Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012835
(1287 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803479.1| glycine N-acyltransferase [Bos taurus]. 459 e-129
Alignment gi|NP_803452.1| glycine N-phenylacetyltransferase [Bos taurus]. 402 e-112
Alignment gi|NP_001095518.1| hypothetical protein LOC518623 [Bos taurus]. 399 e-111
Alignment gi|NP_001178259.1| glycine N-acyltransferase-like protein 2 [Bo... 226 4e-59
Alignment gi|XP_002693817.1| PREDICTED: glycine-N-acyltransferase-like 2-... 226 4e-59
Alignment gi|NP_001138533.1| glycine N-acyltransferase-like protein 3 [Bo... 151 1e-36
>ref|NP_803479.1| glycine N-acyltransferase [Bos taurus].
Length = 295
Score = 459 bits (1181), Expect = e-129
Identities = 220/295 (74%), Positives = 246/295 (83%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MFLLQGAQMLQMLE SLRKSLP SLKVYGTV HMN GNPF LKALVDKWPDF TVVIRPQ
Sbjct: 1 MFLLQGAQMLQMLEKSLRKSLPMSLKVYGTVMHMNHGNPFNLKALVDKWPDFQTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQ+M DDLDHYTNTYH+YS+DLKNC+EFL LPEVINWK NEVIQ LAAT
Sbjct: 61 EQDMKDDLDHYTNTYHVYSEDLKNCQEFLDLPEVINWKQHLQIQSTQSSLNEVIQNLAAT 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
KSF V++++NILYM ETIKEL PSLLD KNL + DGKPKAID E F+LSS++PSHAA+V
Sbjct: 121 KSFKVKRSKNILYMASETIKELTPSLLDVKNLPVGDGKPKAIDPEMFKLSSVDPSHAAVV 180
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N+ W FGGNERS RFIERCI++FP+ CLLGPEGTP++WSLMDQTGEMRMAGT EYRAQG
Sbjct: 181 NRFWLFGGNERSLRFIERCIQSFPNFCLLGPEGTPVSWSLMDQTGEMRMAGTLPEYRAQG 240
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
LVT+ I+ +Q L K GFP YSHVD +N+IMQKMS +LNH+ MP WNQWNC PL
Sbjct: 241 LVTHAIYQQAQCLLKRGFPVYSHVDPKNQIMQKMSQSLNHVPMPSDWNQWNCEPL 295
>ref|NP_803452.1| glycine N-phenylacetyltransferase [Bos taurus].
Length = 296
Score = 402 bits (1032), Expect = e-112
Identities = 193/296 (65%), Positives = 228/296 (77%), Gaps = 1/296 (0%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MF LQG Q+LQMLE SLRKSLP SLKVYGTVFHMNQGNPF LKALVDKWPDF TVVIRPQ
Sbjct: 1 MFHLQGPQLLQMLEKSLRKSLPESLKVYGTVFHMNQGNPFNLKALVDKWPDFKTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEE-FLGLPEVINWKXXXXXXXXXXXXNEVIQKLAA 529
EQEM DD DHYTNTY IYSKDL NC+E L +VINWK NEV+Q LAA
Sbjct: 61 EQEMADDFDHYTNTYQIYSKDLNNCQESXLATSDVINWKQHLQIQSSQSSLNEVVQNLAA 120
Query: 530 TKSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAAL 709
TK V+ T+ ILY+ ET ++L PSL + KNL + G PKAI+QE F+LSS++P+HAAL
Sbjct: 121 TKFVKVEHTQCILYVMPETARKLLPSLPETKNLPVGYGAPKAINQEMFKLSSMDPTHAAL 180
Query: 710 VNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQ 889
VN+ W FGGNERSQRFIERCIR FP+ CLLGPEGTP +WSLMDQTGE+RM T EYR
Sbjct: 181 VNKFWHFGGNERSQRFIERCIRAFPTFCLLGPEGTPASWSLMDQTGEIRMGATLPEYRGH 240
Query: 890 GLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
GL+++++ H++ L +LG P Y+H D+ NKI+QK+SH L+H+ +P WNQWNC PL
Sbjct: 241 GLISHMLAVHTRALDQLGIPVYNHTDKANKIVQKVSHNLHHIAIPHGWNQWNCEPL 296
>ref|NP_001095518.1| hypothetical protein LOC518623 [Bos taurus].
Length = 295
Score = 399 bits (1025), Expect = e-111
Identities = 195/295 (66%), Positives = 226/295 (76%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M LQG QMLQMLE SLRKS+P SLKVYGT FH+NQGNPFKLKALVDKWPDFNTVVIRPQ
Sbjct: 1 MLHLQGPQMLQMLEKSLRKSIPASLKVYGTTFHINQGNPFKLKALVDKWPDFNTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQEMTDDLDHYTNTY +YSKD K C+EFLG PEVINWK ++VI+ LAAT
Sbjct: 61 EQEMTDDLDHYTNTYQVYSKDPKKCQEFLGSPEVINWKQHLQIQSSQSSLDDVIKNLAAT 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
KS V+QT+ LYM E K+LA SLL+ KN+S GK K+ Q+ LS+L+P+HA LV
Sbjct: 121 KSGKVKQTQCFLYMASEPGKKLAASLLEAKNVSGDGGKHKSSHQKMLTLSTLDPAHAVLV 180
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N+LW FGGNERS+RFIERCI+ FPS CLLGPEG P++W LMDQTGE+RMAGT EYRAQG
Sbjct: 181 NKLWYFGGNERSRRFIERCIQTFPSTCLLGPEGAPVSWMLMDQTGELRMAGTLPEYRAQG 240
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
L++Y+ Q L KLGFP YSHVD+ N IMQK+ + + +P WNQWN VPL
Sbjct: 241 LISYISCVQVQTLDKLGFPLYSHVDKANHIMQKVCSNMQSIFVPNGWNQWNFVPL 295
>ref|NP_001178259.1| glycine N-acyltransferase-like protein 2 [Bos taurus].
Length = 299
Score = 226 bits (575), Expect = 4e-59
Identities = 120/297 (40%), Positives = 171/297 (57%), Gaps = 3/297 (1%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MF+L+ Q LQ+L SL +S+P SLKVYGT+FH+ NPF L+ LVD WP++ TVVIRPQ
Sbjct: 1 MFVLREPQQLQILYESLEESIPESLKVYGTLFHIRNKNPFNLEVLVDAWPEYQTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
++EM DDLD+YTNTYHI++K EE L P+VINW+ E IQK+AA+
Sbjct: 61 KEEMKDDLDYYTNTYHIFTKAPDKLEEVLACPQVINWEQAFQIQGCQESLGEAIQKVAAS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAID---QEQFQLSSLEPSHA 703
KS V +L++ + E + D+ +L PK ++ +E FQ L+ SHA
Sbjct: 121 KSVQVDYLRTVLFVFEKPTLEASSG--DKMDLMKLLKIPKVLEDKRKETFQNIFLDVSHA 178
Query: 704 ALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYR 883
LVN+ W+ G NE+S +++ERC++NF +L EG PI+W L +Q+ E+RM T +YR
Sbjct: 179 RLVNEHWELGKNEKSLKYVERCLQNFAGFGVLSSEGKPISWFLTEQSCEIRMGYTFPKYR 238
Query: 884 AQGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
QG + + P Y H E + Q+ + + C W+QW C P
Sbjct: 239 GQGHMWQMGCHSIAYFFSKKIPFYIHAAEDKEKTQQTLLSFGFKNVLCGWHQWKCTP 295
>ref|XP_002693817.1| PREDICTED: glycine-N-acyltransferase-like 2-like [Bos taurus].
Length = 299
Score = 226 bits (575), Expect = 4e-59
Identities = 120/297 (40%), Positives = 171/297 (57%), Gaps = 3/297 (1%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MF+L+ Q LQ+L SL +S+P SLKVYGT+FH+ NPF L+ LVD WP++ TVVIRPQ
Sbjct: 1 MFVLREPQQLQILYESLEESIPESLKVYGTLFHIRNKNPFNLEVLVDAWPEYQTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
++EM DDLD+YTNTYHI++K EE L P+VINW+ E IQK+AA+
Sbjct: 61 KEEMKDDLDYYTNTYHIFTKAPDKLEEVLACPQVINWEQAFQIQGCQESLGEAIQKVAAS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAID---QEQFQLSSLEPSHA 703
KS V +L++ + E + D+ +L PK ++ +E FQ L+ SHA
Sbjct: 121 KSVQVDYLRTVLFVFEKPTLEASSG--DKMDLMKLLKIPKVLEDKRKETFQNIFLDVSHA 178
Query: 704 ALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYR 883
LVN+ W+ G NE+S +++ERC++NF +L EG PI+W L +Q+ E+RM T +YR
Sbjct: 179 RLVNEHWELGKNEKSLKYVERCLQNFAGFGVLSSEGKPISWFLTEQSCEIRMGYTFPKYR 238
Query: 884 AQGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
QG + + P Y H E + Q+ + + C W+QW C P
Sbjct: 239 GQGHMWQMGCHSIAYFFSKKIPFYIHAAEDKEKTQQTLLSFGFKNVLCGWHQWKCTP 295
>ref|NP_001138533.1| glycine N-acyltransferase-like protein 3 [Bos taurus].
Length = 287
Score = 151 bits (382), Expect = 1e-36
Identities = 90/294 (30%), Positives = 147/294 (50%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M +L + L +LE L+ P SLKVYG V ++N+GNPF+ + ++D WPDF ++ R Q
Sbjct: 1 MQVLNCSTKLLLLEKMLKSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPDFKAIITRRQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
++ TD+LDHYTN Y ++ KD+ + L VINW +V + +A +
Sbjct: 61 KEAETDNLDHYTNAYAVFYKDVNAYRQLLEEHGVINWDQVFQIQGLQSELYDVSKAVADS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
K +V + + L I + S L ++ QL+ L + L+
Sbjct: 121 KQVDV-KLASFKAACLPPISTVDTSFLMNSSV---------------QLTYLSIADVDLL 164
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
NQ W GGNE+ +R+I I FPSVC+ +G P++WS+ DQ M T E+R +G
Sbjct: 165 NQTWSRGGNEQCRRYIANLISCFPSVCVRDDKGNPMSWSMTDQFATMCHGYTMPEHRRKG 224
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
VI ++ L GFP ++ + N ++ +++ +PC +++ P
Sbjct: 225 YNRLVILMLARKLQSRGFPCQGNILDDNTTSINLTKSIHSDFLPCRFHRLILTP 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,071,640
Number of extensions: 1369188
Number of successful extensions: 4054
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4046
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,207,134
Effective search space: 4603111416
Effective search space used: 4603111416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012835
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012835
(1287 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540581.1| PREDICTED: similar to glycine-N-acyltransferase... 432 e-121
Alignment gi|XP_540580.2| PREDICTED: similar to glycine-N-acyltransferase... 396 e-110
Alignment gi|XP_852587.1| PREDICTED: similar to glycine-N-acyltransferase... 144 2e-34
>ref|XP_540581.1| PREDICTED: similar to glycine-N-acyltransferase isoform a [Canis
familiaris].
Length = 294
Score = 432 bits (1112), Expect = e-121
Identities = 208/293 (70%), Positives = 235/293 (80%)
Frame = +2
Query: 179 LLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQ 358
LLQGAQMLQ LE SLRKSLP SLKVYGTVFHMNQGNPFKLKALVDKWPDF TVVIRPQE+
Sbjct: 2 LLQGAQMLQTLEKSLRKSLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFTTVVIRPQEE 61
Query: 359 EMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKS 538
EM DD DHYTNTY IYSKDLKNC+EFLG PEVINWK NEV+Q LAATKS
Sbjct: 62 EMIDDFDHYTNTYQIYSKDLKNCQEFLGSPEVINWKQHLQIQSSQPSLNEVMQNLAATKS 121
Query: 539 FNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALVNQ 718
F V+QT+ L+ TIK+L PSLLD K L+ GKPK I+QE F+LSSL+ +HA VN+
Sbjct: 122 FQVKQTQCFLFFLANTIKKLVPSLLDVKKLAPGGGKPKPINQEMFKLSSLDVTHATFVNK 181
Query: 719 LWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQGLV 898
W FGGNERSQRFIERCI+ FP+ CLLGPEGTP++WSLMDQTGE+RMAGT EY+ QGLV
Sbjct: 182 FWHFGGNERSQRFIERCIQTFPTFCLLGPEGTPVSWSLMDQTGELRMAGTLPEYQGQGLV 241
Query: 899 TYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
++VI+S Q L KL FP YSH D+ +KIMQKMS+ L+ LRMPC WNQW+C PL
Sbjct: 242 SHVIYSQVQALEKLSFPLYSHTDKSHKIMQKMSYRLHFLRMPCDWNQWHCTPL 294
>ref|XP_540580.2| PREDICTED: similar to glycine-N-acyltransferase (predicted) [Canis
familiaris].
Length = 295
Score = 396 bits (1018), Expect = e-110
Identities = 190/295 (64%), Positives = 225/295 (76%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MF LQG+Q+LQMLE SLRKSLP SLKVYGT+FHMNQGNPFKLKALVDKWPDF TVV RPQ
Sbjct: 1 MFHLQGSQVLQMLEKSLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFTTVVTRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
E+EM DD DHYTNTY IYSK+ +NC+EFLG VINWK NEVIQ LAA
Sbjct: 61 EEEMADDFDHYTNTYQIYSKNPQNCQEFLGASSVINWKQHLQIQSTQSSLNEVIQNLAAA 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
V Q + I+Y E ++L PSLL+ KNL L G+ K I+QE F+LSSL+ +HAALV
Sbjct: 121 NLVKVNQQQGIVYTMPERARKLLPSLLEAKNLPLESGRAKTINQEMFKLSSLDVTHAALV 180
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N+ W FGGNERSQRFIERCI+ FP+ CLLGPEGT ++WSLMDQTGE+RM GT E+RA+G
Sbjct: 181 NKFWYFGGNERSQRFIERCIQTFPTFCLLGPEGTLVSWSLMDQTGEIRMGGTVPEHRARG 240
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
LV+Y++ H + L KL +P+Y H NK +QKMSH+L H+ MPC WNQW+CVPL
Sbjct: 241 LVSYLMDIHIRALDKLDYPTYYHTFTSNKPVQKMSHSLGHICMPCDWNQWHCVPL 295
>ref|XP_852587.1| PREDICTED: similar to glycine-N-acyltransferase (predicted) [Canis
familiaris].
Length = 273
Score = 144 bits (362), Expect = 2e-34
Identities = 85/268 (31%), Positives = 140/268 (52%)
Frame = +2
Query: 251 VYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDLDHYTNTYHIYSKDLKNCE 430
VYG V ++N+GNPF+ + +VD WPDF V+ R Q++ TD+LDHYTN Y ++ KD++ +
Sbjct: 16 VYGAVMNINRGNPFQKEVVVDSWPDFKAVITRRQKEAETDNLDHYTNAYAVFYKDVRAYQ 75
Query: 431 EFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKSFNVQQTENILYMTLETIKELAPSL 610
+ L +VINW +V + +A +K V+ T + + + S
Sbjct: 76 QLLEERDVINWDQVFQIQGLQSELCDVSKAVANSKQLGVKLT------SFKAVHFSPHST 129
Query: 611 LDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSV 790
L + + SL P+ L+ L + A L+N+ W GGNE+ ++I+ I FPSV
Sbjct: 130 LPDTS-SLMSSPPR--------LTYLSVTDADLLNRTWSRGGNEQCLQYIKNLISCFPSV 180
Query: 791 CLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQVLTKLGFPSYSHVDE 970
C+ +G P++WSL DQ M + T EYR +G V + ++ L GFPS +V +
Sbjct: 181 CVRDVKGNPVSWSLTDQFATMCHSYTLPEYRRKGYSRLVALTLARKLQSRGFPSQGNVLD 240
Query: 971 RNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
N + +++ +PC +++ P
Sbjct: 241 DNMASISLLKSVHAEFLPCRFHRLILTP 268
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,193,557
Number of extensions: 1411370
Number of successful extensions: 4092
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4090
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 323
Effective length of database: 15,340,888
Effective search space: 4955106824
Effective search space used: 4955106824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012835
(1287 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122749.1| PREDICTED: glycine N-acyltransferase-like is... 574 e-164
Alignment gi|XP_003122748.1| PREDICTED: glycine N-acyltransferase-like is... 574 e-164
Alignment gi|XP_003122750.2| PREDICTED: glycine N-phenylacetyltransferase... 390 e-109
Alignment gi|XP_003122754.2| PREDICTED: glycine N-acyltransferase-like [S... 302 2e-82
Alignment gi|XP_003122785.2| PREDICTED: glycine N-acyltransferase-like pr... 234 8e-62
Alignment gi|XP_003128486.2| PREDICTED: glycine N-acyltransferase-like pr... 155 5e-38
>ref|XP_003122749.1| PREDICTED: glycine N-acyltransferase-like isoform 2 [Sus scrofa].
Length = 295
Score = 574 bits (1480), Expect = e-164
Identities = 281/295 (95%), Positives = 282/295 (95%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ
Sbjct: 1 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWK NEVIQKLAA
Sbjct: 61 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKQHLQIQSSQSSLNEVIQKLAAA 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV
Sbjct: 121 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 180
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG
Sbjct: 181 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 240
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
LVTYVIFSHSQVLTKLGFPSYSHVD+RNKIMQKMSHTLNHLRMPCSWNQWNCVPL
Sbjct: 241 LVTYVIFSHSQVLTKLGFPSYSHVDKRNKIMQKMSHTLNHLRMPCSWNQWNCVPL 295
>ref|XP_003122748.1| PREDICTED: glycine N-acyltransferase-like isoform 1 [Sus scrofa].
Length = 295
Score = 574 bits (1480), Expect = e-164
Identities = 281/295 (95%), Positives = 282/295 (95%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ
Sbjct: 1 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWK NEVIQKLAA
Sbjct: 61 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKQHLQIQSSQSSLNEVIQKLAAA 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV
Sbjct: 121 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 180
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG
Sbjct: 181 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 240
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
LVTYVIFSHSQVLTKLGFPSYSHVD+RNKIMQKMSHTLNHLRMPCSWNQWNCVPL
Sbjct: 241 LVTYVIFSHSQVLTKLGFPSYSHVDKRNKIMQKMSHTLNHLRMPCSWNQWNCVPL 295
>ref|XP_003122750.2| PREDICTED: glycine N-phenylacetyltransferase-like isoform 1 [Sus
scrofa].
Length = 298
Score = 390 bits (1002), Expect = e-109
Identities = 192/298 (64%), Positives = 223/298 (74%), Gaps = 3/298 (1%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPT---SLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVI 343
M LQ AQML LE S RK LP +LKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVI
Sbjct: 1 MLHLQSAQMLLRLEKSGRKYLPCPEDNLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVI 60
Query: 344 RPQEQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKL 523
RPQEQEMTDD DH+TNTY IYSKDLKNC E L +VINWK +EVIQ L
Sbjct: 61 RPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNL 120
Query: 524 AATKSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHA 703
A TK V+QT+ ILY+T E +L PSL + KNL +PKA +QE FQ+SS++ +HA
Sbjct: 121 ATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKASNQELFQVSSMDVTHA 180
Query: 704 ALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYR 883
ALVN+ W FGGNERSQRFIERCIRNF S+CLLGPEGTPI+WSLMDQTGE+RM T EYR
Sbjct: 181 ALVNKFWHFGGNERSQRFIERCIRNFLSICLLGPEGTPISWSLMDQTGEIRMGATLPEYR 240
Query: 884 AQGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
QGL++ ++ H Q L + GFP+Y H D+ NK +QK++H L+H+ PC WNQWNCVPL
Sbjct: 241 GQGLISNLLCVHIQALDERGFPTYMHTDKANKTVQKINHNLHHIPFPCGWNQWNCVPL 298
>ref|XP_003122754.2| PREDICTED: glycine N-acyltransferase-like [Sus scrofa].
Length = 281
Score = 302 bits (774), Expect = 2e-82
Identities = 145/232 (62%), Positives = 174/232 (75%)
Frame = +2
Query: 359 EMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKS 538
EMTD+LDHYTNTY +YSKD K C+EFLGLPEVINWK ++VI+ LAA K
Sbjct: 50 EMTDELDHYTNTYQVYSKDPKKCQEFLGLPEVINWKQHLQIQSTQSSLDDVIKNLAALKL 109
Query: 539 FNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALVNQ 718
V+QT+ +LYM E K++A SLLD KN S D K K+I Q+ QLSSL+PSHAALVN
Sbjct: 110 GKVKQTQCLLYMVSELGKKMANSLLDAKNPSPNDNKFKSIHQKILQLSSLDPSHAALVNT 169
Query: 719 LWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQGLV 898
W FGGNERSQRFIERCI+ FP+ CLLGPEGTP++W LMDQTGEMRMAGT +YR QGL+
Sbjct: 170 FWYFGGNERSQRFIERCIKTFPNWCLLGPEGTPVSWVLMDQTGEMRMAGTMPKYRRQGLI 229
Query: 899 TYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
TY+ + +Q L KLGFP YSHVD N IMQK++ + ++RMPC WNQWN +P
Sbjct: 230 TYLSYIQTQALNKLGFPMYSHVDRANHIMQKLALNMKNIRMPCDWNQWNFLP 281
>ref|XP_003122785.2| PREDICTED: glycine N-acyltransferase-like protein 2-like [Sus
scrofa].
Length = 321
Score = 234 bits (597), Expect = 8e-62
Identities = 117/297 (39%), Positives = 176/297 (59%), Gaps = 3/297 (1%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MF+L+ LQ L +L KSLP S KVYG ++++ NPF L+ LVD WPD+ T++ RPQ
Sbjct: 22 MFVLREPLKLQSLYETLEKSLPESTKVYGAIYNIKNKNPFNLEVLVDAWPDYQTIITRPQ 81
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
++EM DDLD+YTNTYHI++K + EE L P+VINW+ E I+K++A+
Sbjct: 82 KEEMKDDLDYYTNTYHIFTKAPEKLEEVLACPQVINWEQAFQIQGCQESVGEAIRKISAS 141
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAID---QEQFQLSSLEPSHA 703
KS V +L+M++ K+L ++ D+ +L K + +E F+ L+ S+A
Sbjct: 142 KSVQVDYKRTMLFMSVNE-KKLKKTIDDKIDLMKVPKMSKEDEDGKKENFRTIFLDASYA 200
Query: 704 ALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYR 883
LVN+ W FG NERS +++ERC++NFP + GPE P++W +M+Q+ E+RM T +YR
Sbjct: 201 GLVNEHWDFGKNERSLKYVERCLQNFPGFGVWGPEECPVSWVVMEQSCELRMGYTVPKYR 260
Query: 884 AQGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
QG + + + L P Y HV E + +QK+ T+ C W+QW C P
Sbjct: 261 GQGNMWQIAYHFISYLISKNMPFYLHVAEEKEEIQKLMRTVGCKESLCGWHQWICTP 317
>ref|XP_003128486.2| PREDICTED: glycine N-acyltransferase-like protein 3-like [Sus
scrofa].
Length = 288
Score = 155 bits (392), Expect = 5e-38
Identities = 91/285 (31%), Positives = 145/285 (50%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M +L + L LE LR P SLKVYG V ++N+GNPF+ + ++D WP+F V+ R Q
Sbjct: 1 MLVLNCSTKLLTLEKVLRSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPNFKAVITRRQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
++ TD+LDHYTN Y ++ KD++ ++ L VINW +V + +A +
Sbjct: 61 KEAETDNLDHYTNAYAVFYKDVRAYQQLLEEQGVINWDQVFQIQGLQSELYDVSKTVATS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
K +V+ + +L+P L +SL+ +LS L + A L+
Sbjct: 121 KQLDVK----LASFKAAFFPQLSPPLDTSSLMSLS-----------LKLSCLSVADADLL 165
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
NQ W GGNE+ +R+I + I FPSVC+ +G P++WS DQ M T E+R +G
Sbjct: 166 NQTWSRGGNEQCRRYIAKLISCFPSVCVRDDKGNPVSWSFTDQFATMCHGYTLTEHRRKG 225
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPC 1027
V + + L G P + + N+ ++ +L+ +PC
Sbjct: 226 YNRLVALTLVRKLQSQGLPCQGNFWDDNEASIRLLKSLHAELLPC 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,238,717
Number of extensions: 880656
Number of successful extensions: 2575
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2573
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 327
Effective length of database: 8,804,438
Effective search space: 2879051226
Effective search space used: 2879051226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012835
(1287 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666047.1| glycine N-acyltransferase [Mus musculus]. 420 e-117
Alignment gi|NP_001161379.1| glycine N-acyltransferase-like protein [Mus ... 400 e-111
Alignment gi|NP_001013784.2| glycine N-acyltransferase-like protein [Mus ... 400 e-111
Alignment gi|NP_083826.1| glycine N-acyltransferase-like protein Keg1 [Mu... 377 e-105
Alignment gi|NP_001138532.1| glycine N-acyltransferase-like protein 3 [Mu... 145 5e-35
>ref|NP_666047.1| glycine N-acyltransferase [Mus musculus].
Length = 296
Score = 420 bits (1080), Expect = e-117
Identities = 199/292 (68%), Positives = 234/292 (80%)
Frame = +2
Query: 182 LQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQE 361
LQGAQMLQMLE SLRK LP SLKVYGTV+HM GNPF LKALVDKWPDFNTVV+RPQEQE
Sbjct: 5 LQGAQMLQMLEKSLRKYLPESLKVYGTVYHMIHGNPFNLKALVDKWPDFNTVVVRPQEQE 64
Query: 362 MTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKSF 541
MTDDLD Y NTY +YSKD +NC+EFL EVINWK N+ IQ LA+ +SF
Sbjct: 65 MTDDLDFYINTYQVYSKDPQNCQEFLESSEVINWKQHLQIQSSQSHLNKTIQNLASIQSF 124
Query: 542 NVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALVNQL 721
++ +ENILY++ ETIK+L PSLLD KNLS GKPKAIDQ++F+LSSL+ HAALVN+
Sbjct: 125 QIKHSENILYVSSETIKKLFPSLLDTKNLSTGSGKPKAIDQDKFKLSSLDVVHAALVNKF 184
Query: 722 WQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQGLVT 901
W FGGNERSQRFIERCI+NFPS C+LGPEGTP +W+LMDQTGEMRM GT EYR QGLV+
Sbjct: 185 WLFGGNERSQRFIERCIKNFPSSCVLGPEGTPASWTLMDQTGEMRMGGTMPEYRLQGLVS 244
Query: 902 YVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
+V+ S Q++TK G+P YSH ++ N MQKMS+TL HL MPC+WNQW C+P+
Sbjct: 245 FVVHSQDQIMTKRGYPVYSHTEKSNIAMQKMSYTLQHLPMPCAWNQWKCMPM 296
>ref|NP_001161379.1| glycine N-acyltransferase-like protein [Mus musculus].
Length = 296
Score = 400 bits (1028), Expect = e-111
Identities = 190/296 (64%), Positives = 234/296 (79%), Gaps = 1/296 (0%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M L+ +QMLQMLE+SLRK LP SLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVV+RP+
Sbjct: 1 MLHLRSSQMLQMLESSLRKYLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVVRPR 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQEM DDLD +TNTY IYSKD K+C EFLG P+VINWK NE I LAA
Sbjct: 61 EQEMGDDLDQHTNTYQIYSKDPKHCLEFLGTPDVINWKQHLQIQSSQSNLNEAIMDLAAG 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKN-LSLTDGKPKAIDQEQFQLSSLEPSHAAL 709
K V++T+ ILYM ET K+L PSLL++K L G+P+AIDQE F+LS+L+ +HA L
Sbjct: 121 KMVKVKRTQCILYMMPETAKKLVPSLLEDKEYLDHQSGRPRAIDQEMFKLSTLDVTHAPL 180
Query: 710 VNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQ 889
V++ WQFGGNERSQRFI RCI+ FPS CLLGPEGTP++W+LMDQTGE+RMAGT +YRAQ
Sbjct: 181 VDKFWQFGGNERSQRFIGRCIQIFPSSCLLGPEGTPVSWALMDQTGEIRMAGTVPDYRAQ 240
Query: 890 GLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
GL++++I++ + + K G+P Y+H ++ NK++QKMSHTL+H+ MPC WNQW C PL
Sbjct: 241 GLISHIIYAQTLAMDKRGYPVYNHTEQTNKVIQKMSHTLHHVPMPCDWNQWYCAPL 296
>ref|NP_001013784.2| glycine N-acyltransferase-like protein [Mus musculus].
Length = 296
Score = 400 bits (1028), Expect = e-111
Identities = 190/296 (64%), Positives = 234/296 (79%), Gaps = 1/296 (0%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M L+ +QMLQMLE+SLRK LP SLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVV+RP+
Sbjct: 1 MLHLRSSQMLQMLESSLRKYLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVVRPR 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQEM DDLD +TNTY IYSKD K+C EFLG P+VINWK NE I LAA
Sbjct: 61 EQEMGDDLDQHTNTYQIYSKDPKHCLEFLGTPDVINWKQHLQIQSSQSNLNEAIMDLAAG 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKN-LSLTDGKPKAIDQEQFQLSSLEPSHAAL 709
K V++T+ ILYM ET K+L PSLL++K L G+P+AIDQE F+LS+L+ +HA L
Sbjct: 121 KMVKVKRTQCILYMMPETAKKLVPSLLEDKEYLDHQSGRPRAIDQEMFKLSTLDVTHAPL 180
Query: 710 VNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQ 889
V++ WQFGGNERSQRFI RCI+ FPS CLLGPEGTP++W+LMDQTGE+RMAGT +YRAQ
Sbjct: 181 VDKFWQFGGNERSQRFIGRCIQIFPSSCLLGPEGTPVSWALMDQTGEIRMAGTVPDYRAQ 240
Query: 890 GLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
GL++++I++ + + K G+P Y+H ++ NK++QKMSHTL+H+ MPC WNQW C PL
Sbjct: 241 GLISHIIYAQTLAMDKRGYPVYNHTEQTNKVIQKMSHTLHHVPMPCDWNQWYCAPL 296
>ref|NP_083826.1| glycine N-acyltransferase-like protein Keg1 [Mus musculus].
Length = 295
Score = 377 bits (969), Expect = e-105
Identities = 178/295 (60%), Positives = 219/295 (74%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
MF LQ +Q LQ+LENSLRK LP SLKVYGTVFH+NQGNPFKLK LVDKWPDFNTVVIRPQ
Sbjct: 1 MFCLQSSQALQVLENSLRKHLPESLKVYGTVFHINQGNPFKLKTLVDKWPDFNTVVIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
E++MTDDLDHY NTY +YSKD K+C+EFLG EVINWK +VI+ L AT
Sbjct: 61 EEDMTDDLDHYNNTYLVYSKDPKHCQEFLGSSEVINWKQHLQIQSSQSDLGKVIESLGAT 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
V+ + LYM +T K+LAPSL+D KNL ++ K +DQ+ F+ +SL+ +HAALV
Sbjct: 121 NLGKVKHKQCFLYMVCQTAKKLAPSLMDAKNLVVSRNKLTPLDQQLFKFASLDVTHAALV 180
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N LW FGGNE+SQ+FIERCI FPS C++GPEGTP++W+LMD TGE+RM GT +YR Q
Sbjct: 181 NSLWHFGGNEKSQKFIERCIFTFPSFCIMGPEGTPVSWTLMDHTGELRMGGTLPKYRRQS 240
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
L+ +V Q L KLGFP Y+HVD+ N +Q+M L + +PC+WNQWNCVPL
Sbjct: 241 LIYHVASQQIQTLEKLGFPMYAHVDKANFTVQRMVGLLGQILLPCTWNQWNCVPL 295
>ref|NP_001138532.1| glycine N-acyltransferase-like protein 3 [Mus musculus].
Length = 290
Score = 145 bits (367), Expect = 5e-35
Identities = 88/306 (28%), Positives = 153/306 (50%), Gaps = 12/306 (3%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M +L+ + L +LEN L+ P SLKVYG V ++N+GNPF+ + ++D WP+F ++ R +
Sbjct: 1 MLVLKCSTKLFILENMLKSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPNFKVIITRRE 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
+ TD+LDHYTN Y ++ KD++ ++ L +VINW
Sbjct: 61 REAETDNLDHYTNAYAVFYKDIRAYQQLLEEHDVINW----------------------D 98
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKP------KAIDQEQF------Q 676
+ F +Q ++ LY K +A + L + +++L K ++ F +
Sbjct: 99 QVFQIQGLQSELY---AASKAVAKARLLDLDINLASFKAVHFSPVSSVPDHSFLTGPTPR 155
Query: 677 LSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMR 856
L+ L S A L+N+ W GGN++ R++ I FPSVC+ +G P++W + DQ M
Sbjct: 156 LTYLSVSDADLLNRTWSRGGNQQCLRYLANLIACFPSVCVRDEKGNPVSWGITDQFATMC 215
Query: 857 MAGTKLEYRAQGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWN 1036
T ++R +G V + ++ L GFPS +V + N + ++ +PC ++
Sbjct: 216 HGYTLPDHRRKGYSRLVALTLARKLQSRGFPSQGNVLDDNLASINLLKSVQAEFLPCRFH 275
Query: 1037 QWNCVP 1054
+ P
Sbjct: 276 RLILTP 281
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,605,781
Number of extensions: 1174266
Number of successful extensions: 3532
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3527
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 325
Effective length of database: 12,493,815
Effective search space: 4060489875
Effective search space used: 4060489875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012835
(1287 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_964011.2| glycine N-acyltransferase isoform a [Homo sapie... 436 e-122
Alignment gi|NP_005829.3| glycine N-acyltransferase isoform b [Homo sapie... 228 7e-60
Alignment gi|NP_659453.3| glycine N-acyltransferase-like protein 2 [Homo ... 224 2e-58
Alignment gi|NP_001207425.1| glycine N-acyltransferase-like protein 1 iso... 215 6e-56
Alignment gi|NP_001207423.1| glycine N-acyltransferase-like protein 1 iso... 215 6e-56
Alignment gi|NP_542392.2| glycine N-acyltransferase-like protein 1 isofor... 199 4e-51
Alignment gi|NP_001010904.1| glycine N-acyltransferase-like protein 3 [Ho... 155 1e-37
>ref|NP_964011.2| glycine N-acyltransferase isoform a [Homo sapiens].
Length = 296
Score = 436 bits (1120), Expect = e-122
Identities = 211/295 (71%), Positives = 235/295 (79%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M LQGAQMLQMLE SLRKSLP SLKVYGTVFH+N GNPF LKA+VDKWPDFNTVV+ PQ
Sbjct: 2 MLPLQGAQMLQMLEKSLRKSLPASLKVYGTVFHINHGNPFNLKAVVDKWPDFNTVVVCPQ 61
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQ+MTDDLDHYTNTY IYSKD +NC+EFLG PE+INWK NE IQ LAA
Sbjct: 62 EQDMTDDLDHYTNTYQIYSKDPQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAI 121
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
KSF V+QT+ ILYM ET KEL P LL K LS GKPKAI+QE F+LSS++ +HA LV
Sbjct: 122 KSFKVKQTQRILYMAAETAKELTPFLLKSKILSPNGGKPKAINQEMFKLSSMDVTHAHLV 181
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N+ W FGGNERSQRFIERCI+ FP+ CLLGPEGTP+ W LMDQTGEMRMAGT EYR G
Sbjct: 182 NKFWHFGGNERSQRFIERCIQTFPTCCLLGPEGTPVCWDLMDQTGEMRMAGTLPEYRLHG 241
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1057
LVTYVI+SH+Q L KLGFP YSHVD N+ MQKMS+TL H+ +P SWNQWNCVPL
Sbjct: 242 LVTYVIYSHAQKLGKLGFPVYSHVDYSNEAMQKMSYTLQHVPIPRSWNQWNCVPL 296
>ref|NP_005829.3| glycine N-acyltransferase isoform b [Homo sapiens].
Length = 163
Score = 228 bits (582), Expect = 7e-60
Identities = 114/162 (70%), Positives = 124/162 (76%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M LQGAQMLQMLE SLRKSLP SLKVYGTVFH+N GNPF LKA+VDKWPDFNTVV+ PQ
Sbjct: 2 MLPLQGAQMLQMLEKSLRKSLPASLKVYGTVFHINHGNPFNLKAVVDKWPDFNTVVVCPQ 61
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
EQ+MTDDLDHYTNTY IYSKD +NC+EFLG PE+INWK NE IQ LAA
Sbjct: 62 EQDMTDDLDHYTNTYQIYSKDPQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAI 121
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAI 658
KSF V+QT+ ILYM ET KEL P LL K LS GKPKA+
Sbjct: 122 KSFKVKQTQRILYMAAETAKELTPFLLKSKILSPNGGKPKAM 163
>ref|NP_659453.3| glycine N-acyltransferase-like protein 2 [Homo sapiens].
Length = 294
Score = 224 bits (570), Expect = 2e-58
Identities = 117/294 (39%), Positives = 170/294 (57%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M +L +Q LQ+L SL KS+P S+KVYG +F++ NPF ++ LVD WPD+ V+ RPQ
Sbjct: 1 MLVLHNSQKLQILYKSLEKSIPESIKVYGAIFNIKDKNPFNMEVLVDAWPDYQIVITRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
+QEM DD DHYTNTYHI++K EE L VI+W+ +E I+K+A +
Sbjct: 61 KQEMKDDQDHYTNTYHIFTKAPDKLEEVLSYSNVISWEQTLQIQGCQEGLDEAIRKVATS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
KS V + IL++ E K+ S D+ L D K + F L+ SHA LV
Sbjct: 121 KSVQVDYMKTILFIP-ELPKKHKTSSNDKMELFEVDDDNK---EGNFSNMFLDASHAGLV 176
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N+ W FG NERS ++IERC+++F +LGPEG ++W +M+Q+ E+RM T +YR QG
Sbjct: 177 NEHWAFGKNERSLKYIERCLQDFLGFGVLGPEGQLVSWIVMEQSCELRMGYTVPKYRHQG 236
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
+ + + + L++ P Y HV + N+ + + L PC W+QW C P
Sbjct: 237 NMLQIGYHLEKYLSQKEIPFYFHVADNNEKSLQALNNLGFKICPCGWHQWKCTP 290
>ref|NP_001207425.1| glycine N-acyltransferase-like protein 1 isoform 2 [Homo sapiens].
Length = 302
Score = 215 bits (548), Expect = 6e-56
Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 2/296 (0%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M LL + L L SL +S+P SLKVYG+V+H+N GNPF ++ LVD WP++ V+IRPQ
Sbjct: 1 MILLNNSHKLLALYKSLARSIPESLKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
+QEMTDD+D YTN Y ++SK+ + EE L E++NWK E I+ +
Sbjct: 61 KQEMTDDMDSYTNVYRMFSKEPQKSEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQE--QFQLSSLEPSHAA 706
KS V+ + +L +T + +K A S + + T + E F+ + L+ S++
Sbjct: 121 KSVKVEHSRALLLVTEDILKLNASSKSKLGSWAETGHPDDEFESETPNFKYAQLDVSYSG 180
Query: 707 LVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRA 886
LVN W+ G NERS +I+RCI + P+ C+LGPEG P++W MD + E+ MA + +YR
Sbjct: 181 LVNDNWKRGKNERSLHYIKRCIEDLPAACMLGPEGVPVSWVTMDPSCEVGMAYSMEKYRR 240
Query: 887 QGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
G + V+ + + L + P Y V E N+ ++ C W+QW C P
Sbjct: 241 TGNMARVMVRYMKYLRQKNIPFYISVLEENEDSRRFVGQFGFFEASCEWHQWTCYP 296
>ref|NP_001207423.1| glycine N-acyltransferase-like protein 1 isoform 2 [Homo sapiens].
Length = 302
Score = 215 bits (548), Expect = 6e-56
Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 2/296 (0%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M LL + L L SL +S+P SLKVYG+V+H+N GNPF ++ LVD WP++ V+IRPQ
Sbjct: 1 MILLNNSHKLLALYKSLARSIPESLKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
+QEMTDD+D YTN Y ++SK+ + EE L E++NWK E I+ +
Sbjct: 61 KQEMTDDMDSYTNVYRMFSKEPQKSEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQE--QFQLSSLEPSHAA 706
KS V+ + +L +T + +K A S + + T + E F+ + L+ S++
Sbjct: 121 KSVKVEHSRALLLVTEDILKLNASSKSKLGSWAETGHPDDEFESETPNFKYAQLDVSYSG 180
Query: 707 LVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRA 886
LVN W+ G NERS +I+RCI + P+ C+LGPEG P++W MD + E+ MA + +YR
Sbjct: 181 LVNDNWKRGKNERSLHYIKRCIEDLPAACMLGPEGVPVSWVTMDPSCEVGMAYSMEKYRR 240
Query: 887 QGLVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
G + V+ + + L + P Y V E N+ ++ C W+QW C P
Sbjct: 241 TGNMARVMVRYMKYLRQKNIPFYISVLEENEDSRRFVGQFGFFEASCEWHQWTCYP 296
>ref|NP_542392.2| glycine N-acyltransferase-like protein 1 isoform 1 [Homo sapiens].
Length = 333
Score = 199 bits (507), Expect = 4e-51
Identities = 100/272 (36%), Positives = 153/272 (56%), Gaps = 2/272 (0%)
Frame = +2
Query: 245 LKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDLDHYTNTYHIYSKDLKN 424
LKVYG+V+H+N GNPF ++ LVD WP++ V+IRPQ+QEMTDD+D YTN Y ++SK+ +
Sbjct: 56 LKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQKQEMTDDMDSYTNVYRMFSKEPQK 115
Query: 425 CEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKSFNVQQTENILYMTLETIKELAP 604
EE L E++NWK E I+ +KS V+ + +L +T + +K A
Sbjct: 116 SEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFSKSVKVEHSRALLLVTEDILKLNAS 175
Query: 605 SLLDEKNLSLTDGKPKAIDQE--QFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRN 778
S + + T + E F+ + L+ S++ LVN W+ G NERS +I+RCI +
Sbjct: 176 SKSKLGSWAETGHPDDEFESETPNFKYAQLDVSYSGLVNDNWKRGKNERSLHYIKRCIED 235
Query: 779 FPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQVLTKLGFPSYS 958
P+ C+LGPEG P++W MD + E+ MA + +YR G + V+ + + L + P Y
Sbjct: 236 LPAACMLGPEGVPVSWVTMDPSCEVGMAYSMEKYRRTGNMARVMVRYMKYLRQKNIPFYI 295
Query: 959 HVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
V E N+ ++ C W+QW C P
Sbjct: 296 SVLEENEDSRRFVGQFGFFEASCEWHQWTCYP 327
>ref|NP_001010904.1| glycine N-acyltransferase-like protein 3 [Homo sapiens].
Length = 288
Score = 155 bits (391), Expect = 1e-37
Identities = 92/294 (31%), Positives = 150/294 (51%)
Frame = +2
Query: 173 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 352
M +L + L +LE L+ P SLKVYG V ++N+GNPF+ + ++D WPDF V+ R Q
Sbjct: 1 MLVLNCSTKLLILEKMLKSCFPESLKVYGAVMNINRGNPFQKEVVLDSWPDFKAVITRRQ 60
Query: 353 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 532
+ TD+LDHYTN Y ++ KD++ + L +V NW +V + +A +
Sbjct: 61 REAETDNLDHYTNAYAVFYKDVRAYRQLLEECDVFNWDQVFQIQGLQSELYDVSKAVANS 120
Query: 533 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSLEPSHAALV 712
K N++ T + + + S L + + L P+ L+ L ++A L+
Sbjct: 121 KQLNIKLT------SFKAVHFSPVSSLPDTSF-LKGPSPR--------LTYLSVANADLL 165
Query: 713 NQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAGTKLEYRAQG 892
N+ W GGNE+ R+I I FPSVC+ +G P++WS+ DQ M T E+R +G
Sbjct: 166 NRTWSRGGNEQCLRYIANLISCFPSVCVRDEKGNPVSWSITDQFATMCHGYTLPEHRRKG 225
Query: 893 LVTYVIFSHSQVLTKLGFPSYSHVDERNKIMQKMSHTLNHLRMPCSWNQWNCVP 1054
V + ++ L GFPS +V + N + +L+ +PC +++ P
Sbjct: 226 YSRLVALTLARKLQSRGFPSQGNVLDDNTASISLLKSLHAEFLPCRFHRLILTP 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,358,254
Number of extensions: 1393053
Number of successful extensions: 4157
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4147
Number of HSP's successfully gapped: 7
Length of query: 429
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,835,944
Effective search space: 4806845856
Effective search space used: 4806845856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012835
(1287 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1201 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1201 bits (606), Expect = 0.0
Identities = 624/630 (99%)
Strand = Plus / Minus
Query: 658 tgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997433 tgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatca 11997374
Query: 718 attatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997373 attatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaa 11997314
Query: 778 cttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgga 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997313 cttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgga 11997254
Query: 838 ccagacaggagagatgcggatggcaggcaccaaacttgagtaccgggcccagggcctcgt 897
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11997253 ccagacaggagagatgcggatggcaggcaccaagcttgagtaccgggcccagggcctcgt 11997194
Query: 898 cacctacgtcatcttttcccattcccaggttctgaccaaactcggtttcccctcctattc 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997193 cacctacgtcatcttttcccattcccaggttctgaccaaactcggtttcccctcctattc 11997134
Query: 958 tcacgtagacgagagaaacaaaattatgcagaagatgagtcacactctgaatcaccttcg 1017
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997133 tcacgtagacaagagaaacaaaattatgcagaagatgagtcacactctgaatcaccttcg 11997074
Query: 1018 catgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaacccag 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997073 catgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaacccaa 11997014
Query: 1078 gacagtggggatgggcctgaggctgtgggtagacagagggggagcctaaactgtcattgt 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997013 gacagtggggatgggcctgaggctgtgggtagacagagggggagcctaaactgtcattgt 11996954
Query: 1138 aatcatcaataaagtagtggatgctgtccgtataaaaggtatagcaatatgcctatccgg 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11996953 aatcatcaataaagtagtggatgctgtccgtataaaaggtatagcaatatgcctatccgg 11996894
Query: 1198 gacctggtcatttagaaacaatgaaaccacccttttagaaacgaataaaactggacttcc 1257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11996893 gacctggtcatttagaaacaatgaaaccacccttttagaaacgaatgaaactggacttcc 11996834
Query: 1258 tgttgtggctcattaggttcagagcccaaa 1287
|||||||||||| |||||||||| ||||||
Sbjct: 11996833 tgttgtggctcagtaggttcagaacccaaa 11996804
Score = 1193 bits (602), Expect = 0.0
Identities = 623/630 (98%)
Strand = Plus / Plus
Query: 658 tgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993062 tgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatca 11993121
Query: 718 attatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993122 attatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaa 11993181
Query: 778 cttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgga 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993182 cttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgga 11993241
Query: 838 ccagacaggagagatgcggatggcaggcaccaaacttgagtaccgggcccagggcctcgt 897
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11993242 ccagacaggagagatgcggatggcaggcaccaagcttgagtaccgggcccagggcctcgt 11993301
Query: 898 cacctacgtcatcttttcccattcccaggttctgaccaaactcggtttcccctcctattc 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993302 cacctacgtcatcttttcccattcccaggttctgaccaaactcggtttcccctcctattc 11993361
Query: 958 tcacgtagacgagagaaacaaaattatgcagaagatgagtcacactctgaatcaccttcg 1017
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993362 tcacgtagacaagagaaacaaaattatgcagaagatgagtcacactctgaatcaccttcg 11993421
Query: 1018 catgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaacccag 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993422 catgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaacccaa 11993481
Query: 1078 gacagtggggatgggcctgaggctgtgggtagacagagggggagcctaaactgtcattgt 1137
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11993482 gacagtggggatgggcctgaggctgtgcgtagacagagggggagcctaaactgtcattgt 11993541
Query: 1138 aatcatcaataaagtagtggatgctgtccgtataaaaggtatagcaatatgcctatccgg 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993542 aatcatcaataaagtagtggatgctgtccgtataaaaggtatagcaatatgcctatccgg 11993601
Query: 1198 gacctggtcatttagaaacaatgaaaccacccttttagaaacgaataaaactggacttcc 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11993602 gacctggtcatttagaaacaatgaaaccacccttttagaaacgaataaaactggagttcc 11993661
Query: 1258 tgttgtggctcattaggttcagagcccaaa 1287
|||||||||||| |||||||||| ||||||
Sbjct: 11993662 tgttgtggctcagtaggttcagaacccaaa 11993691
Score = 607 bits (306), Expect = e-171
Identities = 330/338 (97%)
Strand = Plus / Minus
Query: 950 tcctattctcacgtagacgagagaaacaaaattatgcagaagatgagtcacactctgaat 1009
|||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11996385 tcctattctctcgtagacaagagagacaaaattatgcagaagatgagtcacactctgaat 11996326
Query: 1010 caccttcgcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccct 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11996325 caccttcgcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccct 11996266
Query: 1070 gaacccaggacagtggggatgggcctgaggctgtgggtagacagagggggagcctaaact 1129
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11996265 gaacccaagacagtggggatgggcctgaggctgtgcgtagacagagggggagcctaaact 11996206
Query: 1130 gtcattgtaatcatcaataaagtagtggatgctgtccgtataaaaggtatagcaatatgc 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11996205 gtcattgtaatcatcaataaagtagtggatgctgtccgtataaaaggtatagcaatatgc 11996146
Query: 1190 ctatccgggacctggtcatttagaaacaatgaaaccacccttttagaaacgaataaaact 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11996145 ctatccgggacctggtcatttagaaacaatgaaaccacccttttagaaacgaataaaact 11996086
Query: 1250 ggacttcctgttgtggctcattaggttcagagcccaaa 1287
||| |||||||||||||||| |||||||||| ||||||
Sbjct: 11996085 ggagttcctgttgtggctcagtaggttcagaacccaaa 11996048
Score = 333 bits (168), Expect = 1e-88
Identities = 171/172 (99%)
Strand = Plus / Plus
Query: 486 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccactaaatccttcaacg 545
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11992474 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccgctaaatccttcaacg 11992533
Query: 546 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11992534 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 11992593
Query: 606 ccctgctggatgaaaagaacttgtcccttaccgatggtaaacccaaggccat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11992594 ccctgctggatgaaaagaacttgtcccttaccgatggtaaacccaaggccat 11992645
Score = 333 bits (168), Expect = 1e-88
Identities = 171/172 (99%)
Strand = Plus / Minus
Query: 486 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccactaaatccttcaacg 545
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11998021 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccgctaaatccttcaacg 11997962
Query: 546 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997961 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 11997902
Query: 606 ccctgctggatgaaaagaacttgtcccttaccgatggtaaacccaaggccat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997901 ccctgctggatgaaaagaacttgtcccttaccgatggtaaacccaaggccat 11997850
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1 cattgcaaacctcagcttggcatgaagaaaacagagctcagtgcactctgccagaccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12081587 cattgcaaacctcagcttggcatgaagaaaacagagctcagtgcactctgccagaccctg 12081646
Query: 61 ctgaacagactgcaccagagggaaatttccgactcgagaggttgctcctcatcatttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12081647 ctgaacagactgcaccagagggaaatttccgactcgagaggttgctcctcatcatttgtt 12081706
Query: 121 cccgccaagctttggtgtgaagactgctttc 151
|||||||||||||||||||||||||||||||
Sbjct: 12081707 cccgccaagctttggtgtgaagactgctttc 12081737
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 356 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11990910 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 11990969
Query: 416 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11990970 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 11991029
Query: 476 cagatccaaagt 487
||||||||||||
Sbjct: 11991030 cagatccaaagt 11991041
Score = 254 bits (128), Expect = 1e-64
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 356 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11999649 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 11999590
Query: 416 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 475
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11999589 ctgaagaactgtgaggaattccttggcttaccataagtcatcaactggaaacagcatttg 11999530
Query: 476 cagatccaaagt 487
||||||||||||
Sbjct: 11999529 cagatccaaagt 11999518
Score = 212 bits (107), Expect = 4e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 249 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11988012 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 11988071
Query: 309 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 359
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11988072 tggacaagtggcctgattttaacacagtggttattcgccctcaggagcagg 11988122
Score = 212 bits (107), Expect = 4e-52
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 249 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12002553 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 12002494
Query: 309 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 359
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12002493 tggacaagtggcctgattttaacacagtggttattcgccctcaggagcagg 12002443
Score = 196 bits (99), Expect = 2e-47
Identities = 108/111 (97%)
Strand = Plus / Plus
Query: 249 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 308
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12021030 aggtttatggcaccgtcttccacatgaaccaaggaaaccccttcaagctaaaggccttgg 12021089
Query: 309 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 359
|||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 12021090 tggacaagtggcctgattttaatacagtggttattcgccctcaggagcagg 12021140
Score = 196 bits (99), Expect = 2e-47
Identities = 108/111 (97%)
Strand = Plus / Plus
Query: 249 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 308
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12064723 aggtttatggcaccgtcttccacatgaaccaaggaaaccccttcaagctaaaggccttgg 12064782
Query: 309 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 359
|||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 12064783 tggacaagtggcctgattttaatacagtggttattcgccctcaggagcagg 12064833
Score = 184 bits (93), Expect = 8e-44
Identities = 174/201 (86%)
Strand = Plus / Plus
Query: 660 accaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatcaat 719
|||||||| ||||||| |||||||| |||| | |||||||||||||||||||| | |
Sbjct: 12070049 accaagagttgtttcaagtctcatccatggatgttacccacgctgccttggtgaataagt 12070108
Query: 720 tatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaact 779
| ||||| || |||||||| |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 12070109 tctggcattttggtggcaacgagaggagccagagattcattgagcgatgtatccgcaact 12070168
Query: 780 tcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatggacc 839
| | |||| ||||| |||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct: 12070169 ttctctccatctgcttgctggggcctgagggcacccctatatcttggtccctgatggacc 12070228
Query: 840 agacaggagagatgcggatgg 860
||||||||||||| |||||||
Sbjct: 12070229 agacaggagagatacggatgg 12070249
Score = 182 bits (92), Expect = 3e-43
Identities = 98/100 (98%)
Strand = Plus / Plus
Query: 153 aggctaagacatctcccacgatgttcctattgcaaggtgcccagatgctgcagatgctgg 212
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11982288 aggctaaggcatctcccacgatgttcctgttgcaaggtgcccagatgctgcagatgctgg 11982347
Query: 213 agaattccttgaggaagagccttcctacatccttgaaggt 252
||||||||||||||||||||||||||||||||||||||||
Sbjct: 11982348 agaattccttgaggaagagccttcctacatccttgaaggt 11982387
Score = 182 bits (92), Expect = 3e-43
Identities = 98/100 (98%)
Strand = Plus / Minus
Query: 153 aggctaagacatctcccacgatgttcctattgcaaggtgcccagatgctgcagatgctgg 212
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 12008298 aggctaaggcatctcccacgatgttcctgttgcaaggtgcccagatgctgcagatgctgg 12008239
Query: 213 agaattccttgaggaagagccttcctacatccttgaaggt 252
||||||||||||||||||||||||||||||||||||||||
Sbjct: 12008238 agaattccttgaggaagagccttcctacatccttgaaggt 12008199
Score = 182 bits (92), Expect = 3e-43
Identities = 170/196 (86%)
Strand = Plus / Plus
Query: 674 caactctcatccctggaaccttcccacgctgccttggtgaatcaattatggcaattcggt 733
||||| ||||||||||| |||||||||||||| ||||||||| ||| ||| | || |||
Sbjct: 12030196 caactgtcatccctggatccttcccacgctgctttggtgaatacattctggtattttggt 12030255
Query: 734 ggcaatgagaggagccagagattcatcgagcgctgcatccggaacttcccctccgtctgc 793
||||||||||||||||||||||||||||||||||| ||| || ||||||| | |||
Sbjct: 12030256 ggcaatgagaggagccagagattcatcgagcgctgtatcaagaccttccccaactggtgc 12030315
Query: 794 ctgctagggcctgaggggaccccgatagcttggtccctgatggaccagacaggagagatg 853
||||| ||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct: 12030316 ctgctggggcctgaggggacccccgtgtcctgggtcctgatggaccagacaggagagatg 12030375
Query: 854 cggatggcaggcacca 869
||||||||||||||||
Sbjct: 12030376 cggatggcaggcacca 12030391
Score = 182 bits (92), Expect = 3e-43
Identities = 170/196 (86%)
Strand = Plus / Plus
Query: 674 caactctcatccctggaaccttcccacgctgccttggtgaatcaattatggcaattcggt 733
||||| ||||||||||| |||||||||||||| ||||||||| ||| ||| | || |||
Sbjct: 12219355 caactgtcatccctggatccttcccacgctgctttggtgaatacattctggtattttggt 12219414
Query: 734 ggcaatgagaggagccagagattcatcgagcgctgcatccggaacttcccctccgtctgc 793
||||||||||||||||||||||||||||||||||| ||| || ||||||| | |||
Sbjct: 12219415 ggcaatgagaggagccagagattcatcgagcgctgtatcaagaccttccccaactggtgc 12219474
Query: 794 ctgctagggcctgaggggaccccgatagcttggtccctgatggaccagacaggagagatg 853
||||| ||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct: 12219475 ctgctggggcctgaggggacccccgtgtcctgggtcctgatggaccagacaggagagatg 12219534
Query: 854 cggatggcaggcacca 869
||||||||||||||||
Sbjct: 12219535 cggatggcaggcacca 12219550
Score = 170 bits (86), Expect = 1e-39
Identities = 164/190 (86%)
Strand = Plus / Plus
Query: 660 accaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatcaat 719
|||||||| ||||||| |||||||| |||| | |||||||||||||||||||| | |
Sbjct: 11970518 accaagagatgtttcaagtctcatccatggatgttacccacgctgccttggtgaataagt 11970577
Query: 720 tatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaact 779
| ||||| || |||||||| |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 11970578 tctggcattttggtggcaacgagaggagccagagattcattgagcgatgtatccgcaact 11970637
Query: 780 tcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatggacc 839
| | |||| ||||| |||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct: 11970638 ttctctccatctgcttgctggggcctgagggcacccctatatcttggtccctgatggacc 11970697
Query: 840 agacaggaga 849
||||||||||
Sbjct: 11970698 agacaggaga 11970707
Score = 135 bits (68), Expect = 7e-29
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 356 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 415
|||||||||||||| || || ||||||||||||||||| || || ||||||||||||||
Sbjct: 12025709 caggagatgacagatgaactcgatcactacaccaatacttatcaagtctactccaaggac 12025768
Query: 416 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 475
| ||||| ||| | |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 12025769 cctaagaagtgtcaagaattccttggcttgccagaagtcatcaactggaaacaacacttg 12025828
Query: 476 cagatccaaagt 487
||||| ||||||
Sbjct: 12025829 cagattcaaagt 12025840
Score = 135 bits (68), Expect = 7e-29
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 356 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 415
|||||||||||||| || || ||||||||||||||||| || || ||||||||||||||
Sbjct: 12214871 caggagatgacagatgaactcgatcactacaccaatacttatcaagtctactccaaggac 12214930
Query: 416 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 475
| ||||| ||| | |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 12214931 cctaagaagtgtcaagaattccttggcttgccagaagtcatcaactggaaacaacacttg 12214990
Query: 476 cagatccaaagt 487
||||| ||||||
Sbjct: 12214991 cagattcaaagt 12215002
Score = 111 bits (56), Expect = 1e-21
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 356 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 415
|||||||||||||| ||| |||||||| |||||||||||||||| ||||| || |||||
Sbjct: 12066664 caggagatgacagatgactttgatcaccacaccaatacctaccaaatctattctaaggat 12066723
Query: 416 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 475
|| ||||||||| | ||| |||| || | |||| |||||||||||||| |||||||||
Sbjct: 12066724 ctcaagaactgtcacgaagcccttagcacatcagatgtcatcaactggaagcagcatttg 12066783
Query: 476 cagatcca 483
||||||||
Sbjct: 12066784 cagatcca 12066791
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,855,695
Number of extensions: 3731
Number of successful extensions: 3731
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3728
Number of HSP's successfully gapped: 23
Length of query: 1287
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1266
Effective length of database: 2,808,413,156
Effective search space: 3555451055496
Effective search space used: 3555451055496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)