Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012836
(1060 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803479.1| glycine N-acyltransferase [Bos taurus]. 241 e-116
Alignment gi|NP_001095518.1| hypothetical protein LOC518623 [Bos taurus]. 216 e-101
Alignment gi|NP_001178259.1| glycine N-acyltransferase-like protein 2 [Bo... 143 3e-53
Alignment gi|XP_002693817.1| PREDICTED: glycine-N-acyltransferase-like 2-... 143 3e-53
Alignment gi|NP_803452.1| glycine N-phenylacetyltransferase [Bos taurus]. 205 6e-53
Alignment gi|NP_001138533.1| glycine N-acyltransferase-like protein 3 [Bo... 95 4e-32
>ref|NP_803479.1| glycine N-acyltransferase [Bos taurus].
Length = 295
Score = 241 bits (615), Expect(3) = e-116
Identities = 119/156 (76%), Positives = 128/156 (82%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MFLLQGAQMLQMLE SLRKSLP SLKVYGTV HMN GNPF LKALVDKWPDF TVVIRPQ
Sbjct: 1 MFLLQGAQMLQMLEKSLRKSLPMSLKVYGTVMHMNHGNPFNLKALVDKWPDFQTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQ+M DDLDHYTNTYH+YS+DLKNC+EFL LPEVINWK NEVIQ LAAT
Sbjct: 61 EQDMKDDLDHYTNTYHVYSEDLKNCQEFLDLPEVINWKQHLQIQSTQSSLNEVIQNLAAT 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTD 642
KSF V++++NILYM ETIKEL PSLLD KNL + D
Sbjct: 121 KSFKVKRSKNILYMASETIKELTPSLLDVKNLPVGD 156
Score = 145 bits (365), Expect(3) = e-116
Identities = 66/93 (70%), Positives = 79/93 (84%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P D E F+LSS++PSHAA+VN+ W FGGNERS RFIERCI++FP+ CLLGPEGTP++W
Sbjct: 159 PKAIDPEMFKLSSVDPSHAAVVNRFWLFGGNERSLRFIERCIQSFPNFCLLGPEGTPVSW 218
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
SLMDQTGEMRMAGT EYRAQGLVT+ I+ +Q
Sbjct: 219 SLMDQTGEMRMAGTLPEYRAQGLVTHAIYQQAQ 251
Score = 72.8 bits (177), Expect(3) = e-116
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L K GFP YSHVD KN+IMQKMS +LNH+ MP WNQWNC PL
Sbjct: 253 LLKRGFPVYSHVDPKNQIMQKMSQSLNHVPMPSDWNQWNCEPL 295
>ref|NP_001095518.1| hypothetical protein LOC518623 [Bos taurus].
Length = 295
Score = 216 bits (550), Expect(3) = e-101
Identities = 108/153 (70%), Positives = 120/153 (78%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M LQG QMLQMLE SLRKS+P SLKVYGT FH+NQGNPFKLKALVDKWPDFNTVVIRPQ
Sbjct: 1 MLHLQGPQMLQMLEKSLRKSIPASLKVYGTTFHINQGNPFKLKALVDKWPDFNTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQEMTDDLDHYTNTY +YSKD K C+EFLG PEVINWK ++VI+ LAAT
Sbjct: 61 EQEMTDDLDHYTNTYQVYSKDPKKCQEFLGSPEVINWKQHLQIQSSQSSLDDVIKNLAAT 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLS 633
KS V+QT+ LYM E K+LA SLL+ KN+S
Sbjct: 121 KSGKVKQTQCFLYMASEPGKKLAASLLEAKNVS 153
Score = 133 bits (334), Expect(3) = e-101
Identities = 58/82 (70%), Positives = 71/82 (86%)
Frame = +3
Query: 648 QEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQ 827
Q+ LS+L+P+HA LVN+LW FGGNERS+RFIERCI+ FPS CLLGPEG P++W LMDQ
Sbjct: 164 QKMLTLSTLDPAHAVLVNKLWYFGGNERSRRFIERCIQTFPSTCLLGPEGAPVSWMLMDQ 223
Query: 828 TGEMRMAGTKLEYRAQGLVTYV 893
TGE+RMAGT EYRAQGL++Y+
Sbjct: 224 TGELRMAGTLPEYRAQGLISYI 245
Score = 59.3 bits (142), Expect(3) = e-101
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L KLGFP YSHVDK N IMQK+ + + +P WNQWN VPL
Sbjct: 253 LDKLGFPLYSHVDKANHIMQKVCSNMQSIFVPNGWNQWNFVPL 295
>ref|NP_001178259.1| glycine N-acyltransferase-like protein 2 [Bos taurus].
Length = 299
Score = 143 bits (360), Expect(3) = 3e-53
Identities = 68/134 (50%), Positives = 90/134 (67%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MF+L+ Q LQ+L SL +S+P SLKVYGT+FH+ NPF L+ LVD WP++ TVVIRPQ
Sbjct: 1 MFVLREPQQLQILYESLEESIPESLKVYGTLFHIRNKNPFNLEVLVDAWPEYQTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
++EM DDLD+YTNTYHI++K EE L P+VINW+ E IQK+AA+
Sbjct: 61 KEEMKDDLDYYTNTYHIFTKAPDKLEEVLACPQVINWEQAFQIQGCQESLGEAIQKVAAS 120
Query: 535 KSFNVQQTENILYM 576
KS V +L++
Sbjct: 121 KSVQVDYLRTVLFV 134
Score = 77.4 bits (189), Expect(3) = 3e-53
Identities = 36/77 (46%), Positives = 52/77 (67%)
Frame = +3
Query: 648 QEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQ 827
+E FQ L+ SHA LVN+ W+ G NE+S +++ERC++NF +L EG PI+W L +Q
Sbjct: 165 KETFQNIFLDVSHARLVNEHWELGKNEKSLKYVERCLQNFAGFGVLSSEGKPISWFLTEQ 224
Query: 828 TGEMRMAGTKLEYRAQG 878
+ E+RM T +YR QG
Sbjct: 225 SCEIRMGYTFPKYRGQG 241
Score = 28.5 bits (62), Expect(3) = 3e-53
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +2
Query: 932 PSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
P Y H + + Q+ + + C W+QW C P
Sbjct: 260 PFYIHAAEDKEKTQQTLLSFGFKNVLCGWHQWKCTP 295
>ref|XP_002693817.1| PREDICTED: glycine-N-acyltransferase-like 2-like [Bos taurus].
Length = 299
Score = 143 bits (360), Expect(3) = 3e-53
Identities = 68/134 (50%), Positives = 90/134 (67%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MF+L+ Q LQ+L SL +S+P SLKVYGT+FH+ NPF L+ LVD WP++ TVVIRPQ
Sbjct: 1 MFVLREPQQLQILYESLEESIPESLKVYGTLFHIRNKNPFNLEVLVDAWPEYQTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
++EM DDLD+YTNTYHI++K EE L P+VINW+ E IQK+AA+
Sbjct: 61 KEEMKDDLDYYTNTYHIFTKAPDKLEEVLACPQVINWEQAFQIQGCQESLGEAIQKVAAS 120
Query: 535 KSFNVQQTENILYM 576
KS V +L++
Sbjct: 121 KSVQVDYLRTVLFV 134
Score = 77.4 bits (189), Expect(3) = 3e-53
Identities = 36/77 (46%), Positives = 52/77 (67%)
Frame = +3
Query: 648 QEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQ 827
+E FQ L+ SHA LVN+ W+ G NE+S +++ERC++NF +L EG PI+W L +Q
Sbjct: 165 KETFQNIFLDVSHARLVNEHWELGKNEKSLKYVERCLQNFAGFGVLSSEGKPISWFLTEQ 224
Query: 828 TGEMRMAGTKLEYRAQG 878
+ E+RM T +YR QG
Sbjct: 225 SCEIRMGYTFPKYRGQG 241
Score = 28.5 bits (62), Expect(3) = 3e-53
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +2
Query: 932 PSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
P Y H + + Q+ + + C W+QW C P
Sbjct: 260 PFYIHAAEDKEKTQQTLLSFGFKNVLCGWHQWKCTP 295
>ref|NP_803452.1| glycine N-phenylacetyltransferase [Bos taurus].
Length = 296
Score = 205 bits (521), Expect = 6e-53
Identities = 106/173 (61%), Positives = 121/173 (69%), Gaps = 1/173 (0%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MF LQG Q+LQMLE SLRKSLP SLKVYGTVFHMNQGNPF LKALVDKWPDF TVVIRPQ
Sbjct: 1 MFHLQGPQLLQMLEKSLRKSLPESLKVYGTVFHMNQGNPFNLKALVDKWPDFKTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEE-FLGLPEVINWKXXXXXXXXXXXXNEVIQKLAA 531
EQEM DD DHYTNTY IYSKDL NC+E L +VINWK NEV+Q LAA
Sbjct: 61 EQEMADDFDHYTNTYQIYSKDLNNCQESXLATSDVINWKQHLQIQSSQSSLNEVVQNLAA 120
Query: 532 TKSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
TK V+ T+ ILY+ ET ++L PSL + KNL + + N + L ++
Sbjct: 121 TKFVKVEHTQCILYVMPETARKLLPSLPETKNLPVGYGAPKAINQEMFKLSSM 173
Score = 135 bits (341), Expect(2) = 2e-45
Identities = 60/93 (64%), Positives = 76/93 (81%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P +QE F+LSS++P+HAALVN+ W FGGNERSQRFIERCIR FP+ CLLGPEGTP +W
Sbjct: 160 PKAINQEMFKLSSMDPTHAALVNKFWHFGGNERSQRFIERCIRAFPTFCLLGPEGTPASW 219
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
SLMDQTGE+RM T EYR GL+++++ H++
Sbjct: 220 SLMDQTGEIRMGATLPEYRGHGLISHMLAVHTR 252
Score = 66.2 bits (160), Expect(2) = 2e-45
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L +LG P Y+H DK NKI+QK+SH L+H+ +P WNQWNC PL
Sbjct: 254 LDQLGIPVYNHTDKANKIVQKVSHNLHHIAIPHGWNQWNCEPL 296
>ref|NP_001138533.1| glycine N-acyltransferase-like protein 3 [Bos taurus].
Length = 287
Score = 95.1 bits (235), Expect(2) = 4e-32
Identities = 46/126 (36%), Positives = 72/126 (57%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M +L + L +LE L+ P SLKVYG V ++N+GNPF+ + ++D WPDF ++ R Q
Sbjct: 1 MQVLNCSTKLLLLEKMLKSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPDFKAIITRRQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
++ TD+LDHYTN Y ++ KD+ + L VINW +V + +A +
Sbjct: 61 KEAETDNLDHYTNAYAVFYKDVNAYRQLLEEHGVINWDQVFQIQGLQSELYDVSKAVADS 120
Query: 535 KSFNVQ 552
K +V+
Sbjct: 121 KQVDVK 126
Score = 62.0 bits (149), Expect(2) = 4e-32
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +3
Query: 660 QLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEM 839
QL+ L + L+NQ W GGNE+ +R+I I FPSVC+ +G P++WS+ DQ M
Sbjct: 152 QLTYLSIADVDLLNQTWSRGGNEQCRRYIANLISCFPSVCVRDDKGNPMSWSMTDQFATM 211
Query: 840 RMAGTKLEYRAQGLVTYVI 896
T E+R +G VI
Sbjct: 212 CHGYTMPEHRRKGYNRLVI 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,549,935
Number of extensions: 1046600
Number of successful extensions: 2842
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2841
Number of HSP's successfully gapped: 17
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012836
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012836
(1060 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540581.1| PREDICTED: similar to glycine-N-acyltransferase... 226 4e-59
Alignment gi|XP_540580.2| PREDICTED: similar to glycine-N-acyltransferase... 206 2e-53
Alignment gi|XP_852587.1| PREDICTED: similar to glycine-N-acyltransferase... 89 9e-18
>ref|XP_540581.1| PREDICTED: similar to glycine-N-acyltransferase isoform a [Canis
familiaris].
Length = 294
Score = 226 bits (575), Expect = 4e-59
Identities = 115/170 (67%), Positives = 125/170 (73%)
Frame = +1
Query: 181 LLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQ 360
LLQGAQMLQ LE SLRKSLP SLKVYGTVFHMNQGNPFKLKALVDKWPDF TVVIRPQE+
Sbjct: 2 LLQGAQMLQTLEKSLRKSLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFTTVVIRPQEE 61
Query: 361 EMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKS 540
EM DD DHYTNTY IYSKDLKNC+EFLG PEVINWK NEV+Q LAATKS
Sbjct: 62 EMIDDFDHYTNTYQIYSKDLKNCQEFLGSPEVINWKQHLQIQSSQPSLNEVMQNLAATKS 121
Query: 541 FNVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
F V+QT+ L+ TIK+L PSLLD K L+ N + L +L
Sbjct: 122 FQVKQTQCFLFFLANTIKKLVPSLLDVKKLAPGGGKPKPINQEMFKLSSL 171
Score = 139 bits (349), Expect(2) = 3e-48
Identities = 63/93 (67%), Positives = 77/93 (82%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P +QE F+LSSL+ +HA VN+ W FGGNERSQRFIERCI+ FP+ CLLGPEGTP++W
Sbjct: 158 PKPINQEMFKLSSLDVTHATFVNKFWHFGGNERSQRFIERCIQTFPTFCLLGPEGTPVSW 217
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
SLMDQTGE+RMAGT EY+ QGLV++VI+S Q
Sbjct: 218 SLMDQTGELRMAGTLPEYQGQGLVSHVIYSQVQ 250
Score = 72.4 bits (176), Expect(2) = 3e-48
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L KL FP YSH DK +KIMQKMS+ L+ LRMPC WNQW+C PL
Sbjct: 252 LEKLSFPLYSHTDKSHKIMQKMSYRLHFLRMPCDWNQWHCTPL 294
>ref|XP_540580.2| PREDICTED: similar to glycine-N-acyltransferase (predicted) [Canis
familiaris].
Length = 295
Score = 206 bits (525), Expect = 2e-53
Identities = 104/172 (60%), Positives = 119/172 (69%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MF LQG+Q+LQMLE SLRKSLP SLKVYGT+FHMNQGNPFKLKALVDKWPDF TVV RPQ
Sbjct: 1 MFHLQGSQVLQMLEKSLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFTTVVTRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
E+EM DD DHYTNTY IYSK+ +NC+EFLG VINWK NEVIQ LAA
Sbjct: 61 EEEMADDFDHYTNTYQIYSKNPQNCQEFLGASSVINWKQHLQIQSTQSSLNEVIQNLAAA 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
V Q + I+Y E ++L PSLL+ KNL L + N + L +L
Sbjct: 121 NLVKVNQQQGIVYTMPERARKLLPSLLEAKNLPLESGRAKTINQEMFKLSSL 172
Score = 131 bits (330), Expect(2) = 5e-44
Identities = 60/87 (68%), Positives = 75/87 (86%)
Frame = +3
Query: 645 DQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMD 824
+QE F+LSSL+ +HAALVN+ W FGGNERSQRFIERCI+ FP+ CLLGPEGT ++WSLMD
Sbjct: 163 NQEMFKLSSLDVTHAALVNKFWYFGGNERSQRFIERCIQTFPTFCLLGPEGTLVSWSLMD 222
Query: 825 QTGEMRMAGTKLEYRAQGLVTYVIFSH 905
QTGE+RM GT E+RA+GLV+Y++ H
Sbjct: 223 QTGEIRMGGTVPEHRARGLVSYLMDIH 249
Score = 65.5 bits (158), Expect(2) = 5e-44
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L KL +P+Y H NK +QKMSH+L H+ MPC WNQW+CVPL
Sbjct: 253 LDKLDYPTYYHTFTSNKPVQKMSHSLGHICMPCDWNQWHCVPL 295
>ref|XP_852587.1| PREDICTED: similar to glycine-N-acyltransferase (predicted) [Canis
familiaris].
Length = 273
Score = 88.6 bits (218), Expect = 9e-18
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Frame = +1
Query: 253 VYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDLDHYTNTYHIYSKDLKNCE 432
VYG V ++N+GNPF+ + +VD WPDF V+ R Q++ TD+LDHYTN Y ++ KD++ +
Sbjct: 16 VYGAVMNINRGNPFQKEVVVDSWPDFKAVITRRQKEAETDNLDHYTNAYAVFYKDVRAYQ 75
Query: 433 EFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKSFNVQQT--ENILYMTLETIKELAP 606
+ L +VINW +V + +A +K V+ T + + + T+ + +
Sbjct: 76 QLLEERDVINWDQVFQIQGLQSELCDVSKAVANSKQLGVKLTSFKAVHFSPHSTLPDTSS 135
Query: 607 SLLDEKNLSLTDVTKSSFNSHPWN 678
+ L+ VT + + W+
Sbjct: 136 LMSSPPRLTYLSVTDADLLNRTWS 159
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/73 (41%), Positives = 45/73 (61%)
Frame = +3
Query: 660 QLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEM 839
+L+ L + A L+N+ W GGNE+ ++I+ I FPSVC+ +G P++WSL DQ M
Sbjct: 142 RLTYLSVTDADLLNRTWSRGGNEQCLQYIKNLISCFPSVCVRDVKGNPVSWSLTDQFATM 201
Query: 840 RMAGTKLEYRAQG 878
+ T EYR +G
Sbjct: 202 CHSYTLPEYRRKG 214
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,260,366
Number of extensions: 1080655
Number of successful extensions: 2967
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2967
Number of HSP's successfully gapped: 8
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012836
(1060 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122750.2| PREDICTED: glycine N-phenylacetyltransferase... 193 2e-98
Alignment gi|XP_003122749.1| PREDICTED: glycine N-acyltransferase-like is... 288 4e-78
Alignment gi|XP_003122748.1| PREDICTED: glycine N-acyltransferase-like is... 288 4e-78
Alignment gi|XP_003122754.2| PREDICTED: glycine N-acyltransferase-like [S... 137 3e-71
Alignment gi|XP_003122785.2| PREDICTED: glycine N-acyltransferase-like pr... 133 3e-54
Alignment gi|XP_003128486.2| PREDICTED: glycine N-acyltransferase-like pr... 97 1e-33
>ref|XP_003122750.2| PREDICTED: glycine N-phenylacetyltransferase-like isoform 1 [Sus
scrofa].
Length = 298
Score = 193 bits (490), Expect(3) = 2e-98
Identities = 102/155 (65%), Positives = 111/155 (71%), Gaps = 3/155 (1%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPT---SLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVI 345
M LQ AQML LE S RK LP +LKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVI
Sbjct: 1 MLHLQSAQMLLRLEKSGRKYLPCPEDNLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVI 60
Query: 346 RPQEQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKL 525
RPQEQEMTDD DH+TNTY IYSKDLKNC E L +VINWK +EVIQ L
Sbjct: 61 RPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNL 120
Query: 526 AATKSFNVQQTENILYMTLETIKELAPSLLDEKNL 630
A TK V+QT+ ILY+T E +L PSL + KNL
Sbjct: 121 ATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNL 155
Score = 136 bits (343), Expect(3) = 2e-98
Identities = 63/93 (67%), Positives = 76/93 (81%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P +QE FQ+SS++ +HAALVN+ W FGGNERSQRFIERCIRNF S+CLLGPEGTPI+W
Sbjct: 162 PKASNQELFQVSSMDVTHAALVNKFWHFGGNERSQRFIERCIRNFLSICLLGPEGTPISW 221
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
SLMDQTGE+RM T EYR QGL++ ++ H Q
Sbjct: 222 SLMDQTGEIRMGATLPEYRGQGLISNLLCVHIQ 254
Score = 69.7 bits (169), Expect(3) = 2e-98
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L + GFP+Y H DK NK +QK++H L+H+ PC WNQWNCVPL
Sbjct: 256 LDERGFPTYMHTDKANKTVQKINHNLHHIPFPCGWNQWNCVPL 298
>ref|XP_003122749.1| PREDICTED: glycine N-acyltransferase-like isoform 2 [Sus scrofa].
Length = 295
Score = 288 bits (737), Expect = 4e-78
Identities = 145/172 (84%), Positives = 149/172 (86%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ
Sbjct: 1 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWK NEVIQKLAA
Sbjct: 61 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKQHLQIQSSQSSLNEVIQKLAAA 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTD + + + L +L
Sbjct: 121 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSL 172
Score = 186 bits (473), Expect(2) = 5e-71
Identities = 90/93 (96%), Positives = 90/93 (96%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P DQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW
Sbjct: 159 PKAIDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 218
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ
Sbjct: 219 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 251
Score = 100 bits (248), Expect(2) = 5e-71
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 911 VLTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
VLTKLGFPSYSHVDK+NKIMQKMSHTLNHLRMPCSWNQWNCVPL
Sbjct: 252 VLTKLGFPSYSHVDKRNKIMQKMSHTLNHLRMPCSWNQWNCVPL 295
>ref|XP_003122748.1| PREDICTED: glycine N-acyltransferase-like isoform 1 [Sus scrofa].
Length = 295
Score = 288 bits (737), Expect = 4e-78
Identities = 145/172 (84%), Positives = 149/172 (86%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ
Sbjct: 1 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWK NEVIQKLAA
Sbjct: 61 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKQHLQIQSSQSSLNEVIQKLAAA 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTD + + + L +L
Sbjct: 121 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDGKPKAIDQEQFQLSSL 172
Score = 186 bits (473), Expect(2) = 5e-71
Identities = 90/93 (96%), Positives = 90/93 (96%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P DQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW
Sbjct: 159 PKAIDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 218
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ
Sbjct: 219 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 251
Score = 100 bits (248), Expect(2) = 5e-71
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 911 VLTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
VLTKLGFPSYSHVDK+NKIMQKMSHTLNHLRMPCSWNQWNCVPL
Sbjct: 252 VLTKLGFPSYSHVDKRNKIMQKMSHTLNHLRMPCSWNQWNCVPL 295
>ref|XP_003122754.2| PREDICTED: glycine N-acyltransferase-like [Sus scrofa].
Length = 281
Score = 137 bits (346), Expect(3) = 3e-71
Identities = 63/88 (71%), Positives = 74/88 (84%)
Frame = +3
Query: 648 QEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQ 827
Q+ QLSSL+PSHAALVN W FGGNERSQRFIERCI+ FP+ CLLGPEGTP++W LMDQ
Sbjct: 151 QKILQLSSLDPSHAALVNTFWYFGGNERSQRFIERCIKTFPNWCLLGPEGTPVSWVLMDQ 210
Query: 828 TGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
TGEMRMAGT +YR QGL+TY+ + +Q
Sbjct: 211 TGEMRMAGTMPKYRRQGLITYLSYIQTQ 238
Score = 104 bits (259), Expect(3) = 3e-71
Identities = 53/94 (56%), Positives = 64/94 (68%)
Frame = +1
Query: 361 EMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKS 540
EMTD+LDHYTNTY +YSKD K C+EFLGLPEVINWK ++VI+ LAA K
Sbjct: 50 EMTDELDHYTNTYQVYSKDPKKCQEFLGLPEVINWKQHLQIQSTQSSLDDVIKNLAALKL 109
Query: 541 FNVQQTENILYMTLETIKELAPSLLDEKNLSLTD 642
V+QT+ +LYM E K++A SLLD KN S D
Sbjct: 110 GKVKQTQCLLYMVSELGKKMANSLLDAKNPSPND 143
Score = 66.6 bits (161), Expect(3) = 3e-71
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
L KLGFP YSHVD+ N IMQK++ + ++RMPC WNQWN +P
Sbjct: 240 LNKLGFPMYSHVDRANHIMQKLALNMKNIRMPCDWNQWNFLP 281
>ref|XP_003122785.2| PREDICTED: glycine N-acyltransferase-like protein 2-like [Sus
scrofa].
Length = 321
Score = 133 bits (335), Expect(3) = 3e-54
Identities = 65/152 (42%), Positives = 97/152 (63%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MF+L+ LQ L +L KSLP S KVYG ++++ NPF L+ LVD WPD+ T++ RPQ
Sbjct: 22 MFVLREPLKLQSLYETLEKSLPESTKVYGAIYNIKNKNPFNLEVLVDAWPDYQTIITRPQ 81
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
++EM DDLD+YTNTYHI++K + EE L P+VINW+ E I+K++A+
Sbjct: 82 KEEMKDDLDYYTNTYHIFTKAPEKLEEVLACPQVINWEQAFQIQGCQESVGEAIRKISAS 141
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNL 630
KS V +L+M++ K+L ++ D+ +L
Sbjct: 142 KSVQVDYKRTMLFMSVNE-KKLKKTIDDKIDL 172
Score = 82.8 bits (203), Expect(3) = 3e-54
Identities = 36/77 (46%), Positives = 54/77 (70%)
Frame = +3
Query: 648 QEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQ 827
+E F+ L+ S+A LVN+ W FG NERS +++ERC++NFP + GPE P++W +M+Q
Sbjct: 187 KENFRTIFLDASYAGLVNEHWDFGKNERSLKYVERCLQNFPGFGVWGPEECPVSWVVMEQ 246
Query: 828 TGEMRMAGTKLEYRAQG 878
+ E+RM T +YR QG
Sbjct: 247 SCELRMGYTVPKYRGQG 263
Score = 35.4 bits (80), Expect(3) = 3e-54
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
L P Y HV ++ + +QK+ T+ C W+QW C P
Sbjct: 276 LISKNMPFYLHVAEEKEEIQKLMRTVGCKESLCGWHQWICTP 317
>ref|XP_003128486.2| PREDICTED: glycine N-acyltransferase-like protein 3-like [Sus
scrofa].
Length = 288
Score = 97.4 bits (241), Expect(2) = 1e-33
Identities = 47/126 (37%), Positives = 73/126 (57%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M +L + L LE LR P SLKVYG V ++N+GNPF+ + ++D WP+F V+ R Q
Sbjct: 1 MLVLNCSTKLLTLEKVLRSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPNFKAVITRRQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
++ TD+LDHYTN Y ++ KD++ ++ L VINW +V + +A +
Sbjct: 61 KEAETDNLDHYTNAYAVFYKDVRAYQQLLEEQGVINWDQVFQIQGLQSELYDVSKTVATS 120
Query: 535 KSFNVQ 552
K +V+
Sbjct: 121 KQLDVK 126
Score = 64.3 bits (155), Expect(2) = 1e-33
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +3
Query: 660 QLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEM 839
+LS L + A L+NQ W GGNE+ +R+I + I FPSVC+ +G P++WS DQ M
Sbjct: 153 KLSCLSVADADLLNQTWSRGGNEQCRRYIAKLISCFPSVCVRDDKGNPVSWSFTDQFATM 212
Query: 840 RMAGTKLEYRAQG 878
T E+R +G
Sbjct: 213 CHGYTLTEHRRKG 225
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,446,178
Number of extensions: 671740
Number of successful extensions: 1839
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1839
Number of HSP's successfully gapped: 17
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012836
(1060 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161379.1| glycine N-acyltransferase-like protein [Mus ... 201 e-100
Alignment gi|NP_001013784.2| glycine N-acyltransferase-like protein [Mus ... 201 e-100
Alignment gi|NP_083826.1| glycine N-acyltransferase-like protein Keg1 [Mu... 202 7e-95
Alignment gi|NP_666047.1| glycine N-acyltransferase [Mus musculus]. 209 4e-54
Alignment gi|NP_001138532.1| glycine N-acyltransferase-like protein 3 [Mu... 97 2e-20
>ref|NP_001161379.1| glycine N-acyltransferase-like protein [Mus musculus].
Length = 296
Score = 201 bits (511), Expect(3) = e-100
Identities = 101/150 (67%), Positives = 115/150 (76%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M L+ +QMLQMLE+SLRK LP SLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVV+RP+
Sbjct: 1 MLHLRSSQMLQMLESSLRKYLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVVRPR 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQEM DDLD +TNTY IYSKD K+C EFLG P+VINWK NE I LAA
Sbjct: 61 EQEMGDDLDQHTNTYQIYSKDPKHCLEFLGTPDVINWKQHLQIQSSQSNLNEAIMDLAAG 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEK 624
K V++T+ ILYM ET K+L PSLL++K
Sbjct: 121 KMVKVKRTQCILYMMPETAKKLVPSLLEDK 150
Score = 135 bits (341), Expect(3) = e-100
Identities = 60/92 (65%), Positives = 79/92 (85%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P DQE F+LS+L+ +HA LV++ WQFGGNERSQRFI RCI+ FPS CLLGPEGTP++W
Sbjct: 160 PRAIDQEMFKLSTLDVTHAPLVDKFWQFGGNERSQRFIGRCIQIFPSSCLLGPEGTPVSW 219
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHS 908
+LMDQTGE+RMAGT +YRAQGL++++I++ +
Sbjct: 220 ALMDQTGEIRMAGTVPDYRAQGLISHIIYAQT 251
Score = 68.9 bits (167), Expect(3) = e-100
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
+ K G+P Y+H ++ NK++QKMSHTL+H+ MPC WNQW C PL
Sbjct: 254 MDKRGYPVYNHTEQTNKVIQKMSHTLHHVPMPCDWNQWYCAPL 296
>ref|NP_001013784.2| glycine N-acyltransferase-like protein [Mus musculus].
Length = 296
Score = 201 bits (511), Expect(3) = e-100
Identities = 101/150 (67%), Positives = 115/150 (76%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M L+ +QMLQMLE+SLRK LP SLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVV+RP+
Sbjct: 1 MLHLRSSQMLQMLESSLRKYLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVVRPR 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQEM DDLD +TNTY IYSKD K+C EFLG P+VINWK NE I LAA
Sbjct: 61 EQEMGDDLDQHTNTYQIYSKDPKHCLEFLGTPDVINWKQHLQIQSSQSNLNEAIMDLAAG 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEK 624
K V++T+ ILYM ET K+L PSLL++K
Sbjct: 121 KMVKVKRTQCILYMMPETAKKLVPSLLEDK 150
Score = 135 bits (341), Expect(3) = e-100
Identities = 60/92 (65%), Positives = 79/92 (85%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P DQE F+LS+L+ +HA LV++ WQFGGNERSQRFI RCI+ FPS CLLGPEGTP++W
Sbjct: 160 PRAIDQEMFKLSTLDVTHAPLVDKFWQFGGNERSQRFIGRCIQIFPSSCLLGPEGTPVSW 219
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHS 908
+LMDQTGE+RMAGT +YRAQGL++++I++ +
Sbjct: 220 ALMDQTGEIRMAGTVPDYRAQGLISHIIYAQT 251
Score = 68.9 bits (167), Expect(3) = e-100
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
+ K G+P Y+H ++ NK++QKMSHTL+H+ MPC WNQW C PL
Sbjct: 254 MDKRGYPVYNHTEQTNKVIQKMSHTLHHVPMPCDWNQWYCAPL 296
>ref|NP_083826.1| glycine N-acyltransferase-like protein Keg1 [Mus musculus].
Length = 295
Score = 202 bits (514), Expect(3) = 7e-95
Identities = 99/152 (65%), Positives = 114/152 (75%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
MF LQ +Q LQ+LENSLRK LP SLKVYGTVFH+NQGNPFKLK LVDKWPDFNTVVIRPQ
Sbjct: 1 MFCLQSSQALQVLENSLRKHLPESLKVYGTVFHINQGNPFKLKTLVDKWPDFNTVVIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
E++MTDDLDHY NTY +YSKD K+C+EFLG EVINWK +VI+ L AT
Sbjct: 61 EEDMTDDLDHYNNTYLVYSKDPKHCQEFLGSSEVINWKQHLQIQSSQSDLGKVIESLGAT 120
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNL 630
V+ + LYM +T K+LAPSL+D KNL
Sbjct: 121 NLGKVKHKQCFLYMVCQTAKKLAPSLMDAKNL 152
Score = 121 bits (303), Expect(3) = 7e-95
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +3
Query: 645 DQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMD 824
DQ+ F+ +SL+ +HAALVN LW FGGNE+SQ+FIERCI FPS C++GPEGTP++W+LMD
Sbjct: 163 DQQLFKFASLDVTHAALVNSLWHFGGNEKSQKFIERCIFTFPSFCIMGPEGTPVSWTLMD 222
Query: 825 QTGEMRMAGTKLEYRAQGLVTYV 893
TGE+RM GT +YR Q L+ +V
Sbjct: 223 HTGELRMGGTLPKYRRQSLIYHV 245
Score = 64.7 bits (156), Expect(3) = 7e-95
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L KLGFP Y+HVDK N +Q+M L + +PC+WNQWNCVPL
Sbjct: 253 LEKLGFPMYAHVDKANFTVQRMVGLLGQILLPCTWNQWNCVPL 295
>ref|NP_666047.1| glycine N-acyltransferase [Mus musculus].
Length = 296
Score = 209 bits (531), Expect = 4e-54
Identities = 105/169 (62%), Positives = 123/169 (72%)
Frame = +1
Query: 184 LQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQE 363
LQGAQMLQMLE SLRK LP SLKVYGTV+HM GNPF LKALVDKWPDFNTVV+RPQEQE
Sbjct: 5 LQGAQMLQMLEKSLRKYLPESLKVYGTVYHMIHGNPFNLKALVDKWPDFNTVVVRPQEQE 64
Query: 364 MTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKSF 543
MTDDLD Y NTY +YSKD +NC+EFL EVINWK N+ IQ LA+ +SF
Sbjct: 65 MTDDLDFYINTYQVYSKDPQNCQEFLESSEVINWKQHLQIQSSQSHLNKTIQNLASIQSF 124
Query: 544 NVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
++ +ENILY++ ETIK+L PSLLD KNLS + + + L +L
Sbjct: 125 QIKHSENILYVSSETIKKLFPSLLDTKNLSTGSGKPKAIDQDKFKLSSL 173
Score = 141 bits (356), Expect(2) = 7e-49
Identities = 65/93 (69%), Positives = 77/93 (82%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P DQ++F+LSSL+ HAALVN+ W FGGNERSQRFIERCI+NFPS C+LGPEGTP +W
Sbjct: 160 PKAIDQDKFKLSSLDVVHAALVNKFWLFGGNERSQRFIERCIKNFPSSCVLGPEGTPASW 219
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
+LMDQTGEMRM GT EYR QGLV++V+ S Q
Sbjct: 220 TLMDQTGEMRMGGTMPEYRLQGLVSFVVHSQDQ 252
Score = 71.6 bits (174), Expect(2) = 7e-49
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +2
Query: 911 VLTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
++TK G+P YSH +K N MQKMS+TL HL MPC+WNQW C+P+
Sbjct: 253 IMTKRGYPVYSHTEKSNIAMQKMSYTLQHLPMPCAWNQWKCMPM 296
>ref|NP_001138532.1| glycine N-acyltransferase-like protein 3 [Mus musculus].
Length = 290
Score = 97.1 bits (240), Expect = 2e-20
Identities = 41/97 (42%), Positives = 66/97 (68%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M +L+ + L +LEN L+ P SLKVYG V ++N+GNPF+ + ++D WP+F ++ R +
Sbjct: 1 MLVLKCSTKLFILENMLKSHFPESLKVYGAVMNINRGNPFQKEVVLDSWPNFKVIITRRE 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINW 465
+ TD+LDHYTN Y ++ KD++ ++ L +VINW
Sbjct: 61 REAETDNLDHYTNAYAVFYKDIRAYQQLLEEHDVINW 97
Score = 55.8 bits (133), Expect = 5e-08
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +3
Query: 660 QLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEM 839
+L+ L S A L+N+ W GGN++ R++ I FPSVC+ +G P++W + DQ M
Sbjct: 155 RLTYLSVSDADLLNRTWSRGGNQQCLRYLANLIACFPSVCVRDEKGNPVSWGITDQFATM 214
Query: 840 RMAGTKLEYRAQG 878
T ++R +G
Sbjct: 215 CHGYTLPDHRRKG 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,544,494
Number of extensions: 904842
Number of successful extensions: 2411
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 14
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012836
(1060 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_964011.2| glycine N-acyltransferase isoform a [Homo sapie... 220 1e-57
Alignment gi|NP_005829.3| glycine N-acyltransferase isoform b [Homo sapie... 219 3e-57
Alignment gi|NP_659453.3| glycine N-acyltransferase-like protein 2 [Homo ... 128 1e-50
Alignment gi|NP_001207425.1| glycine N-acyltransferase-like protein 1 iso... 127 7e-49
Alignment gi|NP_001207423.1| glycine N-acyltransferase-like protein 1 iso... 127 7e-49
Alignment gi|NP_542392.2| glycine N-acyltransferase-like protein 1 isofor... 111 4e-44
Alignment gi|NP_001010904.1| glycine N-acyltransferase-like protein 3 [Ho... 99 9e-33
>ref|NP_964011.2| glycine N-acyltransferase isoform a [Homo sapiens].
Length = 296
Score = 220 bits (561), Expect = 1e-57
Identities = 111/172 (64%), Positives = 124/172 (72%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M LQGAQMLQMLE SLRKSLP SLKVYGTVFH+N GNPF LKA+VDKWPDFNTVV+ PQ
Sbjct: 2 MLPLQGAQMLQMLEKSLRKSLPASLKVYGTVFHINHGNPFNLKAVVDKWPDFNTVVVCPQ 61
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQ+MTDDLDHYTNTY IYSKD +NC+EFLG PE+INWK NE IQ LAA
Sbjct: 62 EQDMTDDLDHYTNTYQIYSKDPQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAI 121
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLSLTDVTKSSFNSHPWNLPTL 690
KSF V+QT+ ILYM ET KEL P LL K LS + N + L ++
Sbjct: 122 KSFKVKQTQRILYMAAETAKELTPFLLKSKILSPNGGKPKAINQEMFKLSSM 173
Score = 145 bits (366), Expect(2) = 4e-50
Identities = 66/93 (70%), Positives = 77/93 (82%)
Frame = +3
Query: 633 PYRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAW 812
P +QE F+LSS++ +HA LVN+ W FGGNERSQRFIERCI+ FP+ CLLGPEGTP+ W
Sbjct: 160 PKAINQEMFKLSSMDVTHAHLVNKFWHFGGNERSQRFIERCIQTFPTCCLLGPEGTPVCW 219
Query: 813 SLMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQ 911
LMDQTGEMRMAGT EYR GLVTYVI+SH+Q
Sbjct: 220 DLMDQTGEMRMAGTLPEYRLHGLVTYVIYSHAQ 252
Score = 72.0 bits (175), Expect(2) = 4e-50
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVPL 1042
L KLGFP YSHVD N+ MQKMS+TL H+ +P SWNQWNCVPL
Sbjct: 254 LGKLGFPVYSHVDYSNEAMQKMSYTLQHVPIPRSWNQWNCVPL 296
>ref|NP_005829.3| glycine N-acyltransferase isoform b [Homo sapiens].
Length = 163
Score = 219 bits (558), Expect = 3e-57
Identities = 109/153 (71%), Positives = 118/153 (77%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M LQGAQMLQMLE SLRKSLP SLKVYGTVFH+N GNPF LKA+VDKWPDFNTVV+ PQ
Sbjct: 2 MLPLQGAQMLQMLEKSLRKSLPASLKVYGTVFHINHGNPFNLKAVVDKWPDFNTVVVCPQ 61
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
EQ+MTDDLDHYTNTY IYSKD +NC+EFLG PE+INWK NE IQ LAA
Sbjct: 62 EQDMTDDLDHYTNTYQIYSKDPQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAI 121
Query: 535 KSFNVQQTENILYMTLETIKELAPSLLDEKNLS 633
KSF V+QT+ ILYM ET KEL P LL K LS
Sbjct: 122 KSFKVKQTQRILYMAAETAKELTPFLLKSKILS 154
>ref|NP_659453.3| glycine N-acyltransferase-like protein 2 [Homo sapiens].
Length = 294
Score = 128 bits (321), Expect(3) = 1e-50
Identities = 60/134 (44%), Positives = 84/134 (62%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M +L +Q LQ+L SL KS+P S+KVYG +F++ NPF ++ LVD WPD+ V+ RPQ
Sbjct: 1 MLVLHNSQKLQILYKSLEKSIPESIKVYGAIFNIKDKNPFNMEVLVDAWPDYQIVITRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
+QEM DD DHYTNTYHI++K EE L VI+W+ +E I+K+A +
Sbjct: 61 KQEMKDDQDHYTNTYHIFTKAPDKLEEVLSYSNVISWEQTLQIQGCQEGLDEAIRKVATS 120
Query: 535 KSFNVQQTENILYM 576
KS V + IL++
Sbjct: 121 KSVQVDYMKTILFI 134
Score = 77.0 bits (188), Expect(3) = 1e-50
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +3
Query: 672 LEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEMRMAG 851
L+ SHA LVN+ W FG NERS ++IERC+++F +LGPEG ++W +M+Q+ E+RM
Sbjct: 168 LDASHAGLVNEHWAFGKNERSLKYIERCLQDFLGFGVLGPEGQLVSWIVMEQSCELRMGY 227
Query: 852 TKLEYRAQG 878
T +YR QG
Sbjct: 228 TVPKYRHQG 236
Score = 34.7 bits (78), Expect(3) = 1e-50
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
L++ P Y HV N+ + + L PC W+QW C P
Sbjct: 249 LSQKEIPFYFHVADNNEKSLQALNNLGFKICPCGWHQWKCTP 290
>ref|NP_001207425.1| glycine N-acyltransferase-like protein 1 isoform 2 [Homo sapiens].
Length = 302
Score = 127 bits (318), Expect(3) = 7e-49
Identities = 62/145 (42%), Positives = 89/145 (61%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M LL + L L SL +S+P SLKVYG+V+H+N GNPF ++ LVD WP++ V+IRPQ
Sbjct: 1 MILLNNSHKLLALYKSLARSIPESLKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
+QEMTDD+D YTN Y ++SK+ + EE L E++NWK E I+ +
Sbjct: 61 KQEMTDDMDSYTNVYRMFSKEPQKSEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFS 120
Query: 535 KSFNVQQTENILYMTLETIKELAPS 609
KS V+ + +L +T + +K A S
Sbjct: 121 KSVKVEHSRALLLVTEDILKLNASS 145
Score = 78.2 bits (191), Expect(3) = 7e-49
Identities = 34/93 (36%), Positives = 58/93 (62%)
Frame = +3
Query: 636 YRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWS 815
+ + F+ + L+ S++ LVN W+ G NERS +I+RCI + P+ C+LGPEG P++W
Sbjct: 162 FESETPNFKYAQLDVSYSGLVNDNWKRGKNERSLHYIKRCIEDLPAACMLGPEGVPVSWV 221
Query: 816 LMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQF 914
MD + E+ MA + +YR G + V+ + ++
Sbjct: 222 TMDPSCEVGMAYSMEKYRRTGNMARVMVRYMKY 254
Score = 28.9 bits (63), Expect(3) = 7e-49
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
L + P Y V ++N+ ++ C W+QW C P
Sbjct: 255 LRQKNIPFYISVLEENEDSRRFVGQFGFFEASCEWHQWTCYP 296
>ref|NP_001207423.1| glycine N-acyltransferase-like protein 1 isoform 2 [Homo sapiens].
Length = 302
Score = 127 bits (318), Expect(3) = 7e-49
Identities = 62/145 (42%), Positives = 89/145 (61%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M LL + L L SL +S+P SLKVYG+V+H+N GNPF ++ LVD WP++ V+IRPQ
Sbjct: 1 MILLNNSHKLLALYKSLARSIPESLKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
+QEMTDD+D YTN Y ++SK+ + EE L E++NWK E I+ +
Sbjct: 61 KQEMTDDMDSYTNVYRMFSKEPQKSEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFS 120
Query: 535 KSFNVQQTENILYMTLETIKELAPS 609
KS V+ + +L +T + +K A S
Sbjct: 121 KSVKVEHSRALLLVTEDILKLNASS 145
Score = 78.2 bits (191), Expect(3) = 7e-49
Identities = 34/93 (36%), Positives = 58/93 (62%)
Frame = +3
Query: 636 YRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWS 815
+ + F+ + L+ S++ LVN W+ G NERS +I+RCI + P+ C+LGPEG P++W
Sbjct: 162 FESETPNFKYAQLDVSYSGLVNDNWKRGKNERSLHYIKRCIEDLPAACMLGPEGVPVSWV 221
Query: 816 LMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQF 914
MD + E+ MA + +YR G + V+ + ++
Sbjct: 222 TMDPSCEVGMAYSMEKYRRTGNMARVMVRYMKY 254
Score = 28.9 bits (63), Expect(3) = 7e-49
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
L + P Y V ++N+ ++ C W+QW C P
Sbjct: 255 LRQKNIPFYISVLEENEDSRRFVGQFGFFEASCEWHQWTCYP 296
>ref|NP_542392.2| glycine N-acyltransferase-like protein 1 isoform 1 [Homo sapiens].
Length = 333
Score = 111 bits (277), Expect(3) = 4e-44
Identities = 52/121 (42%), Positives = 76/121 (62%)
Frame = +1
Query: 247 LKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDLDHYTNTYHIYSKDLKN 426
LKVYG+V+H+N GNPF ++ LVD WP++ V+IRPQ+QEMTDD+D YTN Y ++SK+ +
Sbjct: 56 LKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQKQEMTDDMDSYTNVYRMFSKEPQK 115
Query: 427 CEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAATKSFNVQQTENILYMTLETIKELAP 606
EE L E++NWK E I+ +KS V+ + +L +T + +K A
Sbjct: 116 SEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFSKSVKVEHSRALLLVTEDILKLNAS 175
Query: 607 S 609
S
Sbjct: 176 S 176
Score = 78.2 bits (191), Expect(3) = 4e-44
Identities = 34/93 (36%), Positives = 58/93 (62%)
Frame = +3
Query: 636 YRCDQEQFQLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWS 815
+ + F+ + L+ S++ LVN W+ G NERS +I+RCI + P+ C+LGPEG P++W
Sbjct: 193 FESETPNFKYAQLDVSYSGLVNDNWKRGKNERSLHYIKRCIEDLPAACMLGPEGVPVSWV 252
Query: 816 LMDQTGEMRMAGTKLEYRAQGLVTYVIFSHSQF 914
MD + E+ MA + +YR G + V+ + ++
Sbjct: 253 TMDPSCEVGMAYSMEKYRRTGNMARVMVRYMKY 285
Score = 28.9 bits (63), Expect(3) = 4e-44
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 914 LTKLGFPSYSHVDKKNKIMQKMSHTLNHLRMPCSWNQWNCVP 1039
L + P Y V ++N+ ++ C W+QW C P
Sbjct: 286 LRQKNIPFYISVLEENEDSRRFVGQFGFFEASCEWHQWTCYP 327
>ref|NP_001010904.1| glycine N-acyltransferase-like protein 3 [Homo sapiens].
Length = 288
Score = 99.4 bits (246), Expect(2) = 9e-33
Identities = 47/128 (36%), Positives = 73/128 (57%)
Frame = +1
Query: 175 MFLLQGAQMLQMLENSLRKSLPTSLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVIRPQ 354
M +L + L +LE L+ P SLKVYG V ++N+GNPF+ + ++D WPDF V+ R Q
Sbjct: 1 MLVLNCSTKLLILEKMLKSCFPESLKVYGAVMNINRGNPFQKEVVLDSWPDFKAVITRRQ 60
Query: 355 EQEMTDDLDHYTNTYHIYSKDLKNCEEFLGLPEVINWKXXXXXXXXXXXXNEVIQKLAAT 534
+ TD+LDHYTN Y ++ KD++ + L +V NW +V + +A +
Sbjct: 61 REAETDNLDHYTNAYAVFYKDVRAYRQLLEECDVFNWDQVFQIQGLQSELYDVSKAVANS 120
Query: 535 KSFNVQQT 558
K N++ T
Sbjct: 121 KQLNIKLT 128
Score = 60.1 bits (144), Expect(2) = 9e-33
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +3
Query: 660 QLSSLEPSHAALVNQLWQFGGNERSQRFIERCIRNFPSVCLLGPEGTPIAWSLMDQTGEM 839
+L+ L ++A L+N+ W GGNE+ R+I I FPSVC+ +G P++WS+ DQ M
Sbjct: 153 RLTYLSVANADLLNRTWSRGGNEQCLRYIANLISCFPSVCVRDEKGNPVSWSITDQFATM 212
Query: 840 RMAGTKLEYRAQG 878
T E+R +G
Sbjct: 213 CHGYTLPEHRRKG 225
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,662,737
Number of extensions: 1069656
Number of successful extensions: 2982
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2982
Number of HSP's successfully gapped: 18
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012836
(1060 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 799 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 799 bits (403), Expect = 0.0
Identities = 416/419 (99%), Gaps = 1/419 (0%)
Strand = Plus / Plus
Query: 643 gtgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993061 gtgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatc 11993120
Query: 703 aattatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccgga 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993121 aattatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccgga 11993180
Query: 763 acttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993181 acttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgg 11993240
Query: 823 accagacaggagagatgcggatggcaggcaccaaacttgagtaccgggcccagggcctcg 882
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11993241 accagacaggagagatgcggatggcaggcaccaagcttgagtaccgggcccagggcctcg 11993300
Query: 883 tcacctacgtcatcttttcccattccca-gttctgaccaaactcggtttcccctcctatt 941
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11993301 tcacctacgtcatcttttcccattcccaggttctgaccaaactcggtttcccctcctatt 11993360
Query: 942 ctcacgtagacaagaaaaacaaaattatgcagaagatgagtcacactctgaatcaccttc 1001
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993361 ctcacgtagacaagagaaacaaaattatgcagaagatgagtcacactctgaatcaccttc 11993420
Query: 1002 gcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaaccc 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11993421 gcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaaccc 11993479
Score = 799 bits (403), Expect = 0.0
Identities = 416/419 (99%), Gaps = 1/419 (0%)
Strand = Plus / Minus
Query: 643 gtgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997434 gtgaccaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatc 11997375
Query: 703 aattatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccgga 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997374 aattatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccgga 11997315
Query: 763 acttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997314 acttcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatgg 11997255
Query: 823 accagacaggagagatgcggatggcaggcaccaaacttgagtaccgggcccagggcctcg 882
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11997254 accagacaggagagatgcggatggcaggcaccaagcttgagtaccgggcccagggcctcg 11997195
Query: 883 tcacctacgtcatcttttcccattccca-gttctgaccaaactcggtttcccctcctatt 941
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11997194 tcacctacgtcatcttttcccattcccaggttctgaccaaactcggtttcccctcctatt 11997135
Query: 942 ctcacgtagacaagaaaaacaaaattatgcagaagatgagtcacactctgaatcaccttc 1001
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997134 ctcacgtagacaagagaaacaaaattatgcagaagatgagtcacactctgaatcaccttc 11997075
Query: 1002 gcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaaccc 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997074 gcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccctgaaccc 11997016
Score = 301 bits (152), Expect = 4e-79
Identities = 155/156 (99%)
Strand = Plus / Plus
Query: 488 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccactaaatccttcaacg 547
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11992474 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccgctaaatccttcaacg 11992533
Query: 548 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11992534 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 11992593
Query: 608 ccctgctggatgaaaagaacttgtcccttaccgatg 643
||||||||||||||||||||||||||||||||||||
Sbjct: 11992594 ccctgctggatgaaaagaacttgtcccttaccgatg 11992629
Score = 301 bits (152), Expect = 4e-79
Identities = 155/156 (99%)
Strand = Plus / Minus
Query: 488 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccactaaatccttcaacg 547
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11998021 gttctcagtccagcctgaatgaggtaatacaaaagcttgcagccgctaaatccttcaacg 11997962
Query: 548 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11997961 tccagcagacagaaaacattctctacatgacgcttgagacaataaaggaactggctcctt 11997902
Query: 608 ccctgctggatgaaaagaacttgtcccttaccgatg 643
||||||||||||||||||||||||||||||||||||
Sbjct: 11997901 ccctgctggatgaaaagaacttgtcccttaccgatg 11997866
Score = 287 bits (145), Expect = 6e-75
Identities = 151/153 (98%)
Strand = Plus / Plus
Query: 1 cacattgcaaacctcagcttggcatgaagaaaacagagctcagtgcactcttccagaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12081585 cacattgcaaacctcagcttggcatgaagaaaacagagctcagtgcactctgccagaccc 12081644
Query: 61 tgctgaacagactgcaccagagggaaatttccaactcgagaggttgctcctcatcatttg 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12081645 tgctgaacagactgcaccagagggaaatttccgactcgagaggttgctcctcatcatttg 12081704
Query: 121 ttcccgccaagctttggtgtgaagactgctttc 153
|||||||||||||||||||||||||||||||||
Sbjct: 12081705 ttcccgccaagctttggtgtgaagactgctttc 12081737
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 358 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11990910 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 11990969
Query: 418 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11990970 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 11991029
Query: 478 cagatccaaagt 489
||||||||||||
Sbjct: 11991030 cagatccaaagt 11991041
Score = 254 bits (128), Expect = 9e-65
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 358 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11999649 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 11999590
Query: 418 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 477
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11999589 ctgaagaactgtgaggaattccttggcttaccataagtcatcaactggaaacagcatttg 11999530
Query: 478 cagatccaaagt 489
||||||||||||
Sbjct: 11999529 cagatccaaagt 11999518
Score = 226 bits (114), Expect = 2e-56
Identities = 123/126 (97%)
Strand = Plus / Minus
Query: 935 tcctattctcacgtagacaagaaaaacaaaattatgcagaagatgagtcacactctgaat 994
|||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 11996385 tcctattctctcgtagacaagagagacaaaattatgcagaagatgagtcacactctgaat 11996326
Query: 995 caccttcgcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccct 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11996325 caccttcgcatgccctgtagctggaatcagtggaactgtgtgcctctgtgaagcagccct 11996266
Query: 1055 gaaccc 1060
||||||
Sbjct: 11996265 gaaccc 11996260
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 251 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11988012 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 11988071
Query: 311 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 361
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11988072 tggacaagtggcctgattttaacacagtggttattcgccctcaggagcagg 11988122
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 251 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12002553 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 12002494
Query: 311 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 361
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12002493 tggacaagtggcctgattttaacacagtggttattcgccctcaggagcagg 12002443
Score = 196 bits (99), Expect = 2e-47
Identities = 108/111 (97%)
Strand = Plus / Plus
Query: 251 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 310
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12021030 aggtttatggcaccgtcttccacatgaaccaaggaaaccccttcaagctaaaggccttgg 12021089
Query: 311 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 361
|||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 12021090 tggacaagtggcctgattttaatacagtggttattcgccctcaggagcagg 12021140
Score = 196 bits (99), Expect = 2e-47
Identities = 108/111 (97%)
Strand = Plus / Plus
Query: 251 aggtttatggcaccgtcttccacatgaaccagggaaaccccttcaagctaaaggccttgg 310
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12064723 aggtttatggcaccgtcttccacatgaaccaaggaaaccccttcaagctaaaggccttgg 12064782
Query: 311 tggacaagtggcctgattttaacacagtggttattcgccctcaagagcagg 361
|||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 12064783 tggacaagtggcctgattttaatacagtggttattcgccctcaggagcagg 12064833
Score = 184 bits (93), Expect = 7e-44
Identities = 174/201 (86%)
Strand = Plus / Plus
Query: 646 accaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatcaat 705
|||||||| ||||||| |||||||| |||| | |||||||||||||||||||| | |
Sbjct: 12070049 accaagagttgtttcaagtctcatccatggatgttacccacgctgccttggtgaataagt 12070108
Query: 706 tatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaact 765
| ||||| || |||||||| |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 12070109 tctggcattttggtggcaacgagaggagccagagattcattgagcgatgtatccgcaact 12070168
Query: 766 tcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatggacc 825
| | |||| ||||| |||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct: 12070169 ttctctccatctgcttgctggggcctgagggcacccctatatcttggtccctgatggacc 12070228
Query: 826 agacaggagagatgcggatgg 846
||||||||||||| |||||||
Sbjct: 12070229 agacaggagagatacggatgg 12070249
Score = 182 bits (92), Expect = 3e-43
Identities = 170/196 (86%)
Strand = Plus / Plus
Query: 660 caactctcatccctggaaccttcccacgctgccttggtgaatcaattatggcaattcggt 719
||||| ||||||||||| |||||||||||||| ||||||||| ||| ||| | || |||
Sbjct: 12030196 caactgtcatccctggatccttcccacgctgctttggtgaatacattctggtattttggt 12030255
Query: 720 ggcaatgagaggagccagagattcatcgagcgctgcatccggaacttcccctccgtctgc 779
||||||||||||||||||||||||||||||||||| ||| || ||||||| | |||
Sbjct: 12030256 ggcaatgagaggagccagagattcatcgagcgctgtatcaagaccttccccaactggtgc 12030315
Query: 780 ctgctagggcctgaggggaccccgatagcttggtccctgatggaccagacaggagagatg 839
||||| ||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct: 12030316 ctgctggggcctgaggggacccccgtgtcctgggtcctgatggaccagacaggagagatg 12030375
Query: 840 cggatggcaggcacca 855
||||||||||||||||
Sbjct: 12030376 cggatggcaggcacca 12030391
Score = 182 bits (92), Expect = 3e-43
Identities = 170/196 (86%)
Strand = Plus / Plus
Query: 660 caactctcatccctggaaccttcccacgctgccttggtgaatcaattatggcaattcggt 719
||||| ||||||||||| |||||||||||||| ||||||||| ||| ||| | || |||
Sbjct: 12219355 caactgtcatccctggatccttcccacgctgctttggtgaatacattctggtattttggt 12219414
Query: 720 ggcaatgagaggagccagagattcatcgagcgctgcatccggaacttcccctccgtctgc 779
||||||||||||||||||||||||||||||||||| ||| || ||||||| | |||
Sbjct: 12219415 ggcaatgagaggagccagagattcatcgagcgctgtatcaagaccttccccaactggtgc 12219474
Query: 780 ctgctagggcctgaggggaccccgatagcttggtccctgatggaccagacaggagagatg 839
||||| ||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct: 12219475 ctgctggggcctgaggggacccccgtgtcctgggtcctgatggaccagacaggagagatg 12219534
Query: 840 cggatggcaggcacca 855
||||||||||||||||
Sbjct: 12219535 cggatggcaggcacca 12219550
Score = 174 bits (88), Expect = 6e-41
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 155 aggctaagacatctcccacaatgttcctattgcaaggtgcccagatgctgcagatgctgg 214
|||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 11982288 aggctaaggcatctcccacgatgttcctgttgcaaggtgcccagatgctgcagatgctgg 11982347
Query: 215 agaattccttgaggaagagccttcctacatccttgaaggt 254
||||||||||||||||||||||||||||||||||||||||
Sbjct: 11982348 agaattccttgaggaagagccttcctacatccttgaaggt 11982387
Score = 174 bits (88), Expect = 6e-41
Identities = 97/100 (97%)
Strand = Plus / Minus
Query: 155 aggctaagacatctcccacaatgttcctattgcaaggtgcccagatgctgcagatgctgg 214
|||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 12008298 aggctaaggcatctcccacgatgttcctgttgcaaggtgcccagatgctgcagatgctgg 12008239
Query: 215 agaattccttgaggaagagccttcctacatccttgaaggt 254
||||||||||||||||||||||||||||||||||||||||
Sbjct: 12008238 agaattccttgaggaagagccttcctacatccttgaaggt 12008199
Score = 170 bits (86), Expect = 1e-39
Identities = 164/190 (86%)
Strand = Plus / Plus
Query: 646 accaagagcagtttcaactctcatccctggaaccttcccacgctgccttggtgaatcaat 705
|||||||| ||||||| |||||||| |||| | |||||||||||||||||||| | |
Sbjct: 11970518 accaagagatgtttcaagtctcatccatggatgttacccacgctgccttggtgaataagt 11970577
Query: 706 tatggcaattcggtggcaatgagaggagccagagattcatcgagcgctgcatccggaact 765
| ||||| || |||||||| |||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 11970578 tctggcattttggtggcaacgagaggagccagagattcattgagcgatgtatccgcaact 11970637
Query: 766 tcccctccgtctgcctgctagggcctgaggggaccccgatagcttggtccctgatggacc 825
| | |||| ||||| |||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct: 11970638 ttctctccatctgcttgctggggcctgagggcacccctatatcttggtccctgatggacc 11970697
Query: 826 agacaggaga 835
||||||||||
Sbjct: 11970698 agacaggaga 11970707
Score = 135 bits (68), Expect = 5e-29
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 358 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 417
|||||||||||||| || || ||||||||||||||||| || || ||||||||||||||
Sbjct: 12025709 caggagatgacagatgaactcgatcactacaccaatacttatcaagtctactccaaggac 12025768
Query: 418 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 477
| ||||| ||| | |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 12025769 cctaagaagtgtcaagaattccttggcttgccagaagtcatcaactggaaacaacacttg 12025828
Query: 478 cagatccaaagt 489
||||| ||||||
Sbjct: 12025829 cagattcaaagt 12025840
Score = 135 bits (68), Expect = 5e-29
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 358 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 417
|||||||||||||| || || ||||||||||||||||| || || ||||||||||||||
Sbjct: 12214871 caggagatgacagatgaactcgatcactacaccaatacttatcaagtctactccaaggac 12214930
Query: 418 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 477
| ||||| ||| | |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 12214931 cctaagaagtgtcaagaattccttggcttgccagaagtcatcaactggaaacaacacttg 12214990
Query: 478 cagatccaaagt 489
||||| ||||||
Sbjct: 12214991 cagattcaaagt 12215002
Score = 111 bits (56), Expect = 8e-22
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 358 caggagatgacagacgaccttgatcactacaccaatacctaccacatctactccaaggac 417
|||||||||||||| ||| |||||||| |||||||||||||||| ||||| || |||||
Sbjct: 12066664 caggagatgacagatgactttgatcaccacaccaatacctaccaaatctattctaaggat 12066723
Query: 418 ctgaagaactgtgaggaattccttggcttaccagaagtcatcaactggaaacagcatttg 477
|| ||||||||| | ||| |||| || | |||| |||||||||||||| |||||||||
Sbjct: 12066724 ctcaagaactgtcacgaagcccttagcacatcagatgtcatcaactggaagcagcatttg 12066783
Query: 478 cagatcca 485
||||||||
Sbjct: 12066784 cagatcca 12066791
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,550,361
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 23
Length of query: 1060
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1039
Effective length of database: 2,808,413,156
Effective search space: 2917941269084
Effective search space used: 2917941269084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)