Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012827
(2196 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030463.1| catalase [Bos taurus]. 1040 0.0
>ref|NP_001030463.1| catalase [Bos taurus].
Length = 527
Score = 1040 bits (2690), Expect = 0.0
Identities = 491/527 (93%), Positives = 507/527 (96%)
Frame = +1
Query: 112 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 291
MADNRDPASDQMKHWKEQRAAQKPD+LTTG GNP+GDKLN LT GPRGPLLVQDVVFTDE
Sbjct: 1 MADNRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDE 60
Query: 292 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 471
MAHFDRERIPERVVHAKGAGAFGYFEVTHDITR+SKAKVFEH+GKRTPIAVRFSTVAGES
Sbjct: 61 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGES 120
Query: 472 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 651
GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDA+LFPSFIHSQKRNPQTHLKDPD
Sbjct: 121 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPD 180
Query: 652 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 831
MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVN GEAVYCKFHYKTDQ
Sbjct: 181 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQ 240
Query: 832 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 1011
GIKNLSVEDAARL+ EDPDYG+RDLFNAIATGNYPSWT YIQVMTF EAE FPFNPFDLT
Sbjct: 241 GIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLT 300
Query: 1012 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 1191
KVWPH +YPLIPVGKLVLNRNPVNYFAEVEQ+AFDPSNMPPGIEPSPDKMLQGRLFAYPD
Sbjct: 301 KVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPD 360
Query: 1192 THRHRLGPNYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE 1371
THRHRLGPNYLQIPVNCP+RARVANYQRDGPMC DNQGGAPNYYPNSFSAPE SALE
Sbjct: 361 THRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALE 420
Query: 1372 HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 1551
H T +SGDVQRFNSAN+DNVTQVRTFYL VLNEE+RKRLCENIAGHLKDAQLFIQKKAVK
Sbjct: 421 HRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVK 480
Query: 1552 NFSDVHPDYGARIQALLDKYNAEKPKNAVHTYVQAGSHLAAREKANL 1692
NFSDVHP+YG+RIQALLDKYN EKPKNAVHTYVQ GSHL+AREKANL
Sbjct: 481 NFSDVHPEYGSRIQALLDKYNEEKPKNAVHTYVQHGSHLSAREKANL 527
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 87,485,235
Number of extensions: 2554115
Number of successful extensions: 7274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7264
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 622
Effective length of database: 14,041,694
Effective search space: 8733933668
Effective search space used: 8733933668
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012827
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012827
(2196 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002984.1| catalase [Canis lupus familiaris]. 1037 0.0
>ref|NP_001002984.1| catalase [Canis lupus familiaris].
Length = 527
Score = 1037 bits (2681), Expect = 0.0
Identities = 491/527 (93%), Positives = 507/527 (96%)
Frame = +1
Query: 112 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 291
MAD+RDPASDQMK WKEQRAAQKPD+LTTG GNPIGDKLN++TAGPRGPLLVQDVVFTDE
Sbjct: 1 MADSRDPASDQMKLWKEQRAAQKPDVLTTGGGNPIGDKLNVMTAGPRGPLLVQDVVFTDE 60
Query: 292 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 471
MAHFDRERIPERVVHAKGAGAFGYFEVTHDIT++SKAKVFEH+GKRTPIAVRFSTVAGES
Sbjct: 61 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKRTPIAVRFSTVAGES 120
Query: 472 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 651
GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD
Sbjct: 121 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 180
Query: 652 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 831
MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVN GEAVYCKFHYKTDQ
Sbjct: 181 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNAAGEAVYCKFHYKTDQ 240
Query: 832 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 1011
GIKNLSVEDAARLS EDPDYG+RDLFNAIATGNYPSWTFYIQVMTF +AE FPFNPFDLT
Sbjct: 241 GIKNLSVEDAARLSHEDPDYGLRDLFNAIATGNYPSWTFYIQVMTFSQAETFPFNPFDLT 300
Query: 1012 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 1191
K+WPH +YPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD
Sbjct: 301 KIWPHQDYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 360
Query: 1192 THRHRLGPNYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE 1371
THRHRLGPNYLQIPVNCPFRARVANYQRDGPMC DNQGGAPNYYPNSFSAPEQ LE
Sbjct: 361 THRHRLGPNYLQIPVNCPFRARVANYQRDGPMCMLDNQGGAPNYYPNSFSAPEQQRCVLE 420
Query: 1372 HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 1551
H ++ S DVQRFNSANEDNVTQVRTFYL VL EEERKRLCENIAGHLKDAQLFIQKKAVK
Sbjct: 421 HSSQCSPDVQRFNSANEDNVTQVRTFYLKVLGEEERKRLCENIAGHLKDAQLFIQKKAVK 480
Query: 1552 NFSDVHPDYGARIQALLDKYNAEKPKNAVHTYVQAGSHLAAREKANL 1692
NFSDVHPDYGARIQALLDKYNAEKPKNA+HT++Q GSHLAAREKANL
Sbjct: 481 NFSDVHPDYGARIQALLDKYNAEKPKNAIHTFMQHGSHLAAREKANL 527
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 90,969,491
Number of extensions: 2554304
Number of successful extensions: 7430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7417
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 622
Effective length of database: 15,207,544
Effective search space: 9459092368
Effective search space used: 9459092368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012827
(2196 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999466.1| catalase [Sus scrofa]. 1047 0.0
Alignment gi|XP_003353960.1| PREDICTED: catalase-like, partial [Sus scrof... 737 0.0
>ref|NP_999466.1| catalase [Sus scrofa].
Length = 503
Score = 1047 bits (2708), Expect = 0.0
Identities = 500/503 (99%), Positives = 500/503 (99%)
Frame = +1
Query: 112 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 291
MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE
Sbjct: 1 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 60
Query: 292 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 471
MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES
Sbjct: 61 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 120
Query: 472 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 651
GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD
Sbjct: 121 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 180
Query: 652 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 831
MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ
Sbjct: 181 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 240
Query: 832 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 1011
GIKNLSVEDAARL QEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT
Sbjct: 241 GIKNLSVEDAARLPQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 300
Query: 1012 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 1191
KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLF YPD
Sbjct: 301 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFGYPD 360
Query: 1192 THRHRLGPNYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE 1371
THRHRLG NYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE
Sbjct: 361 THRHRLGANYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE 420
Query: 1372 HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 1551
HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK
Sbjct: 421 HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 480
Query: 1552 NFSDVHPDYGARIQALLDKYNAE 1620
NFSDVHPDYGARIQALLDKYNAE
Sbjct: 481 NFSDVHPDYGARIQALLDKYNAE 503
>ref|XP_003353960.1| PREDICTED: catalase-like, partial [Sus scrofa].
Length = 352
Score = 737 bits (1903), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Frame = +1
Query: 112 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 291
MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE
Sbjct: 1 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 60
Query: 292 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 471
MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES
Sbjct: 61 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 120
Query: 472 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 651
GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD
Sbjct: 121 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 180
Query: 652 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 831
MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ
Sbjct: 181 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 240
Query: 832 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 1011
GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT
Sbjct: 241 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 300
Query: 1012 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQ 1167
KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQ
Sbjct: 301 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQ 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 57,181,017
Number of extensions: 1756558
Number of successful extensions: 4586
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4583
Number of HSP's successfully gapped: 2
Length of query: 732
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 626
Effective length of database: 8,704,850
Effective search space: 5449236100
Effective search space used: 5449236100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012827
(2196 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033934.2| catalase [Mus musculus]. 1021 0.0
>ref|NP_033934.2| catalase [Mus musculus].
Length = 527
Score = 1021 bits (2640), Expect = 0.0
Identities = 481/527 (91%), Positives = 503/527 (95%)
Frame = +1
Query: 112 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 291
M+D+RDPASDQMK WKEQRA+Q+PD+LTTG GNPIGDKLNI+TAG RGPLLVQDVVFTDE
Sbjct: 1 MSDSRDPASDQMKQWKEQRASQRPDVLTTGGGNPIGDKLNIMTAGSRGPLLVQDVVFTDE 60
Query: 292 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 471
MAHFDRERIPERVVHAKGAGAFGYFEVTHDITR+SKAKVFEH+GKRTPIAVRFSTV GES
Sbjct: 61 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVTGES 120
Query: 472 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 651
GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD
Sbjct: 121 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 180
Query: 652 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 831
MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVN GEAVYCKFHYKTDQ
Sbjct: 181 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNADGEAVYCKFHYKTDQ 240
Query: 832 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 1011
GIKNL V +A RL+QEDPDYG+RDLFNAIA GNYPSWTFYIQVMTF+EAE FPFNPFDLT
Sbjct: 241 GIKNLPVGEAGRLAQEDPDYGLRDLFNAIANGNYPSWTFYIQVMTFKEAETFPFNPFDLT 300
Query: 1012 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 1191
KVWPH +YPLIPVGKLVLN+NPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD
Sbjct: 301 KVWPHKDYPLIPVGKLVLNKNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 360
Query: 1192 THRHRLGPNYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE 1371
THRHRLGPNYLQIPVNCP+RARVANYQRDGPMC DNQGGAPNYYPNSFSAPEQ SALE
Sbjct: 361 THRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMHDNQGGAPNYYPNSFSAPEQQRSALE 420
Query: 1372 HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 1551
H + + DV+RFNSANEDNVTQVRTFY VLNEEERKRLCENIAGHLKDAQLFIQKKAVK
Sbjct: 421 HSVQCAVDVKRFNSANEDNVTQVRTFYTKVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 480
Query: 1552 NFSDVHPDYGARIQALLDKYNAEKPKNAVHTYVQAGSHLAAREKANL 1692
NF+DVHPDYGARIQALLDKYNAEKPKNA+HTY QAGSH+AA+ KANL
Sbjct: 481 NFTDVHPDYGARIQALLDKYNAEKPKNAIHTYTQAGSHMAAKGKANL 527
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 75,550,870
Number of extensions: 2104392
Number of successful extensions: 6102
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6064
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 623
Effective length of database: 12,343,635
Effective search space: 7690084605
Effective search space used: 7690084605
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012827
(2196 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001743.1| catalase [Homo sapiens]. 1026 0.0
>ref|NP_001743.1| catalase [Homo sapiens].
Length = 527
Score = 1026 bits (2652), Expect = 0.0
Identities = 479/527 (90%), Positives = 508/527 (96%)
Frame = +1
Query: 112 MADNRDPASDQMKHWKEQRAAQKPDILTTGSGNPIGDKLNILTAGPRGPLLVQDVVFTDE 291
MAD+RDPASDQM+HWKEQRAAQK D+LTTG+GNP+GDKLN++T GPRGPLLVQDVVFTDE
Sbjct: 1 MADSRDPASDQMQHWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDE 60
Query: 292 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITRFSKAKVFEHVGKRTPIAVRFSTVAGES 471
MAHFDRERIPERVVHAKGAGAFGYFEVTHDIT++SKAKVFEH+GK+TPIAVRFSTVAGES
Sbjct: 61 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGES 120
Query: 472 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDAILFPSFIHSQKRNPQTHLKDPD 651
GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRD ILFPSFIHSQKRNPQTHLKDPD
Sbjct: 121 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPD 180
Query: 652 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQ 831
MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVN GEAVYCKFHYKTDQ
Sbjct: 181 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQ 240
Query: 832 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLT 1011
GIKNLSVEDAARLSQEDPDYGIRDLFNAIATG YPSWTFYIQVMTF +AE FPFNPFDLT
Sbjct: 241 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLT 300
Query: 1012 KVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKMLQGRLFAYPD 1191
KVWPH +YPLIPVGKLVLNRNPVNYFAEVEQ+AFDPSNMPPGIE SPDKMLQGRLFAYPD
Sbjct: 301 KVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPD 360
Query: 1192 THRHRLGPNYLQIPVNCPFRARVANYQRDGPMCFQDNQGGAPNYYPNSFSAPEQTHSALE 1371
THRHRLGPNYL IPVNCP+RARVANYQRDGPMC QDNQGGAPNYYPNSF APEQ SALE
Sbjct: 361 THRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALE 420
Query: 1372 HCTRYSGDVQRFNSANEDNVTQVRTFYLNVLNEEERKRLCENIAGHLKDAQLFIQKKAVK 1551
H +YSG+V+RFN+AN+DNVTQVR FY+NVLNEE+RKRLCENIAGHLKDAQ+FIQKKAVK
Sbjct: 421 HSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVK 480
Query: 1552 NFSDVHPDYGARIQALLDKYNAEKPKNAVHTYVQAGSHLAAREKANL 1692
NF++VHPDYG+ IQALLDKYNAEKPKNA+HT+VQ+GSHLAAREKANL
Sbjct: 481 NFTEVHPDYGSHIQALLDKYNAEKPKNAIHTFVQSGSHLAAREKANL 527
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 89,184,246
Number of extensions: 2498932
Number of successful extensions: 7155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7140
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 622
Effective length of database: 14,671,124
Effective search space: 9125439128
Effective search space used: 9125439128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012827
(2196 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 452 e-124
>Sscrofa_Chr02
|| Length = 162569375
Score = 452 bits (228), Expect = e-124
Identities = 310/328 (94%), Gaps = 7/328 (2%)
Strand = Plus / Minus
Query: 1628 agaatgcagttcacacctatgtgcaggctggatctcacttggctgcaagggagaaagcta 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28861589 agaatgcagttcacacctatgtgcaggctggatctcacttggctgcaagggagaaagcta 28861530
Query: 1688 acctgtgagggtcgggggccctgatcctgccacaagttgccgtctgcctctgaagc-aaa 1746
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 28861529 acctgtgagggtcgggggccctgatcctgcaccaagttgccgtctgcctctgaagcaaaa 28861470
Query: 1747 catggaattcacacacatacccattcgtcactggatgcaagattctccctgtgctaaaca 1806
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 28861469 catggaattcacacacatacccattcgtcactggatgcaagattct-cctgtgctagaca 28861411
Query: 1807 tgcaaatgcaagcttctgtctgtaaaatgataatccaaggtttctggagcaaaataatgc 1866
|||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 28861410 tgcaaatgcaagcttctgtctgtaaaatgataatcc-aggtttctgtagc-aaataatgc 28861353
Query: 1867 aaaaatggctttgaaggctacttttccaaggggaaagtgaagggtagggcttgaacagtc 1926
|| |||||||||||| ||||| ||||| ||||| ||||||||| |||||| |||||||||
Sbjct: 28861352 aataatggctttgaatgctac-tttcctaggggtaagtgaaggttagggc-tgaacagtc 28861295
Query: 1927 attttaaggggaatgggtatttgccttt 1954
| ||||| ||||||| ||||||||||||
Sbjct: 28861294 a-tttaaagggaatgtgtatttgccttt 28861268
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 821 agactgaccagggcatcaaaaacctttccgttgaagatgcagcaagactttcccaggaag 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28878036 agactgaccagggcatcaaaaacctttccgttgaagatgcagcaagactttcccaggaag 28877977
Query: 881 atcctgactatggcatccgggacctttttaatgccattgccaccggcaactatccctcct 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28877976 atcctgactatggcatccgggacctttttaatgccattgccaccggcaactatccctcct 28877917
Query: 941 ggactttttacatccaggtcatgacatttcaggaggcagaagcttttccatttaatcctt 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28877916 ggactttttacatccaggtcatgacatttcaggaggcagaagcttttccatttaatcctt 28877857
Query: 1001 ttgatcttaccaaggt 1016
||||||||||||||||
Sbjct: 28877856 ttgatcttaccaaggt 28877841
Score = 351 bits (177), Expect = 1e-93
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 1 acgaggaggcggggctgagtggctgagtccgaagtcgtctacttcaggcgcagggccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28900834 acgaggaggcggggctgagtggctgagtccgaagtcgtctacttcaggcgcagggccgga 28900775
Query: 61 gaccggcgagtggaggctgcctgcaacgttctgtaaggctagtcggacaccatggcggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28900774 gaccggcgagtggaggctgcctgcaacgttctgtaaggctagtcggacaccatggcggac 28900715
Query: 121 aaccgggatccagccagtgaccagatgaagcattggaaggagcagcgggccgcgcag 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28900714 aaccgggatccagccagtgaccagatgaagcattggaaggagcagcgggccgcgcag 28900658
Score = 347 bits (175), Expect = 2e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 176 agaaacctgatatcctgaccaccggctctgggaatccgataggagacaaactcaatattc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28886531 agaaacctgatatcctgaccaccggctctgggaatccgataggagacaaactcaatattc 28886472
Query: 236 tgacagcagggccccgagggccccttcttgttcaggatgtggttttcactgatgaaatgg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28886471 tgacagcagggccccgagggccccttcttgttcaggatgtggttttcactgatgaaatgg 28886412
Query: 296 ctcactttgaccgggagagaattcctgagagagttgtgcatgccaaaggagcagg 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28886411 ctcactttgaccgggagagaattcctgagagagttgtgcatgccaaaggagcagg 28886357
Score = 309 bits (156), Expect = 4e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 1013 aggtttggcctcacagcgaataccctcttatcccagttggtaaactggtcttaaaccgga 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28876799 aggtttggcctcacagcgaataccctcttatcccagttggtaaactggtcttaaaccgga 28876740
Query: 1073 atccagttaattattttgctgaggttgaacagatggcctttgacccgagcaacatgccac 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28876739 atccagttaattattttgctgaggttgaacagatggcctttgacccgagcaacatgccac 28876680
Query: 1133 ccggcattgagcccagccctgacaagatgctgcagg 1168
||||||||||||||||||||||||||||||||||||
Sbjct: 28876679 ccggcattgagcccagccctgacaagatgctgcagg 28876644
Score = 285 bits (144), Expect = 5e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1165 cagggccgcctatttgcctatcctgacactcaccgccaccgcctggggcccaactatctt 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28872323 cagggccgcctatttgcctatcctgacactcaccgccaccgcctggggcccaactatctt 28872264
Query: 1225 cagatacctgtgaactgtcccttccgtgctagggtggccaactaccagcgtgatggcccc 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28872263 cagatacctgtgaactgtcccttccgtgctagggtggccaactaccagcgtgatggcccc 28872204
Query: 1285 atgtgctttcaggacaatcaaggt 1308
||||||||||||||||||||||||
Sbjct: 28872203 atgtgctttcaggacaatcaaggt 28872180
Score = 270 bits (136), Expect = 3e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 1304 aaggtggggctccaaattactaccccaacagctttagtgctcccgaacagacgcattcgg 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28869367 aaggtggggctccaaattactaccccaacagctttagtgctcccgaacagacgcattcgg 28869308
Query: 1364 ccttggaacattgtacccgctattctggggacgtgcagcgcttcaacagtgccaacgaag 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28869307 ccttggaacattgtacccgctattctggggacgtgcagcgcttcaacagtgccaacgaag 28869248
Query: 1424 ataatgtcacccaggt 1439
||||||||||||||||
Sbjct: 28869247 ataatgtcacccaggt 28869232
Score = 262 bits (132), Expect = 7e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 460 gctggagaatcgggctcagctgacacagttcgtgaccctcgtgggtttgcagtgaaattt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28883833 gctggagaatcgggctcagctgacacagttcgtgaccctcgtgggtttgcagtgaaattt 28883774
Query: 520 tacacagaggatggtaattgggatctcgttggaaataatacccctattttcttcatcaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28883773 tacacagaggatggtaattgggatctcgttggaaataatacccctattttcttcatcaga 28883714
Query: 580 gatgccatattg 591
||||||||||||
Sbjct: 28883713 gatgccatattg 28883702
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 695 aggtttccttcctgttcagcgatcgagggattccagatggacacaggcacatgaacggat 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28881882 aggtttccttcctgttcagcgatcgagggattccagatggacacaggcacatgaacggat 28881823
Query: 755 atggatcgcacactttcaagctggttaatgagaagggagaggcggtttattgcaaattcc 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28881822 atggatcgcacactttcaagctggttaatgagaagggagaggcggtttattgcaaattcc 28881763
Query: 815 attataag 822
||||||||
Sbjct: 28881762 attataag 28881755
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 347 caggggcttttggctactttgaggtcacacacgacattaccagattctcgaaggcgaagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28885227 caggggcttttggctactttgaggtcacacacgacattaccagattctcgaaggcgaagg 28885168
Query: 407 tgtttgagcacgttggaaagaggacacccattgcagttcgtttctccaccgttg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28885167 tgtttgagcacgttggaaagaggacacccattgcagttcgtttctccaccgttg 28885114
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1435 caggtgcggactttctatttgaacgtactgaatgaggaggagaggaaacgcctgtgtgag 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28864107 caggtgcggactttctatttgaacgtactgaatgaggaggagaggaaacgcctgtgtgag 28864048
Query: 1495 aacattgcgggtcatctgaaagacgcacaactgttcatccagaagaaagcggt 1547
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28864047 aacattgcgggtcatctgaaagacgcacaactgttcatccagaagaaagcggt 28863995
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 591 gtttccatcctttatccacagccaaaagagaaaccctcagacacacctgaaggatccgga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28883114 gtttccatcctttatccacagccaaaagagaaaccctcagacacacctgaaggatccgga 28883055
Query: 651 catggtctgggacttctggagcctacgtcctgagtctctgcatcaggt 698
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28883054 catggtctgggacttctggagcctacgtcctgagtctctgcatcaggt 28883007
Score = 168 bits (85), Expect = 8e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1545 ggtcaagaacttcagtgacgtccatccggactatggggcccgcattcaggctcttctgga 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28862260 ggtcaagaacttcagtgacgtccatccggactatggggcccgcattcaggctcttctgga 28862201
Query: 1605 caaatacaatgctgagaaaccaaag 1629
|||||||||||||||||||||||||
Sbjct: 28862200 caaatacaatgctgagaaaccaaag 28862176
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,504,348
Number of extensions: 383
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 13
Length of query: 2196
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2174
Effective length of database: 2,808,408,574
Effective search space: 6105480239876
Effective search space used: 6105480239876
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)