Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012818
(1193 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533253.2| PREDICTED: similar to HRAS-like suppressor 3 (H... 233 2e-61
Alignment gi|XP_867336.1| PREDICTED: similar to HRAS-like suppressor 3 (H... 214 1e-55
Alignment gi|XP_867347.1| PREDICTED: similar to HRAS-like suppressor 3 (H... 157 2e-38
Alignment gi|XP_867358.1| PREDICTED: similar to HRAS-like suppressor 3 (H... 138 1e-32
Alignment gi|XP_535846.2| PREDICTED: similar to HRAS-like suppressor [Can... 135 1e-31
Alignment gi|XP_540893.2| PREDICTED: similar to Retinoic acid receptor re... 130 2e-30
Alignment gi|XP_540892.2| PREDICTED: similar to HRAS-like suppressor 3 (H... 129 6e-30
Alignment gi|XP_533254.2| PREDICTED: similar to H-rev107-like protein 5 [... 124 2e-28
Alignment gi|XP_539777.2| PREDICTED: similar to lecithin retinol acyltran... 53 5e-07
>ref|XP_533253.2| PREDICTED: similar to HRAS-like suppressor 3 (H-rev 107 protein
homolog) (HREV107-3) isoform 1 [Canis familiaris].
Length = 162
Score = 233 bits (595), Expect = 2e-61
Identities = 115/162 (70%), Positives = 124/162 (76%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRA PEP++GDLIEIFRPFYRHWAIYVGDGYVVHLAPPSE+ T+KA+V
Sbjct: 1 MRASTPEPKVGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSTLTEKAVV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLY+V GRD+YQ+NNKHD KYSPLPPSKIVQRAEELVGQE+ Y L ENCEHFVNEL
Sbjct: 61 KKELLYDVVGRDKYQINNKHDDKYSPLPPSKIVQRAEELVGQELPYSLPCENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD IGVM SRNKRQKQ
Sbjct: 121 RYGVARSDQVRDAVMAAGIAGVGLAAMGLIGVMFSRNKRQKQ 162
>ref|XP_867336.1| PREDICTED: similar to HRAS-like suppressor 3 (H-rev 107 protein
homolog) (HREV107-3) isoform 2 [Canis familiaris].
Length = 139
Score = 214 bits (545), Expect = 1e-55
Identities = 102/131 (77%), Positives = 111/131 (84%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRA PEP++GDLIEIFRPFYRHWAIYVGDGYVVHLAPPSE+ T+KA+V
Sbjct: 1 MRASTPEPKVGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSTLTEKAVV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLY+V GRD+YQ+NNKHD KYSPLPPSKIVQRAEELVGQE+ Y L ENCEHFVNEL
Sbjct: 61 KKELLYDVVGRDKYQINNKHDDKYSPLPPSKIVQRAEELVGQELPYSLPCENCEHFVNEL 120
Query: 696 RYGVARSDQVR 728
RYGVARSDQVR
Sbjct: 121 RYGVARSDQVR 131
>ref|XP_867347.1| PREDICTED: similar to HRAS-like suppressor 3 (H-rev 107 protein
homolog) (HREV107-3) isoform 3 [Canis familiaris].
Length = 112
Score = 157 bits (397), Expect = 2e-38
Identities = 78/108 (72%), Positives = 84/108 (77%)
Frame = +3
Query: 498 TDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCE 677
T+KA+VKKELLY+V GRD+YQ+NNKHD KYSPLPPSKIVQRAEELVGQE+ Y L ENCE
Sbjct: 5 TEKAVVKKELLYDVVGRDKYQINNKHDDKYSPLPPSKIVQRAEELVGQELPYSLPCENCE 64
Query: 678 HFVNELRYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
HFVNELRYGVARSDQVRD IGVM SRNKRQKQ
Sbjct: 65 HFVNELRYGVARSDQVRDAVMAAGIAGVGLAAMGLIGVMFSRNKRQKQ 112
>ref|XP_867358.1| PREDICTED: similar to HRAS-like suppressor 3 (H-rev 107 protein
homolog) (HREV107-3) isoform 4 [Canis familiaris].
Length = 89
Score = 138 bits (347), Expect = 1e-32
Identities = 65/77 (84%), Positives = 71/77 (92%)
Frame = +3
Query: 498 TDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCE 677
T+KA+VKKELLY+V GRD+YQ+NNKHD KYSPLPPSKIVQRAEELVGQE+ Y L ENCE
Sbjct: 5 TEKAVVKKELLYDVVGRDKYQINNKHDDKYSPLPPSKIVQRAEELVGQELPYSLPCENCE 64
Query: 678 HFVNELRYGVARSDQVR 728
HFVNELRYGVARSDQVR
Sbjct: 65 HFVNELRYGVARSDQVR 81
>ref|XP_535846.2| PREDICTED: similar to HRAS-like suppressor [Canis familiaris].
Length = 169
Score = 135 bits (339), Expect = 1e-31
Identities = 65/151 (43%), Positives = 90/151 (59%)
Frame = +3
Query: 357 PQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYE 536
PQ GDLIE+FR Y+HWA+Y+GDGYV+++AP + + KALVK +LL +
Sbjct: 15 PQQGDLIEVFRSGYQHWALYLGDGYVINIAPLEDGISTSFTSAKSVFSKKALVKMQLLKD 74
Query: 537 VAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARS 716
V G D Y++NNK+DG YSPLP +++QR+E ++GQEV Y + NCEHFV LRYG S
Sbjct: 75 VVGNDTYRINNKYDGTYSPLPVEEVMQRSEMVIGQEVEYDILVNNCEHFVTLLRYGEGVS 134
Query: 717 DQVRDXXXXXXXXXXXXXXXSFIGVMLSRNK 809
+Q S +G+ R +
Sbjct: 135 EQANQAISTIGFMTAAACAFSLLGLFPKRQR 165
>ref|XP_540893.2| PREDICTED: similar to Retinoic acid receptor responder protein 3
(Tazarotene-induced gene 3 protein) (RAR-responsive
protein TIG3) (Retinoid inducible gene 1 protein) [Canis
familiaris].
Length = 206
Score = 130 bits (327), Expect = 2e-30
Identities = 63/124 (50%), Positives = 82/124 (66%)
Frame = +3
Query: 354 EPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLY 533
EP+ GDLIEIFR Y HWAIYVG GYV+HL PPSE +++A+V+++ L
Sbjct: 52 EPRPGDLIEIFRIGYEHWAIYVGGGYVIHLTPPSEYPGAGSSSVFSVLSNRAVVRRDRLE 111
Query: 534 EVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVAR 713
+V G RY+VNN D KY+P P ++I+ A++ +GQE+ Y L S NCEHFV LRYG
Sbjct: 112 DVVGNCRYRVNNHLDHKYTPRPVNEIIYSAKQKIGQEMPYSLLSRNCEHFVTNLRYGEPH 171
Query: 714 SDQV 725
S QV
Sbjct: 172 SRQV 175
>ref|XP_540892.2| PREDICTED: similar to HRAS-like suppressor 3 (H-rev 107 protein
homolog) (HREV107-3) [Canis familiaris].
Length = 126
Score = 129 bits (324), Expect = 6e-30
Identities = 62/77 (80%), Positives = 69/77 (89%)
Frame = +3
Query: 498 TDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCE 677
T+KA+VKKELLY+V GRD+YQ+NNKHD KYSPLPPSKIVQRAEE VGQE+ Y L EN E
Sbjct: 5 TEKAVVKKELLYDVVGRDKYQINNKHDDKYSPLPPSKIVQRAEEPVGQELPYSLPCENRE 64
Query: 678 HFVNELRYGVARSDQVR 728
HFVNELRYGVARSD+VR
Sbjct: 65 HFVNELRYGVARSDRVR 81
>ref|XP_533254.2| PREDICTED: similar to H-rev107-like protein 5 [Canis familiaris].
Length = 227
Score = 124 bits (311), Expect = 2e-28
Identities = 65/125 (52%), Positives = 81/125 (64%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P P+ GDLIEIFR Y HWAIYV D VVHLAPPSE +++A+VK L
Sbjct: 76 PRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSE--EFEAGSITSVFSNRAVVKYSRL 133
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V +++NNK DG Y PLP KI+QR ++++ + V Y L NCEHFVN+LRYGVA
Sbjct: 134 EDVLHGCSWKINNKLDGTYLPLPVDKIIQRTKKMINKIVQYSLIEGNCEHFVNDLRYGVA 193
Query: 711 RSDQV 725
RS QV
Sbjct: 194 RSQQV 198
>ref|XP_539777.2| PREDICTED: similar to lecithin retinol acyltransferase [Canis
familiaris].
Length = 230
Score = 53.1 bits (126), Expect = 5e-07
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Frame = +3
Query: 366 GDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYEVAG 545
GD++E+ R H+ IY+GD V H+ P T K + K L+ V G
Sbjct: 48 GDVLEVPRTHLTHYGIYLGDNRVAHMMP----DILLALTDDTGLTQKVVSNKRLILGVIG 103
Query: 546 R-DRYQVNNKHDGKY---------------SPLPPSKIVQRAEELVGQEVLYKLTSENCE 677
R +V+ D Y L ++ QRAE+L+G Y L NCE
Sbjct: 104 RVASIRVDTVEDFAYGADILVNHLDQSLKKKALLNEEVAQRAEKLLGM-TSYSLLWNNCE 162
Query: 678 HFVNELRYGVARSDQ 722
HFV R+G S Q
Sbjct: 163 HFVTYCRFGTPVSPQ 177
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,665,318
Number of extensions: 1353296
Number of successful extensions: 6648
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6619
Number of HSP's successfully gapped: 9
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012818
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012818
(1193 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068748.1| group XVI phospholipase A2 [Bos taurus]. 230 2e-60
Alignment gi|NP_001098479.1| hypothetical protein LOC618367 [Bos taurus]. 201 1e-51
Alignment gi|XP_002699423.1| PREDICTED: HRAS-like suppressor 2-like [Bos ... 162 4e-40
Alignment gi|NP_001069693.2| HRAS-like suppressor [Bos taurus]. 133 3e-31
Alignment gi|XP_870984.2| PREDICTED: HRAS-like suppressor 2-like [Bos tau... 124 2e-28
Alignment gi|XP_002684613.1| PREDICTED: HRAS-like suppressor 2-like [Bos ... 123 3e-28
Alignment gi|XP_002699350.1| PREDICTED: HRASLS5 protein-like [Bos taurus]. 122 5e-28
Alignment gi|XP_600915.2| PREDICTED: HRAS-like suppressor family, member ... 122 5e-28
Alignment gi|XP_002699422.1| PREDICTED: HRAS-like suppressor 2-like [Bos ... 119 5e-27
Alignment gi|XP_870318.1| PREDICTED: HRAS-like suppressor 2-like [Bos tau... 110 2e-24
>ref|NP_001068748.1| group XVI phospholipase A2 [Bos taurus].
Length = 159
Score = 230 bits (586), Expect = 2e-60
Identities = 114/159 (71%), Positives = 121/159 (76%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRA PEPQ GDLIEIFRPFYRHWA+Y+G+GYVVHLAPPSEI TDKALV
Sbjct: 1 MRAPFPEPQPGDLIEIFRPFYRHWAVYIGNGYVVHLAPPSEIPGAGAASLMSALTDKALV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKE L +V GRDRY VNNKHDG+YSPLPPSKI+QRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKERLCDVVGRDRYHVNNKHDGRYSPLPPSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKR 812
RYGV RSDQVRD IGVM SRNK+
Sbjct: 121 RYGVPRSDQVRDAIMAVGIAGVGLAAMGLIGVMFSRNKK 159
>ref|NP_001098479.1| hypothetical protein LOC618367 [Bos taurus].
Length = 159
Score = 201 bits (510), Expect = 1e-51
Identities = 102/157 (64%), Positives = 113/157 (71%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
PEPQ GDLIEIFRPFYRHWA+YVG GYVVHLAP SEI D+A+VKKE L
Sbjct: 4 PEPQPGDLIEIFRPFYRHWAVYVGGGYVVHLAPSSEIAGAGGASIMSAVADRAIVKKERL 63
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V GRD Y+VNNKHD KY+P PPSKIVQ AEELVG+E+ Y LTS+NCEHFVNELRYGV+
Sbjct: 64 CDVVGRDPYRVNNKHDDKYNPFPPSKIVQWAEELVGRELCYSLTSKNCEHFVNELRYGVS 123
Query: 711 RSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RSDQVRD S GVM SRNK+Q Q
Sbjct: 124 RSDQVRDAVTAATISGVGLIALS-AGVMFSRNKKQSQ 159
>ref|XP_002699423.1| PREDICTED: HRAS-like suppressor 2-like [Bos taurus].
Length = 136
Score = 162 bits (411), Expect = 4e-40
Identities = 79/125 (63%), Positives = 92/125 (73%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
PEPQLGDLIEI Y HWA+YVG GYVVHLAP S+I D+A+VKKE L
Sbjct: 4 PEPQLGDLIEIVHGPYSHWAVYVGGGYVVHLAPLSKISGIRWSTIGSSLADRAIVKKERL 63
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V G+D Y+VNNKHD KY+P PPSKIVQ AE+LVG+E Y++ NCEHFVNELRY V+
Sbjct: 64 CDVVGKDPYEVNNKHDDKYNPFPPSKIVQLAEKLVGREFCYRVLRANCEHFVNELRYRVS 123
Query: 711 RSDQV 725
RSDQV
Sbjct: 124 RSDQV 128
>ref|NP_001069693.2| HRAS-like suppressor [Bos taurus].
Length = 161
Score = 133 bits (335), Expect = 3e-31
Identities = 61/123 (49%), Positives = 85/123 (69%)
Frame = +3
Query: 357 PQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYE 536
P+ GDLIE+FRP Y+HWA+Y+GDGYV+++AP + + KALVK +LL +
Sbjct: 36 PRPGDLIEVFRPCYQHWALYLGDGYVINIAPLEDGISPSFTSAKSLFSRKALVKMQLLKD 95
Query: 537 VAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARS 716
V G+D Y++NNK+D Y PLP +++QR+E ++GQEV Y + NCEHFV LRYG S
Sbjct: 96 VVGKDTYRINNKYDDTYPPLPVEEVIQRSEFVIGQEVEYDILVNNCEHFVTLLRYGEGVS 155
Query: 717 DQV 725
+QV
Sbjct: 156 EQV 158
>ref|XP_870984.2| PREDICTED: HRAS-like suppressor 2-like [Bos taurus].
Length = 130
Score = 124 bits (311), Expect = 2e-28
Identities = 62/104 (59%), Positives = 71/104 (68%)
Frame = +3
Query: 501 DKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEH 680
D+A VKKE L +V G+D Y+VNNKHD KY+P PPSKIVQ E+LVG+E Y L NCEH
Sbjct: 27 DRARVKKERLCDVVGKDPYRVNNKHDDKYNPFPPSKIVQLVEKLVGREFCYHLLHTNCEH 86
Query: 681 FVNELRYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKR 812
FVNELRYGV+RSDQVRD IGVM SRNK+
Sbjct: 87 FVNELRYGVSRSDQVRDAIMAVGIAGVGLAAMGLIGVMFSRNKK 130
>ref|XP_002684613.1| PREDICTED: HRAS-like suppressor 2-like [Bos taurus].
Length = 143
Score = 123 bits (309), Expect = 3e-28
Identities = 63/107 (58%), Positives = 75/107 (70%)
Frame = +3
Query: 501 DKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEH 680
D+A+VKKE L +V G+D Y+VNNKHD KY+P PPSKIVQ AE+LVG+E Y++ NCEH
Sbjct: 38 DRAIVKKERLCDVVGKDPYEVNNKHDDKYNPFPPSKIVQLAEKLVGREFCYRVLRANCEH 97
Query: 681 FVNELRYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
FVNELRY V+RSDQVRD S GVM SRNK+Q Q
Sbjct: 98 FVNELRYRVSRSDQVRDAVTAATISGVGLIALS-AGVMFSRNKKQSQ 143
>ref|XP_002699350.1| PREDICTED: HRASLS5 protein-like [Bos taurus].
Length = 174
Score = 122 bits (307), Expect = 5e-28
Identities = 65/125 (52%), Positives = 81/125 (64%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P+P+ GDLIEIFR Y HWAIYV D VVHLAPPSE +++A+VK L
Sbjct: 23 PKPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSE--DFEAGSITSVFSNRAVVKYSHL 80
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V ++VNNK DG Y PLP KI+QR ++++ + V Y L NCEHFVN+LRYGV
Sbjct: 81 EDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMINKIVQYSLIEGNCEHFVNDLRYGVP 140
Query: 711 RSDQV 725
RS QV
Sbjct: 141 RSQQV 145
>ref|XP_600915.2| PREDICTED: HRAS-like suppressor family, member 5, partial [Bos
taurus].
Length = 154
Score = 122 bits (307), Expect = 5e-28
Identities = 65/125 (52%), Positives = 81/125 (64%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P+P+ GDLIEIFR Y HWAIYV D VVHLAPPSE +++A+VK L
Sbjct: 3 PKPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSE--DFEAGSITSVFSNRAVVKYSHL 60
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V ++VNNK DG Y PLP KI+QR ++++ + V Y L NCEHFVN+LRYGV
Sbjct: 61 EDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMINKIVQYSLIEGNCEHFVNDLRYGVP 120
Query: 711 RSDQV 725
RS QV
Sbjct: 121 RSQQV 125
>ref|XP_002699422.1| PREDICTED: HRAS-like suppressor 2-like [Bos taurus].
Length = 132
Score = 119 bits (298), Expect = 5e-27
Identities = 62/107 (57%), Positives = 72/107 (67%)
Frame = +3
Query: 501 DKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEH 680
D+A VKKE L +V G+D Y+VNNKHD KY+P PPSKIVQ E+LVG+E Y L NCEH
Sbjct: 27 DRARVKKERLCDVVGKDPYRVNNKHDDKYNPFPPSKIVQLVEKLVGREFCYHLLHTNCEH 86
Query: 681 FVNELRYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
FVNELRYGV+RSDQVRD S G+M S NK+Q Q
Sbjct: 87 FVNELRYGVSRSDQVRDAVTAATILGVGLIALS-SGIMFSINKKQNQ 132
>ref|XP_870318.1| PREDICTED: HRAS-like suppressor 2-like [Bos taurus].
Length = 112
Score = 110 bits (275), Expect = 2e-24
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = +3
Query: 501 DKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEH 680
D+A+VKKE L +V G+D Y+VNNKHD KY+P PPSKIVQ AE+LVG+E Y++ NCEH
Sbjct: 30 DRAIVKKERLCDVVGKDPYEVNNKHDDKYNPFPPSKIVQLAEKLVGREFCYRVLRANCEH 89
Query: 681 FVNELRYGVARSDQV 725
FVNELRY V+RSDQV
Sbjct: 90 FVNELRYRVSRSDQV 104
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,810,904
Number of extensions: 1317500
Number of successful extensions: 6282
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6238
Number of HSP's successfully gapped: 14
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012818
(1193 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122655.1| PREDICTED: group XVI phospholipase A2-like i... 266 2e-71
Alignment gi|XP_003122654.1| PREDICTED: group XVI phospholipase A2-like i... 266 2e-71
Alignment gi|XP_003122653.1| PREDICTED: group XVI phospholipase A2-like i... 266 2e-71
Alignment gi|XP_003122652.1| PREDICTED: group XVI phospholipase A2-like i... 266 2e-71
Alignment gi|XP_003353855.1| PREDICTED: HRAS-like suppressor 5-like [Sus ... 231 5e-61
Alignment gi|XP_003132643.1| PREDICTED: HRAS-like suppressor-like isoform... 131 6e-31
Alignment gi|XP_003132642.1| PREDICTED: HRAS-like suppressor-like isoform... 131 6e-31
>ref|XP_003122655.1| PREDICTED: group XVI phospholipase A2-like isoform 4 [Sus scrofa].
Length = 162
Score = 266 bits (679), Expect = 2e-71
Identities = 135/162 (83%), Positives = 135/162 (83%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEI TDKALV
Sbjct: 1 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD SFIGVMLSRNKRQKQ
Sbjct: 121 RYGVARSDQVRDAIMAAGIAGVGLAAVSFIGVMLSRNKRQKQ 162
>ref|XP_003122654.1| PREDICTED: group XVI phospholipase A2-like isoform 3 [Sus scrofa].
Length = 162
Score = 266 bits (679), Expect = 2e-71
Identities = 135/162 (83%), Positives = 135/162 (83%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEI TDKALV
Sbjct: 1 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD SFIGVMLSRNKRQKQ
Sbjct: 121 RYGVARSDQVRDAIMAAGIAGVGLAAVSFIGVMLSRNKRQKQ 162
>ref|XP_003122653.1| PREDICTED: group XVI phospholipase A2-like isoform 2 [Sus scrofa].
Length = 162
Score = 266 bits (679), Expect = 2e-71
Identities = 135/162 (83%), Positives = 135/162 (83%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEI TDKALV
Sbjct: 1 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD SFIGVMLSRNKRQKQ
Sbjct: 121 RYGVARSDQVRDAIMAAGIAGVGLAAVSFIGVMLSRNKRQKQ 162
>ref|XP_003122652.1| PREDICTED: group XVI phospholipase A2-like isoform 1 [Sus scrofa].
Length = 162
Score = 266 bits (679), Expect = 2e-71
Identities = 135/162 (83%), Positives = 135/162 (83%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEI TDKALV
Sbjct: 1 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD SFIGVMLSRNKRQKQ
Sbjct: 121 RYGVARSDQVRDAIMAAGIAGVGLAAVSFIGVMLSRNKRQKQ 162
>ref|XP_003353855.1| PREDICTED: HRAS-like suppressor 5-like [Sus scrofa].
Length = 305
Score = 231 bits (590), Expect = 5e-61
Identities = 115/135 (85%), Positives = 115/135 (85%)
Frame = +3
Query: 318 LTSPEKMRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXX 497
L P L PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEI
Sbjct: 142 LAPPTLFLVLQPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSAL 201
Query: 498 TDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCE 677
TDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCE
Sbjct: 202 TDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCE 261
Query: 678 HFVNELRYGVARSDQ 722
HFVNELRYGVARSDQ
Sbjct: 262 HFVNELRYGVARSDQ 276
>ref|XP_003132643.1| PREDICTED: HRAS-like suppressor-like isoform 2 [Sus scrofa].
Length = 169
Score = 131 bits (330), Expect = 6e-31
Identities = 63/149 (42%), Positives = 90/149 (60%)
Frame = +3
Query: 357 PQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYE 536
P+ GDLIE+FRP Y+HWA+Y+GDGYV+++AP + + KALVK +LL +
Sbjct: 15 PRPGDLIEVFRPGYQHWALYLGDGYVINIAPLEDGISTSFTSAKSIFSTKALVKMQLLKD 74
Query: 537 VAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARS 716
V G D +++NNK+D Y+PLP +++QR+E ++GQEV Y + NCEHFV LRYG S
Sbjct: 75 VVGNDTFRINNKYDDTYAPLPVEEVMQRSEFVIGQEVEYDIFVNNCEHFVTLLRYGAGIS 134
Query: 717 DQVRDXXXXXXXXXXXXXXXSFIGVMLSR 803
+Q SF+G+ R
Sbjct: 135 EQANRAISTIGFVTAAAGAFSFLGLFPKR 163
>ref|XP_003132642.1| PREDICTED: HRAS-like suppressor-like isoform 1 [Sus scrofa].
Length = 169
Score = 131 bits (330), Expect = 6e-31
Identities = 63/149 (42%), Positives = 90/149 (60%)
Frame = +3
Query: 357 PQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYE 536
P+ GDLIE+FRP Y+HWA+Y+GDGYV+++AP + + KALVK +LL +
Sbjct: 15 PRPGDLIEVFRPGYQHWALYLGDGYVINIAPLEDGISTSFTSAKSIFSTKALVKMQLLKD 74
Query: 537 VAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARS 716
V G D +++NNK+D Y+PLP +++QR+E ++GQEV Y + NCEHFV LRYG S
Sbjct: 75 VVGNDTFRINNKYDDTYAPLPVEEVMQRSEFVIGQEVEYDIFVNNCEHFVTLLRYGAGIS 134
Query: 717 DQVRDXXXXXXXXXXXXXXXSFIGVMLSR 803
+Q SF+G+ R
Sbjct: 135 EQANRAISTIGFVTAAAGAFSFLGLFPKR 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,546,224
Number of extensions: 847367
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4174
Number of HSP's successfully gapped: 8
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012818
(1193 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_644675.2| group XVI phospholipase A2 [Mus musculus]. 224 8e-59
Alignment gi|NP_038779.2| HRAS-like suppressor [Mus musculus]. 131 9e-31
Alignment gi|NP_080007.1| HRAS-like suppressor 5 [Mus musculus]. 123 2e-28
>ref|NP_644675.2| group XVI phospholipase A2 [Mus musculus].
Length = 162
Score = 224 bits (572), Expect = 8e-59
Identities = 112/162 (69%), Positives = 123/162 (75%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
M A IPEP+ GDLIEIFRP YRHWAIYVGDGYV+HLAPPSEI TDKA+V
Sbjct: 1 MLAPIPEPKPGDLIEIFRPMYRHWAIYVGDGYVIHLAPPSEIAGAGAASIMSALTDKAIV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELL VAG+D+YQVNNKHD +Y+PLP SKI+QRAE LVGQEVLY+LTSENCEHFVNEL
Sbjct: 61 KKELLCHVAGKDKYQVNNKHDEEYTPLPLSKIIQRAERLVGQEVLYRLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGV RSDQVRD +GVMLSRNK+QKQ
Sbjct: 121 RYGVPRSDQVRDAVKAVGIAGVGLAALGLVGVMLSRNKKQKQ 162
>ref|NP_038779.2| HRAS-like suppressor [Mus musculus].
Length = 167
Score = 131 bits (330), Expect = 9e-31
Identities = 66/151 (43%), Positives = 88/151 (58%)
Frame = +3
Query: 357 PQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYE 536
P GDLIE+FRP Y+HWA+Y+GDGYV+++AP I T KALVK +LL +
Sbjct: 15 PHPGDLIEVFRPCYQHWALYLGDGYVINIAPIDGIRSSFTSAKSVFST-KALVKMQLLKD 73
Query: 537 VAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARS 716
V G D Y++NNK+D Y PLP +++QR+E +GQEV Y L NCEHFV LRYG S
Sbjct: 74 VVGNDTYRINNKYDTTYPPLPVEEVIQRSEFAIGQEVAYDLLVNNCEHFVTLLRYGEGVS 133
Query: 717 DQVRDXXXXXXXXXXXXXXXSFIGVMLSRNK 809
+Q +F+G+ R +
Sbjct: 134 EQANRAIGTIGLVAAGIDIFTFLGLFPKRQR 164
>ref|NP_080007.1| HRAS-like suppressor 5 [Mus musculus].
Length = 294
Score = 123 bits (309), Expect = 2e-28
Identities = 69/144 (47%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
Frame = +3
Query: 300 PA*NRGLTSPEKMRALI--PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXX 473
P N + S +K +A+ P P+ GDLIEIFR Y HWAIYV D VVHLAPPSE
Sbjct: 125 PTSNSEIESTQKNQAVEGNPRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEFEAGS 184
Query: 474 XXXXXXXXTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLY 653
+++A+VK L +V +++NNK DG Y PLP KI+QR + ++ + V Y
Sbjct: 185 ITSIF---SNRAVVKYSRLEDVLHGCSWKINNKLDGTYLPLPVDKIMQRTKNMINKIVQY 241
Query: 654 KLTSENCEHFVNELRYGVARSDQV 725
L NCEHFVN+LRYGV RS QV
Sbjct: 242 SLIEGNCEHFVNDLRYGVPRSQQV 265
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,462,264
Number of extensions: 1096464
Number of successful extensions: 4680
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4662
Number of HSP's successfully gapped: 3
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012818
(1193 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121675.1| group XVI phospholipase A2 [Homo sapiens]. 242 4e-64
Alignment gi|NP_009000.2| group XVI phospholipase A2 [Homo sapiens]. 242 4e-64
Alignment gi|NP_060348.1| HRAS-like suppressor 2 [Homo sapiens]. 187 2e-47
Alignment gi|NP_004576.2| retinoic acid receptor responder protein 3 [Hom... 130 2e-30
Alignment gi|NP_065119.1| HRAS-like suppressor [Homo sapiens]. 129 7e-30
Alignment gi|NP_001140201.1| HRAS-like suppressor 5 isoform 2 [Homo sapie... 121 1e-27
Alignment gi|NP_473449.1| HRAS-like suppressor 5 isoform 1 [Homo sapiens]. 121 1e-27
Alignment gi|NP_001140200.1| HRAS-like suppressor 5 isoform 3 [Homo sapie... 95 1e-19
>ref|NP_001121675.1| group XVI phospholipase A2 [Homo sapiens].
Length = 162
Score = 242 bits (618), Expect = 4e-64
Identities = 122/162 (75%), Positives = 128/162 (79%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRA IPEP+ GDLIEIFRPFYRHWAIYVGDGYVVHLAPPSE+ TDKA+V
Sbjct: 1 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLY+VAG D+YQVNNKHD KYSPLP SKI+QRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD S IGVM SRNKRQKQ
Sbjct: 121 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 162
>ref|NP_009000.2| group XVI phospholipase A2 [Homo sapiens].
Length = 162
Score = 242 bits (618), Expect = 4e-64
Identities = 122/162 (75%), Positives = 128/162 (79%)
Frame = +3
Query: 336 MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALV 515
MRA IPEP+ GDLIEIFRPFYRHWAIYVGDGYVVHLAPPSE+ TDKA+V
Sbjct: 1 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 60
Query: 516 KKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNEL 695
KKELLY+VAG D+YQVNNKHD KYSPLP SKI+QRAEELVGQEVLYKLTSENCEHFVNEL
Sbjct: 61 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 696 RYGVARSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RYGVARSDQVRD S IGVM SRNKRQKQ
Sbjct: 121 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 162
>ref|NP_060348.1| HRAS-like suppressor 2 [Homo sapiens].
Length = 162
Score = 187 bits (475), Expect = 2e-47
Identities = 94/157 (59%), Positives = 112/157 (71%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P P+LGDLIEI R Y HWAIYVGDGYVVHLAP SEI T+KA+VKKELL
Sbjct: 6 PRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIVKKELL 65
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
VAG D Y+VNNKHD +Y+PLP +KIV+RAEELVGQE+ Y LTS+NCEHFVN LRYGV+
Sbjct: 66 SVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHLRYGVS 125
Query: 711 RSDQVRDXXXXXXXXXXXXXXXSFIGVMLSRNKRQKQ 821
RSDQV S +G++L+R+KR++Q
Sbjct: 126 RSDQVTGAVTTVGVAAGLLAAASLVGILLARSKRERQ 162
>ref|NP_004576.2| retinoic acid receptor responder protein 3 [Homo sapiens].
Length = 164
Score = 130 bits (327), Expect = 2e-30
Identities = 63/124 (50%), Positives = 81/124 (65%)
Frame = +3
Query: 354 EPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLY 533
EP+ GDLIEIFR Y HWA+Y+GDGYV+HLAPPSE ++ A VK+E L
Sbjct: 7 EPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLE 66
Query: 534 EVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVAR 713
+V G Y+VNN D +Y P P I+ A+E+VGQ++ Y + S NCEHFV +LRYG +R
Sbjct: 67 DVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSR 126
Query: 714 SDQV 725
QV
Sbjct: 127 CKQV 130
>ref|NP_065119.1| HRAS-like suppressor [Homo sapiens].
Length = 168
Score = 129 bits (323), Expect = 7e-30
Identities = 65/145 (44%), Positives = 87/145 (60%)
Frame = +3
Query: 357 PQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELLYE 536
P GDLIE+FRP Y+HWA+Y+GDGYV+++AP I + KALVK +LL +
Sbjct: 15 PCPGDLIEVFRPGYQHWALYLGDGYVINIAPVDGIPASFTSAKSVF-SSKALVKMQLLKD 73
Query: 537 VAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARS 716
V G D Y++NNK+D Y PLP +I++R+E ++GQEV Y L NCEHFV LRYG S
Sbjct: 74 VVGNDTYRINNKYDETYPPLPVEEIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGEGVS 133
Query: 717 DQVRDXXXXXXXXXXXXXXXSFIGV 791
+Q SF+G+
Sbjct: 134 EQANRAISTVEFVTAAVGVFSFLGL 158
>ref|NP_001140201.1| HRAS-like suppressor 5 isoform 2 [Homo sapiens].
Length = 269
Score = 121 bits (304), Expect = 1e-27
Identities = 66/125 (52%), Positives = 79/125 (63%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P P+ GDLIEIFR Y HWAIYV D VVHLAPPSE +++A+VK L
Sbjct: 118 PRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSE--EFEVGSITSIFSNRAVVKYSRL 175
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V ++VNNK DG Y PLP KI+QR +++V + V Y L NCEHFVN LRYGV
Sbjct: 176 EDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVP 235
Query: 711 RSDQV 725
RS QV
Sbjct: 236 RSQQV 240
>ref|NP_473449.1| HRAS-like suppressor 5 isoform 1 [Homo sapiens].
Length = 279
Score = 121 bits (304), Expect = 1e-27
Identities = 66/125 (52%), Positives = 79/125 (63%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P P+ GDLIEIFR Y HWAIYV D VVHLAPPSE +++A+VK L
Sbjct: 128 PRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSE--EFEVGSITSIFSNRAVVKYSRL 185
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVA 710
+V ++VNNK DG Y PLP KI+QR +++V + V Y L NCEHFVN LRYGV
Sbjct: 186 EDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVP 245
Query: 711 RSDQV 725
RS QV
Sbjct: 246 RSQQV 250
>ref|NP_001140200.1| HRAS-like suppressor 5 isoform 3 [Homo sapiens].
Length = 253
Score = 94.7 bits (234), Expect = 1e-19
Identities = 52/108 (48%), Positives = 65/108 (60%)
Frame = +3
Query: 351 PEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIXXXXXXXXXXXXTDKALVKKELL 530
P P+ GDLIEIFR Y HWAIYV D VVHLAPPSE +++A+VK L
Sbjct: 128 PRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSE--EFEVGSITSIFSNRAVVKYSRL 185
Query: 531 YEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENC 674
+V ++VNNK DG Y PLP KI+QR +++V + V Y L NC
Sbjct: 186 EDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNC 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,711,790
Number of extensions: 1322268
Number of successful extensions: 6377
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6344
Number of HSP's successfully gapped: 8
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012818
(1193 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 932 0.0
Sscrofa_Chr10 537 e-150
>Sscrofa_Chr02
|| Length = 162569375
Score = 932 bits (470), Expect = 0.0
Identities = 473/474 (99%)
Strand = Plus / Plus
Query: 720 caggtcagagatgccatcatggcagctggcatcgcaggagtgggcctggctgctgtgagc 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681135 caggtcagagatgccatcatggcagctggcatcgcaggagtgggcctggctgctgtgagc 7681194
Query: 780 ttcattggcgtcatgctctccagaaacaagcggcaaaagcaatgagtggaaagggctgtc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681195 ttcattggcgtcatgctctccagaaacaagcggcaaaagcaatgagtggaaagggctgtc 7681254
Query: 840 ctgtcagccgtgactttatacattaagggggtcttgttttgctagagggtttgaggtttg 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681255 ctgtcagccgtgactttatacattaagggggtcttgttttgctagagggtttgaggtttg 7681314
Query: 900 gtttgtagctttcattctgttttataatgaggtttattttcaccgaataaaataaagccc 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681315 gtttgtagctttcattctgttttataatgaggtttattttcaccgaataaaataaagccc 7681374
Query: 960 aagaagggaggattttactgggaaaactgcagcaagaactggctggagtgaagtctgttg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681375 aagaagggaggattttactgggaaaactgcagcaagaactggctggagtgaagtctgttg 7681434
Query: 1020 cgggtacagcgaggctctgttcctggtgatgacaggttgcgctctggaccttcggagatt 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681435 cgggtacagcgaggctctgttcctggtgatgacaggttgcgctctggaccttcggagatt 7681494
Query: 1080 tttctctcaccttctctctgtgggctgcgtttttccatgtagcaaacagagtctaactcc 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681495 tttctctcaccttctctctgtgggctgcgtttttccatgtagcaaacagagtctaactcc 7681554
Query: 1140 gggtatctcaagtcatgggcatgtctggttgtgaggatacagatgggcagcaag 1193
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681555 ggttatctcaagtcatgggcatgtctggttgtgaggatacagatgggcagcaag 7681608
Score = 537 bits (271), Expect = e-150
Identities = 271/271 (100%)
Strand = Plus / Plus
Query: 454 gcgaaattgcgggagctggcgcggccagcctcatgtccgcgctgaccgacaaggccctgg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669388 gcgaaattgcgggagctggcgcggccagcctcatgtccgcgctgaccgacaaggccctgg 7669447
Query: 514 tgaagaaggaactgctgtacgaggtggcggggcgagaccggtaccaggtcaacaacaagc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669448 tgaagaaggaactgctgtacgaggtggcggggcgagaccggtaccaggtcaacaacaagc 7669507
Query: 574 atgatggcaagtactcaccgctgcctcccagcaaaatcgtccagcgggcggaggagctgg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669508 atgatggcaagtactcaccgctgcctcccagcaaaatcgtccagcgggcggaggagctgg 7669567
Query: 634 tgggccaggaggtgctctacaagctgaccagcgagaactgcgagcactttgtcaacgagc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669568 tgggccaggaggtgctctacaagctgaccagcgagaactgcgagcactttgtcaacgagc 7669627
Query: 694 tgcgctacggggtcgcccgcagcgaccaggt 724
|||||||||||||||||||||||||||||||
Sbjct: 7669628 tgcgctacggggtcgcccgcagcgaccaggt 7669658
Score = 527 bits (266), Expect = e-147
Identities = 273/274 (99%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 1 ggtggagggctgcattc-cgcatgtaaggaagggtgagacgcctggggtggctccccggg 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653592 ggtggagggctgcattcacgcatgtaaggaagggtgagacgcctggggtggctccccggg 7653651
Query: 60 tgcccgggactgtgtgggggatggagaagttgggtgcgccgcgagtaaacaagttaggga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653652 tgcccgggactgtgtgggggatggagaagttgggtgcgccgcgagtaaacaagttaggga 7653711
Query: 120 gcagctgcgagcagcggcctcccggtacccgcccacccggacggagggcgggacgcgccg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653712 gcagctgcgagcagcggcctcccggtacccgcccacccggacggagggcgggacgcgccg 7653771
Query: 180 gtcgccccactgactttctgggacgcggcgcacctagacaggcgacaccgatcgcgctct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653772 gtcgccccactgactttctgggacgcggcgcacctagacaggcgacaccgatcgcgctct 7653831
Query: 240 cgacccctgcgccgccagcctctcctgcatcagg 273
||||||||||||||||||||||||||||||||||
Sbjct: 7653832 cgacccctgcgccgccagcctctcctgcatcagg 7653865
Score = 527 bits (266), Expect = e-147
Identities = 273/274 (99%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 1 ggtggagggctgcattc-cgcatgtaaggaagggtgagacgcctggggtggctccccggg 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856624 ggtggagggctgcattcacgcatgtaaggaagggtgagacgcctggggtggctccccggg 7856565
Query: 60 tgcccgggactgtgtgggggatggagaagttgggtgcgccgcgagtaaacaagttaggga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856564 tgcccgggactgtgtgggggatggagaagttgggtgcgccgcgagtaaacaagttaggga 7856505
Query: 120 gcagctgcgagcagcggcctcccggtacccgcccacccggacggagggcgggacgcgccg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856504 gcagctgcgagcagcggcctcccggtacccgcccacccggacggagggcgggacgcgccg 7856445
Query: 180 gtcgccccactgactttctgggacgcggcgcacctagacaggcgacaccgatcgcgctct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856444 gtcgccccactgactttctgggacgcggcgcacctagacaggcgacaccgatcgcgctct 7856385
Query: 240 cgacccctgcgccgccagcctctcctgcatcagg 273
||||||||||||||||||||||||||||||||||
Sbjct: 7856384 cgacccctgcgccgccagcctctcctgcatcagg 7856351
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 351 ccagagccccagcttggagacctcattgagattttccgccctttctacagacattgggcc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666545 ccagagccccagcttggagacctcattgagattttccgccctttctacagacattgggcc 7666604
Query: 411 atttacgttggcgatggatatgtggtccacctggctcccccaag 454
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666605 atttacgttggcgatggatatgtggtccacctggctcccccaag 7666648
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 270 caggcatttctgcagctgatacagtcaactccagcctgaaatagagggctcacatcgcct 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654075 caggcatttctgcagctgatacagtcaactccagcctgaaatagagggctcacatcgcct 7654134
Query: 330 gagaagatgcgcgccctgatt 350
|||||||||||||||||||||
Sbjct: 7654135 gagaagatgcgcgccctgatt 7654155
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 270 caggcatttctgcagctgatacagtcaactccagcctgaaatagagggctcacatcgcct 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7856142 caggcatttctgcagctgatacagtcaactccagcctgaaatagagggctcacatcgcct 7856083
Query: 330 gagaagatgcgcgccctgatt 350
|||||||||||||||||||||
Sbjct: 7856082 gagaagatgcgcgccctgatt 7856062
>Sscrofa_Chr10
|| Length = 79102373
Score = 537 bits (271), Expect = e-150
Identities = 271/271 (100%)
Strand = Plus / Plus
Query: 454 gcgaaattgcgggagctggcgcggccagcctcatgtccgcgctgaccgacaaggccctgg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9821900 gcgaaattgcgggagctggcgcggccagcctcatgtccgcgctgaccgacaaggccctgg 9821959
Query: 514 tgaagaaggaactgctgtacgaggtggcggggcgagaccggtaccaggtcaacaacaagc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9821960 tgaagaaggaactgctgtacgaggtggcggggcgagaccggtaccaggtcaacaacaagc 9822019
Query: 574 atgatggcaagtactcaccgctgcctcccagcaaaatcgtccagcgggcggaggagctgg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9822020 atgatggcaagtactcaccgctgcctcccagcaaaatcgtccagcgggcggaggagctgg 9822079
Query: 634 tgggccaggaggtgctctacaagctgaccagcgagaactgcgagcactttgtcaacgagc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9822080 tgggccaggaggtgctctacaagctgaccagcgagaactgcgagcactttgtcaacgagc 9822139
Query: 694 tgcgctacggggtcgcccgcagcgaccaggt 724
|||||||||||||||||||||||||||||||
Sbjct: 9822140 tgcgctacggggtcgcccgcagcgaccaggt 9822170
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,394,373
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 8
Length of query: 1193
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1172
Effective length of database: 2,808,413,156
Effective search space: 3291460218832
Effective search space used: 3291460218832
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)