccaaggcggaagcagaacaggaagtagaacagc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77726109 aggacctcactggggaccccagggtccccaaggcggaagcagaacaggaagtagaacagc 77726050
Query: 654 tgaagacccaggtggcacgccttcaagctgaaaaggcggatctgctgggcatcgtgtctg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77726049 tgaagacccaggtggcacgccttcaagctgaaaaggcggatctgctgggcatcgtgtctg 77725990
Query: 714 aattgcagctcaagctgaactcaggtggcccctctgaagactcctttgttgaaatcagga 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77725989 aattgcagctcaagctgaactcaggtggcccctctgaagactcctttgttgaaatcagga 77725930
Query: 774 tggctg 779
||||||
Sbjct: 77725929 tggctg 77725924
Score = 345 bits (174), Expect = 3e-92
Identities = 177/178 (99%)
Strand = Plus / Minus
Query: 215 ggaactgctgccatgtcccaccaaccacttagctgcctgactgagaagggggacagcccc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77731544 ggaactgctgccatgtcccaccaaccacttagctgcctgactgagaagggggacagcccc 77731485
Query: 275 accgaaaccacaggaaatggaccccccactctggctcacccaaaccttgacacgttcacc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77731484 accgaaaccacaggaaatggaccccccactctggctcacccaaaccttgacacgttcacc 77731425
Query: 335 ccacatgaactgctgcaacagatgagagagcttctaatcgagaaccatcagctgaaag 392
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 77731424 ccacatgaactgctgcagcagatgagagagcttctaatcgagaaccatcagctgaaag 77731367
Score = 224 bits (113), Expect = 8e-56
Identities = 132/141 (93%)
Strand = Plus / Minus
Query: 391 agaagccatgaagctaaataatcaagctatgaaagggcgatttgaggagctctcagcctg 450
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 77730197 agaagccatgaagctaaataatcaagctatgaaagggcgatttgaggagctttcagcctg 77730138
Query: 451 gacagagaagcagaaggaagaacgccnnnnnnnngagacccagagcaaagaagccaaaga 510
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 77730137 gacagagaagcagaaggaagaacgccttttttttgagacccagagcaaagaagccaaaga 77730078
Query: 511 gcgcctaacggctctgagtct 531
|||||||||||||||||||||
Sbjct: 77730077 gcgcctaacggctctgagtct 77730057
Score = 190 bits (96), Expect = 1e-45
Identities = 111/116 (95%)
Strand = Plus / Minus
Query: 853 gagcaaatctgcagaaggtaccaggaattatttggaatttgaggaattaactgtgagcca 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77720129 gagcaaatctgcagaaggtaccaggaattatttggaatttgaggaattaactgtgagcca 77720070
Query: 913 gctcctgctgtgtctaaggaaaggaaacccagaggtggaaagacttgaaatcgccc 968
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct: 77720069 gctcctgctgtgtctaagggaaggaaaccagaaggtggagagacttgaaatcgccc 77720014
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 779 gagggagaagcagatgcagcaatgaaggaaatcaagacaagtcctgggcccataagaact 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77724147 gagggagaagcagatgcagcaatgaaggaaatcaagacaagtcctgggcccataagaact 77724088
Query: 839 gattccattgacacg 853
|||||||||||||||
Sbjct: 77724087 gattccattgacacg 77724073
Score = 131 bits (66), Expect = 9e-28
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 986 agaattttagattttgaaaagaaagccnaggatcgttctgagactgagacccngacnnga 1045
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct: 77710927 agaattttagattttgaaaagaaagccaaggatcgttctgagactgagacccagacagaa 77710868
Query: 1046 gagc-ccaagaaccagagaaagaagaggagaaaagccc 1082
|||| | |||||| ||||||||||||||||||||||||
Sbjct: 77710867 gagcacaaagaacaagagaaagaagaggagaaaagccc 77710830
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,840,714
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 8
Length of query: 1110
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1089
Effective length of database: 2,808,413,156
Effective search space: 3058361926884
Effective search space used: 3058361926884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)