Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012826
(1212 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075927.1| ubiquitin-conjugating enzyme E2 G1 [Bos taur... 327 2e-89
Alignment gi|NP_001193039.1| ubiquitin-conjugating enzyme E2 R2 [Bos taur... 174 1e-43
Alignment gi|XP_002689844.1| PREDICTED: ubiquitin-conjugating enzyme E2R ... 174 1e-43
Alignment gi|NP_001069796.1| ubiquitin-conjugating enzyme E2 G2 [Bos taur... 170 2e-42
Alignment gi|NP_001193165.1| ubiquitin-conjugating enzyme E2 R1 [Bos taur... 166 3e-41
Alignment gi|XP_002689184.1| PREDICTED: ubiquitin-conjugating enzyme Cdc3... 166 3e-41
Alignment gi|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taur... 113 4e-25
Alignment gi|NP_001069007.1| ubiquitin-conjugating enzyme E2D 4 [Bos taur... 108 1e-23
Alignment gi|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taur... 107 2e-23
Alignment gi|NP_001068603.1| ubiquitin-conjugating enzyme E2 D3 [Bos taur... 105 1e-22
>ref|NP_001075927.1| ubiquitin-conjugating enzyme E2 G1 [Bos taurus].
Length = 170
Score = 327 bits (837), Expect = 2e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +2
Query: 425 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 604
NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE
Sbjct: 18 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 77
Query: 605 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 784
IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA
Sbjct: 78 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 137
Query: 785 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 883
NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE
Sbjct: 138 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 170
>ref|NP_001193039.1| ubiquitin-conjugating enzyme E2 R2 [Bos taurus].
Length = 238
Score = 174 bits (441), Expect = 1e-43
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D++DLY WEV I GPP+TLYEGG FKAH+ FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ +NGDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++WR+ + + ++ A +RK
Sbjct: 142 VDASVMFRKWRDSKGKD--KEYAEIIRK 167
>ref|XP_002689844.1| PREDICTED: ubiquitin-conjugating enzyme E2R 2-like [Bos taurus].
Length = 238
Score = 174 bits (441), Expect = 1e-43
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D++DLY WEV I GPP+TLYEGG FKAH+ FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ +NGDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++WR+ + + ++ A +RK
Sbjct: 142 VDASVMFRKWRDSKGKD--KEYAEIIRK 167
>ref|NP_001069796.1| ubiquitin-conjugating enzyme E2 G2 [Bos taurus].
Length = 165
Score = 170 bits (431), Expect = 2e-42
Identities = 79/145 (54%), Positives = 106/145 (73%)
Frame = +2
Query: 431 NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 610
NP EG AG +++ + + WE LI+GP DT +E GVF A L+FP DYPL PPKM+F E++
Sbjct: 19 NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMF 78
Query: 611 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV 790
HPN+ +G VCISILH PG+D GYE ERW P+ +VE I++SV+SMLA+PN +S ANV
Sbjct: 79 HPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANV 138
Query: 791 DAAKEWREDRNGEFKRKVARCVRKS 865
DA+K WR+DR +F + + V+KS
Sbjct: 139 DASKMWRDDRE-QFYKVAKQIVQKS 162
>ref|NP_001193165.1| ubiquitin-conjugating enzyme E2 R1 [Bos taurus].
Length = 234
Score = 166 bits (421), Expect = 3e-41
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D+ DLY WEV I GPP+T YEGG FKA L FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ + GDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++W+E + + R+ +RK
Sbjct: 142 VDASVMYRKWKESKGKD--REYTDIIRK 167
>ref|XP_002689184.1| PREDICTED: ubiquitin-conjugating enzyme Cdc34-like [Bos taurus].
Length = 234
Score = 166 bits (421), Expect = 3e-41
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D+ DLY WEV I GPP+T YEGG FKA L FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ + GDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++W+E + + R+ +RK
Sbjct: 142 VDASVMYRKWKESKGKD--REYTDIIRK 167
>ref|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taurus].
Length = 147
Score = 113 bits (282), Expect = 4e-25
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
D A+ ++ D+
Sbjct: 121 PDIAQIYKSDK 131
>ref|NP_001069007.1| ubiquitin-conjugating enzyme E2D 4 [Bos taurus].
Length = 151
Score = 108 bits (269), Expect = 1e-23
Identities = 51/131 (38%), Positives = 77/131 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVVFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
+ A ++ DR
Sbjct: 121 PEIAHTYKADR 131
>ref|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taurus].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 52/141 (36%), Positives = 82/141 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRNGEFKRKVAR 850
+ A+ ++ DR E ++AR
Sbjct: 121 PEIARIYKTDR--EKYNRIAR 139
>ref|NP_001068603.1| ubiquitin-conjugating enzyme E2 D3 [Bos taurus].
Length = 147
Score = 105 bits (261), Expect = 1e-22
Identities = 48/132 (36%), Positives = 77/132 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ N +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNDSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 121 PEIARIYKTDRD 132
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,036,857
Number of extensions: 1088899
Number of successful extensions: 3874
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 3798
Number of HSP's successfully gapped: 81
Length of query: 404
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,207,134
Effective search space: 4247933066
Effective search space used: 4247933066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012826
(1212 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854606.1| PREDICTED: similar to ubiquitin-conjugating enz... 174 2e-43
Alignment gi|XP_535603.2| PREDICTED: similar to ubiquitin-conjugating enz... 169 4e-42
Alignment gi|XP_533965.1| PREDICTED: similar to cell division cycle 34 [C... 113 4e-25
Alignment gi|XP_850730.1| PREDICTED: similar to ubiquitin-conjugating enz... 113 4e-25
Alignment gi|XP_855983.1| PREDICTED: similar to Ubiquitin-conjugating enz... 107 2e-23
Alignment gi|XP_855942.1| PREDICTED: similar to Ubiquitin-conjugating enz... 107 2e-23
Alignment gi|XP_855896.1| PREDICTED: similar to Ubiquitin-conjugating enz... 107 2e-23
Alignment gi|XP_848325.1| PREDICTED: similar to Ubiquitin-conjugating enz... 107 2e-23
Alignment gi|XP_850657.1| PREDICTED: similar to ubiquitin conjugating enz... 100 4e-21
Alignment gi|XP_549217.2| PREDICTED: similar to Ubiquitin-conjugating enz... 100 5e-21
>ref|XP_854606.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2R 2 [Canis
familiaris].
Length = 238
Score = 174 bits (441), Expect = 2e-43
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D++DLY WEV I GPP+TLYEGG FKAH+ FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ +NGDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++WR+ + + ++ A +RK
Sbjct: 142 VDASVMFRKWRDSKGKD--KEYAEIIRK 167
>ref|XP_535603.2| PREDICTED: similar to ubiquitin-conjugating enzyme E2G 2 [Canis
familiaris].
Length = 152
Score = 169 bits (429), Expect = 4e-42
Identities = 79/145 (54%), Positives = 105/145 (72%)
Frame = +2
Query: 431 NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 610
NP EG AG +++ + + WE LI+GP DT +E GVF A L+FP DYPL PPKM+F E++
Sbjct: 6 NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAVLSFPLDYPLSPPKMRFTCEMF 65
Query: 611 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV 790
HPN+ +G VCISILH PG+D GYE ERW P+ +VE I++SV+SMLA+PN +S ANV
Sbjct: 66 HPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANV 125
Query: 791 DAAKEWREDRNGEFKRKVARCVRKS 865
DA+K WR+DR +F R + +KS
Sbjct: 126 DASKMWRDDRE-QFCRVARQLAQKS 149
>ref|XP_533965.1| PREDICTED: similar to cell division cycle 34 [Canis familiaris].
Length = 205
Score = 113 bits (282), Expect = 4e-25
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Frame = +2
Query: 539 KAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH 718
+A L FP DYP PP +F+T++WHPN+ + GDVCISILH P +D E P ERW P
Sbjct: 28 EARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQ 87
Query: 719 TVETIMISVISMLADPNGDSPANVDAA---KEWREDRNGEFKRKVARCVRK 862
V TI++SVIS+L +PN SPANVDA+ ++W+E + + R+ +RK
Sbjct: 88 NVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKD--REYTDIIRK 136
>ref|XP_850730.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 1, UBC4/5
homolog [Canis familiaris].
Length = 147
Score = 113 bits (282), Expect = 4e-25
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
D A+ ++ D+
Sbjct: 121 PDIAQIYKSDK 131
>ref|XP_855983.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 5 [Canis familiaris].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 52/141 (36%), Positives = 82/141 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRNGEFKRKVAR 850
+ A+ ++ DR E ++AR
Sbjct: 121 PEIARIYKTDR--EKYNRIAR 139
>ref|XP_855942.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 4 [Canis familiaris].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 52/141 (36%), Positives = 82/141 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRNGEFKRKVAR 850
+ A+ ++ DR E ++AR
Sbjct: 121 PEIARIYKTDR--EKYNRIAR 139
>ref|XP_855896.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 3 [Canis familiaris].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 52/141 (36%), Positives = 82/141 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRNGEFKRKVAR 850
+ A+ ++ DR E ++AR
Sbjct: 121 PEIARIYKTDR--EKYNRIAR 139
>ref|XP_848325.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 1 [Canis familiaris].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 52/141 (36%), Positives = 82/141 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRNGEFKRKVAR 850
+ A+ ++ DR E ++AR
Sbjct: 121 PEIARIYKTDR--EKYNRIAR 139
>ref|XP_850657.1| PREDICTED: similar to ubiquitin conjugating enzyme isoform 2 [Canis
familiaris].
Length = 152
Score = 100 bits (248), Expect = 4e-21
Identities = 49/146 (33%), Positives = 90/146 (61%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P G S G +N++ +W +I GP T +E G FK + F ++YP +PP ++F++++
Sbjct: 18 EDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM 76
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPNV +G +C+ IL + RW P + V +I+ S+ S+L +PN +SPAN
Sbjct: 77 FHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPAN 123
Query: 788 VDAAKEWREDRNGEFKRKVARCVRKS 865
AA+ ++E++ E++++V+ V +S
Sbjct: 124 SQAAQLYQENKR-EYEKRVSAIVEQS 148
>ref|XP_549217.2| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 A
(Ubiquitin-protein ligase A) (Ubiquitin carrier protein
A) (HR6A) (mHR6A) [Canis familiaris].
Length = 224
Score = 99.8 bits (247), Expect = 5e-21
Identities = 49/146 (33%), Positives = 89/146 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P G S G +N++ W +I GP T +E G FK + F ++YP +PP ++F++++
Sbjct: 90 EDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKM 148
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPNV +G +C+ IL + RW P + V +I+ S+ S+L +PN +SPAN
Sbjct: 149 FHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPAN 195
Query: 788 VDAAKEWREDRNGEFKRKVARCVRKS 865
AA+ ++E++ E++++V+ V +S
Sbjct: 196 SQAAQLYQENKR-EYEKRVSAIVEQS 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,844,708
Number of extensions: 1123519
Number of successful extensions: 4194
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 4128
Number of HSP's successfully gapped: 74
Length of query: 404
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 299
Effective length of database: 15,374,224
Effective search space: 4596892976
Effective search space used: 4596892976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012826
(1212 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131932.1| PREDICTED: ubiquitin-conjugating enzyme E2 G... 327 e-113
Alignment gi|XP_003359057.1| PREDICTED: ubiquitin-conjugating enzyme E2 G... 170 2e-42
Alignment gi|XP_003360983.1| PREDICTED: ubiquitin-conjugating enzyme E2 R... 122 4e-28
Alignment gi|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D... 113 2e-25
Alignment gi|NP_001072142.1| UB2D1 [Sus scrofa]. 113 2e-25
Alignment gi|XP_001928631.1| PREDICTED: ubiquitin-conjugating enzyme E2 N... 109 3e-24
Alignment gi|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 108 6e-24
Alignment gi|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 107 1e-23
Alignment gi|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 107 1e-23
Alignment gi|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scro... 107 1e-23
>ref|XP_003131932.1| PREDICTED: ubiquitin-conjugating enzyme E2 G1-like [Sus scrofa].
Length = 293
Score = 327 bits (837), Expect(2) = e-113
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +2
Query: 425 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 604
NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE
Sbjct: 141 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 200
Query: 605 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 784
IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA
Sbjct: 201 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 260
Query: 785 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 883
NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE
Sbjct: 261 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 293
Score = 102 bits (254), Expect(2) = e-113
Identities = 60/116 (51%), Positives = 61/116 (52%)
Frame = +3
Query: 15 SPSAPARSGPGRSEPVAGEGTGGADGRVEGGKXXXXXXXXXXXXXXXXXXGREAL*GKLK 194
SPSAPARSGPGRSEPVAGEGTGGADGRVEGGK A +LK
Sbjct: 18 SPSAPARSGPGRSEPVAGEGTGGADGRVEGGKRASEVPV-------------RAAAARLK 64
Query: 195 RADSHRQRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACPQSFESPGASPGP 362
RADSHRQRG RACPQSFESPGASPGP
Sbjct: 65 RADSHRQRGAATAAPAQPPSASALPSWGSGFLSTPSSSSPRACPQSFESPGASPGP 120
>ref|XP_003359057.1| PREDICTED: ubiquitin-conjugating enzyme E2 G2-like [Sus scrofa].
Length = 165
Score = 170 bits (430), Expect = 2e-42
Identities = 79/145 (54%), Positives = 106/145 (73%)
Frame = +2
Query: 431 NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 610
NP EG AG +++ + + WE LI+GP DT +E GVF A L+FP DYPL PPKM+F E++
Sbjct: 19 NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAVLSFPLDYPLSPPKMRFTCEMF 78
Query: 611 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV 790
HPN+ +G VCISILH PG+D GYE ERW P+ +VE I++SV+SMLA+PN +S ANV
Sbjct: 79 HPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANV 138
Query: 791 DAAKEWREDRNGEFKRKVARCVRKS 865
DA+K WR+DR +F + + V+KS
Sbjct: 139 DASKMWRDDRE-QFYKIAKQIVQKS 162
>ref|XP_003360983.1| PREDICTED: ubiquitin-conjugating enzyme E2 R1-like, partial [Sus
scrofa].
Length = 252
Score = 122 bits (306), Expect = 4e-28
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Frame = +2
Query: 527 GGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERW 706
GG FKA L FP DYP PP +F+T++WHPN+ + GDVCISILH P +D E P ERW
Sbjct: 87 GGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERW 146
Query: 707 LPIHTVETIMISVISMLADPNGDSPANVDAA---KEWREDRNGEFKRKV 844
P V TI++SVIS+L +PN SPANVDA+ ++W+E + + +++V
Sbjct: 147 NPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGRDREKQV 195
>ref|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D2-like [Sus scrofa].
Length = 147
Score = 113 bits (283), Expect = 2e-25
Identities = 56/149 (37%), Positives = 87/149 (58%)
Frame = +2
Query: 425 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 604
+++P + SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T+
Sbjct: 14 SRDPPDQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPSDYPFKPPKIAFTTQ 72
Query: 605 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 784
I+HPN+++NG++C+ IL W P T+ +++S+ SML DPN D P
Sbjct: 73 IYHPNINRNGNICLDIL-------------RSEWSPALTISKVLLSICSMLCDPNPDDPL 119
Query: 785 NVDAAKEWREDRNGEFKRKVARCVRKSQE 871
+ AK + +DR RK R R+ E
Sbjct: 120 VPEIAKIYTKDR-----RKYDRIAREWTE 143
>ref|NP_001072142.1| UB2D1 [Sus scrofa].
Length = 147
Score = 113 bits (282), Expect = 2e-25
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
D A+ ++ D+
Sbjct: 121 PDIAQIYKSDK 131
>ref|XP_001928631.1| PREDICTED: ubiquitin-conjugating enzyme E2 N-like [Sus scrofa].
Length = 152
Score = 109 bits (273), Expect = 3e-24
Identities = 49/131 (37%), Positives = 80/131 (61%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
K P+ G A D+ + + + V+I GP D+ +EGG FK L P++YP++PPK +F+T+I
Sbjct: 17 KEPIPGIKAEP-DETNAHYFHVVIDGPQDSPFEGGTFKLELFVPEEYPIKPPKARFVTKI 75
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN+DK G +C+ IL +E W P + T+++S+ ++L DPN D P
Sbjct: 76 YHPNIDKLGRICLDIL-------------KENWSPALQIRTVLLSIQALLGDPNPDDPLA 122
Query: 788 VDAAKEWREDR 820
D AK+W+ ++
Sbjct: 123 YDVAKQWKTNK 133
>ref|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D4-like [Sus scrofa].
Length = 147
Score = 108 bits (270), Expect = 6e-24
Identities = 51/131 (38%), Positives = 77/131 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
+ A ++ DR
Sbjct: 121 PEIAHTYKADR 131
>ref|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 2 [Sus
scrofa].
Length = 147
Score = 107 bits (268), Expect = 1e-23
Identities = 49/132 (37%), Positives = 78/132 (59%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 121 PEIARIYKTDRD 132
>ref|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 1 [Sus
scrofa].
Length = 147
Score = 107 bits (268), Expect = 1e-23
Identities = 49/132 (37%), Positives = 78/132 (59%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 121 PEIARIYKTDRD 132
>ref|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scrofa].
Length = 147
Score = 107 bits (268), Expect = 1e-23
Identities = 49/132 (37%), Positives = 78/132 (59%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 121 PEIARIYKTDRD 132
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,045,652
Number of extensions: 698775
Number of successful extensions: 2524
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 2485
Number of HSP's successfully gapped: 45
Length of query: 404
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,829,335
Effective search space: 2675288505
Effective search space used: 2675288505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012826
(1212 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080261.2| ubiquitin-conjugating enzyme E2 G1 [Mus musculu... 327 1e-89
Alignment gi|NP_080551.1| ubiquitin-conjugating enzyme E2 R2 [Mus musculu... 174 1e-43
Alignment gi|NP_062777.2| ubiquitin-conjugating enzyme E2 G2 [Mus musculu... 170 2e-42
Alignment gi|NP_808281.1| ubiquitin-conjugating enzyme E2 R1 [Mus musculu... 166 3e-41
Alignment gi|NP_663395.1| ubiquitin-conjugating enzyme E2 D1 [Mus musculu... 113 3e-25
Alignment gi|NP_001075130.1| ubiquitin-conjugating enzyme E2D 2-like [Mus... 108 1e-23
Alignment gi|NP_064296.1| ubiquitin-conjugating enzyme E2 D2 [Mus musculu... 107 1e-23
Alignment gi|NP_079632.1| ubiquitin-conjugating enzyme E2 D3 [Mus musculu... 107 1e-23
Alignment gi|NP_033484.3| ubiquitin-conjugating enzyme E2 B [Mus musculus]. 100 3e-21
Alignment gi|NP_062642.1| ubiquitin-conjugating enzyme E2 A [Mus musculus]. 100 4e-21
>ref|NP_080261.2| ubiquitin-conjugating enzyme E2 G1 [Mus musculus].
Length = 170
Score = 327 bits (837), Expect = 1e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +2
Query: 425 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 604
NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE
Sbjct: 18 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 77
Query: 605 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 784
IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA
Sbjct: 78 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 137
Query: 785 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 883
NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE
Sbjct: 138 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 170
>ref|NP_080551.1| ubiquitin-conjugating enzyme E2 R2 [Mus musculus].
Length = 238
Score = 174 bits (441), Expect = 1e-43
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D++DLY WEV I GPP+TLYEGG FKAH+ FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ +NGDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++WR+ + + ++ A +RK
Sbjct: 142 VDASVMFRKWRDSKGKD--KEYAEIIRK 167
>ref|NP_062777.2| ubiquitin-conjugating enzyme E2 G2 [Mus musculus].
Length = 165
Score = 170 bits (430), Expect = 2e-42
Identities = 79/145 (54%), Positives = 106/145 (73%)
Frame = +2
Query: 431 NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 610
NP EG AG +++ + + WE LI+GP DT +E GVF A L+FP DYPL PPKM+F E++
Sbjct: 19 NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMF 78
Query: 611 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV 790
HPN+ +G VCISILH PG+D GYE ERW P+ +VE I++SV+SMLA+PN +S ANV
Sbjct: 79 HPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANV 138
Query: 791 DAAKEWREDRNGEFKRKVARCVRKS 865
DA+K WR+DR +F + + V+KS
Sbjct: 139 DASKMWRDDRE-QFYKIAKQIVQKS 162
>ref|NP_808281.1| ubiquitin-conjugating enzyme E2 R1 [Mus musculus].
Length = 235
Score = 166 bits (421), Expect = 3e-41
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D+ DLY WEV I GPP+T YEGG FKA L FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ + GDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++W+E + + R+ +RK
Sbjct: 142 VDASVMYRKWKESKGKD--REYTDIIRK 167
>ref|NP_663395.1| ubiquitin-conjugating enzyme E2 D1 [Mus musculus].
Length = 147
Score = 113 bits (282), Expect = 3e-25
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
D A+ ++ D+
Sbjct: 121 PDIAQIYKSDK 131
>ref|NP_001075130.1| ubiquitin-conjugating enzyme E2D 2-like [Mus musculus].
Length = 155
Score = 108 bits (269), Expect = 1e-23
Identities = 49/131 (37%), Positives = 79/131 (60%)
Frame = +2
Query: 425 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 604
+++P SAG + +N ++ W+ I+GP D+ Y+GGVF + FP +YP +PPK+ FIT
Sbjct: 22 SQDPPAHCSAGPVAEN-MFHWQATIMGPEDSPYQGGVFFLSVHFPNNYPFKPPKVTFITR 80
Query: 605 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 784
++HPN+ KNG +C+ IL+ W P T+ +++S+ S+L DPN D P
Sbjct: 81 VYHPNISKNGSICLDILN-------------SMWSPALTISKLLLSICSLLCDPNPDDPL 127
Query: 785 NVDAAKEWRED 817
+ AK +R+D
Sbjct: 128 VPEIAKVYRKD 138
>ref|NP_064296.1| ubiquitin-conjugating enzyme E2 D2 [Mus musculus].
Length = 147
Score = 107 bits (268), Expect = 1e-23
Identities = 52/141 (36%), Positives = 82/141 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRNGEFKRKVAR 850
+ A+ ++ DR E ++AR
Sbjct: 121 PEIARIYKTDR--EKYNRIAR 139
>ref|NP_079632.1| ubiquitin-conjugating enzyme E2 D3 [Mus musculus].
Length = 147
Score = 107 bits (268), Expect = 1e-23
Identities = 49/132 (37%), Positives = 78/132 (59%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 121 PEIARIYKTDRD 132
>ref|NP_033484.3| ubiquitin-conjugating enzyme E2 B [Mus musculus].
Length = 152
Score = 100 bits (248), Expect = 3e-21
Identities = 49/146 (33%), Positives = 90/146 (61%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P G S G +N++ +W +I GP T +E G FK + F ++YP +PP ++F++++
Sbjct: 18 EDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM 76
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPNV +G +C+ IL + RW P + V +I+ S+ S+L +PN +SPAN
Sbjct: 77 FHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPAN 123
Query: 788 VDAAKEWREDRNGEFKRKVARCVRKS 865
AA+ ++E++ E++++V+ V +S
Sbjct: 124 SQAAQLYQENKR-EYEKRVSAIVEQS 148
>ref|NP_062642.1| ubiquitin-conjugating enzyme E2 A [Mus musculus].
Length = 152
Score = 99.8 bits (247), Expect = 4e-21
Identities = 49/146 (33%), Positives = 89/146 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P G S G +N++ W +I GP T +E G FK + F ++YP +PP ++F++++
Sbjct: 18 EDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKM 76
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPNV +G +C+ IL + RW P + V +I+ S+ S+L +PN +SPAN
Sbjct: 77 FHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPAN 123
Query: 788 VDAAKEWREDRNGEFKRKVARCVRKS 865
AA+ ++E++ E++++V+ V +S
Sbjct: 124 SQAAQLYQENKR-EYEKRVSAIVEQS 148
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,628,624
Number of extensions: 936118
Number of successful extensions: 2951
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 2899
Number of HSP's successfully gapped: 60
Length of query: 404
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 300
Effective length of database: 12,493,815
Effective search space: 3748144500
Effective search space used: 3748144500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012826
(1212 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003333.1| ubiquitin-conjugating enzyme E2 G1 [Homo sapien... 327 2e-89
Alignment gi|NP_060281.2| ubiquitin-conjugating enzyme E2 R2 [Homo sapien... 174 1e-43
Alignment gi|NP_003334.2| ubiquitin-conjugating enzyme E2 G2 isoform 1 [H... 170 3e-42
Alignment gi|NP_004350.1| ubiquitin-conjugating enzyme E2 R1 [Homo sapien... 166 3e-41
Alignment gi|NP_872630.1| ubiquitin-conjugating enzyme E2 G2 isoform 2 [H... 159 4e-39
Alignment gi|NP_003329.1| ubiquitin-conjugating enzyme E2 D1 isoform 1 [H... 113 4e-25
Alignment gi|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapien... 108 1e-23
Alignment gi|NP_001189418.1| ubiquitin-conjugating enzyme E2 G2 isoform 3... 108 1e-23
Alignment gi|NP_871622.1| ubiquitin-conjugating enzyme E2 D3 isoform 3 [H... 107 2e-23
Alignment gi|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 107 2e-23
>ref|NP_003333.1| ubiquitin-conjugating enzyme E2 G1 [Homo sapiens].
Length = 170
Score = 327 bits (837), Expect = 2e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +2
Query: 425 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 604
NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE
Sbjct: 18 NKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE 77
Query: 605 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 784
IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA
Sbjct: 78 IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPA 137
Query: 785 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 883
NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE
Sbjct: 138 NVDAAKEWREDRNGEFKRKVARCVRKSQETAFE 170
>ref|NP_060281.2| ubiquitin-conjugating enzyme E2 R2 [Homo sapiens].
Length = 238
Score = 174 bits (441), Expect = 1e-43
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D++DLY WEV I GPP+TLYEGG FKAH+ FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ +NGDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++WR+ + + ++ A +RK
Sbjct: 142 VDASVMFRKWRDSKGKD--KEYAEIIRK 167
>ref|NP_003334.2| ubiquitin-conjugating enzyme E2 G2 isoform 1 [Homo sapiens].
Length = 165
Score = 170 bits (430), Expect = 3e-42
Identities = 79/145 (54%), Positives = 106/145 (73%)
Frame = +2
Query: 431 NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 610
NP EG AG +++ + + WE LI+GP DT +E GVF A L+FP DYPL PPKM+F E++
Sbjct: 19 NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMF 78
Query: 611 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANV 790
HPN+ +G VCISILH PG+D GYE ERW P+ +VE I++SV+SMLA+PN +S ANV
Sbjct: 79 HPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANV 138
Query: 791 DAAKEWREDRNGEFKRKVARCVRKS 865
DA+K WR+DR +F + + V+KS
Sbjct: 139 DASKMWRDDRE-QFYKIAKQIVQKS 162
>ref|NP_004350.1| ubiquitin-conjugating enzyme E2 R1 [Homo sapiens].
Length = 236
Score = 166 bits (421), Expect = 3e-41
Identities = 78/148 (52%), Positives = 101/148 (68%), Gaps = 3/148 (2%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
+ PVEGF L+D+ DLY WEV I GPP+T YEGG FKA L FP DYP PP +F+T++
Sbjct: 22 EEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 81
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
WHPN+ + GDVCISILH P +D E P ERW P V TI++SVIS+L +PN SPAN
Sbjct: 82 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN 141
Query: 788 VDAA---KEWREDRNGEFKRKVARCVRK 862
VDA+ ++W+E + + R+ +RK
Sbjct: 142 VDASVMYRKWKESKGKD--REYTDIIRK 167
>ref|NP_872630.1| ubiquitin-conjugating enzyme E2 G2 isoform 2 [Homo sapiens].
Length = 137
Score = 159 bits (403), Expect = 4e-39
Identities = 73/135 (54%), Positives = 100/135 (74%)
Frame = +2
Query: 461 IDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDV 640
+++ + + WE LI+GP DT +E GVF A L+FP DYPL PPKM+F E++HPN+ +G V
Sbjct: 1 MNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRV 60
Query: 641 CISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 820
CISILH PG+D GYE ERW P+ +VE I++SV+SMLA+PN +S ANVDA+K WR+DR
Sbjct: 61 CISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR 120
Query: 821 NGEFKRKVARCVRKS 865
+F + + V+KS
Sbjct: 121 E-QFYKIAKQIVQKS 134
>ref|NP_003329.1| ubiquitin-conjugating enzyme E2 D1 isoform 1 [Homo sapiens].
Length = 147
Score = 113 bits (282), Expect = 4e-25
Identities = 52/131 (39%), Positives = 79/131 (60%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
D A+ ++ D+
Sbjct: 121 PDIAQIYKSDK 131
>ref|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapiens].
Length = 147
Score = 108 bits (270), Expect = 1e-23
Identities = 51/131 (38%), Positives = 77/131 (58%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D DL+ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T+I
Sbjct: 15 RDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P TV +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDR 820
+ A ++ DR
Sbjct: 121 PEIAHTYKADR 131
>ref|NP_001189418.1| ubiquitin-conjugating enzyme E2 G2 isoform 3 [Homo sapiens].
Length = 95
Score = 108 bits (269), Expect = 1e-23
Identities = 50/93 (53%), Positives = 69/93 (74%)
Frame = +2
Query: 587 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 766
M+F E++HPN+ +G VCISILH PG+D GYE ERW P+ +VE I++SV+SMLA+P
Sbjct: 1 MRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEP 60
Query: 767 NGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 865
N +S ANVDA+K WR+DR +F + + V+KS
Sbjct: 61 NDESGANVDASKMWRDDRE-QFYKIAKQIVQKS 92
>ref|NP_871622.1| ubiquitin-conjugating enzyme E2 D3 isoform 3 [Homo sapiens].
Length = 149
Score = 107 bits (268), Expect = 2e-23
Identities = 49/132 (37%), Positives = 78/132 (59%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 17 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 76 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 123 PEIARIYKTDRD 134
>ref|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 49/132 (37%), Positives = 78/132 (59%)
Frame = +2
Query: 428 KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 607
++P SAG + D D++ W+ I+GP D+ Y+GGVF + FP DYP +PPK+ F T I
Sbjct: 15 RDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 73
Query: 608 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPAN 787
+HPN++ NG +C+ IL +W P T+ +++S+ S+L DPN D P
Sbjct: 74 YHPNINSNGSICLDIL-------------RSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 788 VDAAKEWREDRN 823
+ A+ ++ DR+
Sbjct: 121 PEIARIYKTDRD 132
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,104,128
Number of extensions: 1109342
Number of successful extensions: 3603
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 3552
Number of HSP's successfully gapped: 61
Length of query: 404
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,835,944
Effective search space: 4435947256
Effective search space used: 4435947256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012826
(1212 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 799 0.0
Sscrofa_Chr14 121 9e-25
>Sscrofa_Chr12
|| Length = 63588571
Score = 799 bits (403), Expect = 0.0
Identities = 413/415 (99%), Gaps = 1/415 (0%)
Strand = Plus / Plus
Query: 1 cttccgaagtaggcagccccagcgcgcctgcgcggagcggccctgggcgcagtgagccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52194142 cttccgaagtaggcagccccagcgcgcctgcgcggagcggccctgggcgcagtgagccag 52194201
Query: 61 tggcgggggaaggcaccggtggggccgacgggcgggttgaaggagggaagcgggcgagcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52194202 tggcgggggaaggcaccggtggggccgacgggcgggttgaaggagggaagcgggcgagcg 52194261
Query: 121 aagtcccagtgcgcgccgcggcggcacgggtaccctccccttccgggcgtgaggcgctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52194262 aagtcccagtgcgcgccgcggcggcacgggtaccctccccttccgggcgtgaggcgctgt 52194321
Query: 181 gaggaaagctgaagcgagcggactcacaccggcagcgaggcgccgctaccgccgccccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52194322 gaggaaagctgaagcgagcggactcacaccggcagcgaggcgccgctaccgccgccccag 52194381
Query: 241 cccagcctccctcggcttcggcgctcccgtcgtgggggtccgggttcctcagcacaccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52194382 cccagcctccctcggcttcggcgctcccgtcgtgggggtccgggttcctcagcacaccca 52194441
Query: 301 gctccagcagccccagagcctgtccccagtccttcgaaagccccggcgccagtccgggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52194442 gctccagcagccccagagcctgtccccagtccttcgaaagccccggcgccagtccgggcc 52194501
Query: 361 cttggcggggaggatgacggagctgcagtcggcactgctactgcgaagacagctg 415
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 52194502 c-tggcggggaggatgacggagctgcagtcggcactgctactgcgaaaacagctg 52194555
Score = 553 bits (279), Expect = e-155
Identities = 288/291 (98%)
Strand = Plus / Plus
Query: 922 ggtctccaatgagaaacatggcactgtttttcctgcactctacccacctattgctggact 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52276935 ggtctccaatgagaaacatggcactgtttttcctgcactctacccacctattgctggact 52276994
Query: 982 tctgatgtaacaagttggcaaacactggctggaactgggctgcaataaaacatgccagta 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52276995 tctgatgtaacaagttggcaaacactggctggaactgggctgcaataaaacatgccagta 52277054
Query: 1042 tcaatgctgacaagagcctaacaagtgccaacttacagatgattacgcattttgaattct 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52277055 tcaatgctgacaagagcctaacaagtgccaacttacagatgattacgcattttgaattct 52277114
Query: 1102 aatgaactgttttaaccttcaggaagaattgtaaagacctgtacatagcacaacatgatc 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52277115 aatgaactgttttaaccttcaggaagaattgtaaagacctgtacatagcacaacatgatc 52277174
Query: 1162 cggaatatatatatactggtcatgtacatccacaaatacaccttgtaccaa 1212
|||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 52277175 cggataatatatatactgttcatgtacatccacaaatacaccttgtaccaa 52277225
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 620 gttgataaaaatggtgatgtgtgcatttctattcttcatgagcccggagaagataaatat 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52267682 gttgataaaaatggtgatgtgtgcatttctattcttcatgagcccggagaagataaatat 52267741
Query: 680 ggttatgaaaagccagaggaacgctggctgcctattcacaccgtggaaaccatcatgatt 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52267742 ggttatgaaaagccagaggaacgctggctgcctattcacaccgtggaaaccatcatgatt 52267801
Query: 740 agtgtcatttctatgctggcagaccctaatggcgactcgcctgctaatgtggacgctgcg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52267802 agtgtcatttctatgctggcagaccctaatggcgactcgcctgctaatgtggacgctgcg 52267861
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 799 gaaagaatggagagaagacagaaatggagaattcaaaaggaaagtcgcccgctgtgtaag 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52271165 gaaagaatggagagaagacagaaatggagaattcaaaaggaaagtcgcccgctgtgtaag 52271224
Query: 859 aaaaagccaagagactgcttttgagtgacatttattcaacagctgtaacttcacttattt 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52271225 aaaaagccaagagactgcttttgagtgacatttattcaacagctgtaacttcacttattt 52271284
Query: 919 cagggt 924
||||||
Sbjct: 52271285 cagggt 52271290
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 417 cagaactcaacaaaaatccagtggaaggcttttcagcaggtttaatagatgacaatgatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52254453 cagaactcaacaaaaatccagtggaaggcttttcagcaggtttaatagatgacaatgatc 52254512
Query: 477 tctaccgatgggaagtccttattattggtcctccagatacacttta 522
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52254513 tctaccgatgggaagtccttattattggtcctccagatacacttta 52254558
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 523 tgaaggtggtgtttttaaggctcatctcactttcccaaaagattatcctcttcggcctcc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52264072 tgaaggtggtgtttttaaggctcatctcactttcccaaaagattatcctcttcggcctcc 52264131
Query: 583 taaaatgaaattcattacagaaatctggcatccaaatg 620
||||||||||||||||||||||||||||||||||||||
Sbjct: 52264132 taaaatgaaattcattacagaaatctggcatccaaatg 52264169
>Sscrofa_Chr14
|| Length = 153851969
Score = 121 bits (61), Expect = 9e-25
Identities = 172/205 (83%), Gaps = 8/205 (3%)
Strand = Plus / Minus
Query: 856 aagaaaaagccaagagactgcttttgagtgacatttattcaaca-gctgtaacttcactt 914
||||||||||||||||||||||||||||||| ||||||||| || | ||||||| ||||
Sbjct: 60002771 aagaaaaagccaagagactgcttttgagtgaaatttattcagcatccagtaactttactt 60002712
Query: 915 atttcagggtct-ccaatgagaaacatggcactgtttttcctgcactctacccacctatt 973
|||| ||||||| ||| ||||||| ||||||||||| ||||||| ||| || ||||||
Sbjct: 60002711 atttgagggtctcccattgagaaaggtggcactgtttctcctgcattcttcctgcctatt 60002652
Query: 974 gctggacttctgatgtaacaagttggcaaacactggctggaactgggctgcaataaaaca 1033
| ||| | ||||||||||||||| ||||| ||||||||||||| | ||||||||
Sbjct: 60002651 g-----ctttttttgtaacaagttggcagacactaactggaactgggctaccataaaaca 60002597
Query: 1034 tgccag-tatcaatgctgacaagag 1057
|||| | ||||| || |||||||||
Sbjct: 60002596 tgccggttatcagtgatgacaagag 60002572
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,607,046
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 8
Length of query: 1212
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1191
Effective length of database: 2,808,413,156
Effective search space: 3344820068796
Effective search space used: 3344820068796
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)