Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012815
(1986 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029774.1| optineurin [Bos taurus]. 905 0.0
Alignment gi|NP_776779.1| NF-kappa-B essential modulator [Bos taurus]. 120 4e-30
Alignment gi|XP_002695172.1| PREDICTED: myosin, heavy polypeptide 14-like... 67 4e-11
Alignment gi|XP_887804.4| PREDICTED: myosin, heavy chain 14 isoform 4 [Bo... 67 4e-11
Alignment gi|XP_002693047.1| PREDICTED: hypothetical protein [Bos taurus]. 66 1e-10
Alignment gi|XP_001790689.1| PREDICTED: hypothetical protein [Bos taurus]. 66 1e-10
Alignment gi|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus]. 64 4e-10
Alignment gi|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus]. 64 4e-10
Alignment gi|XP_002690549.1| PREDICTED: myosin, heavy polypeptide 6, card... 64 5e-10
Alignment gi|XP_002700601.1| PREDICTED: myosin, heavy polypeptide 6, card... 64 5e-10
>ref|NP_001029774.1| optineurin [Bos taurus].
Length = 573
Score = 905 bits (2339), Expect(2) = 0.0
Identities = 474/553 (85%), Positives = 495/553 (89%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEKGDSP+ETTGNGPP LAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKGDSPSETTGNGPPNLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FETQSKEAKERLTALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFETQSKEAKERLTALSLENEKLKQELGTLTGKTER 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
+FED+ GDP+VPKAE EQEVEQLKTQVARLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 AFEDIIGDPKVPKAEVEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK 856
IRMAEGEA A KEIK SPGP RTDS+DTSKSAEGTRNY+EFEELTVSQLL CLREGNQK
Sbjct: 181 IRMAEGEAAVAAKEIKPSPGPTRTDSVDTSKSAEGTRNYVEFEELTVSQLLHCLREGNQK 240
Query: 857 VERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQV 1036
VERLE+ALKEAKERI DFEKKAKD S +T+GSEVE LNLQV
Sbjct: 241 VERLEVALKEAKERISDFEKKAKDHSETETQTEEHTEQEKEEEKDTKTIGSEVETLNLQV 300
Query: 1037 TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVE 1216
TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSA+PSELNEKQEL+Y NKKLELQVE
Sbjct: 301 TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSASPSELNEKQELVYKNKKLELQVE 360
Query: 1217 SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL 1396
SMRSEIKMEQAKTE+EKS+L TLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL
Sbjct: 361 SMRSEIKMEQAKTEDEKSRLGTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL 420
Query: 1397 NGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH 1576
+GKLE+AEKALASKQLQMD MKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH
Sbjct: 421 SGKLELAEKALASKQLQMDGMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH 480
Query: 1577 EEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAEDRNWL 1756
EEKEQLALQLAVLLK++NAFE+G SRQ+LMEMQSRHGARASDADQQA+LV RGAEDRNWL
Sbjct: 481 EEKEQLALQLAVLLKENNAFEDGGSRQTLMEMQSRHGARASDADQQAYLVQRGAEDRNWL 540
Query: 1757 QQQQQNIPIHSCP 1795
QQQQNIPIHSCP
Sbjct: 541 -QQQQNIPIHSCP 552
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTLLIHVTDCII
Sbjct: 552 PKCGEVLPDIDTLLIHVTDCII 573
>ref|NP_776779.1| NF-kappa-B essential modulator [Bos taurus].
Length = 419
Score = 120 bits (300), Expect(2) = 4e-30
Identities = 76/220 (34%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + + K SE +Q +L L
Sbjct: 145 QVTSLLGELQESQSRLEAATKERQALESRARVASEKARQLESEREALEQRHSVQVDQLVL 204
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q ESM + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE+ + L
Sbjct: 205 QNESMEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHMKS----SMVSSERNRGLQL 260
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 261 EDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQARE 320
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ + + + +E M+ RH
Sbjct: 321 KLAEKKEFLQEQLEQLQREYSRLKTSCQESARIEDMRKRH 360
Score = 31.6 bits (70), Expect(2) = 4e-30
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PDIDTL IHV +CI
Sbjct: 398 PKCQYQAPDIDTLQIHVMECI 418
Score = 60.1 bits (144), Expect = 7e-09
Identities = 94/414 (22%), Positives = 169/414 (40%), Gaps = 8/414 (1%)
Frame = +2
Query: 149 PLSCLTEKGDSPT-------ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEA 307
PL + + SP E + G P + H + TP + + L EN +L++A
Sbjct: 9 PLCEMVQPSGSPAGDQDMLGEESSLGKPAMLHVPSEQGTP----ETFQRCLEENQELRDA 64
Query: 308 MKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXX 487
++ +NQ ++ R EEL + Q+EE+ F + +EA++ + LS
Sbjct: 65 IRQSNQMLRERCEELQHFQGNQREEKAFLMQKFQEARDLVVRLSLEKR------------ 112
Query: 488 XXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDS 667
+ R + +A +EVE+LKT ++ +KA + V+ L
Sbjct: 113 ----------ELRQQREQALKEVERLKTCQQQMAEDKASVKAQVTSL------------- 149
Query: 668 FVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLE-FEELTVSQLLLCLRE 844
E++ ++ +AA KE + R S + ++ E R LE + V QL+L
Sbjct: 150 LGELQESQSRLEAATKERQALESRARVAS-EKARQLESEREALEQRHSVQVDQLVL---- 204
Query: 845 GNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEML 1024
+ E +E AL+ ER E+K R ++ S
Sbjct: 205 ---QNESMEAALR--MERQAASEEK---RKLAQLQVAYHQLFQEYDNHMKSSMVSSERNR 256
Query: 1025 NLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLE 1204
LQ+ L ++LQ+A L + + +L+E+ + + P + + Q +Y K +
Sbjct: 257 GLQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVP--VLKAQADIY---KAD 311
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
Q E E E K E + +L LQ ++RL + + IE++++R E
Sbjct: 312 FQAERQAREKLAE--KKEFLQEQLEQLQREYSRLKTSCQESAR-IEDMRKRHVE 362
>ref|XP_002695172.1| PREDICTED: myosin, heavy polypeptide 14-like [Bos taurus].
Length = 2006
Score = 67.4 bits (163), Expect = 4e-11
Identities = 102/485 (21%), Positives = 192/485 (39%), Gaps = 15/485 (3%)
Frame = +2
Query: 251 ELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLT 430
EL + R L +E +L+E M Q R EEL A +++EE + A R
Sbjct: 1077 ELEKLKRRLDVEGSELQEQMAEQQQ----RAEELRAQLGRKEEEL-------QAALARAE 1125
Query: 431 ALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLL 610
+ EDL + R +A+AE++ L ++ L+ E D L
Sbjct: 1126 EEGGVRAQLLKSLREAQAGLAEAQEDLEAE-RAARAKAEKQRRDLGEELEALRGELEDTL 1184
Query: 611 GIVSELQLKLNSGGPSEDSFVEIRMAEGEA----DAAMKEIKTSPGPIRTDSIDTSKSAE 778
+ Q +L S E E++ A E + A++E++ G + + + A
Sbjct: 1185 DSTNAQQ-ELRS--KREQEVTELKKALEEETRIHEVAVQELRQRHGQALGELAEQLEQAR 1241
Query: 779 GTRNYLEFEELTV-----------SQLLLCLREGNQKVERLEIALKEAKERILDFEKKAK 925
++ E LT+ S L +EG Q+ RLE L+E + R+ D E+
Sbjct: 1242 RSKGTWEKTRLTLEAEVSELRTELSNLQTARQEGEQRRRRLESQLQEVQGRVGDGERARA 1301
Query: 926 DRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKR 1105
+ + E S+ L+ ++T++ +L +A L E K
Sbjct: 1302 EAAEKLQRAQAELENVSGALSEAE---SKAIRLSKELTSMEAQLHDAQELLQEETRAKLA 1358
Query: 1106 LQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEEKSKLTTL 1285
L + +ALE + + +L+E+ ++ ++++ ++++ + + EEE L
Sbjct: 1359 LGSRARALEAEAAGLREQLDEEAAA---RERAGRELQTAQAQLSEWRRRQEEEAGALEAG 1415
Query: 1286 QLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQ 1465
+ R A + E L +R +EK + V++ L ++ L + +++ +Q
Sbjct: 1416 EEARRR-------AAREAEALNQRLAEKAE--VVERLERGRRRLQQELDDATVDLEQQRQ 1466
Query: 1466 TIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEEG 1645
++ EK L A+ + ER E E+E L L L+++ E
Sbjct: 1467 LVSALEKKQRKFDQLLAEEKAAVLRAVEERERAEAEGREREARTLSLTRALEEEQEAREE 1526
Query: 1646 ASRQS 1660
RQ+
Sbjct: 1527 LERQN 1531
Score = 54.7 bits (130), Expect = 3e-07
Identities = 81/400 (20%), Positives = 164/400 (41%), Gaps = 8/400 (2%)
Frame = +2
Query: 539 EAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKE 718
++ +EV +L+ +VA+L+ E+A L +L+ + +E++ + + E + + E
Sbjct: 895 QSAREVGELQGRVAQLEEERARL---AEQLRAEAELCAEAEETRGRLAARKQELELVVSE 951
Query: 719 IKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQKVERLEIALKEAKER 898
++ G + + S+ + + L+ + + + L EG ++ +LE EAK +
Sbjct: 952 LEARVG----EEEECSRQLQTEKKRLQ-QHIQELETHLEAEEGARQKLQLEKVTTEAKLK 1006
Query: 899 ILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKL 1078
L G ++ +L Q L KE + +L
Sbjct: 1007 KL---------------------------------GEDLLLLEDQNAKLSKERKLLEERL 1033
Query: 1079 SEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKME----Q 1246
SE +EK ++L + + + + ++ L +K ++E ++ + +E Q
Sbjct: 1034 SEFSSQAAEEEEKVKSLNKLRLKYEATIADMEDRLRKEEKSRQELEKLKRRLDVEGSELQ 1093
Query: 1247 AKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQELNGKLEMAEKA 1426
+ E++ + L+ R +E AL EE + V +L L A+
Sbjct: 1094 EQMAEQQQRAEELRAQLGRKEEELQAALARAEE---------EGGVRAQLLKSLREAQAG 1144
Query: 1427 LASKQLQMDEMKQTIAKQEK---DL-ETMAVLRAQMEVYCSDFHAERAAREKIHEEKEQL 1594
LA Q ++ + AK EK DL E + LR ++E +A++ R K +EQ
Sbjct: 1145 LAEAQEDLEAERAARAKAEKQRRDLGEELEALRGELEDTLDSTNAQQELRSK----REQE 1200
Query: 1595 ALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQ 1714
+L L+++ E A + E++ RHG + +Q
Sbjct: 1201 VTELKKALEEETRIHEVA----VQELRQRHGQALGELAEQ 1236
>ref|XP_887804.4| PREDICTED: myosin, heavy chain 14 isoform 4 [Bos taurus].
Length = 2006
Score = 67.4 bits (163), Expect = 4e-11
Identities = 102/485 (21%), Positives = 192/485 (39%), Gaps = 15/485 (3%)
Frame = +2
Query: 251 ELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLT 430
EL + R L +E +L+E M Q R EEL A +++EE + A R
Sbjct: 1077 ELEKLKRRLDVEGSELQEQMAEQQQ----RAEELRAQLGRKEEEL-------QAALARAE 1125
Query: 431 ALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLL 610
+ EDL + R +A+AE++ L ++ L+ E D L
Sbjct: 1126 EEGGVRAQLLKSLREAQAGLAEAQEDLEAE-RAARAKAEKQRRDLGEELEALRGELEDTL 1184
Query: 611 GIVSELQLKLNSGGPSEDSFVEIRMAEGEA----DAAMKEIKTSPGPIRTDSIDTSKSAE 778
+ Q +L S E E++ A E + A++E++ G + + + A
Sbjct: 1185 DSTNAQQ-ELRS--KREQEVTELKKALEEETRIHEVAVQELRQRHGQALGELAEQLEQAR 1241
Query: 779 GTRNYLEFEELTV-----------SQLLLCLREGNQKVERLEIALKEAKERILDFEKKAK 925
++ E LT+ S L +EG Q+ RLE L+E + R+ D E+
Sbjct: 1242 RSKGTWEKTRLTLEAEVSELRTELSNLQTARQEGEQRRRRLESQLQEVQGRVGDGERARA 1301
Query: 926 DRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKR 1105
+ + E S+ L+ ++T++ +L +A L E K
Sbjct: 1302 EAAEKLQRAQAELENVSGALSEAE---SKAIRLSKELTSMEAQLHDAQELLQEETRAKLA 1358
Query: 1106 LQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEEKSKLTTL 1285
L + +ALE + + +L+E+ ++ ++++ ++++ + + EEE L
Sbjct: 1359 LGSRARALEAEAAGLREQLDEEAAA---RERAGRELQTAQAQLSEWRRRQEEEAGALEAG 1415
Query: 1286 QLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQ 1465
+ R A + E L +R +EK + V++ L ++ L + +++ +Q
Sbjct: 1416 EEARRR-------AAREAEALNQRLAEKAE--VVERLERGRRRLQQELDDATVDLEQQRQ 1466
Query: 1466 TIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEEG 1645
++ EK L A+ + ER E E+E L L L+++ E
Sbjct: 1467 LVSALEKKQRKFDQLLAEEKAAVLRAVEERERAEAEGREREARTLSLTRALEEEQEAREE 1526
Query: 1646 ASRQS 1660
RQ+
Sbjct: 1527 LERQN 1531
Score = 54.7 bits (130), Expect = 3e-07
Identities = 81/400 (20%), Positives = 164/400 (41%), Gaps = 8/400 (2%)
Frame = +2
Query: 539 EAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKE 718
++ +EV +L+ +VA+L+ E+A L +L+ + +E++ + + E + + E
Sbjct: 895 QSAREVGELQGRVAQLEEERARL---AEQLRAEAELCAEAEETRGRLAARKQELELVVSE 951
Query: 719 IKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQKVERLEIALKEAKER 898
++ G + + S+ + + L+ + + + L EG ++ +LE EAK +
Sbjct: 952 LEARVG----EEEECSRQLQTEKKRLQ-QHIQELETHLEAEEGARQKLQLEKVTTEAKLK 1006
Query: 899 ILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKL 1078
L G ++ +L Q L KE + +L
Sbjct: 1007 KL---------------------------------GEDLLLLEDQNAKLSKERKLLEERL 1033
Query: 1079 SEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKME----Q 1246
SE +EK ++L + + + + ++ L +K ++E ++ + +E Q
Sbjct: 1034 SEFSSQAAEEEEKVKSLNKLRLKYEATIADMEDRLRKEEKSRQELEKLKRRLDVEGSELQ 1093
Query: 1247 AKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQELNGKLEMAEKA 1426
+ E++ + L+ R +E AL EE + V +L L A+
Sbjct: 1094 EQMAEQQQRAEELRAQLGRKEEELQAALARAEE---------EGGVRAQLLKSLREAQAG 1144
Query: 1427 LASKQLQMDEMKQTIAKQEK---DL-ETMAVLRAQMEVYCSDFHAERAAREKIHEEKEQL 1594
LA Q ++ + AK EK DL E + LR ++E +A++ R K +EQ
Sbjct: 1145 LAEAQEDLEAERAARAKAEKQRRDLGEELEALRGELEDTLDSTNAQQELRSK----REQE 1200
Query: 1595 ALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQ 1714
+L L+++ E A + E++ RHG + +Q
Sbjct: 1201 VTELKKALEEETRIHEVA----VQELRQRHGQALGELAEQ 1236
>ref|XP_002693047.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1447
Score = 65.9 bits (159), Expect = 1e-10
Identities = 133/584 (22%), Positives = 236/584 (40%), Gaps = 22/584 (3%)
Frame = +2
Query: 32 GQRLHPGPE-PFPSRQDAEEAVTPREVGSRAPGTAAM-SHQPLSCLTEKGDSPTETTGNG 205
GQ P E P P +++ +E V V PG+ + S +P + + ++ E T
Sbjct: 537 GQEWRPQAEGPGPGQEEPKEKVA---VSPTPPGSPEVRSAEPAALREQLSEAALEATDEA 593
Query: 206 PPTLAHPNLDTF--TPHELLQQMRELLIENHQLKEAMKLNNQ---AMKGRFEELSAWTEK 370
+ E +Q++RE L + EA++L+ Q A+ E+L TE+
Sbjct: 594 VTRELEQEQTRLLESKQEKMQRLREKLCREEEA-EALQLHQQKEKALSSLKEQLQRATEE 652
Query: 371 QKEERLFFETQSKEA-KERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 547
+ ETQ +E ++RL+ L D +AE E
Sbjct: 653 E-------ETQMREQERQRLSRLRAQVQ-----------------SSSEADEDQIRAEQE 688
Query: 548 QEVEQLKTQVARLQ-AEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIK 724
+++L+ ++ LQ AE+A L + S E E+ +E AA+K
Sbjct: 689 ASLQRLREELESLQKAERASL---------EERSRQTLEQLREEMEASEKREQAALK--- 736
Query: 725 TSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQKVERLEIALKEAKER-- 898
++ ++ + R LE E + L RE +++ERL +L EAK R
Sbjct: 737 ----------VEKERALQQLREQLEGERREAAAALE--REHREELERLSSSL-EAKHREV 783
Query: 899 ILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKL 1078
+ +KK ++ + E LQ +L + Q AH ++
Sbjct: 784 VSSLQKKMQE-------------------------AHQKEEAQLQ-ESLGRAEQRAHHRV 817
Query: 1079 SEA----ELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQ 1246
+ + + L+EK Q +ER++ + E+ + + + + + E + ++
Sbjct: 818 YQVLEYEQELSGLLREKRQEVEREHERKMDRMKEEHQQVVAEARQQYEAEERKQRAELLG 877
Query: 1247 AKTEEEKSKLTTLQLTHNRLLQEYNNAL-KTIEELKRRESEKVDKVVLQELNGKLEMAEK 1423
T E L L+ H R L+ + +E+L+RR E+ K LQ+L +LE K
Sbjct: 878 HLTGE----LERLRRAHERELESVRQEQDRQLEDLRRRHREQERK--LQDLEVELETRTK 931
Query: 1424 ALASKQLQMDEMKQTIAKQEK---DLETMAVLRAQMEVYCSDFHAERAAREKIH--EEKE 1588
+ ++ Q+D K+ K+++ D++ VL ++ E + H E A +E H E +
Sbjct: 932 DVKARLAQLDVQKEAARKEKQQLLDVQRQVVLESE-EATATHQHLEEAKKEHTHLLESNQ 990
Query: 1589 QLALQLAVLLKDDNAFEEGASRQSLMEMQS-RHGARASDADQQA 1717
QL L L E S+ L++ QS R SD + QA
Sbjct: 991 QLRRILEELQARKLELE---SQVELLQAQSQRLQKHVSDLEVQA 1031
>ref|XP_001790689.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1447
Score = 65.9 bits (159), Expect = 1e-10
Identities = 133/584 (22%), Positives = 236/584 (40%), Gaps = 22/584 (3%)
Frame = +2
Query: 32 GQRLHPGPE-PFPSRQDAEEAVTPREVGSRAPGTAAM-SHQPLSCLTEKGDSPTETTGNG 205
GQ P E P P +++ +E V V PG+ + S +P + + ++ E T
Sbjct: 537 GQEWRPQAEGPGPGQEEPKEKVA---VSPTPPGSPEVRSAEPAALREQLSEAALEATDEA 593
Query: 206 PPTLAHPNLDTF--TPHELLQQMRELLIENHQLKEAMKLNNQ---AMKGRFEELSAWTEK 370
+ E +Q++RE L + EA++L+ Q A+ E+L TE+
Sbjct: 594 VTRELEQEQTRLLESKQEKMQRLREKLCREEEA-EALQLHQQKEKALSSLKEQLQRATEE 652
Query: 371 QKEERLFFETQSKEA-KERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 547
+ ETQ +E ++RL+ L D +AE E
Sbjct: 653 E-------ETQMREQERQRLSRLRAQVQ-----------------SSSEADEDQIRAEQE 688
Query: 548 QEVEQLKTQVARLQ-AEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIK 724
+++L+ ++ LQ AE+A L + S E E+ +E AA+K
Sbjct: 689 ASLQRLREELESLQKAERASL---------EERSRQTLEQLREEMEASEKREQAALK--- 736
Query: 725 TSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQKVERLEIALKEAKER-- 898
++ ++ + R LE E + L RE +++ERL +L EAK R
Sbjct: 737 ----------VEKERALQQLREQLEGERREAAAALE--REHREELERLSSSL-EAKHREV 783
Query: 899 ILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKL 1078
+ +KK ++ + E LQ +L + Q AH ++
Sbjct: 784 VSSLQKKMQE-------------------------AHQKEEAQLQ-ESLGRAEQRAHHRV 817
Query: 1079 SEA----ELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQ 1246
+ + + L+EK Q +ER++ + E+ + + + + + E + ++
Sbjct: 818 YQVLEYEQELSGLLREKRQEVEREHERKMDRMKEEHQQVVAEARQQYEAEERKQRAELLG 877
Query: 1247 AKTEEEKSKLTTLQLTHNRLLQEYNNAL-KTIEELKRRESEKVDKVVLQELNGKLEMAEK 1423
T E L L+ H R L+ + +E+L+RR E+ K LQ+L +LE K
Sbjct: 878 HLTGE----LERLRRAHERELESVRQEQDRQLEDLRRRHREQERK--LQDLEVELETRTK 931
Query: 1424 ALASKQLQMDEMKQTIAKQEK---DLETMAVLRAQMEVYCSDFHAERAAREKIH--EEKE 1588
+ ++ Q+D K+ K+++ D++ VL ++ E + H E A +E H E +
Sbjct: 932 DVKARLAQLDVQKEAARKEKQQLLDVQRQVVLESE-EATATHQHLEEAKKEHTHLLESNQ 990
Query: 1589 QLALQLAVLLKDDNAFEEGASRQSLMEMQS-RHGARASDADQQA 1717
QL L L E S+ L++ QS R SD + QA
Sbjct: 991 QLRRILEELQARKLELE---SQVELLQAQSQRLQKHVSDLEVQA 1031
>ref|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 3079
Score = 64.3 bits (155), Expect = 4e-10
Identities = 95/455 (20%), Positives = 175/455 (38%), Gaps = 15/455 (3%)
Frame = +2
Query: 323 QAMKGRFEELSAWTEKQKEERLFFETQSKEA-KERLTALSXXXXXXXXXXXXXXXXXXRS 499
Q +K E+LS + + R E + KE KE LS RS
Sbjct: 362 QKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQ---------------RS 406
Query: 500 FEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKL----NSGGPSEDS 667
F+ L + KA QE++Q K LQAE + + +++ KL + +E +
Sbjct: 407 FQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQA 466
Query: 668 FVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREG 847
+ E E + +E+K R +S+ S+S + R EE + + CL +
Sbjct: 467 LQASQTKENELRRSSEEMK------RENSLLKSQSEQRAREVCHLEE-ELKKAKQCLSQS 519
Query: 848 NQKVERLEIALKEAKERILDFEKKAKDRS---XXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
E ++ + + D ++K + S + +
Sbjct: 520 QNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREH 579
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKK---RLQEKCQALERKNSATPSELNEKQELLYN 1189
+ L K +E+ LS EL KK L+E+ R S LN+ +
Sbjct: 580 HIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMES---E 636
Query: 1190 NKKLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEK 1369
+ L+ +V + + +K +Q K+ E ++ TL++ L E N L+ + + K E+E
Sbjct: 637 KESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRN-LQNVIDSKTAEAE- 694
Query: 1370 VDKVVLQELNGKLEMA----EKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCS 1537
K EL K E + EK + + L++ + + E L+ ++ +
Sbjct: 695 TQKRAYGELQQKAEFSDQKHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQ 754
Query: 1538 DFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEE 1642
D HAE + + + ++ A+ + + AFE+
Sbjct: 755 DLHAESESLRDLLKSRDSSAMTIEPHQRSRLAFEQ 789
Score = 60.5 bits (145), Expect = 5e-09
Identities = 115/520 (22%), Positives = 211/520 (40%), Gaps = 45/520 (8%)
Frame = +2
Query: 251 ELLQQMRELLI---ENHQLK-EAMKLNNQAMKGRFE--ELSAWTEKQKEERLFFETQSKE 412
++ ++ +EL+I EN + + E +K + M R + EL T + ++E L + Q K+
Sbjct: 2127 QMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQ 2186
Query: 413 --AKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARL 586
A E T LS E+ + K EA+ VE L+TQ+ L
Sbjct: 2187 GQASELDTLLSSLKNL---------------LEEKEREKIQTKEEAKSAVEMLQTQLREL 2231
Query: 587 QAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTS 766
E A L D ++ E D+ +E++
Sbjct: 2232 TEEIAALC-----------------DDQETWKVEEQSLDSPAQEVQ-----------QLR 2263
Query: 767 KSAEGTRNYLEFEELTVSQLLLCLREGNQK-------VERLEIALK---EAKERILDFEK 916
+ E + +L+ ++ Q+L L+E + VE LE LK E +E + +
Sbjct: 2264 NNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAE 2323
Query: 917 KAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNL--QVTTLFKELQEAHTKLSEAE 1090
K+K G +++++N+ + L KELQ+ +++SE E
Sbjct: 2324 KSKAE--------VETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELE 2375
Query: 1091 --------LMKKRLQEKCQALERKNSATPS--------ELNEKQELLYNNKK-------- 1198
L++++ QEK Q E +A +LNEK L N+++
Sbjct: 2376 TLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELKLNEKMAALGNDQETRKVKEQS 2435
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
L QV+S+ E ++ KS LQ + N L+QE +E+ K++ +K ++
Sbjct: 2436 LSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQE-------VEDGKQKLEKKDEE 2488
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAV-LRAQMEVYCSDFHAER 1555
+ + + + ++ L SK QM+ +Q KQ+ DLE + V L +++V S A +
Sbjct: 2489 ISILKSQTR---DQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQ 2545
Query: 1556 AAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQ 1675
E + L +L + + +F E + ++ E +
Sbjct: 2546 DTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETE 2585
>ref|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 3079
Score = 64.3 bits (155), Expect = 4e-10
Identities = 95/455 (20%), Positives = 175/455 (38%), Gaps = 15/455 (3%)
Frame = +2
Query: 323 QAMKGRFEELSAWTEKQKEERLFFETQSKEA-KERLTALSXXXXXXXXXXXXXXXXXXRS 499
Q +K E+LS + + R E + KE KE LS RS
Sbjct: 362 QKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQ---------------RS 406
Query: 500 FEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKL----NSGGPSEDS 667
F+ L + KA QE++Q K LQAE + + +++ KL + +E +
Sbjct: 407 FQTLDQECTQMKARLTQELQQAKNTYNILQAELDKVTSVKQQIEKKLEEFKQNFSKTEQA 466
Query: 668 FVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREG 847
+ E E + +E+K R +S+ S+S + R EE + + CL +
Sbjct: 467 LQASQTKENELRRSSEEMK------RENSLLKSQSEQRAREVCHLEE-ELKKAKQCLSQS 519
Query: 848 NQKVERLEIALKEAKERILDFEKKAKDRS---XXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
E ++ + + D ++K + S + +
Sbjct: 520 QNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLALADLEKQRDCSQDLLKKREH 579
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKK---RLQEKCQALERKNSATPSELNEKQELLYN 1189
+ L K +E+ LS EL KK L+E+ R S LN+ +
Sbjct: 580 HIEQLNEKLSKTERESEALLSALELKKKEYEELKEEKTLFSRWKSENEQLLNQMES---E 636
Query: 1190 NKKLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEK 1369
+ L+ +V + + +K +Q K+ E ++ TL++ L E N L+ + + K E+E
Sbjct: 637 KESLQSKVNHLETCLKTQQIKSHEYNERVRTLEMERENLNVEIRN-LQNVIDSKTAEAE- 694
Query: 1370 VDKVVLQELNGKLEMA----EKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCS 1537
K EL K E + EK + + L++ + + E L+ ++ +
Sbjct: 695 TQKRAYGELQQKAEFSDQKHEKEIENMCLKISHLTGQVEDLEHKLQLLSSEIMDKDQRYQ 754
Query: 1538 DFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEE 1642
D HAE + + + ++ A+ + + AFE+
Sbjct: 755 DLHAESESLRDLLKSRDSSAMTIEPHQRSRLAFEQ 789
Score = 60.5 bits (145), Expect = 5e-09
Identities = 115/520 (22%), Positives = 211/520 (40%), Gaps = 45/520 (8%)
Frame = +2
Query: 251 ELLQQMRELLI---ENHQLK-EAMKLNNQAMKGRFE--ELSAWTEKQKEERLFFETQSKE 412
++ ++ +EL+I EN + + E +K + M R + EL T + ++E L + Q K+
Sbjct: 2127 QMAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQ 2186
Query: 413 --AKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARL 586
A E T LS E+ + K EA+ VE L+TQ+ L
Sbjct: 2187 GQASELDTLLSSLKNL---------------LEEKEREKIQTKEEAKSAVEMLQTQLREL 2231
Query: 587 QAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTS 766
E A L D ++ E D+ +E++
Sbjct: 2232 TEEIAALC-----------------DDQETWKVEEQSLDSPAQEVQ-----------QLR 2263
Query: 767 KSAEGTRNYLEFEELTVSQLLLCLREGNQK-------VERLEIALK---EAKERILDFEK 916
+ E + +L+ ++ Q+L L+E + VE LE LK E +E + +
Sbjct: 2264 NNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELKLSGENQEHVTLEAE 2323
Query: 917 KAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNL--QVTTLFKELQEAHTKLSEAE 1090
K+K G +++++N+ + L KELQ+ +++SE E
Sbjct: 2324 KSKAE--------VETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKELQKEQSRVSELE 2375
Query: 1091 --------LMKKRLQEKCQALERKNSATPS--------ELNEKQELLYNNKK-------- 1198
L++++ QEK Q E +A +LNEK L N+++
Sbjct: 2376 TLNSSFENLLREKEQEKVQMKEESKAAVEMLQTQLKELKLNEKMAALGNDQETRKVKEQS 2435
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
L QV+S+ E ++ KS LQ + N L+QE +E+ K++ +K ++
Sbjct: 2436 LSSQVDSLEHEKAQLLQDLDDAKSNYMILQSSVNDLIQE-------VEDGKQKLEKKDEE 2488
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAV-LRAQMEVYCSDFHAER 1555
+ + + + ++ L SK QM+ +Q KQ+ DLE + V L +++V S A +
Sbjct: 2489 ISILKSQTR---DQEQLVSKLSQMEGEQQLWKKQKADLENLMVELEQKIQVLQSKNDALQ 2545
Query: 1556 AAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQ 1675
E + L +L + + +F E + ++ E +
Sbjct: 2546 DTLEALQNSSRNLEKELELTKLEKMSFVEKVNTMTVKETE 2585
>ref|XP_002690549.1| PREDICTED: myosin, heavy polypeptide 6, cardiac muscle, alpha-like
[Bos taurus].
Length = 1927
Score = 63.9 bits (154), Expect = 5e-10
Identities = 80/356 (22%), Positives = 152/356 (42%), Gaps = 9/356 (2%)
Frame = +2
Query: 659 EDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCL 838
++ F I+ +++A KE++ + + D + ++ L E QL+
Sbjct: 843 KEEFGRIKETLEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLI--- 899
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
K++ LE +KE ER+ D E+ + + E ++VE
Sbjct: 900 ---KNKIQ-LEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVE 955
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQE----LLY 1186
K L E L E ++ K +EK +AL+ + +L +++ L
Sbjct: 956 KEKHATENKVKNLTEEMAGLDE--IIAKLTKEK-KALQEAHQQALDDLQAEEDKVNTLTK 1012
Query: 1187 NNKKLELQVESMRSEIKMEQA---KTEEEKSKLT-TLQLTHNRLLQEYNNALKTIEELKR 1354
+ KLE QV+ + ++ E+ E K KL L+LT ++ N+ L+ E+LK+
Sbjct: 1013 SKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLDNDKLQLEEKLKK 1072
Query: 1355 RESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYC 1534
+E + + +LN K+E + Q ++ E + I + E++LE RA++E
Sbjct: 1073 KEFD------INQLNSKIEDEQALALQLQKKLKENQARIEELEEELEAERTARAKVEKLR 1126
Query: 1535 SDFHAE-RAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARAS 1699
SD E E++ E ++Q+ + K + F++ R+ L E +H A A+
Sbjct: 1127 SDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQK--MRRDLEEATLQHEATAA 1180
Score = 57.4 bits (137), Expect = 5e-08
Identities = 107/523 (20%), Positives = 207/523 (39%), Gaps = 45/523 (8%)
Frame = +2
Query: 242 TPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKE 421
T H L ++ +L+++ + A ++ + + L+ W +K +E + E+ KEA+
Sbjct: 1407 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1466
Query: 422 RLTAL--SXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAE 595
T L ++ ++ D E + + +L+ +L+ E
Sbjct: 1467 LSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGEGGKNMHELEKVRKQLEVE 1526
Query: 596 KADLLGIVSELQLKL-NSGGPSEDSFVEIRMAEG-------EADAAMKEIKTSPGPIRTD 751
K +L + E + L + G + +E + E D M++ K + + D
Sbjct: 1527 KLELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLVEKDEEMEQAKRNHLRV-VD 1585
Query: 752 SIDTSKSAEGTRNYLEF------EELTVSQLLLCLREGNQKVERLEIALKEAKERILDFE 913
S+ TS AE TR+ E E ++++ + L + N+ + LK A+ + D +
Sbjct: 1586 SLQTSLDAE-TRSRNEALRVKKKMEGDLNEMEIQLSQANRIASEAQKHLKVAQAHLKDTQ 1644
Query: 914 KKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAEL 1093
+ D + +E+E L V E E KL+E EL
Sbjct: 1645 IQLDD---AVRANDDLKENIAIVERRNNLLQAELEELRAVV-----EQTERSRKLAEQEL 1696
Query: 1094 MKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIK--MEQAKTEEEK 1267
++ E+ Q L +N++ L+ KK+E + ++SE++ +++ + EEK
Sbjct: 1697 IE--TSERVQLLHSQNTS----------LINQKKKMESDLTHLQSEVEEAVQECRNAEEK 1744
Query: 1268 SK------------LTTLQLTHNRLLQEYNNALKTIEELKRRESE------KVDKVVLQE 1393
+K L Q T L + N +TI++L+ R E K K LQ+
Sbjct: 1745 AKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQK 1804
Query: 1394 LNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMA---------VLRAQMEVYCSDFH 1546
L ++ E L ++Q + E + + K E+ ++ + +LR Q V
Sbjct: 1805 LEARVRELENELEAEQKRNVESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLK 1864
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQ 1675
+A + + E +EQ L+ K + +E R + E Q
Sbjct: 1865 V-KAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQ 1906
>ref|XP_002700601.1| PREDICTED: myosin, heavy polypeptide 6, cardiac muscle, alpha-like
[Bos taurus].
Length = 1938
Score = 63.9 bits (154), Expect = 5e-10
Identities = 80/356 (22%), Positives = 152/356 (42%), Gaps = 9/356 (2%)
Frame = +2
Query: 659 EDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCL 838
++ F I+ +++A KE++ + + D + ++ L E QL+
Sbjct: 854 KEEFGRIKETLEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLNDAEERCDQLI--- 910
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
K++ LE +KE ER+ D E+ + + E ++VE
Sbjct: 911 ---KNKIQ-LEAKVKEMTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVE 966
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQE----LLY 1186
K L E L E ++ K +EK +AL+ + +L +++ L
Sbjct: 967 KEKHATENKVKNLTEEMAGLDE--IIAKLTKEK-KALQEAHQQALDDLQAEEDKVNTLTK 1023
Query: 1187 NNKKLELQVESMRSEIKMEQA---KTEEEKSKLT-TLQLTHNRLLQEYNNALKTIEELKR 1354
+ KLE QV+ + ++ E+ E K KL L+LT ++ N+ L+ E+LK+
Sbjct: 1024 SKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLDNDKLQLEEKLKK 1083
Query: 1355 RESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYC 1534
+E + + +LN K+E + Q ++ E + I + E++LE RA++E
Sbjct: 1084 KEFD------INQLNSKIEDEQALALQLQKKLKENQARIEELEEELEAERTARAKVEKLR 1137
Query: 1535 SDFHAE-RAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARAS 1699
SD E E++ E ++Q+ + K + F++ R+ L E +H A A+
Sbjct: 1138 SDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQK--MRRDLEEATLQHEATAA 1191
Score = 57.4 bits (137), Expect = 5e-08
Identities = 107/523 (20%), Positives = 207/523 (39%), Gaps = 45/523 (8%)
Frame = +2
Query: 242 TPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKE 421
T H L ++ +L+++ + A ++ + + L+ W +K +E + E+ KEA+
Sbjct: 1418 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 1477
Query: 422 RLTAL--SXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAE 595
T L ++ ++ D E + + +L+ +L+ E
Sbjct: 1478 LSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGEGGKNMHELEKVRKQLEVE 1537
Query: 596 KADLLGIVSELQLKL-NSGGPSEDSFVEIRMAEG-------EADAAMKEIKTSPGPIRTD 751
K +L + E + L + G + +E + E D M++ K + + D
Sbjct: 1538 KLELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLVEKDEEMEQAKRNHLRV-VD 1596
Query: 752 SIDTSKSAEGTRNYLEF------EELTVSQLLLCLREGNQKVERLEIALKEAKERILDFE 913
S+ TS AE TR+ E E ++++ + L + N+ + LK A+ + D +
Sbjct: 1597 SLQTSLDAE-TRSRNEALRVKKKMEGDLNEMEIQLSQANRIASEAQKHLKVAQAHLKDTQ 1655
Query: 914 KKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAEL 1093
+ D + +E+E L V E E KL+E EL
Sbjct: 1656 IQLDD---AVRANDDLKENIAIVERRNNLLQAELEELRAVV-----EQTERSRKLAEQEL 1707
Query: 1094 MKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIK--MEQAKTEEEK 1267
++ E+ Q L +N++ L+ KK+E + ++SE++ +++ + EEK
Sbjct: 1708 IE--TSERVQLLHSQNTS----------LINQKKKMESDLTHLQSEVEEAVQECRNAEEK 1755
Query: 1268 SK------------LTTLQLTHNRLLQEYNNALKTIEELKRRESE------KVDKVVLQE 1393
+K L Q T L + N +TI++L+ R E K K LQ+
Sbjct: 1756 AKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQK 1815
Query: 1394 LNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMA---------VLRAQMEVYCSDFH 1546
L ++ E L ++Q + E + + K E+ ++ + +LR Q V
Sbjct: 1816 LEARVRELENELEAEQKRNVESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLK 1875
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQ 1675
+A + + E +EQ L+ K + +E R + E Q
Sbjct: 1876 V-KAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQ 1917
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,024,128
Number of extensions: 1758512
Number of successful extensions: 9366
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 8884
Number of HSP's successfully gapped: 95
Length of query: 662
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,074,782
Effective search space: 7783354446
Effective search space used: 7783354446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012815
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012815
(1986 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535187.2| PREDICTED: similar to optineurin isoform 1 [Can... 855 0.0
Alignment gi|XP_857624.1| PREDICTED: similar to optineurin isoform 6 [Can... 851 0.0
Alignment gi|XP_857661.1| PREDICTED: similar to optineurin isoform 7 [Can... 848 0.0
Alignment gi|XP_857507.1| PREDICTED: similar to optineurin isoform 3 [Can... 848 0.0
Alignment gi|XP_857546.1| PREDICTED: similar to optineurin isoform 4 [Can... 780 0.0
Alignment gi|XP_857586.1| PREDICTED: similar to optineurin isoform 5 [Can... 687 0.0
Alignment gi|XP_855401.1| PREDICTED: similar to inhibitor of kappa light ... 116 1e-28
Alignment gi|XP_532787.2| PREDICTED: similar to golgi-associated microtub... 63 9e-10
Alignment gi|XP_862319.1| PREDICTED: similar to smooth muscle myosin heav... 63 9e-10
Alignment gi|XP_531648.2| PREDICTED: similar to kinesin family member 5A ... 62 2e-09
>ref|XP_535187.2| PREDICTED: similar to optineurin isoform 1 [Canis familiaris].
Length = 573
Score = 855 bits (2209), Expect(2) = 0.0
Identities = 447/553 (80%), Positives = 477/553 (86%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK 856
IR+AEGEAD A++EI+TSPGP RTDS+DT+KS EG RNYLEFE+LTVSQLLLCLRE NQK
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSVDTNKSTEGARNYLEFEKLTVSQLLLCLREENQK 240
Query: 857 VERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQV 1036
VERL+ ALKEAKER+L FEKKA S PETVGSEVE LN QV
Sbjct: 241 VERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGPETVGSEVETLNRQV 300
Query: 1037 TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVE 1216
TTLFKELQEAHTKLSEAELMKKRLQEKCQ LERKNSATPSELNEKQEL+YNNKKLELQVE
Sbjct: 301 TTLFKELQEAHTKLSEAELMKKRLQEKCQTLERKNSATPSELNEKQELVYNNKKLELQVE 360
Query: 1217 SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL 1396
SMRSEIKMEQAKTEEEKSKL TLQLTHN+LLQEYNN+LKTIEELKR+ESEKVDKV+LQEL
Sbjct: 361 SMRSEIKMEQAKTEEEKSKLATLQLTHNKLLQEYNNSLKTIEELKRKESEKVDKVILQEL 420
Query: 1397 NGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH 1576
+ KLE+AEKALASKQLQMDEMKQTI KQE+DLETM VLRAQMEVYCSDFHAERAAREKIH
Sbjct: 421 SEKLELAEKALASKQLQMDEMKQTITKQEEDLETMTVLRAQMEVYCSDFHAERAAREKIH 480
Query: 1577 EEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAEDRNWL 1756
EEKEQLALQLA+LLK++NAFE+G RQSLMEMQSRHGAR SD DQQA+LV RG EDR+W
Sbjct: 481 EEKEQLALQLAILLKENNAFEDG-GRQSLMEMQSRHGARTSDPDQQAYLVQRGTEDRSWQ 539
Query: 1757 QQQQQNIPIHSCP 1795
+QQQ+NIPIHSCP
Sbjct: 540 RQQQRNIPIHSCP 552
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 552 PKCGEVLPDIDTLQIHVMDCII 573
>ref|XP_857624.1| PREDICTED: similar to optineurin isoform 6 [Canis familiaris].
Length = 591
Score = 851 bits (2199), Expect(2) = 0.0
Identities = 448/570 (78%), Positives = 478/570 (83%), Gaps = 17/570 (2%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 497 S-----------------FEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSE 625
F+D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSE
Sbjct: 121 PRIDVMARCEFDSLSFCHFQDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSE 180
Query: 626 LQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE 805
LQLKLNSGGPSEDSFVEIR+AEGEAD A++EI+TSPGP RTDS+DT+KS EG RNYLEFE
Sbjct: 181 LQLKLNSGGPSEDSFVEIRIAEGEADVAVREIRTSPGPTRTDSVDTNKSTEGARNYLEFE 240
Query: 806 ELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXX 985
+LTVSQLLLCLRE NQKVERL+ ALKEAKER+L FEKKA S
Sbjct: 241 KLTVSQLLLCLREENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEE 300
Query: 986 XSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELN 1165
PETVGSEVE LN QVTTLFKELQEAHTKLSEAELMKKRLQEKCQ LERKNSATPSELN
Sbjct: 301 KGPETVGSEVETLNRQVTTLFKELQEAHTKLSEAELMKKRLQEKCQTLERKNSATPSELN 360
Query: 1166 EKQELLYNNKKLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEE 1345
EKQEL+YNNKKLELQVESMRSEIKMEQAKTEEEKSKL TLQLTHN+LLQEYNN+LKTIEE
Sbjct: 361 EKQELVYNNKKLELQVESMRSEIKMEQAKTEEEKSKLATLQLTHNKLLQEYNNSLKTIEE 420
Query: 1346 LKRRESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQME 1525
LKR+ESEKVDKV+LQEL+ KLE+AEKALASKQLQMDEMKQTI KQE+DLETM VLRAQME
Sbjct: 421 LKRKESEKVDKVILQELSEKLELAEKALASKQLQMDEMKQTITKQEEDLETMTVLRAQME 480
Query: 1526 VYCSDFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDA 1705
VYCSDFHAERAAREKIHEEKEQLALQLA+LLK++NAFE+G SRQSLMEMQSRHGAR SD
Sbjct: 481 VYCSDFHAERAAREKIHEEKEQLALQLAILLKENNAFEDGGSRQSLMEMQSRHGARTSDP 540
Query: 1706 DQQAFLVXRGAEDRNWLQQQQQNIPIHSCP 1795
DQQA+LV RG EDR+W +QQQ+NIPIHSCP
Sbjct: 541 DQQAYLVQRGTEDRSWQRQQQRNIPIHSCP 570
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 570 PKCGEVLPDIDTLQIHVMDCII 591
>ref|XP_857661.1| PREDICTED: similar to optineurin isoform 7 [Canis familiaris].
Length = 579
Score = 848 bits (2192), Expect(2) = 0.0
Identities = 447/559 (79%), Positives = 477/559 (85%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 838
IR+AEGEAD A++EI+TSPGP RTDS+DT +KS EG RNYLEFE+LTVSQLLLCL
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSVDTLLTHPMNKSTEGARNYLEFEKLTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
RE NQKVERL+ ALKEAKER+L FEKKA S PETVGSEVE
Sbjct: 241 REENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LN QVTTLFKELQEAHTKLSEAELMKKRLQEKCQ LERKNSATPSELNEKQEL+YNNKK
Sbjct: 301 TLNRQVTTLFKELQEAHTKLSEAELMKKRLQEKCQTLERKNSATPSELNEKQELVYNNKK 360
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
LELQVESMRSEIKMEQAKTEEEKSKL TLQLTHN+LLQEYNN+LKTIEELKR+ESEKVDK
Sbjct: 361 LELQVESMRSEIKMEQAKTEEEKSKLATLQLTHNKLLQEYNNSLKTIEELKRKESEKVDK 420
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
V+LQEL+ KLE+AEKALASKQLQMDEMKQTI KQE+DLETM VLRAQMEVYCSDFHAERA
Sbjct: 421 VILQELSEKLELAEKALASKQLQMDEMKQTITKQEEDLETMTVLRAQMEVYCSDFHAERA 480
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLA+LLK++NAFE+G RQSLMEMQSRHGAR SD DQQA+LV RG
Sbjct: 481 AREKIHEEKEQLALQLAILLKENNAFEDG-GRQSLMEMQSRHGARTSDPDQQAYLVQRGT 539
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQQ+NIPIHSCP
Sbjct: 540 EDRSWQRQQQRNIPIHSCP 558
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 558 PKCGEVLPDIDTLQIHVMDCII 579
>ref|XP_857507.1| PREDICTED: similar to optineurin isoform 3 [Canis familiaris].
Length = 579
Score = 848 bits (2192), Expect(2) = 0.0
Identities = 447/559 (79%), Positives = 477/559 (85%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 838
IR+AEGEAD A++EI+TSPGP RTDS+DT +KS EG RNYLEFE+LTVSQLLLCL
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSVDTRCHEHRNKSTEGARNYLEFEKLTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
RE NQKVERL+ ALKEAKER+L FEKKA S PETVGSEVE
Sbjct: 241 REENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LN QVTTLFKELQEAHTKLSEAELMKKRLQEKCQ LERKNSATPSELNEKQEL+YNNKK
Sbjct: 301 TLNRQVTTLFKELQEAHTKLSEAELMKKRLQEKCQTLERKNSATPSELNEKQELVYNNKK 360
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
LELQVESMRSEIKMEQAKTEEEKSKL TLQLTHN+LLQEYNN+LKTIEELKR+ESEKVDK
Sbjct: 361 LELQVESMRSEIKMEQAKTEEEKSKLATLQLTHNKLLQEYNNSLKTIEELKRKESEKVDK 420
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
V+LQEL+ KLE+AEKALASKQLQMDEMKQTI KQE+DLETM VLRAQMEVYCSDFHAERA
Sbjct: 421 VILQELSEKLELAEKALASKQLQMDEMKQTITKQEEDLETMTVLRAQMEVYCSDFHAERA 480
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLA+LLK++NAFE+G RQSLMEMQSRHGAR SD DQQA+LV RG
Sbjct: 481 AREKIHEEKEQLALQLAILLKENNAFEDG-GRQSLMEMQSRHGARTSDPDQQAYLVQRGT 539
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQQ+NIPIHSCP
Sbjct: 540 EDRSWQRQQQRNIPIHSCP 558
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 558 PKCGEVLPDIDTLQIHVMDCII 579
>ref|XP_857546.1| PREDICTED: similar to optineurin isoform 4 [Canis familiaris].
Length = 546
Score = 780 bits (2013), Expect(2) = 0.0
Identities = 414/553 (74%), Positives = 446/553 (80%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S +D GD + PKAEA+QEVEQLKTQV E+S
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQV---------------------------EESLSF 153
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK 856
+ + EGEAD A++EI+TSPGP RTDS+DT+KS EG RNYLEFE+LTVSQLLLCLRE NQK
Sbjct: 154 LPLQEGEADVAVREIRTSPGPTRTDSVDTNKSTEGARNYLEFEKLTVSQLLLCLREENQK 213
Query: 857 VERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQV 1036
VERL+ ALKEAKER+L FEKKA S PETVGSEVE LN QV
Sbjct: 214 VERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGPETVGSEVETLNRQV 273
Query: 1037 TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVE 1216
TTLFKELQEAHTKLSEAELMKKRLQEKCQ LERKNSATPSELNEKQEL+YNNKKLELQVE
Sbjct: 274 TTLFKELQEAHTKLSEAELMKKRLQEKCQTLERKNSATPSELNEKQELVYNNKKLELQVE 333
Query: 1217 SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL 1396
SMRSEIKMEQAKTEEEKSKL TLQLTHN+LLQEYNN+LKTIEELKR+ESEKVDKV+LQEL
Sbjct: 334 SMRSEIKMEQAKTEEEKSKLATLQLTHNKLLQEYNNSLKTIEELKRKESEKVDKVILQEL 393
Query: 1397 NGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH 1576
+ KLE+AEKALASKQLQMDEMKQTI KQE+DLETM VLRAQMEVYCSDFHAERAAREKIH
Sbjct: 394 SEKLELAEKALASKQLQMDEMKQTITKQEEDLETMTVLRAQMEVYCSDFHAERAAREKIH 453
Query: 1577 EEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAEDRNWL 1756
EEKEQLALQLA+LLK++NAFE+G RQSLMEMQSRHGAR SD DQQA+LV RG EDR+W
Sbjct: 454 EEKEQLALQLAILLKENNAFEDG-GRQSLMEMQSRHGARTSDPDQQAYLVQRGTEDRSWQ 512
Query: 1757 QQQQQNIPIHSCP 1795
+QQQ+NIPIHSCP
Sbjct: 513 RQQQRNIPIHSCP 525
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 525 PKCGEVLPDIDTLQIHVMDCII 546
>ref|XP_857586.1| PREDICTED: similar to optineurin isoform 5 [Canis familiaris].
Length = 529
Score = 687 bits (1772), Expect(2) = 0.0
Identities = 386/559 (69%), Positives = 419/559 (74%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLT KGDS ETTGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTAKGDSSNETTGNGPPNLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL+FE QSKEAKERL ALS
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLYFEVQSKEAKERLMALSHENEKLKEELEKLKGKTEM 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S +D GD + PKAEA+QEVEQLKTQVA LQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SLKDPAGDLKAPKAEADQEVEQLKTQVAYLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDS-----ID-TSKSAEGTRNYLEFEELTVSQLLLCL 838
IR+AEGEAD A++EI+TSPGP RTDS +D +KS EG RNYLEFE+LTVSQLLLCL
Sbjct: 181 IRIAEGEADVAVREIRTSPGPTRTDSAARLLVDFVNKSTEGARNYLEFEKLTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
RE NQKVERL+ ALKEAKER+L FEKKA S PETVGSEVE
Sbjct: 241 REENQKVERLKTALKEAKERVLYFEKKASGGSEIETQTEESTEKEKEEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LN QVTTLFKELQEAHTKLSEAELMKKRLQEK S+L Q L +NK
Sbjct: 301 TLNRQVTTLFKELQEAHTKLSEAELMKKRLQEK------------SKLATLQ--LTHNKL 346
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
L +E + L T++ ELKR+ESEKVDK
Sbjct: 347 L------------------QEYNNSLKTIE------------------ELKRKESEKVDK 370
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
V+LQEL+ KLE+AEKALASKQLQMDEMKQTI KQE+DLETM VLRAQMEVYCSDFHAERA
Sbjct: 371 VILQELSEKLELAEKALASKQLQMDEMKQTITKQEEDLETMTVLRAQMEVYCSDFHAERA 430
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLA+LLK++NAFE+G RQSLMEMQSRHGAR SD DQQA+LV RG
Sbjct: 431 AREKIHEEKEQLALQLAILLKENNAFEDG-GRQSLMEMQSRHGARTSDPDQQAYLVQRGT 489
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQQ+NIPIHSCP
Sbjct: 490 EDRSWQRQQQRNIPIHSCP 508
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 508 PKCGEVLPDIDTLQIHVMDCII 529
>ref|XP_855401.1| PREDICTED: similar to inhibitor of kappa light polypeptide gene
enhancer in B-cells, kinase gamma [Canis familiaris].
Length = 285
Score = 116 bits (290), Expect(2) = 1e-28
Identities = 72/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A + SE +Q+ +L +
Sbjct: 11 QVTSLLGELQESQSRLEAATKERQALEGRARAASEQARQLESEREALQQQHSVQVDQLRM 70
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE+ + L
Sbjct: 71 QSQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKS----SMVSSERNRGMQL 126
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 127 EDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQARE 186
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ + + + +E ++ RH
Sbjct: 187 KLAEKKEILQDQLEQLQREYSRLKASCQESARIEDLRKRH 226
Score = 30.4 bits (67), Expect(2) = 1e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 264 PKCQYQAPDMDTLQIHVMECI 284
>ref|XP_532787.2| PREDICTED: similar to golgi-associated microtubule-binding protein
HOOK3 [Canis familiaris].
Length = 718
Score = 63.2 bits (152), Expect = 9e-10
Identities = 79/388 (20%), Positives = 157/388 (40%), Gaps = 27/388 (6%)
Frame = +2
Query: 533 KAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDS---------FVEIRM 685
K E Q +L QVA LQ EK+ LL L +LN ED ++ ++
Sbjct: 192 KEEIAQRCHELDMQVAALQEEKSSLLAENQVLMERLNQSDSIEDPNSPAGRRHLQLQTQL 251
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRN----YLEFEELTVSQLLLCLREGNQ 853
+ + + E IR + ++ S +N L E ++ + LR +
Sbjct: 252 EQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEIDVLRHSSD 311
Query: 854 KVERLEIALKEAKERIL---DFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEML 1024
KV +LE ++ K+++ D ++ K S++E
Sbjct: 312 KVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARSQLETY 371
Query: 1025 NLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLE 1204
QV L L E K + + KRL+EK +L+++ +E + +E + + ++
Sbjct: 372 KRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERDSLKETIEELRCVQ 431
Query: 1205 LQVESMRSEIKM---EQAKTEEEKSKLTTLQLTHNRL-LQEYNNALKTIEELKRRESEKV 1372
Q + ++ M Q ++ +++ T ++ + LQ N LK +E E +
Sbjct: 432 AQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKINQEGSDNEKIAL 491
Query: 1373 DKVVLQELN---GKLE----MAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVY 1531
+ +L + N +LE + + L Q Q++E+++++ Q E +L+ ++E +
Sbjct: 492 LQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEH 551
Query: 1532 CSDFHAERAAREKIHEEKEQLALQLAVL 1615
EK+HE +L + A++
Sbjct: 552 L----------EKLHEANNELQKKRAII 569
>ref|XP_862319.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform SM2
isoform 5 [Canis familiaris].
Length = 1533
Score = 63.2 bits (152), Expect = 9e-10
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 12/225 (5%)
Frame = +2
Query: 1028 LQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLEL 1207
LQVT +E+Q +L + + +++ + + + LE+K++ E N QE L +L
Sbjct: 845 LQVTRQEEEMQAKEDELQKTKERQQKAENELKELEQKHTQLAEEKNLLQEQLQAETELYA 904
Query: 1208 QVESMRSEIKME-----------QAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELK- 1351
+ E MR + + +A+ EEE+ + LQ ++ Q+ + + +EE +
Sbjct: 905 EAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAEKKKMAQQMLDLEEQLEEEEA 964
Query: 1352 RRESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVY 1531
R+ +++KV + KLE L + +D +Q ++ EK + L A+ +
Sbjct: 965 ARQKLQLEKVTAEAKIKKLEDDILELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKSI 1024
Query: 1532 CSDFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLM 1666
S + ER E EKE AL LA L++ +E R + M
Sbjct: 1025 SSKYADERDRAEAEAREKETKALSLARALEEALEAKEELERTNKM 1069
Score = 54.3 bits (129), Expect = 4e-07
Identities = 90/433 (20%), Positives = 180/433 (41%), Gaps = 10/433 (2%)
Frame = +2
Query: 257 LQQMRELLIENHQLKEAMKLNNQAMKGRFE-ELSAWTEKQKEERLFFETQSKEAKERLTA 433
L+++ + L K +++N QA+KG+FE +L A E+ +E+R + Q
Sbjct: 1109 LEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLH-------- 1160
Query: 434 LSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLG 613
E E E+E + Q A A K L G
Sbjct: 1161 -----------------------------------EYETELEDERKQRALAAAAKKKLEG 1185
Query: 614 IVSELQLKLNSG-GPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRN 790
+ +L+L+ +S E++ ++R + + +E++ + R + T+K E
Sbjct: 1186 DLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELEDARAS-RDEIFATAKENEKKAK 1244
Query: 791 YLEFEELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXX 970
LE + + Q E L A + K+ L+ E+ A++ +
Sbjct: 1245 SLEADLM-------------QLQEDLAAAERARKQADLEKEELAEELA------------ 1279
Query: 971 XXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAT 1150
T+ E L ++ L +EL+E + E M R+++ Q E+ N+
Sbjct: 1280 --SSVSGRNTLQDEKRRLEARIAQLEEELEEEQGNM---EAMSDRVRKATQQAEQLNNEL 1334
Query: 1151 PSELNEKQELLYNNKKLELQVESMRSEI-KMEQAKTEEEKSKLTTLQL----THNRLLQE 1315
+E + Q+ ++LE Q + +RS++ +ME A + KS + L+ ++ QE
Sbjct: 1335 ATERSAAQKNESARQQLERQNKELRSKLQEMEGAVKSKFKSTIAALEAKIAQLEEQVEQE 1394
Query: 1316 YNNALKTIEELKRRESEKVDKVVLQELNGKLEMAE--KALASK-QLQMDEMKQTIAKQEK 1486
T + LK++ +K K VL ++ + +MAE K A K ++ ++K+ + + E+
Sbjct: 1395 AREKQATAKSLKQK--DKKLKEVLLQVEDERKMAEQYKEQAEKGNAKVKQLKRQLEEAEE 1452
Query: 1487 DLETMAVLRAQME 1525
+ + + R +++
Sbjct: 1453 ESQRINANRRKLQ 1465
>ref|XP_531648.2| PREDICTED: similar to kinesin family member 5A isoform 1 [Canis
familiaris].
Length = 1032
Score = 62.4 bits (150), Expect = 2e-09
Identities = 101/504 (20%), Positives = 203/504 (40%), Gaps = 36/504 (7%)
Frame = +2
Query: 251 ELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLT 430
+L++++++ +++ +L + + +N+ ++ L + + K+E KE L
Sbjct: 440 QLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDE----------VKEVLQ 489
Query: 431 ALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLL 610
AL E+L + E E++ +Q + V L + A +L
Sbjct: 490 AL----------------------EELAVNYDQKSQEVEEKSQQNQLLVDELSQKVATML 527
Query: 611 GIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRN 790
+ SELQ G E+ + MK++ + I G
Sbjct: 528 ALESELQRLQEVSGHQRKRIAEV------LNGLMKDLSEFSVIVGNGEIKLPVEISGAIE 581
Query: 791 YLEFEELTVSQLLL-------------CLREGNQKVE---RLEIALKEAKE-RILDFEKK 919
EE TV++L + C + N +VE ++E+ +E ++L + +
Sbjct: 582 ----EEFTVARLYISKIKSEVKSVVKRCRQLENLQVECHRKMEVTGRELSSCQLLISQHE 637
Query: 920 AKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMK 1099
AK RS S +++ E+ L Q T L++ +A+ +K
Sbjct: 638 AKIRSLTEYMQSVELKKRHLEE-SYDSLSDELAKLQAQETVHEVALKDKEPDTQDADEVK 696
Query: 1100 KRLQEKCQ----ALERKNSATPSELNEKQ----ELLYNNKKLELQVESMRSEIKMEQAKT 1255
K L+ + + A R+ + E+NEKQ EL N+KL+L++E ++++ + + +
Sbjct: 697 KALEVQMESHREAHHRQLARLRDEINEKQKTIDELKDLNQKLQLELEKLQADYEKLKNEE 756
Query: 1256 EEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE---KVDKVVLQELNGKLEMAEKA 1426
E+ SKL L + R Q + LK +EE RE + + K+ +Q++ +++ + +
Sbjct: 757 HEKSSKLQELTFLYERHEQSKQD-LKGLEETVARELQTLHNLRKLFVQDVTTRVKKSAEM 815
Query: 1427 LASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAE--------RAAREKIHEE 1582
+ KQ I+ E +LE + + Q+ +D E RA E++
Sbjct: 816 EPEDSGGIHSQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 875
Query: 1583 KEQLALQLAVLLKDDNAFEEGASR 1654
+ L +KD +++ R
Sbjct: 876 EGALKEAKEGAMKDKRRYQQEVDR 899
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,197,727
Number of extensions: 1826970
Number of successful extensions: 10740
Number of sequences better than 1.0e-05: 136
Number of HSP's gapped: 9938
Number of HSP's successfully gapped: 265
Length of query: 662
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 553
Effective length of database: 15,240,880
Effective search space: 8428206640
Effective search space used: 8428206640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012815
(1986 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999126.1| optineurin [Sus scrofa]. 982 0.0
Alignment gi|XP_003360565.1| PREDICTED: NF-kappa-B essential modulator-li... 117 2e-29
Alignment gi|NP_001106524.1| NF-kappa-B essential modulator [Sus scrofa]. 117 2e-29
Alignment gi|XP_003360566.1| PREDICTED: NF-kappa-B essential modulator-li... 115 7e-29
Alignment gi|XP_003360567.1| PREDICTED: NF-kappa-B essential modulator-li... 52 5e-10
Alignment gi|XP_003358335.1| PREDICTED: myosin-10-like, partial [Sus scro... 62 1e-09
Alignment gi|XP_003130443.2| PREDICTED: centromere protein F, partial [Su... 62 1e-09
Alignment gi|XP_003358845.1| PREDICTED: golgin subfamily B member 1-like ... 61 3e-09
Alignment gi|XP_003132694.2| PREDICTED: golgin subfamily B member 1-like ... 61 3e-09
Alignment gi|XP_003356754.1| PREDICTED: myosin-7-like [Sus scrofa]. 60 4e-09
>ref|NP_999126.1| optineurin [Sus scrofa].
Length = 574
Score = 982 bits (2538), Expect(2) = 0.0
Identities = 516/553 (93%), Positives = 516/553 (93%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSLENEKLKQELGKLKGKTER 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE
Sbjct: 121 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK 856
IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK
Sbjct: 181 IRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQK 240
Query: 857 VERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQV 1036
VERLEIALKEAKERILDFEKKAKDRS SPETVGSEVEMLNLQV
Sbjct: 241 VERLEIALKEAKERILDFEKKAKDRSETETQTEEHKEQEKEEEKSPETVGSEVEMLNLQV 300
Query: 1037 TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVE 1216
TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVE
Sbjct: 301 TTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVE 360
Query: 1217 SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL 1396
SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL
Sbjct: 361 SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQEL 420
Query: 1397 NGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH 1576
NGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH
Sbjct: 421 NGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIH 480
Query: 1577 EEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAEDRNWL 1756
EEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLV RGAEDRNWL
Sbjct: 481 EEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVQRGAEDRNWL 540
Query: 1757 QQQQQNIPIHSCP 1795
QQQQQNIPIHSCP
Sbjct: 541 QQQQQNIPIHSCP 553
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTLLIHVTDCII
Sbjct: 553 PKCGEVLPDIDTLLIHVTDCII 574
>ref|XP_003360565.1| PREDICTED: NF-kappa-B essential modulator-like isoform 1 [Sus
scrofa].
Length = 419
Score = 117 bits (293), Expect(2) = 2e-29
Identities = 80/227 (35%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSEL----NEKQELLYNNK- 1195
QVT+L ELQE+ ++L A K+R QALE + AT ++ NE++ L +
Sbjct: 145 QVTSLLGELQESQSRLEAAT--KER-----QALESRVRATSEQVRQLENEREALQQQHSV 197
Query: 1196 ---KLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L LQ +SM + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE
Sbjct: 198 QVDQLRLQSQSMEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV----SSE 253
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
+ + L++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF
Sbjct: 254 RNRGLQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 313
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
AER ARE++ E KE L QL L ++ + + + +E M+ RH
Sbjct: 314 AERQAREQLAERKELLQEQLEQLQREYSRLKTSCQESARIEDMRKRH 360
Score = 31.2 bits (69), Expect(2) = 2e-29
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1771 EYSNSFLPQCGEVLPDIDTLLIHVTDCI 1854
E N P+C PD+DTL IHV +CI
Sbjct: 391 EPPNFCCPKCQYQAPDMDTLQIHVMECI 418
Score = 55.8 bits (133), Expect = 8e-08
Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 1/394 (0%)
Frame = +2
Query: 188 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 367
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 368 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 547
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 548 QEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKT 727
QEVE LKT ++ +KA + V+ L E++ ++ +AA KE +
Sbjct: 123 QEVELLKTCQQQMAEDKASVKAQVTSL-------------LGELQESQSRLEAATKERQA 169
Query: 728 SPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVERLEIALKEAKERIL 904
+R S + + E R L+ + + V QL L + + +E AL+ ER
Sbjct: 170 LESRVRATS-EQVRQLENEREALQQQHSVQVDQLRL-------QSQSMEAALR--MERQA 219
Query: 905 DFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSE 1084
E+K R +V S LQ+ L ++LQ+A L
Sbjct: 220 ASEEK---RKLAQLQVAYHQLFQEYDNHIKSSVVSSERNRGLQLEDLKQQLQQAEEALVA 276
Query: 1085 AELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEE 1264
+ + +L+E+ + + P + + Q +Y K + Q E E E+ + +E
Sbjct: 277 KQEVIDKLKEEAEQHKIVMETVP--VLKAQADIY---KADFQAERQAREQLAERKELLQE 331
Query: 1265 KSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L LQ ++RL + + IE++++R E
Sbjct: 332 --QLEQLQREYSRLKTSCQESAR-IEDMRKRHVE 362
>ref|NP_001106524.1| NF-kappa-B essential modulator [Sus scrofa].
Length = 419
Score = 117 bits (293), Expect(2) = 2e-29
Identities = 80/227 (35%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSEL----NEKQELLYNNK- 1195
QVT+L ELQE+ ++L A K+R QALE + AT ++ NE++ L +
Sbjct: 145 QVTSLLGELQESQSRLEAAT--KER-----QALESRVRATSEQVRQLENEREALQQQHSV 197
Query: 1196 ---KLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L LQ +SM + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE
Sbjct: 198 QVDQLRLQSQSMEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV----SSE 253
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
+ + L++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF
Sbjct: 254 RNRGLQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 313
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
AER ARE++ E KE L QL L ++ + + + +E M+ RH
Sbjct: 314 AERQAREQLAERKELLQEQLEQLQREYSRLKTSCQESARIEDMRKRH 360
Score = 31.2 bits (69), Expect(2) = 2e-29
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1771 EYSNSFLPQCGEVLPDIDTLLIHVTDCI 1854
E N P+C PD+DTL IHV +CI
Sbjct: 391 EPPNFCCPKCQYQAPDMDTLQIHVMECI 418
Score = 55.8 bits (133), Expect = 8e-08
Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 1/394 (0%)
Frame = +2
Query: 188 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 367
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 368 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 547
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 548 QEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKT 727
QEVE LKT ++ +KA + V+ L E++ ++ +AA KE +
Sbjct: 123 QEVELLKTCQQQMAEDKASVKAQVTSL-------------LGELQESQSRLEAATKERQA 169
Query: 728 SPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVERLEIALKEAKERIL 904
+R S + + E R L+ + + V QL L + + +E AL+ ER
Sbjct: 170 LESRVRATS-EQVRQLENEREALQQQHSVQVDQLRL-------QSQSMEAALR--MERQA 219
Query: 905 DFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSE 1084
E+K R +V S LQ+ L ++LQ+A L
Sbjct: 220 ASEEK---RKLAQLQVAYHQLFQEYDNHIKSSVVSSERNRGLQLEDLKQQLQQAEEALVA 276
Query: 1085 AELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEE 1264
+ + +L+E+ + + P + + Q +Y K + Q E E E+ + +E
Sbjct: 277 KQEVIDKLKEEAEQHKIVMETVP--VLKAQADIY---KADFQAERQAREQLAERKELLQE 331
Query: 1265 KSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L LQ ++RL + + IE++++R E
Sbjct: 332 --QLEQLQREYSRLKTSCQESAR-IEDMRKRHVE 362
>ref|XP_003360566.1| PREDICTED: NF-kappa-B essential modulator-like isoform 2 [Sus
scrofa].
Length = 411
Score = 115 bits (288), Expect(2) = 7e-29
Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSEL----NEKQELLYNNK- 1195
QVT+L ELQE+ ++L A K+R QALE + AT ++ NE++ L +
Sbjct: 144 QVTSLLGELQESQSRLEAAT--KER-----QALESRVRATSEQVRQLENEREALQQQHSV 196
Query: 1196 ---KLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L LQ +SM + ++ME+ EEK KL LQ+ +++L QEY+N +K+ L+
Sbjct: 197 QVDQLRLQSQSMEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVGLQ----- 251
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
L++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF
Sbjct: 252 ------LEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 305
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
AER ARE++ E KE L QL L ++ + + + +E M+ RH
Sbjct: 306 AERQAREQLAERKELLQEQLEQLQREYSRLKTSCQESARIEDMRKRH 352
Score = 31.2 bits (69), Expect(2) = 7e-29
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1771 EYSNSFLPQCGEVLPDIDTLLIHVTDCI 1854
E N P+C PD+DTL IHV +CI
Sbjct: 383 EPPNFCCPKCQYQAPDMDTLQIHVMECI 410
Score = 54.3 bits (129), Expect = 2e-07
Identities = 77/364 (21%), Positives = 142/364 (39%), Gaps = 33/364 (9%)
Frame = +2
Query: 188 ETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTE 367
E + G PT+ H + P + + L EN +L++A++ +NQ ++ R EEL +
Sbjct: 29 EESSLGKPTMLHLPSEQGAP----ETFQRCLEENQELRDAIRQSNQMLRERCEELQRFQG 84
Query: 368 KQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE 547
Q+EE+ F + EA+ + L S E L + R + +A
Sbjct: 85 SQREEKEFLMQKFCEARRLVERL--------------------SLEKL--ELRRQREQAL 122
Query: 548 QEVEQLKT------QVARLQAEKADLLGIVSELQLKLNSGGPSEDSF--------VEIRM 685
QEVE LKT A ++A+ LLG + E Q +L + + ++R
Sbjct: 123 QEVELLKTCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRVRATSEQVRQ 182
Query: 686 AEGEADAAMKEIKTSPGPIRTDS--------IDTSKSAEGTRN-----------YLEFEE 808
E E +A ++ +R S ++ ++E R + E++
Sbjct: 183 LENEREALQQQHSVQVDQLRLQSQSMEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDN 242
Query: 809 LTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXX 988
S + L L + Q++++ E AL AK+ ++D K+ ++
Sbjct: 243 HIKSSVGLQLEDLKQQLQQAEEAL-VAKQEVIDKLKEEAEQH------------------ 283
Query: 989 SPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE 1168
+ V V +L Q + Q + K+ LQE+ + L+R+ S + E
Sbjct: 284 --KIVMETVPVLKAQADIYKADFQAERQAREQLAERKELLQEQLEQLQREYSRLKTSCQE 341
Query: 1169 KQEL 1180
+
Sbjct: 342 SARI 345
>ref|XP_003360567.1| PREDICTED: NF-kappa-B essential modulator-like isoform 3 [Sus
scrofa].
Length = 320
Score = 52.0 bits (123), Expect(2) = 5e-10
Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 8/220 (3%)
Frame = +2
Query: 1049 KELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKL--ELQVESM 1222
+E QE + ++ M L+E+C+ L+R + E + ++L L +E +
Sbjct: 56 EENQELRDAIRQSNQM---LRERCEELQRFQGSQREEKEFLMQKFCEARRLVERLSLEKL 112
Query: 1223 RSEIKMEQAKTEEEKSKLTTLQLTHNR--LLQEYNNALKTIEELKRRESEKVDKVVLQEL 1396
+ EQA E E K Q+ ++ + + + L ++E + R + Q L
Sbjct: 113 ELRRQREQALQEVELLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKE--RQAL 170
Query: 1397 NGKLEMAEKALASKQLQMD---EMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
+ ++A+ +A QL + +K ++ E++ + ++Y +DF AER ARE
Sbjct: 171 ESRRKLAQLQVAYHQLFQEYDNHIKSSVVSSERN---------RADIYKADFQAERQARE 221
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
++ E KE L QL L ++ + + + +E M+ RH
Sbjct: 222 QLAERKELLQEQLEQLQREYSRLKTSCQESARIEDMRKRH 261
Score = 31.2 bits (69), Expect(2) = 5e-10
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1771 EYSNSFLPQCGEVLPDIDTLLIHVTDCI 1854
E N P+C PD+DTL IHV +CI
Sbjct: 292 EPPNFCCPKCQYQAPDMDTLQIHVMECI 319
>ref|XP_003358335.1| PREDICTED: myosin-10-like, partial [Sus scrofa].
Length = 1861
Score = 62.0 bits (149), Expect = 1e-09
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 22/239 (9%)
Frame = +2
Query: 1055 LQEAHTKLSEAELMKKRLQEKCQALERKNSATPSE---LNEKQELLYNNKKLELQVESMR 1225
+Q+ +L E E +++LQ + E K E L ++ KKL +E
Sbjct: 837 IQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKL---MEDRI 893
Query: 1226 SEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQELNGK 1405
+E + A+ EE+ L ++ ++ + LK EE R+E EK + +L+G+
Sbjct: 894 AECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKK-EEKTRQELEKAKR----KLDGE 948
Query: 1406 LEMAEKALASKQLQMDEMKQTIAKQEKDLE------------------TMAVLRAQMEVY 1531
+ +A Q Q+DE+K +AK+E++L+ + L+AQ+
Sbjct: 949 TTDLQDQIAELQAQIDELKIQVAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAEL 1008
Query: 1532 CSDFHAERAAREKIHEEKEQLALQLAVLLKD-DNAFEEGASRQSLMEMQSRHGARASDA 1705
DF +E+A+R K ++K L+ +L L + ++ + A++Q L + + A A
Sbjct: 1009 QEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKA 1067
Score = 53.1 bits (126), Expect = 5e-07
Identities = 103/552 (18%), Positives = 215/552 (38%), Gaps = 43/552 (7%)
Frame = +2
Query: 251 ELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLT 430
E LQ EL E +++ + Q ++ +L + E+++E + + K+ + +
Sbjct: 779 EQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAHIQ 838
Query: 431 ALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAE-------------------QE 553
L E +T + ++ K E E
Sbjct: 839 DLEEQLDEEEGARQKL------QLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKLMEDR 892
Query: 554 VEQLKTQVARLQAEKADLLGI-------VSELQLKLNSGGPSEDSFVEI-RMAEGEADAA 709
+ + +Q+A + + +L I +S+L+ +L + + R +GE
Sbjct: 893 IAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKLDGETTDL 952
Query: 710 MKEIKTSPGPIRTDSIDTSKSAEGTRNYL---EFEELTVSQLLLCLREGNQKVERLEIAL 880
+I I I +K E + L + E L + L +RE ++ L+
Sbjct: 953 QDQIAELQAQIDELKIQVAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAELQEDF 1012
Query: 881 KEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQ 1060
+ K EK+ +D S + + + ++ E +V L K L+
Sbjct: 1013 ESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQ---EVAELKKALE 1069
Query: 1061 EAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKM 1240
E TK EA++ R Q ALE + K L N + LE + + E+K+
Sbjct: 1070 E-ETKNHEAQIQDMR-QRHAAALEELSEQLEQAKRFKANLEKNKQGLETDNKELACEVKV 1127
Query: 1241 EQ---AKTEEEKSKL-TTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKV--VLQELNG 1402
Q A++E ++ KL +Q H ++ + ++ E+ + ++E +D V +L+E
Sbjct: 1128 LQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNE-LDNVSTLLEEAEK 1186
Query: 1403 KLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREKIHE- 1579
K K AS + Q+ + ++ + ++ + ++ Q+E + ++ E+ +
Sbjct: 1187 KGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKN 1246
Query: 1580 -EKEQLALQLAVL-----LKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAE 1741
EK+ LALQ + + DD EG ++ ++ A + +++A + +
Sbjct: 1247 LEKQVLALQAQLTDTKKKVDDDVGTIEGL-EEAKKKLLKDAEALSQRLEEKALAYDKLEK 1305
Query: 1742 DRNWLQQQQQNI 1777
+N LQQ+ ++
Sbjct: 1306 TKNRLQQELDDL 1317
Score = 52.0 bits (123), Expect = 1e-06
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 25/218 (11%)
Frame = +2
Query: 1028 LQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLEL 1207
LQVT +ELQ +L + + + +++ + + +ERK+ E N E L +L
Sbjct: 730 LQVTRQEEELQAKDEELLKVKEKQTKVEGELEEMERKHQQLLEEKNILAEQLQAETELFA 789
Query: 1208 QVESMRSEIKME-----------QAKTEEEKSKLTTLQLTHNRL---LQEYNNALKTIEE 1345
+ E MR+ + + +++ EEE+ + LQ ++ +Q+ L EE
Sbjct: 790 EAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAHIQDLEEQLD--EE 847
Query: 1346 LKRRESEKVDKVVLQELNGKLE--------MAEKALASKQLQMD---EMKQTIAKQEKDL 1492
R+ +++KV + K+E K + K+L D E +A++E+
Sbjct: 848 EGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKLMEDRIAECSSQLAEEEEKA 907
Query: 1493 ETMAVLRAQMEVYCSDFHAERAAREKIHEEKEQLALQL 1606
+ +A +R + EV SD EK +E E+ +L
Sbjct: 908 KNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKL 945
Score = 52.0 bits (123), Expect = 1e-06
Identities = 121/531 (22%), Positives = 211/531 (39%), Gaps = 48/531 (9%)
Frame = +2
Query: 215 LAHPNLDTFTPHELLQQMRELLIE-NHQLKEAMKLNNQAMKGRFEELSAWTEK------Q 373
LA+ L+ T + L Q++ +LL++ +HQ + L + K F++L A + +
Sbjct: 1298 LAYDKLEK-TKNRLQQELDDLLVDLDHQRQIVSNLEKKQKK--FDQLLAEEKNISARYAE 1354
Query: 374 KEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRS-FEDLTGDP--------- 523
+ +R E + KE K A + R+ EDL
Sbjct: 1355 ERDRAEAEAREKETKALSLARALEEALEAKDEFERQNKQLRADMEDLMSSKDDVGKNVHE 1414
Query: 524 -RVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEA 700
K EQ+VE+++TQ+ L+ D L + +L+L E+ M +A
Sbjct: 1415 LEKSKRALEQQVEEMRTQLEELE----DELQATEDAKLRL-----------EVNMQAMKA 1459
Query: 701 DAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVERLEIA 877
++++T D + K + E E EL + L ++K ++EI
Sbjct: 1460 QFE-RDLQT------RDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKK--KMEID 1510
Query: 878 LKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKEL 1057
LK+ + +I + KA+D + E+E +F +
Sbjct: 1511 LKDLEAQI-EAANKARDE---------VIKQLRKLQAQMKDYQRELEEARASRDEIFAQS 1560
Query: 1058 QEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-----------KQELLYNNKKLE 1204
+E+ KL E +LQE+ + ER E +E K LL ++LE
Sbjct: 1561 KESEKKLKSLEAEILQLQEELASSERARRHAEQERDELADEIANSASGKSALLDEKRRLE 1620
Query: 1205 LQVESMRSEIKMEQAKTE--EEKSKLTTLQL-THNRLLQEYNNALKTIEELKRR--ESEK 1369
++ + E++ EQ+ E ++ + TTLQ+ T N L +A + + +++ K
Sbjct: 1621 ARIAQLEEELEEEQSNMELLNDRFRKTTLQVDTLNAELAAERSAAQKSDNARQQLERQNK 1680
Query: 1370 VDKVVLQELNG----KLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQ------ 1519
K LQEL G K + AL +K Q++E + AK E+ V R +
Sbjct: 1681 ELKAKLQELEGAVKSKFKATISALEAKIGQLEEQLEQEAK-ERAAANKLVRRTEKKLKEI 1739
Query: 1520 -MEVYCSDFHAE--RAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSL 1663
M+V HA+ + EK + +QL QL ++ A ASR+ L
Sbjct: 1740 FMQVEDERRHADQYKEQMEKANARMKQLKRQLEE--AEEEATRANASRRKL 1788
>ref|XP_003130443.2| PREDICTED: centromere protein F, partial [Sus scrofa].
Length = 3003
Score = 62.0 bits (149), Expect = 1e-09
Identities = 102/487 (20%), Positives = 193/487 (39%), Gaps = 25/487 (5%)
Frame = +2
Query: 323 QAMKGRFEELSAWTEKQKEERLFFETQSKEA-KERLTALSXXXXXXXXXXXXXXXXXXRS 499
Q +K E+LS + + R E + KE KE LS RS
Sbjct: 362 QKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQ---------------RS 406
Query: 500 FEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKL----NSGGPSEDS 667
F+ L + KA+ QE++Q K LQAE + I ++L+ L G +E +
Sbjct: 407 FQTLDQECTQMKAKLTQELQQAKNTRNILQAELDKVTSIKNQLEKNLEEFKQKFGRTEQA 466
Query: 668 FVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREG 847
+ E E + +E+K R +S+ S+S + R EE + ++ CL +
Sbjct: 467 LQASQTKEHELRRSTEEMK------RENSLVKSQSEQRAREVHHLEE-ELKKVKQCLSQS 519
Query: 848 NQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLN 1027
E ++ + + D ++K S + +E L
Sbjct: 520 QSFAEEMKAKNTSQETMLRDLQEK----------------------ISQQENSLTLEKLK 557
Query: 1028 LQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQ---ELLYNNKK 1198
L + L K+ + L + E ++L EK ER++ A + L K+ E L K
Sbjct: 558 LALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEALLNALEIKKKEYEELKEEKT 617
Query: 1199 L----ELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
L + + E + ++++ E+ + + + L T T EYN ++T+E + S
Sbjct: 618 LFSHWKSEHEQLLNQLESEKESLQNKINHLETCLKTQQIKSHEYNERVRTLEMERENLSV 677
Query: 1367 KVDKV--VLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAV----------- 1507
++ + V+ + E ++A Q + + Q K EK++E M +
Sbjct: 678 EIRNLHNVIDSKTAEAETQKRAYGELQQKAEFSDQ---KHEKEIENMCLKISQLTGQVED 734
Query: 1508 LRAQMEVYCSDFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHG 1687
L ++++ S+ + + +H E E +L+ + +D A A ++SL+ + +
Sbjct: 735 LEHKLQLLSSEIRDKDQRYQDLHTESE--SLRDLLKSRDSLAVTNKAPQRSLLGFEQQSA 792
Query: 1688 ARASDAD 1708
S A+
Sbjct: 793 MNNSFAN 799
Score = 50.8 bits (120), Expect = 3e-06
Identities = 123/519 (23%), Positives = 208/519 (40%), Gaps = 30/519 (5%)
Frame = +2
Query: 344 EELSAWTEKQKEERLFFETQSKEAKE--RLTALSXXXXXXXXXXXXXXXXXXRSFEDLTG 517
EELS T ++ R +T SKE KE +L+ + L
Sbjct: 1947 EELSVVTRERDRLREDLDTLSKENKELDQLSEKMKEKIGELESLQGERLHLQEQLQRLEE 2006
Query: 518 DPR---VPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQL-KLNSGGPSEDSFVEIRM 685
D + + ++E E ++ QL + L E L G +SEL+ KL E + +E
Sbjct: 2007 DSQALSLVRSELENQIGQLNKEKDSLIRESESLQGKLSELEREKLTIAKALEAALME--- 2063
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQ---- 853
+GE + + +R K E + +E +E + LRE +
Sbjct: 2064 -KGEVAVRLSSTQEEVHQLR-------KGIEKLQVRIEADEKKQLHVSEKLRESERRNDA 2115
Query: 854 ---KVERLEIALKEAKER----ILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSE 1012
KVE LE L+ A+E ILD E + +T+ ++
Sbjct: 2116 LQDKVENLERELQMAEENQELVILDAENSKAE---------------------VDTLKTQ 2154
Query: 1013 VEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNN 1192
+E++ + TL +L T SE E + K+LQEK +++E LL +
Sbjct: 2155 IELMTESLKTLELDLV---TTQSEKETLTKQLQEK-----------QGQVSELDTLLSSL 2200
Query: 1193 KKLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKV 1372
K L E + ++K EE K+ + LQ T + L E AL +E + + + +
Sbjct: 2201 KNLLEGKEQEKIQMK------EESKAAVEMLQ-TQLKELTEEVAALCKDQETWKAQGQSL 2253
Query: 1373 DKVVLQELN------GKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYC 1534
D V QE++ GKL++ +A KQL + E K ++ DL V + E+
Sbjct: 2254 DSPV-QEIHQLRCGIGKLKVHREADEKKQLHILE-KLKESEHHADLLKDRVKNLERELEV 2311
Query: 1535 SDFHAERA--AREKIHEEKEQLAL---QLAVLLKDD--NAFEEGASRQSLMEMQSRHGAR 1693
S + E A EK E E L ++A L+D + + +Q LM+ + R
Sbjct: 2312 SGKNQEHAILEAEKSKAEVETLEAKIEEMAQNLRDSELDLVNIRSEKQDLMKELQKEQGR 2371
Query: 1694 ASDADQQAFLVXRGAEDRNWLQQQQQNIPIHSCPNVERF 1810
S+ ++ + +D+ +Q+++ + S VE F
Sbjct: 2372 VSELEKLNSSFEKLLQDK---EQEKEQMKEDSKAAVEMF 2407
>ref|XP_003358845.1| PREDICTED: golgin subfamily B member 1-like [Sus scrofa].
Length = 3050
Score = 60.8 bits (146), Expect = 3e-09
Identities = 96/474 (20%), Positives = 188/474 (39%), Gaps = 61/474 (12%)
Frame = +2
Query: 512 TGDPRVPKAEAEQEVEQLKTQVARLQAEKA---DLLGIVSELQLKLNSGGPSEDSFVEIR 682
TG+ E Q EQ+ Q +Q+ KA + L+ KL S ++
Sbjct: 1119 TGELTKKAEEVFQLQEQINKQDLEIQSLKAASHEAEAHAESLRQKLESSQLEIAGLEHLK 1178
Query: 683 MAEGEADAAMK-------EIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLR 841
+ E D K E+K G + + +K R+ + + +QL + +
Sbjct: 1179 ELQPELDELQKLISKKEEEVKYLSGQLSEKEMALTKVQAEIRDQEDLMKALRTQLEMQAK 1238
Query: 842 EGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEM 1021
E ++++++L++ L E K++ + ++ K + + + E+ +
Sbjct: 1239 EHDERLKQLQLELCEMKQKPDETGEETKAKQQIQRKLQAALISRKEALKENKGLQEELSL 1298
Query: 1022 LNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELN----EKQELLYN 1189
+ L K L + ++S K K L+ + +E++ E Q L +
Sbjct: 1299 AREAIEHLTKSLADLENQVSAQNTEKDTFLGKLALLQEERDKLIAEMDRSLMENQSLNGS 1358
Query: 1190 NKKLELQVESMRSEIKMEQAKTEEEK----SKLTTLQLTHNRLLQEYNNALKTIEELKRR 1357
+ L+L +E + + + + E K ++ T Q H L +EY L++ E +
Sbjct: 1359 CESLKLALEGLTEDKENLVKEIESLKCSKIAESTEWQEKHKELQKEYEILLQSYENVSN- 1417
Query: 1358 ESEKVDKVV------LQELNGKL-------EMAEKALASKQLQMDEMKQTI-----AKQE 1483
E+E++ VV QEL GKL + EK L + +M+EMK+ + +KQ+
Sbjct: 1418 EAERIQHVVETVRQEKQELYGKLRSLEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQ 1477
Query: 1484 KDLETMAV---LRAQ-----------MEVYCSDFHAERAAREKIHEEKEQLALQLAVLLK 1621
K LE LRA+ ME S + E++ E + L+ + VL+
Sbjct: 1478 KILELEEENDRLRAEVPPAGGIPKDSMEALLSSNSDMKEELERVKTEYKTLSKEFEVLMT 1537
Query: 1622 DDNA-----------FEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAEDRN 1750
+ ++ E S+Q+ E +HG + ++ V A++++
Sbjct: 1538 EKDSLSKEVQDLKHQIEGNVSKQASQEATEKHGNQIDVVEKATQSVPEEADEQD 1591
Score = 57.0 bits (136), Expect = 4e-08
Identities = 104/522 (19%), Positives = 216/522 (41%), Gaps = 34/522 (6%)
Frame = +2
Query: 167 EKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFE 346
EK ++ ++T+ P +++ T E + +++ ++E K A+ LN+ + E
Sbjct: 230 EKLETASQTSS---PDVSNEGTQAVT-EESIAFLQKRVVELENEKGALLLNSTEL----E 281
Query: 347 ELSAWTEKQKEERLFFETQSK--EAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGD 520
EL A EK + E Q + EA ++ +S S E+ +
Sbjct: 282 ELKAENEKLSSQITLLEAQKRTSEADREVSEISMVDITRLNKSSC-------SAEE--SE 332
Query: 521 PRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEA 700
P V + Q+ ++L + ++ + ++ + S+LQ K G P E++ E E
Sbjct: 333 PDVLENTFSQKHKELSVLLLEMKEAQEEIAFLKSQLQGKRAEGDPEVIDQKEMKQIESEG 392
Query: 701 DAAMKEIKT--------SPGPIRTDSID-TSKSAEGTRNYLE--FEELTVSQLLLCLREG 847
+K P P S+ T K + + Y EE+ +S + L+
Sbjct: 393 IPPVKMTVLLEDTGQHFPPVPDEESSLPITEKEEQMSTKYQHRTSEEIPLSDARMELKSA 452
Query: 848 NQKVERL------------EIALKEAKERILDFEKKA-KDRSXXXXXXXXXXXXXXXXXX 988
Q E + L+ K +IL+ E K
Sbjct: 453 KQDDEDKAPSAVPAICQCHQDELERLKCQILELETNLHKAEEIHEKNLDEKAKEIGSLTQ 512
Query: 989 SPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE 1168
E E N T L +E + +++ E ++ + L+ + Q LE +E
Sbjct: 513 LIEEFKKNAENTNSAFTALSQERDQLLSQVKELSVVTE-LRSQVQQLE----VNLAEAER 567
Query: 1169 KQELLYNNKK-----LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALK 1333
++ L Y N+ L Q+ S+ E K + K E +++L +Q+ + E +K
Sbjct: 568 QRRLDYENQTAHQNLLTEQIHSLSIETKSKDVKIEVLQNELDDVQVQFS----EQTTLIK 623
Query: 1334 TIE-ELKRRESEKVDKVV-LQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAV 1507
+++ +L+++ESE ++ +++++ K+E +AL+ K+L++ M Q + +++KD+ET+
Sbjct: 624 SLQSQLQKKESEVLEGAERVRDISNKVEELSQALSQKELEIATMDQLLLQKKKDVETLQQ 683
Query: 1508 LRAQMEVYCSDFHAERAAR-EKIHEEKEQLALQLAVLLKDDN 1630
+ + ++ + +++EEK L +++ L + N
Sbjct: 684 TIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLKEQLN 725
>ref|XP_003132694.2| PREDICTED: golgin subfamily B member 1-like [Sus scrofa].
Length = 2259
Score = 60.8 bits (146), Expect = 3e-09
Identities = 96/474 (20%), Positives = 188/474 (39%), Gaps = 61/474 (12%)
Frame = +2
Query: 512 TGDPRVPKAEAEQEVEQLKTQVARLQAEKA---DLLGIVSELQLKLNSGGPSEDSFVEIR 682
TG+ E Q EQ+ Q +Q+ KA + L+ KL S ++
Sbjct: 1332 TGELTKKAEEVFQLQEQINKQDLEIQSLKAASHEAEAHAESLRQKLESSQLEIAGLEHLK 1391
Query: 683 MAEGEADAAMK-------EIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLR 841
+ E D K E+K G + + +K R+ + + +QL + +
Sbjct: 1392 ELQPELDELQKLISKKEEEVKYLSGQLSEKEMALTKVQAEIRDQEDLMKALRTQLEMQAK 1451
Query: 842 EGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEM 1021
E ++++++L++ L E K++ + ++ K + + + E+ +
Sbjct: 1452 EHDERLKQLQLELCEMKQKPDETGEETKAKQQIQRKLQAALISRKEALKENKGLQEELSL 1511
Query: 1022 LNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELN----EKQELLYN 1189
+ L K L + ++S K K L+ + +E++ E Q L +
Sbjct: 1512 AREAIEHLTKSLADLENQVSAQNTEKDTFLGKLALLQEERDKLIAEMDRSLMENQSLNGS 1571
Query: 1190 NKKLELQVESMRSEIKMEQAKTEEEK----SKLTTLQLTHNRLLQEYNNALKTIEELKRR 1357
+ L+L +E + + + + E K ++ T Q H L +EY L++ E +
Sbjct: 1572 CESLKLALEGLTEDKENLVKEIESLKCSKIAESTEWQEKHKELQKEYEILLQSYENVSN- 1630
Query: 1358 ESEKVDKVV------LQELNGKL-------EMAEKALASKQLQMDEMKQTI-----AKQE 1483
E+E++ VV QEL GKL + EK L + +M+EMK+ + +KQ+
Sbjct: 1631 EAERIQHVVETVRQEKQELYGKLRSLEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQ 1690
Query: 1484 KDLETMAV---LRAQ-----------MEVYCSDFHAERAAREKIHEEKEQLALQLAVLLK 1621
K LE LRA+ ME S + E++ E + L+ + VL+
Sbjct: 1691 KILELEEENDRLRAEVPPAGGIPKDSMEALLSSNSDMKEELERVKTEYKTLSKEFEVLMT 1750
Query: 1622 DDNA-----------FEEGASRQSLMEMQSRHGARASDADQQAFLVXRGAEDRN 1750
+ ++ E S+Q+ E +HG + ++ V A++++
Sbjct: 1751 EKDSLSKEVQDLKHQIEGNVSKQASQEATEKHGNQIDVVEKATQSVPEEADEQD 1804
Score = 57.0 bits (136), Expect = 4e-08
Identities = 104/522 (19%), Positives = 216/522 (41%), Gaps = 34/522 (6%)
Frame = +2
Query: 167 EKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFE 346
EK ++ ++T+ P +++ T E + +++ ++E K A+ LN+ + E
Sbjct: 443 EKLETASQTSS---PDVSNEGTQAVT-EESIAFLQKRVVELENEKGALLLNSTEL----E 494
Query: 347 ELSAWTEKQKEERLFFETQSK--EAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGD 520
EL A EK + E Q + EA ++ +S S E+ +
Sbjct: 495 ELKAENEKLSSQITLLEAQKRTSEADREVSEISMVDITRLNKSSC-------SAEE--SE 545
Query: 521 PRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEA 700
P V + Q+ ++L + ++ + ++ + S+LQ K G P E++ E E
Sbjct: 546 PDVLENTFSQKHKELSVLLLEMKEAQEEIAFLKSQLQGKRAEGDPEVIDQKEMKQIESEG 605
Query: 701 DAAMKEIKT--------SPGPIRTDSID-TSKSAEGTRNYLE--FEELTVSQLLLCLREG 847
+K P P S+ T K + + Y EE+ +S + L+
Sbjct: 606 IPPVKMTVLLEDTGQHFPPVPDEESSLPITEKEEQMSTKYQHRTSEEIPLSDARMELKSA 665
Query: 848 NQKVERL------------EIALKEAKERILDFEKKA-KDRSXXXXXXXXXXXXXXXXXX 988
Q E + L+ K +IL+ E K
Sbjct: 666 KQDDEDKAPSAVPAICQCHQDELERLKCQILELETNLHKAEEIHEKNLDEKAKEIGSLTQ 725
Query: 989 SPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE 1168
E E N T L +E + +++ E ++ + L+ + Q LE +E
Sbjct: 726 LIEEFKKNAENTNSAFTALSQERDQLLSQVKELSVVTE-LRSQVQQLE----VNLAEAER 780
Query: 1169 KQELLYNNKK-----LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALK 1333
++ L Y N+ L Q+ S+ E K + K E +++L +Q+ + E +K
Sbjct: 781 QRRLDYENQTAHQNLLTEQIHSLSIETKSKDVKIEVLQNELDDVQVQFS----EQTTLIK 836
Query: 1334 TIE-ELKRRESEKVDKVV-LQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAV 1507
+++ +L+++ESE ++ +++++ K+E +AL+ K+L++ M Q + +++KD+ET+
Sbjct: 837 SLQSQLQKKESEVLEGAERVRDISNKVEELSQALSQKELEIATMDQLLLQKKKDVETLQQ 896
Query: 1508 LRAQMEVYCSDFHAERAAR-EKIHEEKEQLALQLAVLLKDDN 1630
+ + ++ + +++EEK L +++ L + N
Sbjct: 897 TIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLKEQLN 938
>ref|XP_003356754.1| PREDICTED: myosin-7-like [Sus scrofa].
Length = 973
Score = 60.1 bits (144), Expect = 4e-09
Identities = 108/523 (20%), Positives = 208/523 (39%), Gaps = 45/523 (8%)
Frame = +2
Query: 242 TPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKE 421
T H L ++ +L+++ + A ++ + + L+ W +K +E + E+ KEA+
Sbjct: 455 TKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARS 514
Query: 422 RLTAL--SXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAE 595
T L ++ ++ D + + + +L+ +L+AE
Sbjct: 515 LSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAE 574
Query: 596 KADLLGIVSELQLKL-NSGGPSEDSFVEIRMAE-------GEADAAMKEIKTSPGPIRTD 751
K +L + E + L + G + +E + E D M++ K + + D
Sbjct: 575 KLELQSALEEAEASLEHEEGKILRAQLEFNQIKAEMERKLAEKDEEMEQAKRNHLRV-VD 633
Query: 752 SIDTSKSAEGTRNYLEFEELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDR 931
S+ TS AE TR+ E L V + + EG+ + +EI L A + +K+ K
Sbjct: 634 SLQTSLDAE-TRS--RNEALRVKKKM----EGD--LNEMEIQLSHANRMAAEAQKQVKSL 684
Query: 932 SXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQ------EAHTKLSEAEL 1093
+ + VE N + +EL+ E KL+E EL
Sbjct: 685 QSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLAEQEL 744
Query: 1094 MKKRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIK--MEQAKTEEEK 1267
++ E+ Q L +N++ L+ KK+E + +++E++ +++ + EEK
Sbjct: 745 IE--TSERVQLLHSQNTS----------LINQKKKMEADLSQLQTEVEEAVQECRNAEEK 792
Query: 1268 SK------------LTTLQLTHNRLLQEYNNALKTIEELKRRESE------KVDKVVLQE 1393
+K L Q T L + N +TI++L+ R E K K LQ+
Sbjct: 793 AKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQK 852
Query: 1394 LNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMA---------VLRAQMEVYCSDFH 1546
L ++ E L ++Q + E + + K E+ ++ + +LR Q V
Sbjct: 853 LEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLK 912
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQ 1675
+A + + E +EQ L+ K + +E R + E Q
Sbjct: 913 V-KAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQ 954
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,158,159
Number of extensions: 1132037
Number of successful extensions: 5859
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5608
Number of HSP's successfully gapped: 74
Length of query: 662
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 557
Effective length of database: 8,729,747
Effective search space: 4862469079
Effective search space used: 4862469079
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012815
(1986 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_862896.1| optineurin [Mus musculus]. 781 0.0
Alignment gi|NP_001129539.1| NF-kappa-B essential modulator isoform 3 [Mu... 114 5e-28
Alignment gi|NP_001154893.1| NF-kappa-B essential modulator isoform 4 [Mu... 114 5e-28
Alignment gi|NP_001154894.1| NF-kappa-B essential modulator isoform 5 [Mu... 114 5e-28
Alignment gi|NP_001154895.1| NF-kappa-B essential modulator isoform 1 [Mu... 114 5e-28
Alignment gi|NP_034677.2| NF-kappa-B essential modulator isoform 1 [Mus m... 114 5e-28
Alignment gi|NP_001154896.1| NF-kappa-B essential modulator isoform 2 [Mu... 114 5e-28
Alignment gi|NP_848705.1| NF-kappa-B essential modulator isoform 2 [Mus m... 114 5e-28
Alignment gi|NP_061218.2| Golgin subfamily A member 4 [Mus musculus]. 65 2e-10
Alignment gi|NP_082297.1| myosin-14 [Mus musculus]. 65 3e-10
>ref|NP_862896.1| optineurin [Mus musculus].
Length = 584
Score = 781 bits (2016), Expect(2) = 0.0
Identities = 415/564 (73%), Positives = 457/564 (81%), Gaps = 11/564 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEKGDSP ET GNGP + HP+LDTFTP ELLQQM+ELL+ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKGDSPCETPGNGPSNMVHPSLDTFTPEELLQQMKELLVENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEERL FE QSKE KERL AL+ +
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERLLFEMQSKEVKERLKALTHENERLKEELGKFKEKSEK 120
Query: 497 SFEDLTGDPRVPKA----------EAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNS 646
EDLTG R P+A + EQEVE LK QV RL+AEKADLLGIVSELQLKLNS
Sbjct: 121 PLEDLTGGYRYPRALEEEVEKLKTQVEQEVEHLKIQVMRLRAEKADLLGIVSELQLKLNS 180
Query: 647 GGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEELTVSQL 826
GG SEDSFVEIRM EGE + AMKE+K P P RTD I S E R+ EFEELTVSQL
Sbjct: 181 GGSSEDSFVEIRMTEGETEGAMKEMKNCPTPTRTDPISLSNCTEDARSCAEFEELTVSQL 240
Query: 827 LLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVG 1006
LLCLREGNQKVERLE+AL+EAKERI DFEKKA S E+VG
Sbjct: 241 LLCLREGNQKVERLEVALREAKERISDFEKKANGHSSTEKQTARRADREKEDKGQ-ESVG 299
Query: 1007 SEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLY 1186
SEVE L++QVT+LFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQEL+Y
Sbjct: 300 SEVETLSIQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELVY 359
Query: 1187 NNKKLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+NKKLELQVESMRSEIKMEQAKTEEEKS+L TLQ THN+LLQE+N ALKTIEEL ++++E
Sbjct: 360 SNKKLELQVESMRSEIKMEQAKTEEEKSRLATLQATHNKLLQEHNKALKTIEELTKQQAE 419
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
KVDK++LQEL+ KLE+AE+ALASKQLQMDEMKQT+AKQE+DLETMAVLRAQMEVYCSDFH
Sbjct: 420 KVDKMLLQELSEKLELAEQALASKQLQMDEMKQTLAKQEEDLETMAVLRAQMEVYCSDFH 479
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLV 1726
AERAAREKIHEEKEQLALQLA+LLK++N EEG SRQSLMEMQ RHGAR SD+DQQ +L
Sbjct: 480 AERAAREKIHEEKEQLALQLAILLKENNDIEEGGSRQSLMEMQCRHGARTSDSDQQTYLF 539
Query: 1727 XRGAEDRNWLQ-QQQQNIPIHSCP 1795
RGAEDR+W QQ ++IPIHSCP
Sbjct: 540 QRGAEDRSWQHGQQPRSIPIHSCP 563
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 563 PKCGEVLPDIDTLQIHVMDCII 584
>ref|NP_001129539.1| NF-kappa-B essential modulator isoform 3 [Mus musculus].
Length = 430
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 163 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 222
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 223 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 271
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 272 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 331
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 332 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 371
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 409 PKCQYQAPDMDTLQIHVMECI 429
Score = 57.4 bits (137), Expect = 4e-08
Identities = 99/420 (23%), Positives = 174/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 33 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 88
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 89 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 128
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 129 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 173
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 174 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 227
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 228 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 254
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 255 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 313
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 314 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 373
>ref|NP_001154893.1| NF-kappa-B essential modulator isoform 4 [Mus musculus].
Length = 429
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 162 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 221
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 222 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 270
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 271 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 330
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 331 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 370
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 408 PKCQYQAPDMDTLQIHVMECI 428
Score = 55.1 bits (131), Expect = 2e-07
Identities = 99/420 (23%), Positives = 175/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 33 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 88
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 89 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 128
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK + ++ +KA + V+ L E++
Sbjct: 129 KL--DLRSQREQALKELEQLK-KCQQMAEDKASVKAQVTSL-------------LGELQE 172
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 173 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 226
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 227 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 253
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 254 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 312
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 313 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 372
>ref|NP_001154894.1| NF-kappa-B essential modulator isoform 5 [Mus musculus].
Length = 424
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 157 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 216
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 217 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 265
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 266 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 325
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 326 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 365
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 403 PKCQYQAPDMDTLQIHVMECI 423
Score = 57.4 bits (137), Expect = 4e-08
Identities = 99/420 (23%), Positives = 174/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 27 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 82
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 83 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 122
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 123 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 167
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 168 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 221
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 222 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 248
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 249 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 307
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 308 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 367
>ref|NP_001154895.1| NF-kappa-B essential modulator isoform 1 [Mus musculus].
Length = 412
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 145 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 204
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 205 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 253
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 254 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 313
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 314 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 353
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 391 PKCQYQAPDMDTLQIHVMECI 411
Score = 57.4 bits (137), Expect = 4e-08
Identities = 99/420 (23%), Positives = 174/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 111 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 155
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 156 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 209
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 210 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 236
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 237 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 295
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 296 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 355
>ref|NP_034677.2| NF-kappa-B essential modulator isoform 1 [Mus musculus].
Length = 412
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 145 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 204
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 205 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 253
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 254 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 313
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 314 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 353
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 391 PKCQYQAPDMDTLQIHVMECI 411
Score = 57.4 bits (137), Expect = 4e-08
Identities = 99/420 (23%), Positives = 174/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK ++ +KA + V+ L E++
Sbjct: 111 KL--DLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSL-------------LGELQE 155
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 156 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 209
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 210 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 236
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 237 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 295
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 296 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 355
>ref|NP_001154896.1| NF-kappa-B essential modulator isoform 2 [Mus musculus].
Length = 411
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 144 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 203
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 204 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 252
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 253 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 312
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 313 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 352
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 390 PKCQYQAPDMDTLQIHVMECI 410
Score = 55.1 bits (131), Expect = 2e-07
Identities = 99/420 (23%), Positives = 175/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK + ++ +KA + V+ L E++
Sbjct: 111 KL--DLRSQREQALKELEQLK-KCQQMAEDKASVKAQVTSL-------------LGELQE 154
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 155 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 208
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 209 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 235
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 236 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 294
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 295 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 354
>ref|NP_848705.1| NF-kappa-B essential modulator isoform 2 [Mus musculus].
Length = 411
Score = 114 bits (284), Expect(2) = 5e-28
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNE-KQELLYNNKKLEL 1207
QVT+L ELQE+ ++L A ++ L+ + +A+ + SE +Q+ +L +
Sbjct: 144 QVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRM 203
Query: 1208 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVL 1387
Q +S+ + ++ME+ EEK KL LQ +++L Q+Y++ +K+ + ++ L
Sbjct: 204 QNQSVEAALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQ-----------L 252
Query: 1388 QELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAARE 1567
++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF AER ARE
Sbjct: 253 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 312
Query: 1568 KIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
K+ E+KE L QL L ++ N + G + +E M+ RH
Sbjct: 313 KLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRH 352
Score = 30.4 bits (67), Expect(2) = 5e-28
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 390 PKCQYQAPDMDTLQIHVMECI 410
Score = 55.1 bits (131), Expect = 2e-07
Identities = 99/420 (23%), Positives = 175/420 (41%), Gaps = 13/420 (3%)
Frame = +2
Query: 146 QPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQ 325
QP E D E + G P + H + TP E LQ+ E EN +L++A++ +NQ
Sbjct: 15 QPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTP-ETLQRCLE---ENQELRDAIRQSNQ 70
Query: 326 AMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFE 505
++ R EEL + Q+EE+ F + +EA++ + L S E
Sbjct: 71 MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERL--------------------SLE 110
Query: 506 DLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRM 685
L D R + +A +E+EQLK + ++ +KA + V+ L E++
Sbjct: 111 KL--DLRSQREQALKELEQLK-KCQQMAEDKASVKAQVTSL-------------LGELQE 154
Query: 686 AEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVE 862
++ +AA K+ + G IR S + + E R L+ + + V Q LR NQ V
Sbjct: 155 SQSRLEAATKDRQALEGRIRAVS-EQVRQLESEREVLQQQHSVQVDQ----LRMQNQSV- 208
Query: 863 RLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTT 1042
E AL+ ER E+K K + L
Sbjct: 209 --EAALR--MERQAASEEKRK-----------------------------LAQLQAAYHQ 235
Query: 1043 LFKELQEAHTKLS---EAELMKKRLQEKCQALERKN---SATPSELNEKQELLYNNKKLE 1204
LF++ ++H K S + E ++++LQ+ +AL K E + + ++ L+
Sbjct: 236 LFQD-YDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 294
Query: 1205 LQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYN------NALKTIEELKRRESE 1366
Q + +++ + E+ E+ K LQ +L +E+N + IE++++R E
Sbjct: 295 AQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMRKRHVE 354
>ref|NP_061218.2| Golgin subfamily A member 4 [Mus musculus].
Length = 2238
Score = 65.1 bits (157), Expect = 2e-10
Identities = 126/593 (21%), Positives = 226/593 (38%), Gaps = 35/593 (5%)
Frame = +2
Query: 35 QRLHPGPEPFPSRQDAEEAVTPREVGSRAPGTAAMSHQPLSCLTEKGDSPTETTGNGPP- 211
QRL GP DA + + P E+ + G TEK + E G G
Sbjct: 254 QRLQNGP----MNVDAPKPLPPGELQAEVHGD-----------TEKMEGVGEPVGGGTSA 298
Query: 212 -TLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKE--- 379
TL LLQ+ +E + + + + +A++ + +E EK KE
Sbjct: 299 KTLEMLQQRVKRQENLLQRCKETIGSHKEQCALLLSEKEALQEQLDERLQELEKMKELHM 358
Query: 380 -ERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEV 556
E+ TQ ++AK + L ED A+ +
Sbjct: 359 AEKTKLITQLRDAKNLIEQLEQDKGMVITETKRQMLETLELKEDEI-------AQLRSHI 411
Query: 557 EQLKTQVARL--QAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTS 730
+Q+ TQ L Q EK++ EL+ L++ +ED+ ++M E D MK ++
Sbjct: 412 KQMTTQGEELREQKEKSERAAF-EELEKALSTAQKTEDAQRRMKM---EMDEQMKAVE-- 465
Query: 731 PGPIRTDSIDTSKSAEGTRNYLEFEELTVSQLLLCLREGN--------QKVERLEIALKE 886
+++E R L+ E V Q + + N QK+ E+A KE
Sbjct: 466 ------------RASEEERLRLQHELSRVRQEAASMAKKNSEEQVAALQKLHAEELASKE 513
Query: 887 AK-ERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQE 1063
+ R L+ ++ + +E L LQ + L E
Sbjct: 514 QELSRRLEARERELQEQMRIALEKSRSEYLKLTQEKEQQESLALEELELQKKAI---LTE 570
Query: 1064 AHTKL----SEAELMKKRLQEKCQALER--KNSATPSE---LNEKQELLYNNKKLELQVE 1216
+ KL EAE + R+ E +LE+ + S T SE ++ + E +NK+L E
Sbjct: 571 SENKLQELGQEAEAYRTRILELETSLEKSLQESKTQSEHLAVHLEAEKNKHNKELTALAE 630
Query: 1217 SMRSEIK-MEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKVVLQE 1393
R+E++ ++Q + +L +L H ++E + ++ +E E + + +Q+
Sbjct: 631 QHRTEVEGLQQQQDSLWTERLQSLSQQHQAAVEELREKYQQEKDALLKEKESLFQAHIQD 690
Query: 1394 LNGK-LEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERAAREK 1570
+N K LE +K + E+ + + +++ E ++VLR + AE + +
Sbjct: 691 MNEKTLEKLDKKQMELESVSSELSEALRARDQLAEELSVLRGDADKMKQALEAELEEQRR 750
Query: 1571 IHE-------EKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDAD 1708
H+ E+++L ++ A D GA E AR D +
Sbjct: 751 HHQREVGSISEQQELTVRRAEKALKDELSRLGALLDERDEHLRERQARVQDLE 803
Score = 53.1 bits (126), Expect = 8e-07
Identities = 97/488 (19%), Positives = 194/488 (39%), Gaps = 12/488 (2%)
Frame = +2
Query: 251 ELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLF--FETQSKEAKER 424
E L+ EL + K N++ ++L A KE+ L E + +E +E+
Sbjct: 471 ERLRLQHELSRVRQEAASMAKKNSEEQVAALQKLHAEELASKEQELSRRLEARERELQEQ 530
Query: 425 LT-ALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKA 601
+ AL + E+L + E+E ++++L + +A +
Sbjct: 531 MRIALEKSRSEYLKLTQEKEQQESLALEELELQKKAILTESENKLQELGQEA---EAYRT 587
Query: 602 DLLGIVSELQLKLN-SGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAE 778
+L + + L+ L S SE V + E E + KE+ RT+ E
Sbjct: 588 RILELETSLEKSLQESKTQSEHLAVHL---EAEKNKHNKELTALAEQHRTE-------VE 637
Query: 779 GTRNYLEFEELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXX 958
G + + + L +L ++ VE L ++ K+ +L EK++ ++
Sbjct: 638 GLQQ--QQDSLWTERLQSLSQQHQAAVEELREKYQQEKDALLK-EKESLFQAHIQDMNEK 694
Query: 959 XXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERK 1138
E+V SE+ L +EL +A+ MK+ L+ + + R
Sbjct: 695 TLEKLDKKQMELESVSSELSEALRARDQLAEELSVLR---GDADKMKQALEAELEEQRRH 751
Query: 1139 NSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTE--EEKSKLTTLQLTHNRLLQ 1312
+ ++E+QEL + L+ E R +++ E ++++ L+ +
Sbjct: 752 HQREVGSISEQQELTVRRAEKALKDELSRLGALLDERDEHLRERQARVQDLEAHLQKSAG 811
Query: 1313 EYNNALKTIEELKRRESEKVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDL 1492
E AL ++ L +S +E G E + K L ++ K + KQ ++
Sbjct: 812 ELQQALAKLDLLHSEQS------AAREQAGAYEEQLAQMQQKVLDLETEKSLLTKQVVEM 865
Query: 1493 ETMAVLRAQMEVYCSDFHAERAAREKIHEEKEQLALQLAVL--LKD----DNAFEEGASR 1654
ET + C + A+RA +++ ++ +L ++ L L+D ++ E+ +R
Sbjct: 866 ET------HKKHVCEELDAQRAQVQQLERQRSELEEKVRSLAQLQDSQLKNSTVEKEQAR 919
Query: 1655 QSLMEMQS 1678
QSLME ++
Sbjct: 920 QSLMEKEN 927
>ref|NP_082297.1| myosin-14 [Mus musculus].
Length = 1992
Score = 64.7 bits (156), Expect = 3e-10
Identities = 104/427 (24%), Positives = 175/427 (40%), Gaps = 41/427 (9%)
Frame = +2
Query: 503 EDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIR 682
EDL + RV +A+AE++ L ++ L+ E D L + Q +L S E E++
Sbjct: 1138 EDLEAE-RVARAKAEKQRRDLGEELEALRGELEDTLDSTNAQQ-ELRS--KREQEVTELK 1193
Query: 683 MAEGEADAA----MKEIKTSPGPIRTDSIDTSKSA-------EGTRNYLEFE----ELTV 817
A E A M+E++ + + + A E TR LE E + +
Sbjct: 1194 KALEEESRAHEVSMQELRQRHSQALVEMAEQLEQARRGKGVWEKTRLSLEAEVSELKAEL 1253
Query: 818 SQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPE 997
S L +EG QK RLE L+E + R D E+ + +
Sbjct: 1254 SSLQTSRQEGEQKRRRLESQLQEVQGRSSDSERARSEAAE-------------------- 1293
Query: 998 TVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQE 1177
++ EL+ T LSEAE K L ++ S+ S+L++ QE
Sbjct: 1294 -----------KLQRAQAELESVSTALSEAE-------SKAIRLGKELSSAESQLHDTQE 1335
Query: 1178 LLYNN-----------KKLELQVESMRSEIKMEQAKTEEEKSKL--TTLQLTHNRLLQEY 1318
LL + LE + +R +++ E E +L T QL+ R QE
Sbjct: 1336 LLQEETRAKLALGSRVRALEAEAAGLREQMEEEVVARERAGRELQSTQAQLSEWRRRQEE 1395
Query: 1319 NNA-LKTIEELKRRESEKVDKVV--LQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKD 1489
A L+ EE +RR + + + + L E +E E+A Q ++D+ + +Q++
Sbjct: 1396 EAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERLERARRRLQQELDDATVDLGQQKQL 1455
Query: 1490 LETMAVLRAQMEVYCSDFHAERAA-------REKIH---EEKEQLALQLAVLLKDDNAFE 1639
L T+ + + + ++ E+AA RE+I E+E AL L L+++
Sbjct: 1456 LSTLEKKQRKFDQLLAE---EKAAVLRAVEDRERIEAEGREREARALSLTRALEEEQEAR 1512
Query: 1640 EGASRQS 1660
E RQ+
Sbjct: 1513 EELERQN 1519
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,315,598
Number of extensions: 1494215
Number of successful extensions: 7498
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 7162
Number of HSP's successfully gapped: 120
Length of query: 662
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 554
Effective length of database: 12,373,671
Effective search space: 6855013734
Effective search space used: 6855013734
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012815
(1986 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008214.1| optineurin [Homo sapiens]. 822 0.0
Alignment gi|NP_001008213.1| optineurin [Homo sapiens]. 822 0.0
Alignment gi|NP_068815.2| optineurin [Homo sapiens]. 822 0.0
Alignment gi|NP_001008212.1| optineurin [Homo sapiens]. 822 0.0
Alignment gi|NP_001093326.2| NF-kappa-B essential modulator isoform b [Ho... 117 6e-29
Alignment gi|NP_003630.1| NF-kappa-B essential modulator isoform a [Homo ... 117 6e-29
Alignment gi|NP_001093327.1| NF-kappa-B essential modulator isoform a [Ho... 117 6e-29
Alignment gi|NP_001138727.1| NF-kappa-B essential modulator isoform c [Ho... 56 1e-10
Alignment gi|NP_001070654.1| myosin-14 isoform 1 [Homo sapiens]. 64 7e-10
Alignment gi|NP_079005.3| myosin-14 isoform 2 [Homo sapiens]. 64 7e-10
>ref|NP_001008214.1| optineurin [Homo sapiens].
Length = 577
Score = 822 bits (2122), Expect(2) = 0.0
Identities = 436/559 (77%), Positives = 474/559 (84%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 838
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
REGNQKVERLE+ALKEAKER+ DFEKK +RS PETVGSEVE
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LNLQVT+LFKELQEAHTKLSEAELMKKRLQEKCQALERKNSA PSELNEKQEL+Y NKK
Sbjct: 301 ALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKK 360
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
LELQVESM SEIKMEQAKTE+EKSKLT LQ+THN+LLQE+NNALKTIEEL R+ESEKVD+
Sbjct: 361 LELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR 420
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
VL+EL+ KLE+AEKALASKQLQMDEMKQTIAKQE+DLETM +LRAQMEVYCSDFHAERA
Sbjct: 421 AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERA 480
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLAVLLK+++AFE+G RQSLMEMQSRHGAR SD+DQQA+LV RGA
Sbjct: 481 AREKIHEEKEQLALQLAVLLKENDAFEDG-GRQSLMEMQSRHGARTSDSDQQAYLVQRGA 539
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQ+NIPIHSCP
Sbjct: 540 EDRDW--RQQRNIPIHSCP 556
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 556 PKCGEVLPDIDTLQIHVMDCII 577
>ref|NP_001008213.1| optineurin [Homo sapiens].
Length = 577
Score = 822 bits (2122), Expect(2) = 0.0
Identities = 436/559 (77%), Positives = 474/559 (84%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 838
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
REGNQKVERLE+ALKEAKER+ DFEKK +RS PETVGSEVE
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LNLQVT+LFKELQEAHTKLSEAELMKKRLQEKCQALERKNSA PSELNEKQEL+Y NKK
Sbjct: 301 ALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKK 360
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
LELQVESM SEIKMEQAKTE+EKSKLT LQ+THN+LLQE+NNALKTIEEL R+ESEKVD+
Sbjct: 361 LELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR 420
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
VL+EL+ KLE+AEKALASKQLQMDEMKQTIAKQE+DLETM +LRAQMEVYCSDFHAERA
Sbjct: 421 AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERA 480
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLAVLLK+++AFE+G RQSLMEMQSRHGAR SD+DQQA+LV RGA
Sbjct: 481 AREKIHEEKEQLALQLAVLLKENDAFEDG-GRQSLMEMQSRHGARTSDSDQQAYLVQRGA 539
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQ+NIPIHSCP
Sbjct: 540 EDRDW--RQQRNIPIHSCP 556
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 556 PKCGEVLPDIDTLQIHVMDCII 577
>ref|NP_068815.2| optineurin [Homo sapiens].
Length = 577
Score = 822 bits (2122), Expect(2) = 0.0
Identities = 436/559 (77%), Positives = 474/559 (84%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 838
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
REGNQKVERLE+ALKEAKER+ DFEKK +RS PETVGSEVE
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LNLQVT+LFKELQEAHTKLSEAELMKKRLQEKCQALERKNSA PSELNEKQEL+Y NKK
Sbjct: 301 ALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKK 360
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
LELQVESM SEIKMEQAKTE+EKSKLT LQ+THN+LLQE+NNALKTIEEL R+ESEKVD+
Sbjct: 361 LELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR 420
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
VL+EL+ KLE+AEKALASKQLQMDEMKQTIAKQE+DLETM +LRAQMEVYCSDFHAERA
Sbjct: 421 AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERA 480
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLAVLLK+++AFE+G RQSLMEMQSRHGAR SD+DQQA+LV RGA
Sbjct: 481 AREKIHEEKEQLALQLAVLLKENDAFEDG-GRQSLMEMQSRHGARTSDSDQQAYLVQRGA 539
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQ+NIPIHSCP
Sbjct: 540 EDRDW--RQQRNIPIHSCP 556
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 556 PKCGEVLPDIDTLQIHVMDCII 577
>ref|NP_001008212.1| optineurin [Homo sapiens].
Length = 577
Score = 822 bits (2122), Expect(2) = 0.0
Identities = 436/559 (77%), Positives = 474/559 (84%), Gaps = 6/559 (1%)
Frame = +2
Query: 137 MSHQPLSCLTEKGDSPTETTGNGPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKL 316
MSHQPLSCLTEK DSP+E+TGNGPP LAHPNLDTFTP ELLQQM+ELL ENHQLKEAMKL
Sbjct: 1 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL 60
Query: 317 NNQAMKGRFEELSAWTEKQKEERLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXR 496
NNQAMKGRFEELSAWTEKQKEER FFE QSKEAKERL ALS R
Sbjct: 61 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER 120
Query: 497 SFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVE 676
S ED T D R+P+AEAEQE +QL+TQV RLQAEKADLLGIVSELQLKLNS G SEDSFVE
Sbjct: 121 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE 180
Query: 677 IRMAEGEADAAMKEIKTSPGPIRTDSIDT------SKSAEGTRNYLEFEELTVSQLLLCL 838
IRMAEGEA+ ++KEIK SPGP RT S T S+SA+G +NY E EELTVSQLLLCL
Sbjct: 181 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL 240
Query: 839 REGNQKVERLEIALKEAKERILDFEKKAKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVE 1018
REGNQKVERLE+ALKEAKER+ DFEKK +RS PETVGSEVE
Sbjct: 241 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEVE 300
Query: 1019 MLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELNEKQELLYNNKK 1198
LNLQVT+LFKELQEAHTKLSEAELMKKRLQEKCQALERKNSA PSELNEKQEL+Y NKK
Sbjct: 301 ALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKK 360
Query: 1199 LELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDK 1378
LELQVESM SEIKMEQAKTE+EKSKLT LQ+THN+LLQE+NNALKTIEEL R+ESEKVD+
Sbjct: 361 LELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR 420
Query: 1379 VVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHAERA 1558
VL+EL+ KLE+AEKALASKQLQMDEMKQTIAKQE+DLETM +LRAQMEVYCSDFHAERA
Sbjct: 421 AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERA 480
Query: 1559 AREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLMEMQSRHGARASDADQQAFLVXRGA 1738
AREKIHEEKEQLALQLAVLLK+++AFE+G RQSLMEMQSRHGAR SD+DQQA+LV RGA
Sbjct: 481 AREKIHEEKEQLALQLAVLLKENDAFEDG-GRQSLMEMQSRHGARTSDSDQQAYLVQRGA 539
Query: 1739 EDRNWLQQQQQNIPIHSCP 1795
EDR+W +QQ+NIPIHSCP
Sbjct: 540 EDRDW--RQQRNIPIHSCP 556
Score = 44.7 bits (104), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCII 1857
P+CGEVLPDIDTL IHV DCII
Sbjct: 556 PKCGEVLPDIDTLQIHVMDCII 577
>ref|NP_001093326.2| NF-kappa-B essential modulator isoform b [Homo sapiens].
Length = 487
Score = 117 bits (293), Expect(2) = 6e-29
Identities = 78/227 (34%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALE---RKNSATPSELNEKQELLYNNK-- 1195
QVT+L ELQE+ ++L A ++CQALE R S +L ++E L
Sbjct: 213 QVTSLLGELQESQSRLEAAT-------KECQALEGRARAASEQARQLESEREALQQQHSV 265
Query: 1196 ---KLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L +Q +S+ + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE
Sbjct: 266 QVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV----GSE 321
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
+ + L++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF
Sbjct: 322 RKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 381
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
AER AREK+ E+KE L QL L ++ + + + +E M+ RH
Sbjct: 382 AERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH 428
Score = 30.4 bits (67), Expect(2) = 6e-29
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 466 PKCQYQAPDMDTLQIHVMECI 486
Score = 54.3 bits (129), Expect = 4e-07
Identities = 89/387 (22%), Positives = 160/387 (41%), Gaps = 1/387 (0%)
Frame = +2
Query: 203 GPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEE 382
G P + H + P E LQ+ E EN +L++A++ +NQ ++ R EEL + Q+EE
Sbjct: 102 GKPAMLHLPSEQGAP-ETLQRCLE---ENQELRDAIRQSNQILRERCEELLHFQASQREE 157
Query: 383 RLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQ 562
+ F + +EA++ + L E L D + K +A +EVE
Sbjct: 158 KEFLMCKFQEARKLVERL--------------------GLEKL--DLKRQKEQALREVEH 195
Query: 563 LKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPI 742
LK ++ +KA + V+ L E++ ++ +AA KE + G
Sbjct: 196 LKRCQQQMAEDKASVKAQVTSL-------------LGELQESQSRLEAATKECQALEGRA 242
Query: 743 RTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKK 919
R S + ++ E R L+ + + V QL + + +E AL+ ER E+K
Sbjct: 243 RAAS-EQARQLESEREALQQQHSVQVDQL-------RMQGQSVEAALR--MERQAASEEK 292
Query: 920 AKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMK 1099
K S VGSE +Q+ L ++LQ+A EA + K
Sbjct: 293 RKLAQLQVAYHQLFQEYDNHIKSS--VVGSE-RKRGMQLEDLKQQLQQA----EEALVAK 345
Query: 1100 KRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEEKSKLT 1279
+ + +K + E + + ++ L+ Q + +++ + E+ E+ K
Sbjct: 346 QEVIDKLK----------EEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKE 395
Query: 1280 TLQLTHNRLLQEYNNALKTIEELKRRE 1360
LQ +L +EY+ + +E R E
Sbjct: 396 LLQEQLEQLQREYSKLKASCQESARIE 422
>ref|NP_003630.1| NF-kappa-B essential modulator isoform a [Homo sapiens].
Length = 419
Score = 117 bits (293), Expect(2) = 6e-29
Identities = 78/227 (34%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALE---RKNSATPSELNEKQELLYNNK-- 1195
QVT+L ELQE+ ++L A ++CQALE R S +L ++E L
Sbjct: 145 QVTSLLGELQESQSRLEAAT-------KECQALEGRARAASEQARQLESEREALQQQHSV 197
Query: 1196 ---KLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L +Q +S+ + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE
Sbjct: 198 QVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV----GSE 253
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
+ + L++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF
Sbjct: 254 RKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 313
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
AER AREK+ E+KE L QL L ++ + + + +E M+ RH
Sbjct: 314 AERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH 360
Score = 30.4 bits (67), Expect(2) = 6e-29
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 398 PKCQYQAPDMDTLQIHVMECI 418
Score = 54.3 bits (129), Expect = 4e-07
Identities = 89/387 (22%), Positives = 160/387 (41%), Gaps = 1/387 (0%)
Frame = +2
Query: 203 GPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEE 382
G P + H + P E LQ+ E EN +L++A++ +NQ ++ R EEL + Q+EE
Sbjct: 34 GKPAMLHLPSEQGAP-ETLQRCLE---ENQELRDAIRQSNQILRERCEELLHFQASQREE 89
Query: 383 RLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQ 562
+ F + +EA++ + L E L D + K +A +EVE
Sbjct: 90 KEFLMCKFQEARKLVERL--------------------GLEKL--DLKRQKEQALREVEH 127
Query: 563 LKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPI 742
LK ++ +KA + V+ L E++ ++ +AA KE + G
Sbjct: 128 LKRCQQQMAEDKASVKAQVTSL-------------LGELQESQSRLEAATKECQALEGRA 174
Query: 743 RTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKK 919
R S + ++ E R L+ + + V QL + + +E AL+ ER E+K
Sbjct: 175 RAAS-EQARQLESEREALQQQHSVQVDQL-------RMQGQSVEAALR--MERQAASEEK 224
Query: 920 AKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMK 1099
K S VGSE +Q+ L ++LQ+A EA + K
Sbjct: 225 RKLAQLQVAYHQLFQEYDNHIKSS--VVGSE-RKRGMQLEDLKQQLQQA----EEALVAK 277
Query: 1100 KRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEEKSKLT 1279
+ + +K + E + + ++ L+ Q + +++ + E+ E+ K
Sbjct: 278 QEVIDKLK----------EEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKE 327
Query: 1280 TLQLTHNRLLQEYNNALKTIEELKRRE 1360
LQ +L +EY+ + +E R E
Sbjct: 328 LLQEQLEQLQREYSKLKASCQESARIE 354
>ref|NP_001093327.1| NF-kappa-B essential modulator isoform a [Homo sapiens].
Length = 419
Score = 117 bits (293), Expect(2) = 6e-29
Identities = 78/227 (34%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Frame = +2
Query: 1031 QVTTLFKELQEAHTKLSEAELMKKRLQEKCQALE---RKNSATPSELNEKQELLYNNK-- 1195
QVT+L ELQE+ ++L A ++CQALE R S +L ++E L
Sbjct: 145 QVTSLLGELQESQSRLEAAT-------KECQALEGRARAASEQARQLESEREALQQQHSV 197
Query: 1196 ---KLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESE 1366
+L +Q +S+ + ++ME+ EEK KL LQ+ +++L QEY+N +K+ SE
Sbjct: 198 QVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV----GSE 253
Query: 1367 KVDKVVLQELNGKLEMAEKALASKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFH 1546
+ + L++L +L+ AE+AL +KQ +D++K+ + + +ET+ VL+AQ ++Y +DF
Sbjct: 254 RKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 313
Query: 1547 AERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
AER AREK+ E+KE L QL L ++ + + + +E M+ RH
Sbjct: 314 AERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH 360
Score = 30.4 bits (67), Expect(2) = 6e-29
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 398 PKCQYQAPDMDTLQIHVMECI 418
Score = 54.3 bits (129), Expect = 4e-07
Identities = 89/387 (22%), Positives = 160/387 (41%), Gaps = 1/387 (0%)
Frame = +2
Query: 203 GPPTLAHPNLDTFTPHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEE 382
G P + H + P E LQ+ E EN +L++A++ +NQ ++ R EEL + Q+EE
Sbjct: 34 GKPAMLHLPSEQGAP-ETLQRCLE---ENQELRDAIRQSNQILRERCEELLHFQASQREE 89
Query: 383 RLFFETQSKEAKERLTALSXXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQ 562
+ F + +EA++ + L E L D + K +A +EVE
Sbjct: 90 KEFLMCKFQEARKLVERL--------------------GLEKL--DLKRQKEQALREVEH 127
Query: 563 LKTQVARLQAEKADLLGIVSELQLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPI 742
LK ++ +KA + V+ L E++ ++ +AA KE + G
Sbjct: 128 LKRCQQQMAEDKASVKAQVTSL-------------LGELQESQSRLEAATKECQALEGRA 174
Query: 743 RTDSIDTSKSAEGTRNYLEFE-ELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKK 919
R S + ++ E R L+ + + V QL + + +E AL+ ER E+K
Sbjct: 175 RAAS-EQARQLESEREALQQQHSVQVDQL-------RMQGQSVEAALR--MERQAASEEK 224
Query: 920 AKDRSXXXXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMK 1099
K S VGSE +Q+ L ++LQ+A EA + K
Sbjct: 225 RKLAQLQVAYHQLFQEYDNHIKSS--VVGSE-RKRGMQLEDLKQQLQQA----EEALVAK 277
Query: 1100 KRLQEKCQALERKNSATPSELNEKQELLYNNKKLELQVESMRSEIKMEQAKTEEEKSKLT 1279
+ + +K + E + + ++ L+ Q + +++ + E+ E+ K
Sbjct: 278 QEVIDKLK----------EEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKE 327
Query: 1280 TLQLTHNRLLQEYNNALKTIEELKRRE 1360
LQ +L +EY+ + +E R E
Sbjct: 328 LLQEQLEQLQREYSKLKASCQESARIE 354
>ref|NP_001138727.1| NF-kappa-B essential modulator isoform c [Homo sapiens].
Length = 320
Score = 55.8 bits (133), Expect(2) = 1e-10
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Frame = +2
Query: 1217 SMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVD-----KV 1381
S R E + K +E + + L L L ++ AL+ +E LKR + + + K
Sbjct: 85 SQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQQMAEDKASVKA 144
Query: 1382 VLQELNGKLEMAEKAL--ASKQLQMDEMKQTIAK---------QEKDLETMAVL----RA 1516
+ L G+L+ ++ L A+K+ Q E ++ +A+ QE D + + R
Sbjct: 145 QVTSLLGELQESQSRLEAATKECQALEGRRKLAQLQVAYHQLFQEYDNHIKSSVVGSERK 204
Query: 1517 QMEVYCSDFHAERAAREKIHEEKEQLALQLAVLLKDDNAFEEGASRQSLME-MQSRH 1684
+ ++Y +DF AER AREK+ E+KE L QL L ++ + + + +E M+ RH
Sbjct: 205 RADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH 261
Score = 30.4 bits (67), Expect(2) = 1e-10
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1792 PQCGEVLPDIDTLLIHVTDCI 1854
P+C PD+DTL IHV +CI
Sbjct: 299 PKCQYQAPDMDTLQIHVMECI 319
>ref|NP_001070654.1| myosin-14 isoform 1 [Homo sapiens].
Length = 2003
Score = 63.5 bits (153), Expect = 7e-10
Identities = 106/503 (21%), Positives = 197/503 (39%), Gaps = 37/503 (7%)
Frame = +2
Query: 263 QMRELLIENHQLKEAMKLNNQAMKGRFEE-LSAWTEKQKEERLFFETQSKEAKERLTALS 439
+++E ++E Q E ++ A GR EE L A + ++E K +E AL+
Sbjct: 1091 ELQEQMVEQQQRAEELR----AQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALA 1146
Query: 440 XXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIV 619
+ EDL + RV + +AE++ L ++ L+ E D L
Sbjct: 1147 ------------------EAQEDLESE-RVARTKAEKQRRDLGEELEALRGELEDTLDST 1187
Query: 620 SELQLKLNSGGPSEDSFVEIRMAEGEA--DAAMKEIKTSPGPIRTDSIDTSKSA------ 775
+ Q +L S E + ++ + E +AA++E++ G + + + A
Sbjct: 1188 NAQQ-ELRSKREQEVTELKKTLEEETRIHEAAVQELRQRHGQALGELAEQLEQARRGKGA 1246
Query: 776 -EGTRNYLEFE----ELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXX 940
E TR LE E +S L +EG Q+ RLE+ L+E + R D E+ + +
Sbjct: 1247 WEKTRLALEAEVSELRAELSSLQTARQEGEQRRRRLELQLQEVQGRAGDGERARAEAA-- 1304
Query: 941 XXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKC 1120
++LQ A +L + K
Sbjct: 1305 ------------------------------------EKLQRAQAELENVSGALNEAESKT 1328
Query: 1121 QALERKNSATPSELNEKQELLYNN-----------KKLELQVESMRSEIKMEQAKTEEEK 1267
L ++ S+T ++L++ QELL + +E + +R +++ E A E
Sbjct: 1329 IRLSKELSSTEAQLHDAQELLQEETRAKLALGSRVRAMEAEAAGLREQLEEEAAARERAG 1388
Query: 1268 SKLTTLQL---THNRLLQEYNNALKTIEELKRRESEKVDKVV--LQELNGKLEMAEKALA 1432
+L T Q R +E AL+ EE +RR + + + + L E ++ E+
Sbjct: 1389 RELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAEALTQRLAEKTETVDRLERGRR 1448
Query: 1433 SKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHA-------ERAAREKIHEEKEQ 1591
Q ++D+ + +Q + + T+ + + + ++ A ER E E+E
Sbjct: 1449 RLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAEEKAAVLRAVEERERAEAEGREREA 1508
Query: 1592 LALQLAVLLKDDNAFEEGASRQS 1660
AL L L+++ E RQ+
Sbjct: 1509 RALSLTRALEEEQEAREELERQN 1531
>ref|NP_079005.3| myosin-14 isoform 2 [Homo sapiens].
Length = 1995
Score = 63.5 bits (153), Expect = 7e-10
Identities = 106/503 (21%), Positives = 197/503 (39%), Gaps = 37/503 (7%)
Frame = +2
Query: 263 QMRELLIENHQLKEAMKLNNQAMKGRFEE-LSAWTEKQKEERLFFETQSKEAKERLTALS 439
+++E ++E Q E ++ A GR EE L A + ++E K +E AL+
Sbjct: 1083 ELQEQMVEQQQRAEELR----AQLGRKEEELQAALARAEDEGGARAQLLKSLREAQAALA 1138
Query: 440 XXXXXXXXXXXXXXXXXXRSFEDLTGDPRVPKAEAEQEVEQLKTQVARLQAEKADLLGIV 619
+ EDL + RV + +AE++ L ++ L+ E D L
Sbjct: 1139 ------------------EAQEDLESE-RVARTKAEKQRRDLGEELEALRGELEDTLDST 1179
Query: 620 SELQLKLNSGGPSEDSFVEIRMAEGEA--DAAMKEIKTSPGPIRTDSIDTSKSA------ 775
+ Q +L S E + ++ + E +AA++E++ G + + + A
Sbjct: 1180 NAQQ-ELRSKREQEVTELKKTLEEETRIHEAAVQELRQRHGQALGELAEQLEQARRGKGA 1238
Query: 776 -EGTRNYLEFE----ELTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSXX 940
E TR LE E +S L +EG Q+ RLE+ L+E + R D E+ + +
Sbjct: 1239 WEKTRLALEAEVSELRAELSSLQTARQEGEQRRRRLELQLQEVQGRAGDGERARAEAA-- 1296
Query: 941 XXXXXXXXXXXXXXXXSPETVGSEVEMLNLQVTTLFKELQEAHTKLSEAELMKKRLQEKC 1120
++LQ A +L + K
Sbjct: 1297 ------------------------------------EKLQRAQAELENVSGALNEAESKT 1320
Query: 1121 QALERKNSATPSELNEKQELLYNN-----------KKLELQVESMRSEIKMEQAKTEEEK 1267
L ++ S+T ++L++ QELL + +E + +R +++ E A E
Sbjct: 1321 IRLSKELSSTEAQLHDAQELLQEETRAKLALGSRVRAMEAEAAGLREQLEEEAAARERAG 1380
Query: 1268 SKLTTLQL---THNRLLQEYNNALKTIEELKRRESEKVDKVV--LQELNGKLEMAEKALA 1432
+L T Q R +E AL+ EE +RR + + + + L E ++ E+
Sbjct: 1381 RELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAEALTQRLAEKTETVDRLERGRR 1440
Query: 1433 SKQLQMDEMKQTIAKQEKDLETMAVLRAQMEVYCSDFHA-------ERAAREKIHEEKEQ 1591
Q ++D+ + +Q + + T+ + + + ++ A ER E E+E
Sbjct: 1441 RLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAEEKAAVLRAVEERERAEAEGREREA 1500
Query: 1592 LALQLAVLLKDDNAFEEGASRQS 1660
AL L L+++ E RQ+
Sbjct: 1501 RALSLTRALEEEQEAREELERQN 1523
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,838,578
Number of extensions: 1793804
Number of successful extensions: 9829
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 9233
Number of HSP's successfully gapped: 139
Length of query: 662
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,704,088
Effective search space: 8131360664
Effective search space used: 8131360664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012815
(1986 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 369 4e-99
>Sscrofa_Chr10
|| Length = 79102373
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 504 aggacctcactggggaccccagggtccccaaggcggaagcagaacaggaagtagaacagc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77726109 aggacctcactggggaccccagggtccccaaggcggaagcagaacaggaagtagaacagc 77726050
Query: 564 tgaagacccaggtggcacgccttcaagctgaaaaggcggatctgctgggcatcgtgtctg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77726049 tgaagacccaggtggcacgccttcaagctgaaaaggcggatctgctgggcatcgtgtctg 77725990
Query: 624 aattgcagctcaagctgaactcaggtggcccctctgaagactcctttgttgaaatcagga 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77725989 aattgcagctcaagctgaactcaggtggcccctctgaagactcctttgttgaaatcagga 77725930
Query: 684 tggctg 689
||||||
Sbjct: 77725929 tggctg 77725924
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 125 ggaactgctgccatgtcccaccaaccacttagctgcctgactgagaagggggacagcccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77731544 ggaactgctgccatgtcccaccaaccacttagctgcctgactgagaagggggacagcccc 77731485
Query: 185 accgaaaccacaggaaatggaccccccactctggctcacccaaaccttgacacgttcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77731484 accgaaaccacaggaaatggaccccccactctggctcacccaaaccttgacacgttcacc 77731425
Query: 245 ccacatgaactgctgcagcagatgagagagcttctaatcgagaaccatcagctgaaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77731424 ccacatgaactgctgcagcagatgagagagcttctaatcgagaaccatcagctgaaag 77731367
Score = 331 bits (167), Expect = 9e-88
Identities = 232/248 (93%), Gaps = 6/248 (2%)
Strand = Plus / Minus
Query: 1732 aggagctgaagatagaaactggctgcaacagcaacaacagaatattccaattcattcttg 1791
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77690911 aggagctgaggatagaaactggctgcaacagcaacaacagaatattccaattcattcttg 77690852
Query: 1792 ccccaa-tgtggagaggttctgcctgacatagatacactactgattcacgttacggactg 1850
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77690851 ccccaaatgtggagaagttctgcctgacatagatacactactgattcacgttacggactg 77690792
Query: 1851 catcatttaagtgctgacattttactt-cccaaactgttggtaaatgtcaga-ttttttn 1908
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 77690791 catcatttaagtgctgacattttacttccccaaactgttggtaaatgtcagatttttttc 77690732
Query: 1909 nnnnnnagacttgaac-tttgtgttatttgttttactc-aatacttggctcattgta-tt 1965
||||||| || ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 77690731 cccccaagacttggacttttgtgttatttgttttactcaaatacttggctcattgtattt 77690672
Query: 1966 attttagg 1973
||||||||
Sbjct: 77690671 attttagg 77690664
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 1359 agtctgaaaaagtggataaggtggtgctgcaggaactgaatggaaagctggaaatggcag 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77705050 agtctgaaaaagtggataaggtggtgctgcaggaactgaatggaaagctggaaatggcag 77704991
Query: 1419 agaaggccctggcttccaagcagctccaaatggatgagatgaagcagaccattgccaagc 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77704990 agaaggccctggcttccaagcagctccaaatggatgagatgaagcagaccattgccaagc 77704931
Query: 1479 aagagaaggacctggaaaccatggctgttctcagggctcag 1519
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 77704930 aagagaaggacctggaaaccatggctgttctcagggctcag 77704890
Score = 301 bits (152), Expect = 8e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 1117 atgtcaggcacttgaaaggaaaaattctgcaaccccatcagagctgaatgaaaagcaaga 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77707396 atgtcaggcacttgaaaggaaaaattctgcaaccccatcagagctgaatgaaaagcaaga 77707337
Query: 1177 gcttctttataataacaaaaagttggagctccaagtggaaagcatgagatcagaaattaa 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77707336 gcttctttataataacaaaaagttggagctccaagtggaaagcatgagatcagaaattaa 77707277
Query: 1237 aatggagcaagccaaaacagaagaggaaaagt 1268
||||||||||||||||||||||||||||||||
Sbjct: 77707276 aatggagcaagccaaaacagaagaggaaaagt 77707245
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 763 gagcaaatctgcagaaggtaccaggaattatttggaatttgaggaattaactgtgagcca 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77720129 gagcaaatctgcagaaggtaccaggaattatttggaatttgaggaattaactgtgagcca 77720070
Query: 823 gctcctgctgtgtctaagggaaggaaaccagaaggtggagagacttgaaatcgccctcaa 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77720069 gctcctgctgtgtctaagggaaggaaaccagaaggtggagagacttgaaatcgccctcaa 77720010
Query: 883 ggaagccaaagaaag 897
|||||||||||||||
Sbjct: 77720009 ggaagccaaagaaag 77719995
Score = 258 bits (130), Expect = 1e-65
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 1517 cagatggaggtatactgttctgactttcatgctgaaagagcggcaagagagaagattcat 1576
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 77698619 cagatggaggtatactgttctgactttcatgctgaaagagcagcaagagagaagattcat 77698560
Query: 1577 gaagaaaaggagcaactggcattgcagctggcagttttgctgaaagacgacaatgctttt 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77698559 gaagaaaaggagcaactggcattgcagctggcagttttgctgaaagacgacaatgctttt 77698500
Query: 1637 gaagagggagccag 1650
||||||||||||||
Sbjct: 77698499 gaagagggagccag 77698486
Score = 250 bits (126), Expect = 3e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 1 agcccccgccaccgcccccggccggtgccctggtcagcgtctgcatccgggtccggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77740433 agcccccgccaccgcccccggccggtgccctggtcagcgtctgcatccgggtccggagcc 77740374
Query: 61 ctttcccagccggcaagatgccgaggaagcagtgaccccgagggaggttggatcccgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77740373 ctttcccagccggcaagatgccgaggaagcagtgaccccgagggaggttggatcccgagc 77740314
Query: 121 gccggg 126
||||||
Sbjct: 77740313 gccggg 77740308
Score = 232 bits (117), Expect = 6e-58
Identities = 133/141 (94%)
Strand = Plus / Minus
Query: 301 agaagccatgaagctaaataatcaagctatgaaagggcgatttgaggagctttcagcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77730197 agaagccatgaagctaaataatcaagctatgaaagggcgatttgaggagctttcagcctg 77730138
Query: 361 gacagagaagcagaaggaagaacgccnnnnnnnngagacccagagcaaagaagccaaaga 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 77730137 gacagagaagcagaaggaagaacgccttttttttgagacccagagcaaagaagccaaaga 77730078
Query: 421 gcgcctaacggctctgagtct 441
|||||||||||||||||||||
Sbjct: 77730077 gcgcctaacggctctgagtct 77730057
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1001 gttggaagtgaagtggaaatgttaaaccttcaggtgacaaccctgtttaaggagcttcag 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77709139 gttggaagtgaagtggaaatgttaaaccttcaggtgacaaccctgtttaaggagcttcag 77709080
Query: 1061 gaggctcacacgaaactcagtgaagctgagctcatgaagaagagacttcaaga 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77709079 gaggctcacacgaaactcagtgaagctgagctcatgaagaagagacttcaaga 77709027
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1267 gtccaaattaactactctacagttgacccacaacaggcttcttcaagaatacaataatgc 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77706877 gtccaaattaactactctacagttgacccacaacaggcttcttcaagaatacaataatgc 77706818
Query: 1327 actgaaaacaattgaggaactgaaaagaagagag 1360
||||||||||||||||||||||||||||||||||
Sbjct: 77706817 actgaaaacaattgaggaactgaaaagaagagag 77706784
Score = 168 bits (85), Expect = 7e-39
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 1647 ccagcaggcaatccttgatggaaatgcagagccgtcatggggcaagagcaagtgatgctg 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77696627 ccagcaggcaatccttgatggaaatgcagagccgtcatggggcaagagcaagtgatgctg 77696568
Query: 1707 accagcaggcttttcttgttcnaagagg 1734
||||||||||||||||||||| ||||||
Sbjct: 77696567 accagcaggcttttcttgttcaaagagg 77696540
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 689 gagggagaagcagatgcagcaatgaaggaaatcaagacaagtcctgggcccataagaact 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77724147 gagggagaagcagatgcagcaatgaaggaaatcaagacaagtcctgggcccataagaact 77724088
Query: 749 gattccattgacacg 763
|||||||||||||||
Sbjct: 77724087 gattccattgacacg 77724073
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 896 agaattttagattttgaaaagaaagccaaggatcgttct 934
|||||||||||||||||||||||||||||||||||||||
Sbjct: 77710927 agaattttagattttgaaaagaaagccaaggatcgttct 77710889
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,368,361
Number of extensions: 572
Number of successful extensions: 572
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 16
Length of query: 1986
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1964
Effective length of database: 2,808,408,574
Effective search space: 5515714439336
Effective search space used: 5515714439336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)