BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012837
(1359 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis l... 641 0.0
Alignment gi|NP_001006952.1| collagen alpha-1(II) chain [Canis lupus fami... 391 e-109
Alignment gi|NP_001003090.1| collagen alpha-1(I) chain precursor [Canis l... 373 e-104
Alignment gi|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) cha... 331 9e-91
Alignment gi|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) cha... 331 9e-91
Alignment gi|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) cha... 331 9e-91
Alignment gi|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) cha... 331 9e-91
Alignment gi|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) cha... 331 9e-91
Alignment gi|XP_535997.2| PREDICTED: similar to Collagen alpha 1(III) cha... 302 4e-82
Alignment gi|XP_535998.2| PREDICTED: similar to Collagen alpha 2(V) chain... 300 1e-81
>ref|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis lupus familiaris].
Length = 1366
Score = 641 bits (1654), Expect = 0.0
Identities = 323/438 (73%), Positives = 330/438 (75%), Gaps = 2/438 (0%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PGVNGAPGEAGRDGNPG+DGPPGRDGQAGHKGER K
Sbjct: 915 PGVNGAPGEAGRDGNPGNDGPPGRDGQAGHKGERGYPGNIGPVGAVGAPGPHGPVGPTGK 974
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
HGNRGE QGIRG+KGEPG+KGPRGLPGLKGHNGLQGLPGL
Sbjct: 975 HGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGL 1034
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
AG HGDQ KDGRTGQPG VGPAGIR
Sbjct: 1035 AGQHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGP 1094
Query: 545 XXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEG 724
YDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEG
Sbjct: 1095 PGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEG 1154
Query: 725 SRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAK 904
SRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAK
Sbjct: 1155 SRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAK 1214
Query: 905 NWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKN 1084
NWYRNSKVKKH+WLGETINGGTQFEYN+EGVTTKEMATQLAFMRLLANHASQNITYHCKN
Sbjct: 1215 NWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKN 1274
Query: 1085 SIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGEKH--HFDIN 1258
SIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT K + N
Sbjct: 1275 SIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTN 1334
Query: 1259 K*PSRLPILDIAPLDIGE 1312
K PSRLPILDIAPLDIG+
Sbjct: 1335 K-PSRLPILDIAPLDIGD 1351
Score = 62.0 bits (149), Expect = 1e-09
Identities = 51/174 (29%), Positives = 58/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGA---------PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXX 154
NPG NG PG AG G PG G PG G AG G R
Sbjct: 299 NPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGIVGEPGPA------- 351
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G++GE +G RG GE G GP G PGL+G
Sbjct: 352 -----------GSKGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRG 400
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +GLPG G G GR G+PG +GP G
Sbjct: 401 SPGSRGLPGADGPAG---VMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRG 451
Score = 57.8 bits (138), Expect = 2e-08
Identities = 48/168 (28%), Positives = 52/168 (30%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDG---PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AGR G PG G PPG G AG
Sbjct: 783 PGATGFPGAAGRTGPPGPSGITGPPGPPGAAG---------------------------- 814
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
K G RG G +G GEPG GP PG G GL G
Sbjct: 815 --KEGLRGPRGDQGPVGRTGETGASGPPGFTGEKGPSGEPGTAGP---PGTPGPQGLLGA 869
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
PG+ G G + G G PGAVG G+
Sbjct: 870 PGILGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGAPGV 917
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/164 (27%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG G G G G PG+ G AG +G K
Sbjct: 102 PGASGAPGPQGFQGPAGEPGEPGQTGPAGARG------------PPGPPGKAGEDGHPGK 149
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G +G +G PG G G G++GHNGL GL G
Sbjct: 150 PGRPGERGVV------------------GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQ 191
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + GR G PG G G
Sbjct: 192 PGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 235
Score = 57.0 bits (136), Expect = 4e-08
Identities = 46/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG AG G+ G GP G G AG +G +
Sbjct: 678 PGAMGAPGPAGATGDRGEAGPAGPAGPAGPRG------------------------TPGE 713
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G +G +G KGE G GP G G G +G G PG
Sbjct: 714 RGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPIGSAGPSGPNGPPGP 773
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
AG GD G G PGA G G+R
Sbjct: 774 AGSRGDGGPPGATGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLR 819
Score = 56.2 bits (134), Expect = 7e-08
Identities = 46/172 (26%), Positives = 53/172 (30%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ GA G G DGN G+ GPPG G G KGE+ +
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGER 573
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G GE G G G G GP G G KG G+ G P
Sbjct: 574 GLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGSRGPSGPPGPDGNKGEPGVLGAPGTA 633
Query: 359 ------GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GL G G +DG G PGA+G G
Sbjct: 634 GASGPGGLPGERGAAGIPGGKGEKGETGLRGEIGNPGRDGARGAPGAMGAPG 685
Score = 54.3 bits (129), Expect = 3e-07
Identities = 45/164 (27%), Positives = 52/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GA G +G G+ G GPPG DG G G
Sbjct: 594 PGESGAAGPSGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGASGPGGLPGERGAAGIPGG 653
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G+RGE G PG G RG P G G PG
Sbjct: 654 KGEKGE---------------------TGLRGEIGNPGRDGARGAP------GAMGAPGP 686
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG GD+ + G G G GPAG
Sbjct: 687 AGATGDRGEAGPAGPAGPAGPRGTPGERGEVGPAGPNGFAGPAG 730
Score = 50.4 bits (119), Expect = 4e-06
Identities = 43/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPG G G PG +G PG+ G G GER
Sbjct: 190 GQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGA---------------R 234
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +GE G G+ GP G G +G GL G+ G
Sbjct: 235 GSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGNPGPAGPAGPRGEVGLPGVSGPV 294
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ G G PG VG AG
Sbjct: 295 GPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 337
>ref|NP_001006952.1| collagen alpha-1(II) chain [Canis lupus familiaris].
Length = 1487
Score = 391 bits (1005), Expect(2) = e-109
Identities = 212/449 (47%), Positives = 254/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 1025 PGLTGPSGEPGREGSPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGSPGSPGPAGPTGK 1084
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G+ G RGL G +G GLQGLPG
Sbjct: 1085 QGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGP 1144
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1204
Query: 545 XXXXXXXXXXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RADQ LR D EVDATLKSL
Sbjct: 1205 PGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAG--DLRQHDAEVDATLKSL 1262
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE++ +PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1263 NNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1322
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P ++P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+
Sbjct: 1323 CVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLS 1382
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYTVL DGC+K T
Sbjct: 1383 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHT 1442
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1443 GKWGKTMIEYRSQKTSRLPIIDIAPMDIG 1471
Score = 23.9 bits (50), Expect(2) = e-109
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+Q+ VD+GPVCF
Sbjct: 1474 EQEFGVDIGPVCF 1486
Score = 66.2 bits (160), Expect = 7e-11
Identities = 49/164 (29%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE G G PG GP G G AG +G+R
Sbjct: 458 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGAGPVGPPGERGAP----- 512
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 513 -GNRG------------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 66.2 bits (160), Expect = 7e-11
Identities = 51/170 (30%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGP 952
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE +GI G G+ G++G GLPG G G
Sbjct: 953 P------GEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 1006
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
QG PG +G G + GR G PGA GP G
Sbjct: 1007 QGAPGASGDRG---------PPGPVGPPGLTGPSGEPGREGSPGADGPPG 1047
Score = 62.0 bits (149), Expect = 1e-09
Identities = 47/166 (28%), Positives = 57/166 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G+DG G+ GPPG G AG +GE+
Sbjct: 623 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 682
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RGE+G PG++G G GL+G GL G PG
Sbjct: 683 QGVPGEAGAPGLV---------------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 727
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G G G PGA GP G++
Sbjct: 728 DGPKG------------------------ASGPAGPPGAQGPPGLQ 749
Score = 61.6 bits (148), Expect = 2e-09
Identities = 47/165 (28%), Positives = 54/165 (32%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPG G PG +G G G GPPG+ G G G+
Sbjct: 226 NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPG 285
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G+RG G GE G PG GPRGLPG +G G G G
Sbjct: 286 VKGHRG---YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAG 342
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+ G + G G PG VGPAG
Sbjct: 343 ARGNDG------------------------QPGPAGPPGPVGPAG 363
Score = 60.5 bits (145), Expect = 4e-09
Identities = 45/172 (26%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G AG G +
Sbjct: 709 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 768
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 769 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETG 828
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 880
Score = 59.7 bits (143), Expect = 6e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 576 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 635
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G PG +G G G PGL
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 695
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GPAG
Sbjct: 696 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAG 738
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/183 (25%), Positives = 52/183 (28%), Gaps = 18/183 (9%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GE G GNPG GPPG G G G
Sbjct: 146 PGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGP 205
Query: 185 ------------------HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP 310
GN GE G GE G+PG G
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGE 265
Query: 311 RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGP 490
RG PG +G G G PGL G G + G G PG +GP
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 491 AGI 499
G+
Sbjct: 326 RGL 328
Score = 56.2 bits (134), Expect = 7e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG++GA GEAG G G G PG +G G G R
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA--------- 343
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G+ G +GE G G +GP G G +G G G PG
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ G G PG G G
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG 447
Score = 55.5 bits (132), Expect = 1e-07
Identities = 47/175 (26%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G++
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK--------------------------- 857
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +G G PG +GP G+ G KG G QG PG
Sbjct: 858 GDAG---------------------APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKD------------GRTGQPGAVGPAG 496
G G KD GR G PG GPAG
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAG 951
Score = 54.3 bits (129), Expect = 3e-07
Identities = 46/168 (27%), Positives = 54/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG+ G G G G PG DGP G DG G +G
Sbjct: 943 DPGLQGPAGPPGEKGEPGDDGPSGPDGPPGPQG---------------LAGQRGIVGLPG 987
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP- 358
+ G RG +G G G PG GP G PG +G G G P
Sbjct: 988 QRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPSGEPGREGSPGADGPPG 1047
Query: 359 --GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G AG GD+ G G PG+ GPAG
Sbjct: 1048 RDGAAGVKGDR---------------GETGPVGAPGAPGSPGSPGPAG 1080
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 547 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE----------------------- 583
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+ G G G GEKG PG G RGLPG G G G
Sbjct: 584 -DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 642
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G++ + G+ G G G AG
Sbjct: 643 PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 690
>ref|NP_001003090.1| collagen alpha-1(I) chain precursor [Canis lupus familiaris].
Length = 1460
Score = 373 bits (957), Expect(2) = e-104
Identities = 196/449 (43%), Positives = 253/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PGE+GR+G+PG++G PGRDG G KG+R K
Sbjct: 999 PGLAGPPGESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1058
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G+RGE QG RG+KGE G++G RG+ G +G +GLQG PG
Sbjct: 1059 NGDRGETGPAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGP 1118
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G+Q KDG G PG +GP G R
Sbjct: 1119 PGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP 1178
Query: 545 XXXXXXXXXXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLN 691
+DF + G +YRAD +R +D EVD TLKSL+
Sbjct: 1179 PGPPGPPGPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLS 1235
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC
Sbjct: 1236 QQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETC 1295
Query: 872 IRAQPENIPAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
+ + KNWY +N K K+HVW GE++ G QFEY +G ++A QL F+RL++
Sbjct: 1296 VYPTQPQVAQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMS 1355
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+V DGC+ T
Sbjct: 1356 TEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHT 1415
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + SRLPI+D+APLD+G
Sbjct: 1416 GAWGKTVIEYKTTKTSRLPIIDVAPLDVG 1444
Score = 24.3 bits (51), Expect(2) = e-104
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
DQ+ +D+GPVCF
Sbjct: 1447 DQEFGMDIGPVCF 1459
Score = 65.5 bits (158), Expect = 1e-10
Identities = 47/165 (28%), Positives = 55/165 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA G AG+DG G+ GPPG G AG +GE+
Sbjct: 597 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ-------------------------- 630
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G QG+ G+ G PG G RG G G G+QG PG
Sbjct: 631 -GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 689
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
AG G G G PG G AG+
Sbjct: 690 AGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL 734
Score = 65.1 bits (157), Expect = 2e-10
Identities = 51/172 (29%), Positives = 58/172 (33%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G G PG G PG G G +G K
Sbjct: 186 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP---------------------PGPPGK 224
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGL 346
+G+ GE G GE+G PG +G RGLPG +KGH G
Sbjct: 225 NGDDGEAGKP------------------GRPGERGPPGPQGARGLPGTAGLPGMKGHRGF 266
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GL G G G G G+PGA GPAG R
Sbjct: 267 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 318
Score = 62.8 bits (151), Expect = 7e-10
Identities = 49/163 (30%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA GE G G PG GPPG G AG KG
Sbjct: 901 GGKGARGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP 960
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GE+G PG GP GL G G +G +G PG
Sbjct: 961 GQRGE---RGFPGLPGPSGEPGKQGPSGTSGERGPPGPMGPPGLAGPPGESGREGSPGAE 1017
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG VGPAG
Sbjct: 1018 GSPG---RDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1057
Score = 62.4 bits (150), Expect = 1e-09
Identities = 47/166 (28%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS G PG DG AG KG +
Sbjct: 471 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG---------E 521
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G G G+ G GP G PG +G G+ G PG
Sbjct: 522 AGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGP 581
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G+ + G G PG GPAG R
Sbjct: 582 KGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 627
Score = 61.6 bits (148), Expect = 2e-09
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NGAPG AG G PG+ GP G G +G G +
Sbjct: 394 GANGAPGIAGAPGFPGARGPSGPQGPSGPPGPKGNSGEPGAP------------------ 435
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN+G+ +G RG +GEPG G G PG +G G +G PG
Sbjct: 436 GNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGAD 495
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G G PGA G G
Sbjct: 496 GVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 538
Score = 61.6 bits (148), Expect = 2e-09
Identities = 45/164 (27%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G G GPPG GQ G G K
Sbjct: 531 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 590
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG G G GE G++GP G PG +G G G PG
Sbjct: 591 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE 650
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+Q + G G PG GP G
Sbjct: 651 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 694
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/174 (25%), Positives = 58/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGA------PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXX 163
+PG G PGEAG+ G G G G G +G +GER
Sbjct: 635 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 694
Query: 164 XXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQ---GIRGEKGEPGDKGPRGLPGLKG 334
G +G+ + G+ G KG+ GD GP+G G G
Sbjct: 695 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPG 754
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G++GL G G G G G+PG GPAG
Sbjct: 755 KDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAG 808
Score = 53.5 bits (127), Expect = 5e-07
Identities = 45/165 (27%), Positives = 49/165 (29%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G GAPG G G G GP G G G GE
Sbjct: 428 NSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG 487
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G G +G GE+G PG GP+G PG G G GLPG
Sbjct: 488 SRGFPG---------------ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPG 532
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG+TG PG G G
Sbjct: 533 AKGLTGS------------------PGSPGPDGKTGPPGPAGQDG 559
Score = 53.5 bits (127), Expect = 5e-07
Identities = 45/163 (27%), Positives = 50/163 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G +
Sbjct: 799 GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPK 858
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG G G G PG G G PG G+ G G PG A
Sbjct: 859 GARGS---------------------AGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA 897
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G PGA GPAG
Sbjct: 898 GKEGGKGARGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 940
Score = 52.8 bits (125), Expect = 8e-07
Identities = 43/171 (25%), Positives = 49/171 (28%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG NGAPG+ G G PG G PG G AG +G
Sbjct: 287 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 346
Query: 182 KHGN------RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG 343
G RG G G G+PG KG G PG+ G G
Sbjct: 347 AKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 406
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +G G G G G GP G
Sbjct: 407 FPGARGPSGPQGPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPG 457
Score = 52.8 bits (125), Expect = 8e-07
Identities = 43/164 (26%), Positives = 49/164 (29%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG+ G G G GP G G G +GE +
Sbjct: 768 PGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGE---------PGPPGPAGFAGPPGADGQ 818
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G G G PG KG RG G G G G G
Sbjct: 819 PGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGR 878
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G+PG VGP G
Sbjct: 879 VGPPGPSGNAGPPGPPGPAGKEGGKGARGETGPAGRPGEVGPPG 922
>ref|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
12 [Canis familiaris].
Length = 1466
Score = 331 bits (849), Expect = 9e-91
Identities = 185/449 (41%), Positives = 235/449 (52%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 1002 PGLAGTAGEPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1061
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1062 SGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGS 1121
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1122 PGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1181
Query: 545 XXXXXXXXXXXXXYDF------------GYEGDFYRADQPRSPPSLRPKDYEVDATLKSL 688
G + + P + E+ +LKS+
Sbjct: 1182 PGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSV 1241
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
+ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGET
Sbjct: 1242 SGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGET 1301
Query: 869 CIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL+
Sbjct: 1302 CLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLS 1361
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
+ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T
Sbjct: 1362 SRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHT 1421
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K F+ + RLPI+DIAP D+G
Sbjct: 1422 GEWGKTVFEYRTRKAVRLPIIDIAPYDVG 1450
Score = 65.5 bits (158), Expect = 1e-10
Identities = 46/163 (28%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G G+PGS G PG G G G+ +
Sbjct: 178 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRP 237
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G RG G G+KG G PGLKG NGL G G
Sbjct: 238 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAP 297
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 298 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 340
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/164 (28%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG+ G G PG++G PG G +G KG+
Sbjct: 894 PGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDA-------------------------- 927
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RG G PG GPRG PG +G G G PG
Sbjct: 928 -GQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGP 986
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+GH+G++ G G PG G G
Sbjct: 987 SGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGAPG 1030
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/173 (28%), Positives = 57/173 (32%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG GPPG +G G KGE
Sbjct: 365 SPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNG 424
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNG 343
G RG G G KGEPG +G R G+PG KG +G
Sbjct: 425 APGQRG------------------GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG 466
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PG G +G + G G+ G GPAG R
Sbjct: 467 KDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 519
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G++G G K
Sbjct: 534 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 593
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G PG +G GL G G
Sbjct: 594 NGERG---GPGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGP 650
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G +G G G PGA GP G R
Sbjct: 651 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 696
Score = 60.8 bits (146), Expect = 3e-09
Identities = 51/182 (28%), Positives = 62/182 (34%), Gaps = 18/182 (9%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G G PGE G G PG G PG++G+ G KGER
Sbjct: 793 GPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP--------------------- 831
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHN 340
G +GE QG++GE+G PG G RGLPG G+N
Sbjct: 832 ---GEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNN 888
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---------PGAVGPA 493
G G PG +G G G+ G+ PGA GP
Sbjct: 889 GNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPL 948
Query: 494 GI 499
GI
Sbjct: 949 GI 950
Score = 60.5 bits (145), Expect = 4e-09
Identities = 49/185 (26%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G GS G PG G +G GER
Sbjct: 651 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGA 710
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 711 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGP 770
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 771 PGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 830
Query: 482 VGPAG 496
G G
Sbjct: 831 PGEKG 835
Score = 60.1 bits (144), Expect = 5e-09
Identities = 49/170 (28%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG+ G G PG +G G G G +GE K
Sbjct: 420 PGTNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG------------K 467
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGL 355
G+ GE G GE+G PG +GP GLPG KG G +G
Sbjct: 468 DGSPGEPGANGLP---------------GAAGERGAPGFRGPAGANGLPGEKGPAGERGG 512
Query: 356 PGLAGHH---GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G+ DG+ G PG+ G +G
Sbjct: 513 PGPAGPRGAPGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 562
Score = 59.3 bits (142), Expect = 8e-09
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXX 145
+PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 197 SPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAG 256
Query: 146 XXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG 325
G GE G+ GE G PG GPRG PG
Sbjct: 257 MPGFPGMKGHRGFDGRNGE---------KGDTGAPGLKGENGLPGENGAPGPMGPRGAPG 307
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 308 ERGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 343
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/190 (27%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G G PG AG DG PG DGP PG GQ G KGE
Sbjct: 742 GDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGE---------------GGAP 786
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------ 304
G GE G +GE+G PG+K
Sbjct: 787 GLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGVAGPP 846
Query: 305 ------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRT 466
GP G G+KG G G PG AG G + KDG
Sbjct: 847 GGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPGKDGPP 906
Query: 467 GQPGAVGPAG 496
G PG G G
Sbjct: 907 GPPGNNGAPG 916
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/163 (27%), Positives = 48/163 (29%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG GPPG G AG G +
Sbjct: 826 GERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPP 885
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G G G G G KG G PG KG G QG PG
Sbjct: 886 GNNGNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAP 945
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G GP+G
Sbjct: 946 GPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGPSG 988
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXX 169
G GAPGE GR G PG+ DG G DGQ G G
Sbjct: 301 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 360
Query: 170 XXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ 349
G RGE QG G G PG G G PG KG G
Sbjct: 361 GSNGSPGQRGE------------------PGPQGHAGAPGPPGPPGSNGSPGGKGEMGPA 402
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+PG G G + K+G G+PG G G
Sbjct: 403 GIPGAPGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGAKGEPGPRGERG 451
Score = 52.8 bits (125), Expect = 8e-07
Identities = 47/170 (27%), Positives = 49/170 (28%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDG------NPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG NGAPG G G PG G PG G G G
Sbjct: 909 PGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGP 968
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE G G GE G GP+GLPGL G G
Sbjct: 969 RGSPGPQGVKGE------------------NGKPGPSGHNGERGPPGPQGLPGLAGTAGE 1010
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G G G PG VGPAG
Sbjct: 1011 PGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 1060
>ref|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
11 [Canis familiaris].
Length = 1450
Score = 331 bits (849), Expect = 9e-91
Identities = 185/449 (41%), Positives = 235/449 (52%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 986 PGLAGTAGEPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1045
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1046 SGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGS 1105
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1106 PGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1165
Query: 545 XXXXXXXXXXXXXYDF------------GYEGDFYRADQPRSPPSLRPKDYEVDATLKSL 688
G + + P + E+ +LKS+
Sbjct: 1166 PGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSV 1225
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
+ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGET
Sbjct: 1226 SGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGET 1285
Query: 869 CIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL+
Sbjct: 1286 CLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLS 1345
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
+ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T
Sbjct: 1346 SRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHT 1405
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K F+ + RLPI+DIAP D+G
Sbjct: 1406 GEWGKTVFEYRTRKAVRLPIIDIAPYDVG 1434
Score = 67.4 bits (163), Expect = 3e-11
Identities = 49/163 (30%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PG AG G PG GPPG GQAG G +
Sbjct: 168 GIGGYPGPAGPPGPPGYQGPPGEPGQAGPAGP------PGPPGAMGPSGPAGKDGESGRP 221
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G RG G G+KG G PGLKG NGL G G
Sbjct: 222 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAP 281
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 282 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 324
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/164 (28%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG+ G G PG++G PG G +G KG+
Sbjct: 878 PGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDA-------------------------- 911
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RG G PG GPRG PG +G G G PG
Sbjct: 912 -GQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGP 970
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+GH+G++ G G PG G G
Sbjct: 971 SGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGAPG 1014
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/173 (28%), Positives = 57/173 (32%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG GPPG +G G KGE
Sbjct: 349 SPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNG 408
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNG 343
G RG G G KGEPG +G R G+PG KG +G
Sbjct: 409 APGQRG------------------GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG 450
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PG G +G + G G+ G GPAG R
Sbjct: 451 KDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 503
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G++G G K
Sbjct: 518 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 577
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G PG +G GL G G
Sbjct: 578 NGERG---GPGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGP 634
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G +G G G PGA GP G R
Sbjct: 635 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 680
Score = 60.8 bits (146), Expect = 3e-09
Identities = 51/182 (28%), Positives = 62/182 (34%), Gaps = 18/182 (9%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G G PGE G G PG G PG++G+ G KGER
Sbjct: 777 GPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP--------------------- 815
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHN 340
G +GE QG++GE+G PG G RGLPG G+N
Sbjct: 816 ---GEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNN 872
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---------PGAVGPA 493
G G PG +G G G+ G+ PGA GP
Sbjct: 873 GNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPL 932
Query: 494 GI 499
GI
Sbjct: 933 GI 934
Score = 60.5 bits (145), Expect = 4e-09
Identities = 49/185 (26%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G GS G PG G +G GER
Sbjct: 635 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPG
Animal-Genome cDNA 20110601C-012837
Animal-Genome cDNA 20110601C-012837
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012837
(1359 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus]. 632 0.0
Alignment gi|NP_001001135.2| collagen alpha-1(II) chain isoform 1 [Bos ta... 391 e-109
Alignment gi|NP_001106695.1| collagen alpha-1(II) chain isoform 2 [Bos ta... 391 e-109
Alignment gi|NP_001029211.1| collagen alpha-1(I) chain precursor [Bos tau... 373 e-103
Alignment gi|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus]. 337 2e-92
Alignment gi|NP_001159981.1| collagen alpha-1(XI) chain [Bos taurus]. 180 2e-45
Alignment gi|XP_002691766.1| PREDICTED: collagen alpha-1(V) chain-like [B... 166 5e-41
Alignment gi|NP_001192553.1| collagen alpha-3(V) chain [Bos taurus]. 161 1e-39
Alignment gi|XP_002688885.1| PREDICTED: collagen, type V, alpha 3 [Bos ta... 161 1e-39
Alignment gi|NP_001039664.1| collagen alpha-2(XI) chain precursor [Bos ta... 133 3e-31
>ref|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus].
Length = 1364
Score = 632 bits (1631), Expect = 0.0
Identities = 318/438 (72%), Positives = 328/438 (74%), Gaps = 2/438 (0%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPGVNGAPGEAGRDGNPG+DGPPGRDGQ GHKGER
Sbjct: 912 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNAGPVGAAGAPGPQGPVGPVG 971
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
KHGNRGE QGIRG+KGEPGDKGPRGLPGLKGHNGLQGLPG
Sbjct: 972 KHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPG 1031
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXX 541
LAGHHGDQ KDGR GQPGAVGPAGIR
Sbjct: 1032 LAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKDGRIGQPGAVGPAGIRGSQGSQGPAGPPG 1091
Query: 542 XXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPE 721
Y+FG++GDFYRADQPRSP SLRPKDYEVDATLKSLNNQIETLLTPE
Sbjct: 1092 PPGPPGPPGPSGGGYEFGFDGDFYRADQPRSPTSLRPKDYEVDATLKSLNNQIETLLTPE 1151
Query: 722 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA 901
GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPE+IP
Sbjct: 1152 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPV 1211
Query: 902 KNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCK 1081
KNWYRNSK KKHVW+GETINGGTQFEYN+EGVTTKEMATQLAFMRLLANHASQNITYHCK
Sbjct: 1212 KNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCK 1271
Query: 1082 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGEKH--HFDI 1255
NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT +K +
Sbjct: 1272 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWQKTIIEYKT 1331
Query: 1256 NK*PSRLPILDIAPLDIG 1309
NK PSRLPILDIAPLDIG
Sbjct: 1332 NK-PSRLPILDIAPLDIG 1348
Score = 63.9 bits (154), Expect = 3e-10
Identities = 48/165 (29%), Positives = 56/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPG NG PG G G PG G PG G G G
Sbjct: 297 NPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGP---------VGAAGATGARGLVGEPG 347
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G++GE +G RG GE G GP G PGL+G+ G +GLPG
Sbjct: 348 PAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPG 407
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G GR G+PG +GP G
Sbjct: 408 ADGRAG---VMGPAGSRGATGPAGVRGPNGDSGRPGEPGLMGPRG 449
Score = 60.1 bits (144), Expect = 4e-09
Identities = 46/164 (28%), Positives = 55/164 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG G G PG G PG+ G AG +G K
Sbjct: 100 PGASGAPGPQGFQGPPGEPGEPGQTGPAGARG------------PPGPPGKAGEDGHPGK 147
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G +G +G PG G G G++GHNGL GL G
Sbjct: 148 PGRPGERGVV------------------GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQ 189
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + GR G PG G G
Sbjct: 190 PGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 233
Score = 57.0 bits (136), Expect = 4e-08
Identities = 46/172 (26%), Positives = 53/172 (30%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ GA G G DGN G+ GPPG G G KGE+ +
Sbjct: 512 GLAGARGAPGPDGNNGAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEAGKPGER 571
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G GE G G G G GP G G KG G+ G P
Sbjct: 572 GIPGEFGLPGPAGARGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAPGTA 631
Query: 359 ------GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GL G G +DG G PGA+G G
Sbjct: 632 GPSGPSGLPGERGAAGIPGGKGEKGETGLRGDIGSPGRDGARGAPGAIGAPG 683
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG AG +G+ G GP G G AG +G +
Sbjct: 676 PGAIGAPGPAGANGDRGEAGPAGPAGPAGPRGS------------------------PGE 711
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G +G +G KGE G GP G G G +G G PG
Sbjct: 712 RGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPSGPNGPPGP 771
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
AG GD G G PG G G+R
Sbjct: 772 AGSRGDGGPPGATGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR 817
Score = 55.8 bits (133), Expect = 8e-08
Identities = 46/167 (27%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDG---PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AGR G PG G PPG G AG +G R
Sbjct: 781 PGATGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRSGETGASGPPGF 840
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
+ G GE G+ G +GE G G G G G G+ G
Sbjct: 841 VGEKGPSGEPGTAGPPGTPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGP 900
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G+ GR GQPG G G
Sbjct: 901 PGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 947
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/163 (26%), Positives = 49/163 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA GE G G PG GP G G+AG KG
Sbjct: 479 GPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGLQGVQ 538
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE QG+ G G G+ G G G+ G GL G G
Sbjct: 539 GGKGE------------QGPAGPPGFQGLPGPAGTAGEAGKPGERGIPGEFGLPGPAGAR 586
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG G+PG VG G
Sbjct: 587 GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAPG 629
Score = 52.4 bits (124), Expect = 9e-07
Identities = 44/164 (26%), Positives = 52/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GA G G G+ G GPPG DG G G
Sbjct: 592 PGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGPSGPSGLPGERGAAGIPGG 651
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G+RG+ G PG G RG P G G PG
Sbjct: 652 KGEKGE---------------------TGLRGDIGSPGRDGARGAP------GAIGAPGP 684
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG +GD+ + G G G GPAG
Sbjct: 685 AGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 728
Score = 52.0 bits (123), Expect = 1e-06
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPG G G PG +G PG+ G G GER
Sbjct: 188 GQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGA---------------R 232
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +GE G G+ GP G G +G GL GL G
Sbjct: 233 GSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPV 292
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ G G PG VG AG
Sbjct: 293 GPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 335
>ref|NP_001001135.2| collagen alpha-1(II) chain isoform 1 [Bos taurus].
Length = 1487
Score = 391 bits (1005), Expect(2) = e-109
Identities = 212/449 (47%), Positives = 255/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 1025 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPIGK 1084
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G+ G RGL G +G GLQGLPG
Sbjct: 1085 QGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGP 1144
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1204
Query: 545 XXXXXXXXXXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RAD+ +LR D EVDATLKSL
Sbjct: 1205 PGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAG--NLRQHDAEVDATLKSL 1262
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE+L +PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1263 NNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1322
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P ++P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+
Sbjct: 1323 CVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLS 1382
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYTVL DGC+K T
Sbjct: 1383 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHT 1442
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1443 GKWGKTMIEYRSQKTSRLPIIDIAPMDIG 1471
Score = 23.9 bits (50), Expect(2) = e-109
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+Q+ VD+GPVCF
Sbjct: 1474 EQEFGVDIGPVCF 1486
Score = 66.2 bits (160), Expect = 6e-11
Identities = 49/164 (29%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE G G PG GP G G AG +G+R
Sbjct: 458 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGAGPAGPPGERGAP----- 512
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 513 -GNRG------------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 66.2 bits (160), Expect = 6e-11
Identities = 51/170 (30%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGP 952
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE +GI G G+ G++G GLPG G G
Sbjct: 953 P------GEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 1006
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
QG PG +G G + GR G PGA GP G
Sbjct: 1007 QGAPGASGDRG---------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Score = 61.6 bits (148), Expect = 2e-09
Identities = 47/165 (28%), Positives = 54/165 (32%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPG G PG +G G G GPPG+ G G G+
Sbjct: 226 NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPG 285
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G+RG G GE G PG GPRGLPG +G G G G
Sbjct: 286 VKGHRG---YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAG 342
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+ G + G G PG VGPAG
Sbjct: 343 ARGNDG------------------------QPGPAGPPGPVGPAG 363
Score = 60.8 bits (146), Expect = 3e-09
Identities = 47/166 (28%), Positives = 57/166 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G+DG G+ GPPG G AG +GE+
Sbjct: 623 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 682
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RGE+G PG++G G GL+G GL G PG
Sbjct: 683 QGVPGEAGAPGLV---------------GPRGERGFPGERGSPGSQGLQGARGLPGTPGT 727
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G G G PGA GP G++
Sbjct: 728 DGPKG------------------------AAGPAGPPGAQGPPGLQ 749
Score = 60.5 bits (145), Expect = 3e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 576 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 635
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G PG +G G G PGL
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 695
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GPAG
Sbjct: 696 GPRGERGFPGERGSPGSQGLQGARGLPGTPGTDGPKGAAGPAG 738
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/183 (25%), Positives = 52/183 (28%), Gaps = 18/183 (9%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GE G GNPG GPPG G G G
Sbjct: 146 PGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGP 205
Query: 185 ------------------HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP 310
GN GE G GE G+PG G
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGE 265
Query: 311 RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGP 490
RG PG +G G G PGL G G + G G PG +GP
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 491 AGI 499
G+
Sbjct: 326 RGL 328
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/172 (26%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G AG G +
Sbjct: 709 SPGSQGLQGARGLPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 768
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 769 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETG 828
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 880
Score = 55.8 bits (133), Expect = 8e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG++GA GEAG G G G PG +G G G R
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA--------- 343
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G+ G +GE G G +GP G G +G G G PG
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ G G PG G G
Sbjct: 404 AGAAGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG 447
Score = 55.5 bits (132), Expect = 1e-07
Identities = 47/175 (26%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G++
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK--------------------------- 857
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +G G PG +GP G+ G KG G QG PG
Sbjct: 858 GDAG---------------------APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKD------------GRTGQPGAVGPAG 496
G G KD GR G PG GPAG
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAG 951
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 547 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE----------------------- 583
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+ G G G GEKG PG G RGLPG G G G
Sbjct: 584 -DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 642
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G++ + G+ G G G AG
Sbjct: 643 PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 690
>ref|NP_001106695.1| collagen alpha-1(II) chain isoform 2 [Bos taurus].
Length = 1418
Score = 391 bits (1005), Expect(2) = e-109
Identities = 212/449 (47%), Positives = 255/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 956 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPIGK 1015
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G+ G RGL G +G GLQGLPG
Sbjct: 1016 QGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGP 1075
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1135
Query: 545 XXXXXXXXXXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RAD+ +LR D EVDATLKSL
Sbjct: 1136 PGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAG--NLRQHDAEVDATLKSL 1193
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE+L +PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1194 NNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1253
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P ++P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+
Sbjct: 1254 CVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLS 1313
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYTVL DGC+K T
Sbjct: 1314 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHT 1373
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1374 GKWGKTMIEYRSQKTSRLPIIDIAPMDIG 1402
Score = 23.9 bits (50), Expect(2) = e-109
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+Q+ VD+GPVCF
Sbjct: 1405 EQEFGVDIGPVCF 1417
Score = 66.2 bits (160), Expect = 6e-11
Identities = 49/164 (29%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE G G PG GP G G AG +G+R
Sbjct: 389 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGAGPAGPPGERGAP----- 443
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 444 -GNRG------------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 484
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 485 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Score = 66.2 bits (160), Expect = 6e-11
Identities = 51/170 (30%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGP 883
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE +GI G G+ G++G GLPG G G
Sbjct: 884 P------GEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 937
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
QG PG +G G + GR G PGA GP G
Sbjct: 938 QGAPGASGDRG---------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Score = 61.6 bits (148), Expect = 2e-09
Identities = 47/165 (28%), Positives = 54/165 (32%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPG G PG +G G G GPPG+ G G G+
Sbjct: 157 NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPG 216
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G+RG G GE G PG GPRGLPG +G G G G
Sbjct: 217 VKGHRG---YPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAG 273
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+ G + G G PG VGPAG
Sbjct: 274 ARGNDG------------------------QPGPAGPPGPVGPAG 294
Score = 60.8 bits (146), Expect = 3e-09
Identities = 47/166 (28%), Positives = 57/166 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G+DG G+ GPPG G AG +GE+
Sbjct: 554 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 613
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RGE+G PG++G G GL+G GL G PG
Sbjct: 614 QGVPGEAGAPGLV---------------GPRGERGFPGERGSPGSQGLQGARGLPGTPGT 658
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G G G PGA GP G++
Sbjct: 659 DGPKG------------------------AAGPAGPPGAQGPPGLQ 680
Score = 60.5 bits (145), Expect = 3e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 507 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 566
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G PG +G G G PGL
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 626
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GPAG
Sbjct: 627 GPRGERGFPGERGSPGSQGLQGARGLPGTPGTDGPKGAAGPAG 669
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/183 (25%), Positives = 52/183 (28%), Gaps = 18/183 (9%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GE G GNPG GPPG G G G
Sbjct: 77 PGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGP 136
Query: 185 ------------------HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP 310
GN GE G GE G+PG G
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGE 196
Query: 311 RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGP 490
RG PG +G G G PGL G G + G G PG +GP
Sbjct: 197 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 256
Query: 491 AGI 499
G+
Sbjct: 257 RGL 259
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/172 (26%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G AG G +
Sbjct: 640 SPGSQGLQGARGLPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 699
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 700 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETG 759
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 760 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 811
Score = 55.8 bits (133), Expect = 8e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG++GA GEAG G G G PG +G G G R
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA--------- 274
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G+ G +GE G G +GP G G +G G G PG
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 334
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ G G PG G G
Sbjct: 335 AGAAGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG 378
Score = 55.5 bits (132), Expect = 1e-07
Identities = 47/175 (26%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G++
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK--------------------------- 788
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +G G PG +GP G+ G KG G QG PG
Sbjct: 789 GDAG---------------------APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKD------------GRTGQPGAVGPAG 496
G G KD GR G PG GPAG
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAG 882
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 478 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE----------------------- 514
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+ G G G GEKG PG G RGLPG G G G
Sbjct: 515 -DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 573
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G++ + G+ G G G AG
Sbjct: 574 PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 621
>ref|NP_001029211.1| collagen alpha-1(I) chain precursor [Bos taurus].
Length = 1463
Score = 373 bits (958), Expect = e-103
Identities = 197/449 (43%), Positives = 252/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PGE+GR+G PG++G PGRDG G KG+R K
Sbjct: 1002 PGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1061
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G RG+ G +G +GLQG PG
Sbjct: 1062 SGDRGETGPAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGP 1121
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G+Q KDG G PG +GP G R
Sbjct: 1122 PGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGP 1181
Query: 545 XXXXXXXXXXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLN 691
YD + G +YRAD +R +D EVD TLKSL+
Sbjct: 1182 PGPPGPPGPPSGGYDLSFLPQPPQEKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLS 1238
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC
Sbjct: 1239 QQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETC 1298
Query: 872 IRAQPENIPAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
+ ++ KNWY +N K K+HVW GE++ GG QFEY +G ++A QL F+RL++
Sbjct: 1299 VYPTQPSVAQKNWYISKNPKEKRHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMS 1358
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+V DGC+ T
Sbjct: 1359 TEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHT 1418
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + SRLPI+D+APLD+G
Sbjct: 1419 GAWGKTVIEYKTTKTSRLPIIDVAPLDVG 1447
Score = 65.5 bits (158), Expect = 1e-10
Identities = 47/165 (28%), Positives = 55/165 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA G AG+DG G+ GPPG G AG +GE+
Sbjct: 600 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ-------------------------- 633
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G QG+ G+ G PG G RG G G G+QG PG
Sbjct: 634 -GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 692
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
AG G G G PG G AG+
Sbjct: 693 AGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL 737
Score = 65.1 bits (157), Expect = 1e-10
Identities = 51/172 (29%), Positives = 58/172 (33%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G G PG G PG G G +G K
Sbjct: 189 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP---------------------PGPPGK 227
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGL 346
+G+ GE G GE+G PG +G RGLPG +KGH G
Sbjct: 228 NGDDGEAGKP------------------GRPGERGPPGPQGARGLPGTAGLPGMKGHRGF 269
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GL G G G G G+PGA GPAG R
Sbjct: 270 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 321
Score = 61.6 bits (148), Expect = 2e-09
Identities = 47/166 (28%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS G PG DG AG KG +
Sbjct: 474 PGPAGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPG---------E 524
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G G G+ G GP G PG +G G+ G PG
Sbjct: 525 AGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGP 584
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G+ + G G PG GPAG R
Sbjct: 585 KGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 630
Score = 61.6 bits (148), Expect = 2e-09
Identities = 45/164 (27%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G G GPPG GQ G G K
Sbjct: 534 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 593
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG G G GE G++GP G PG +G G G PG
Sbjct: 594 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE 653
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+Q + G G PG GP G
Sbjct: 654 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 697
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/163 (29%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG GPPG G AG KG
Sbjct: 904 GSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLP 963
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GE+G PG GP GL G G +G +G PG
Sbjct: 964 GQRGE---RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE 1020
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG VGPAG
Sbjct: 1021 GSPG---RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1060
Score = 59.7 bits (143), Expect = 6e-09
Identities = 44/163 (26%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NGAPG AG G PG+ GP G G +G G +
Sbjct: 397 GANGAPGIAGAPGFPGARGPSGPQGPSGPPGPKGNSGEPGAP------------------ 438
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++G+ +G RG +GEPG G G PG +G G +G PG
Sbjct: 439 GSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLPGPPGERGGPGSRGFPGAD 498
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G G PGA G G
Sbjct: 499 GVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 541
Score = 55.8 bits (133), Expect = 8e-08
Identities = 44/174 (25%), Positives = 58/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGA------PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXX 163
+PG G PGEAG+ G G G G G +G +GER
Sbjct: 638 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 697
Query: 164 XXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQ---GIRGEKGEPGDKGPRGLPGLKG 334
G +G+ + G+ G KG+ GD GP+G G G
Sbjct: 698 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPG 757
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G++GL G G G G G+PG GPAG
Sbjct: 758 KDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAG 811
Score = 53.5 bits (127), Expect = 4e-07
Identities = 45/163 (27%), Positives = 50/163 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G +
Sbjct: 802 GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPK 861
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG G G G PG G G PG G+ G G PG A
Sbjct: 862 GARGS---------------------AGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA 900
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G PGA GPAG
Sbjct: 901 GKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAG 943
Score = 53.1 bits (126), Expect = 5e-07
Identities = 45/165 (27%), Positives = 49/165 (29%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G GAPG G G G GP G G G GE
Sbjct: 431 NSGEPGAPGSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLPGPPGERGGPG 490
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G G +G GE+G PG GP+G PG G G GLPG
Sbjct: 491 SRGFPG---------------ADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPG 535
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG+TG PG G G
Sbjct: 536 AKGLTGS------------------PGSPGPDGKTGPPGPAGQDG 562
Score = 52.8 bits (125), Expect = 7e-07
Identities = 43/171 (25%), Positives = 49/171 (28%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG NGAPG+ G G PG G PG G AG +G
Sbjct: 290 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 349
Query: 182 KHGN------RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG 343
G RG G G G+PG KG G PG+ G G
Sbjct: 350 AKGEGGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 409
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +G G G G G GP G
Sbjct: 410 FPGARGPSGPQGPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPTGIQGPPG 460
Score = 52.8 bits (125), Expect = 7e-07
Identities = 43/164 (26%), Positives = 49/164 (29%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG+ G G G GP G G G +GE +
Sbjct: 771 PGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGE---------PGPPGPAGFAGPPGADGQ 821
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G G G PG KG RG G G G G G
Sbjct: 822 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGR 881
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G+PG VGP G
Sbjct: 882 VGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPG 925
>ref|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus].
Length = 1466
Score = 337 bits (863), Expect = 2e-92
Identities = 196/453 (43%), Positives = 236/453 (52%), Gaps = 18/453 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1061 SGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGAMGIKGHRGFPGNPGAPGS 1120
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1121 PGPAGHQGAVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGH 1180
Query: 545 XXXXXXXXXXXXX------------YDFGYE--GDF--YRADQPRSPPSLRPKDYEVDAT 676
G E G F Y D+P + E+ +
Sbjct: 1181 PGQPGPPGPPGAPGPCCGAGGVAAIAGVGAEKAGGFAPYYGDEPID---FKINTDEIMTS 1237
Query: 677 LKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFS 856
LKS+N QIE+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKVYC+
Sbjct: 1238 LKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVYCNME 1297
Query: 857 TGETCIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFM 1033
TGETCI A P IP KNW+ +S KKHVW GE++ GG QF Y + + QLAF+
Sbjct: 1298 TGETCISASPLTIPQKNWWTDSGAEKKHVWFGESMEGGFQFSYGNPELPEDVLDVQLAFL 1357
Query: 1034 RLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGC 1213
RLL++ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC
Sbjct: 1358 RLLSSRASQNITYHCKNSIAYMDHASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGC 1417
Query: 1214 SKKTMNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
+K T K F + RLPI+DIAP DIG
Sbjct: 1418 TKHTGEWGKTVFQYQTRKAVRLPIVDIAPYDIG 1450
Score = 63.5 bits (153), Expect = 4e-10
Identities = 47/172 (27%), Positives = 56/172 (32%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G NG PGE G G+ G GP PGRDG G G R
Sbjct: 495 GANGLPGEKGPPGDRGGPGPAGPRGVAGEPGRDGLPGGPGLRGIPGSPGGPGSDGKPGPP 554
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN 340
+ G G G GE+G PG GP+G G G
Sbjct: 555 GSQGETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGET 614
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G QG PG G GD+ ++G+ G+PG G AG
Sbjct: 615 GPQGPPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAG 666
Score = 63.2 bits (152), Expect = 5e-10
Identities = 44/163 (26%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G G+PG+ G PG G G G+ +
Sbjct: 177 GPPGPPGPPGTSGHPGAPGAPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRP 236
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G RG G G+KG G PGLKG NG+ G G
Sbjct: 237 GRPGERGFPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGVPGENGAP 296
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 297 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 63.2 bits (152), Expect = 5e-10
Identities = 48/164 (29%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PG GPPG +G G KGE
Sbjct: 365 PGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEM-------------------------- 398
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G G RG GEPG G +G PG +G G G PG+
Sbjct: 399 -GPAGIPGAPGLIGARGPPGPPGTNGVPGQRGAAGEPGKNGAKGDPGPRGERGEAGSPGI 457
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ KDG G+PGA G G
Sbjct: 458 AGPKGED---------------------GKDGSPGEPGANGLPG 480
Score = 62.0 bits (149), Expect = 1e-09
Identities = 46/166 (27%), Positives = 52/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G+ G G K
Sbjct: 533 PGLRGIPGSPGGPGSDGKPGPPGSQGETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G PG +G GL G G
Sbjct: 593 NGERG---GPGGPGPQGPAGKNGETGPQGPPGPTGPSGDKGDTGPPGPQGLQGLPGTSGP 649
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G +G G G PGA GP G R
Sbjct: 650 PGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAGGPPGPR 695
Score = 59.7 bits (143), Expect = 6e-09
Identities = 50/181 (27%), Positives = 58/181 (32%), Gaps = 18/181 (9%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV+GAPG+ G G G GPPG GQ G KGE
Sbjct: 750 GVDGAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGVPGIAGP---------------R 794
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------------GPR 313
G GE G +GE+G PG+K GP
Sbjct: 795 GGPGERGEQGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGAAGPAGGSGPAGPP 854
Query: 314 GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPA 493
G G+KG G G PG AG G + KDG G PG+ G
Sbjct: 855 GPQGVKGERGSPGGPGAAGFPGGRGPPGPPGSNGNPGPPGSSGAPGKDGPPGPPGSNGAP 914
Query: 494 G 496
G
Sbjct: 915 G 915
Score = 59.3 bits (142), Expect = 8e-09
Identities = 49/176 (27%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXXX 148
PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 197 PGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPGERGFPGPPGMKGPAGM 256
Query: 149 XXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL 328
G GE G+ GE G PG GPRG PG
Sbjct: 257 PGFPGMKGHRGFDGRNGE---------KGETGAPGLKGENGVPGENGAPGPMGPRGAPGE 307
Query: 329 KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 308 RGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 342
Score = 58.9 bits (141), Expect = 1e-08
Identities = 50/197 (25%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G G+ G PG G +G GER
Sbjct: 650 PGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAGGPPGPRGGAGPPGPEGGKGA 709
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 710 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSSGVDGAPGKDGPRGPTGPIGP 769
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ--- 472
P G PG KG +G G+PG+AG G + G G+
Sbjct: 770 PGPAGQPGDKGESGAPGVPGIAGPRGGPGERGEQGPPGPAGFPGAPGQNGEPGAKGERGA 829
Query: 473 ---------PGAVGPAG 496
PGA GPAG
Sbjct: 830 PGEKGEGGPPGAAGPAG 846
Score = 58.5 bits (140), Expect = 1e-08
Identities = 47/179 (26%), Positives = 55/179 (30%), Gaps = 15/179 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS+G PG G +G G+
Sbjct: 869 PGAAGFPGGRGPPGPPGSNGNPGPPGSSGAPGKDGPPGPPGSNGAPGSPGISGPKGDSGP 928
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL------ 346
G RG +G+ G G PG +G G G+KG NG
Sbjct: 929 PGERGAPGPQGPPGAPGPLGIAGLTGARGLAGPPGMPGARGSPGPQGIKGENGKPGPSGQ 988
Query: 347 ---------QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
QGLPGLAG G+ G G PGA G G
Sbjct: 989 NGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGAPGAKGDRGENGSPGAPGAPG 1047
Score = 56.6 bits (135), Expect = 5e-08
Identities = 46/169 (27%), Positives = 53/169 (31%), Gaps = 3/169 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PG+ G G PG +G G G G +GE
Sbjct: 419 PGTNGVPGQRGAAGEPGKNGAKGDPGPRGERGEAGSPGIAGPKGEDGKDGSPGEPGANGL 478
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGL 355
G GE +G G G PG+KGP RG PG G G+ G
Sbjct: 479 PGAAGERGVPGF---------------RGPAGANGLPGEKGPPGDRGGPGPAGPRGVAGE 523
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
PG G G G TG+PG G G R
Sbjct: 524 PGRDGLPGGPGLRGIPGSPGGPGSDGKPGPPGSQGETGRPGPPGSPGPR 572
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/164 (28%), Positives = 50/164 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG+ GP G G AG G +
Sbjct: 825 GERGAPGEKGEGGPPGAAGPAGGSGPAGPPGPQGV------------------------K 860
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG G G G G G G PG G NG G PG++
Sbjct: 861 GERGSPGGPGAAGFPGGRGPPGPPGSNGNPGPPGSSGAPGKDGPPGPPGSNGAPGSPGIS 920
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G GD G G PGA GP GI
Sbjct: 921 GPKGDS---------------GPPGERGAPGPQGPPGAPGPLGI 949
>ref|NP_001159981.1| collagen alpha-1(XI) chain [Bos taurus].
Length = 1817
Score = 180 bits (457), Expect(2) = 2e-45
Identities = 137/455 (30%), Positives = 186/455 (40%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1355 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1414
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1415 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1474
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1475 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQ 1534
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1535 KGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAESTQADAGDNILDYNDGMEEIFGSL 1594
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1595 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1654
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1655 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDIEGNSIN--MVQMTF 1709
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TY+C S+A+ D +G+ KA+ GSND E+ + N L DG
Sbjct: 1710 LKLLTASARQNFTYYCHQSVAWYDMSSGSYDKALRFLGSNDEEMSYDNNPYI--KALFDG 1767
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++PI+D+ D G+
Sbjct: 1768 CASR-KGYEKTVIEINTPKIDQVPIVDVMINDFGD 1801
Score = 21.9 bits (45), Expect(2) = 2e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1803 NQKFGFEVGPVCF 1815
Score = 65.5 bits (158), Expect = 1e-10
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER +
Sbjct: 597 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGED 641
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G G G+PG G G PG KG+ G QG PG
Sbjct: 642 GIRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPIGQPGIAGVDGPPGPKGNMGPQGEPGPP 701
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ K G G PGA GP G
Sbjct: 702 GQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 744
Score = 65.5 bits (158), Expect = 1e-10
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 1004 PGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1063
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1064 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1123
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1124 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1170
Score = 65.1 bits (157), Expect = 1e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 691 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 750
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 751 QSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 810
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 811 EVGQVGPR------------GEDGPEGPKGRAGPTGDPGPPGQAG 843
Score = 63.5 bits (153), Expect = 4e-10
Identities = 45/163 (27%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1119 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1157
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1158 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1217
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG++G G
Sbjct: 1218 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVG 1260
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 722 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGV 781
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 782 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPPGQ 841
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 842 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 901
Query: 500 R 502
R
Sbjct: 902 R 902
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 930 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 989
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 990 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQ 1049
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1050 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1098
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1212 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGV--------- 1262
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1263 GEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1322
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1323 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1362
Score = 55.1 bits (131), Expect = 1e-07
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1253 PGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1312
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1313 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1372
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1373 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1423
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1284 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1343
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1344 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1403
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1404 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGL 1450
Score = 53.9 bits (128), Expect = 3e-07
Identities = 43/167 (25%), Positives = 53/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG +GA GE G G G GPPG G+ G +G
Sbjct: 557 PGSSGAKGEMGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL 616
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G++G G G +G PG+ GPRGL G +G G G
Sbjct: 617 PGLPGDKGHRGERGPQGPPGPPGEDGIRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPIGQ 676
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG+AG G G G G +GP G
Sbjct: 677 PGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 723
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 903 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 962
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 963 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1022
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 1023 GPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1073
Score = 50.4 bits (119), Expect = 4e-06
Identities = 42/163 (25%), Positives = 48/163 (29%)
Frame = +2
Query: 11 VNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG 190
+ G PG G G PG G PG G G G+ G
Sbjct: 538 LRGPPGPMGLTGRPGPVGGPGSSGAKGEMGD------------------------PGPQG 573
Query: 191 NRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG 370
RG G RG G G +G G PG KG G GLPGL G
Sbjct: 574 PRG------------VQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 621
Query: 371 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G + + G G PG GP G+
Sbjct: 622 DKGHRGERGPQGPPGPPGEDGIRGEDGEIGPRGLPGEAGPRGL 664
>ref|XP_002691766.1| PREDICTED: collagen alpha-1(V) chain-like [Bos taurus].
Length = 990
Score = 166 bits (419), Expect(2) = 5e-41
Identities = 141/488 (28%), Positives = 189/488 (38%), Gaps = 48/488 (9%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG AG+DG PG G G GQ G G
Sbjct: 498 DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 557
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG--- 352
+ G +GE G G +G PG G +GLPG G +G G
Sbjct: 558 EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGAPGPDGPPGPMG 617
Query: 353 ---LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXX 523
LPGL G G + G G G+ GP G +
Sbjct: 618 PPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGVPGPQGSSGPKGEQGITGPSG 677
Query: 524 XXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPK---------------- 655
G G A QP P P
Sbjct: 678 PIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGQPGPPGPPGPPGEVIQPLPIQASRTRR 737
Query: 656 -----------------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 769
DY E+ +L SL +IE + P G+ +NPARTC+DL+L
Sbjct: 738 NIDASQLMDDAEGEQYMDYADGMEEIFGSLNSLKLEIEQMKRPLGTPQNPARTCKDLQLC 797
Query: 770 HPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPENIPAK--NWYRNSKVKKHV 940
HP++ G YW+DPNQGC+ D+ KVYC+F+ G TC+ ++ A+ +W K
Sbjct: 798 HPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSW---PKENPGS 854
Query: 941 WLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNL 1120
W E G + EG Q+ F+RLL+ A QNITY+C S+A+ D TG+
Sbjct: 855 WFSEFKRGKLLSYVDAEG--NPVGVVQMTFLRLLSASAHQNITYNCYQSVAWQDAATGSY 912
Query: 1121 KKAVILQGSNDVELVAEGNSRFTYTVLVDGC-SKKTMNGEKHHFDINK*PSRLPILDIAP 1297
KA+ GSND E+ + NS + LVDGC +KK D K ++PI+DI
Sbjct: 913 DKAMRFLGSNDEEM-SYDNSPY-IRALVDGCATKKGYQKTVLEIDTPK-VEQVPIVDIMF 969
Query: 1298 LDIGELTR 1321
D GE ++
Sbjct: 970 NDFGEASQ 977
Score = 21.6 bits (44), Expect(2) = 5e-41
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 1312 ADQKSXVDVGPVCF 1353
A QK +VGP CF
Sbjct: 975 ASQKFGFEVGPACF 988
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/168 (26%), Positives = 55/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPG---SDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG+ G G PG DGPPG G G G+
Sbjct: 490 PGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGP 549
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G +GE G+ G G+ G GP+G PG G +GL+G+
Sbjct: 550 AGPEGRQGE---------------KGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI 594
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
PG PEGGKGA 694
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 695 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGP 754
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 755 PGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 814
Query: 482 VGPAG 496
G G
Sbjct: 815 PGEKG 819
Score = 60.1 bits (144), Expect = 5e-09
Identities = 49/170 (28%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG+ G G PG +G G G G +GE K
Sbjct: 404 PGTNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG------------K 451
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGL 355
G+ GE G GE+G PG +GP GLPG KG G +G
Sbjct: 452 DGSPGEPGANGLP---------------GAAGERGAPGFRGPAGANGLPGEKGPAGERGG 496
Query: 356 PGLAGHH---GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G+ DG+ G PG+ G +G
Sbjct: 497 PGPAGPRGAPGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 546
Score = 58.9 bits (141), Expect = 1e-08
Identities = 49/176 (27%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXXX 148
PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 182 PGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAGM 241
Query: 149 XXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL 328
G GE G+ GE G PG GPRG PG
Sbjct: 242 PGFPGMKGHRGFDGRNGE---------KGDTGAPGLKGENGLPGENGAPGPMGPRGAPGE 292
Query: 329 KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 293 RGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 327
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/190 (27%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G G PG AG DG PG DGP PG GQ G KGE
Sbjct: 726 GDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGE---------------GGAP 770
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------ 304
G GE G +GE+G PG+K
Sbjct: 771 GLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGVAGPP 830
Query: 305 ------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRT 466
GP G G+KG G G PG AG G + KDG
Sbjct: 831 GGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPGKDGPP 890
Query: 467 GQPGAVGPAG 496
G PG G G
Sbjct: 891 GPPGNNGAPG 900
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/163 (27%), Positives = 48/163 (29%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG GPPG G AG G +
Sbjct: 810 GERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPP 869
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G G G G G KG G PG KG G QG PG
Sbjct: 870 GNNGNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAP 929
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G GP+G
Sbjct: 930 GPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGPSG 972
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXX 169
G GAPGE GR G PG+ DG G DGQ G G
Sbjct: 285 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 344
Query: 170 XXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ 349
G RGE QG G G PG G G PG KG G
Sbjct: 345 GSNGSPGQRGE------------------PGPQGHAGAPGPPGPPGSNGSPGGKGEMGPA 386
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+PG G G + K+G G+PG G G
Sbjct: 387 GIPGAPGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGAKGEPGPRGERG 435
Score = 52.8 bits (125), Expect = 8e-07
Identities = 47/170 (27%), Positives = 49/170 (28%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDG------NPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG NGAPG G G PG G PG G G G
Sbjct: 893 PGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGP 952
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE G G GE G GP+GLPGL G G
Sbjct: 953 RGSPGPQGVKGE------------------NGKPGPSGHNGERGPPGPQGLPGLAGTAGE 994
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G G G PG VGPAG
Sbjct: 995 PGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 1044
>ref|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
10 [Canis familiaris].
Length = 1456
Score = 331 bits (849), Expect = 9e-91
Identities = 185/449 (41%), Positives = 235/449 (52%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 992 PGLAGTAGEPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1051
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1052 SGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGS 1111
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1112 PGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1171
Query: 545 XXXXXXXXXXXXXYDF------------GYEGDFYRADQPRSPPSLRPKDYEVDATLKSL 688
G + + P + E+ +LKS+
Sbjct: 1172 PGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSV 1231
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
+ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGET
Sbjct: 1232 SGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGET 1291
Query: 869 CIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL+
Sbjct: 1292 CLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLS 1351
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
+ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T
Sbjct: 1352 SRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHT 1411
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K F+ + RLPI+DIAP D+G
Sbjct: 1412 GEWGKTVFEYRTRKAVRLPIIDIAPYDVG 1440
Score = 65.5 bits (158), Expect = 1e-10
Identities = 46/163 (28%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G G+PGS G PG G G G+ +
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRP 236
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G RG G G+KG G PGLKG NGL G G
Sbjct: 237 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAP 296
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 297 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/173 (28%), Positives = 57/173 (32%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG GPPG +G G KGE
Sbjct: 364 SPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNG 423
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNG 343
G RG G G KGEPG +G R G+PG KG +G
Sbjct: 424 APGQRG------------------GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG 465
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PG G +G + G G+ G GPAG R
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G++G G K
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G PG +G GL G G
Sbjct: 593 NGERG---GPGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGP 649
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G +G G G PGA GP G R
Sbjct: 650 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 695
Score = 60.5 bits (145), Expect = 4e-09
Identities = 49/185 (26%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G GS G PG G +G GER
Sbjct: 650 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGA 709
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 710 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGP 769
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 829
Query: 482 VGPAG 496
G G
Sbjct: 830 PGEKG 834
Score = 60.1 bits (144), Expect = 5e-09
Identities = 49/170 (28%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG+ G G PG +G G G G +GE K
Sbjct: 419 PGTNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG------------K 466
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGL 355
G+ GE G GE+G PG +GP GLPG KG G +G
Sbjct: 467 DGSPGEPGANGLP---------------GAAGERGAPGFRGPAGANGLPGEKGPAGERGG 511
Query: 356 PGLAGHH---GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G+ DG+ G PG+ G +G
Sbjct: 512 PGPAGPRGAPGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
Score = 59.3 bits (142), Expect = 8e-09
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXX 145
+PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 196 SPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAG 255
Query: 146 XXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG 325
G GE G+ GE G PG GPRG PG
Sbjct: 256 MPGFPGMKGHRGFDGRNGE---------KGDTGAPGLKGENGLPGENGAPGPMGPRGAPG 306
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 307 ERGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 342
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/190 (27%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G G PG AG DG PG DGP PG GQ G KGE
Sbjct: 741 GDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGE---------------GGAP 785
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------ 304
G GE G +GE+G PG+K
Sbjct: 786 GLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGVAGPP 845
Query: 305 ------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRT 466
GP G G+KG G G PG AG G + KDG
Sbjct: 846 GGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPGKDGPP 905
Query: 467 GQPGAVGPAG 496
G PG G G
Sbjct: 906 GPPGNNGAPG 915
Score = 57.8 bits (138), Expect = 2e-08
Identities = 48/164 (29%), Positives = 52/164 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG GPPG G AG G +
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPP 884
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G G G G PG GP PG G+NG G PG++
Sbjct: 885 GNNGN---------------------PGPPGSSGAPGKDGP---PGPPGNNGAPGSPGVS 920
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G GD G G PGA GP GI
Sbjct: 921 GPKGD---------------AGQPGEKGSPGPQGPPGAPGPLGI 949
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXX 169
G GAPGE GR G PG+ DG G DGQ G G
Sbjct: 300 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 170 XXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ 349
G RGE QG G G PG G G PG KG G
Sbjct: 360 GSNGSPGQRGE------------------PGPQGHAGAPGPPGPPGSNGSPGGKGEMGPA 401
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+PG G G + K+G G+PG G G
Sbjct: 402 GIPGAPGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGAKGEPGPRGERG 450
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/168 (28%), Positives = 57/168 (33%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGR---DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PGV+G G+AG+ G+PG GPPG G G G
Sbjct: 916 SPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGIT---------------------- 953
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
G RG GI G +G PG +GP G G +G G QG
Sbjct: 954 -----GARG------------------LAGPPGIPGPRGSPGPQGPSGHNGERGPPGPQG 990
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
LPGLAG G+ G G PGA G G
Sbjct: 991 LPGLAGTAGEPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPG 1038
>ref|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 9
[Canis familiaris].
Length = 1062
Score = 331 bits (849), Expect = 9e-91
Identities = 185/449 (41%), Positives = 235/449 (52%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 598 PGLAGTAGEPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 657
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 658 SGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGS 717
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 718 PGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 777
Query: 545 XXXXXXXXXXXXXYDF------------GYEGDFYRADQPRSPPSLRPKDYEVDATLKSL 688
G + + P + E+ +LKS+
Sbjct: 778 PGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSV 837
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
+ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGET
Sbjct: 838 SGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGET 897
Query: 869 CIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL+
Sbjct: 898 CLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLS 957
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
+ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T
Sbjct: 958 SRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHT 1017
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K F+ + RLPI+DIAP D+G
Sbjct: 1018 GEWGKTVFEYRTRKAVRLPIIDIAPYDVG 1046
Score = 68.6 bits (166), Expect = 1e-11
Identities = 50/169 (29%), Positives = 55/169 (32%), Gaps = 3/169 (1%)
Frame = +2
Query: 5 PGVNGAPGE---AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG NGAPG+ AG G+PG GP G DG+ G GE
Sbjct: 124 PGTNGAPGQRGGAGEAGSPGIPGPKGEDGKDGSPGEPGPPGPSGPRGQPGVMGFPGPKGN 183
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G GE QG G G GDKG G PG +G GL G
Sbjct: 184 DGAPGKNGERGGPGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGT 243
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G +G G G PGA GP G R
Sbjct: 244 SGPPGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 292
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/164 (28%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG+ G G PG++G PG G +G KG+
Sbjct: 490 PGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDA-------------------------- 523
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RG G PG GPRG PG +G G G PG
Sbjct: 524 -GQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGP 582
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+GH+G++ G G PG G G
Sbjct: 583 SGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGAPG 626
Score = 60.8 bits (146), Expect = 3e-09
Identities = 51/182 (28%), Positives = 62/182 (34%), Gaps = 18/182 (9%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G G PGE G G PG G PG++G+ G KGER
Sbjct: 389 GPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP--------------------- 427
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHN 340
G +GE QG++GE+G PG G RGLPG G+N
Sbjct: 428 ---GEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNN 484
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---------PGAVGPA 493
G G PG +G G G+ G+ PGA GP
Sbjct: 485 GNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPL 544
Query: 494 GI 499
GI
Sbjct: 545 GI 546
Score = 60.5 bits (145), Expect = 4e-09
Identities = 49/185 (26%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G GS G PG G +G GER
Sbjct: 247 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGA 306
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 307 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGP 366
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 367 PGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 426
Query: 482 VGPAG 496
G G
Sbjct: 427 PGEKG 431
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/190 (27%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G G PG AG DG PG DGP PG GQ G KGE
Sbjct: 338 GDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGE---------------GGAP 382
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------ 304
G GE G +GE+G PG+K
Sbjct: 383 GLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGVAGPP 442
Query: 305 ------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRT 466
GP G G+KG G G PG AG G + KDG
Sbjct: 443 GGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPGKDGPP 502
Query: 467 GQPGAVGPAG 496
G PG G G
Sbjct: 503 GPPGNNGAPG 512
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/163 (27%), Positives = 48/163 (29%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG GPPG G AG G +
Sbjct: 422 GERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPP 481
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G G G G G KG G PG KG G QG PG
Sbjct: 482 GNNGNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAP 541
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G GP+G
Sbjct: 542 GPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGPSG 584
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/164 (27%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G AG++G G GPPG G AG KG+ +
Sbjct: 196 PGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGE 255
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G G G G GP G G KG G G PG
Sbjct: 256 PGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGAAGPPGPPGS 315
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G Q G G PG GP G
Sbjct: 316 AGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRG 359
Score = 52.8 bits (125), Expect = 8e-07
Identities = 47/170 (27%), Positives = 49/170 (28%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDG------NPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG NGAPG G G PG G PG G G G
Sbjct: 505 PGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGP 564
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE G G GE G GP+GLPGL G G
Sbjct: 565 RGSPGPQGVKGE------------------NGKPGPSGHNGERGPPGPQGLPGLAGTAGE 606
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G G G PG VGPAG
Sbjct: 607 PGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 656
>ref|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 2
[Canis familiaris].
Length = 1465
Score = 331 bits (849), Expect = 9e-91
Identities = 185/449 (41%), Positives = 235/449 (52%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1061 SGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGS 1120
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1121 PGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1180
Query: 545 XXXXXXXXXXXXXYDF------------GYEGDFYRADQPRSPPSLRPKDYEVDATLKSL 688
G + + P + E+ +LKS+
Sbjct: 1181 PGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSV 1240
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
+ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGET
Sbjct: 1241 SGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGET 1300
Query: 869 CIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLAF+RLL+
Sbjct: 1301 CLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLS 1360
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
+ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+K T
Sbjct: 1361 SRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHT 1420
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K F+ + RLPI+DIAP D+G
Sbjct: 1421 GEWGKTVFEYRTRKAVRLPIIDIAPYDVG 1449
Score = 65.5 bits (158), Expect = 1e-10
Identities = 46/163 (28%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G G+PGS G PG G G G+ +
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRP 236
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G RG G G+KG G PGLKG NGL G G
Sbjct: 237 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAP 296
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 297 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/164 (28%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG+ G G PG++G PG G +G KG+
Sbjct: 893 PGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDA-------------------------- 926
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RG G PG GPRG PG +G G G PG
Sbjct: 927 -GQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGP 985
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+GH+G++ G G PG G G
Sbjct: 986 SGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGAPG 1029
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/173 (28%), Positives = 57/173 (32%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG GPPG +G G KGE
Sbjct: 364 SPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNG 423
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNG 343
G RG G G KGEPG +G R G+PG KG +G
Sbjct: 424 APGQRG------------------GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG 465
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PG G +G + G G+ G GPAG R
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G++G G K
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G PG +G GL G G
Sbjct: 593 NGERG---GPGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGP 649
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G +G G G PGA GP G R
Sbjct: 650 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 695
Score = 60.8 bits (146), Expect = 3e-09
Identities = 51/182 (28%), Positives = 62/182 (34%), Gaps = 18/182 (9%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G G PGE G G PG G PG++G+ G KGER
Sbjct: 792 GPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP--------------------- 830
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHN 340
G +GE QG++GE+G PG G RGLPG G+N
Sbjct: 831 ---GEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNN 887
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---------PGAVGPA 493
G G PG +G G G+ G+ PGA GP
Sbjct: 888 GNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPL 947
Query: 494 GI 499
GI
Sbjct: 948 GI 949
Score = 60.5 bits (145), Expect = 4e-09
Identities = 49/185 (26%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G GS G PG G +G GER
Sbjct: 650 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGA 709
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 710 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGP 769
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 829
Query: 482 VGPAG 496
G G
Sbjct: 830 PGEKG 834
Score = 60.1 bits (144), Expect = 5e-09
Identities = 49/170 (28%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG+ G G PG +G G G G +GE K
Sbjct: 419 PGTNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG------------K 466
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGL 355
G+ GE G GE+G PG +GP GLPG KG G +G
Sbjct: 467 DGSPGEPGANGLP---------------GAAGERGAPGFRGPAGANGLPGEKGPAGERGG 511
Query: 356 PGLAGHH---GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G+ DG+ G PG+ G +G
Sbjct: 512 PGPAGPRGAPGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
Score = 59.3 bits (142), Expect = 8e-09
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXX 145
+PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 196 SPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAG 255
Query: 146 XXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG 325
G GE G+ GE G PG GPRG PG
Sbjct: 256 MPGFPGMKGHRGFDGRNGE---------KGDTGAPGLKGENGLPGENGAPGPMGPRGAPG 306
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 307 ERGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 342
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/190 (27%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G G PG AG DG PG DGP PG GQ G KGE
Sbjct: 741 GDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGE---------------GGAP 785
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------ 304
G GE G +GE+G PG+K
Sbjct: 786 GLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGVAGPP 845
Query: 305 ------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRT 466
GP G G+KG G G PG AG G + KDG
Sbjct: 846 GGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPGKDGPP 905
Query: 467 GQPGAVGPAG 496
G PG G G
Sbjct: 906 GPPGNNGAPG 915
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/163 (27%), Positives = 48/163 (29%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG GPPG G AG G +
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPP 884
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G G G G G KG G PG KG G QG PG
Sbjct: 885 GNNGNPGPPGSSGAPGKDGPPGPPGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAP 944
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G GP+G
Sbjct: 945 GPLGIAGITGARGLAGPPGIPGPRGSPGPQGVKGENGKPGPSG 987
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXX 169
G GAPGE GR G PG+ DG G DGQ G G
Sbjct: 300 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 170 XXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ 349
G RGE QG G G PG G G PG KG G
Sbjct: 360 GSNGSPGQRGE------------------PGPQGHAGAPGPPGPPGSNGSPGGKGEMGPA 401
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+PG G G + K+G G+PG G G
Sbjct: 402 GIPGAPGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGAKGEPGPRGERG 450
Score = 52.8 bits (125), Expect = 8e-07
Identities = 47/170 (27%), Positives = 49/170 (28%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDG------NPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG NGAPG G G PG G PG G G G
Sbjct: 908 PGNNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGP 967
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE G G GE G GP+GLPGL G G
Sbjct: 968 RGSPGPQGVKGE------------------NGKPGPSGHNGERGPPGPQGLPGLAGTAGE 1009
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G G G PG VGPAG
Sbjct: 1010 PGRDGNPGSDGLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 1059
>ref|XP_535997.2| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 1
[Canis familiaris].
Length = 1244
Score = 302 bits (774), Expect = 4e-82
Identities = 177/455 (38%), Positives = 226/455 (49%), Gaps = 21/455 (4%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS-------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
G G PGE G G PG +G PG G GH G
Sbjct: 792 GPRGGPGERGEHGPPGPAGFPGAPNGSPGAPGAPGHPGP------------------PGP 833
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
K G+RGE QG RG+KGE G++G G+ G +G G
Sbjct: 834 VGPAGKSGDRGETGPAGPSGAPGPAGSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGN 893
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXX 526
G PG G G Q KDG +G PG +GP G R
Sbjct: 894 PGAPGSPGPAGHQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGS 953
Query: 527 XXXXXXXXXXXXXXXXXXXYDF------------GYEGDFYRADQPRSPPSLRPKDYEVD 670
G + + P + E+
Sbjct: 954 EGSPGHPGQPGPPGPPGAPGPCCGGGAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIM 1013
Query: 671 ATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCD 850
+LKS++ QIE+L++P+GSRK+PAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+
Sbjct: 1014 TSLKSVSGQIESLVSPDGSRKHPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCN 1073
Query: 851 FSTGETCIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLA 1027
TGETC+ A P ++P KNW+ +S KKHVW GE+++GG QF Y + + QLA
Sbjct: 1074 METGETCLNASPGSVPRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLA 1133
Query: 1028 FMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVD 1207
F+RLL++ ASQNITYHCKNSIAYMD +GN+KKA+ L GSN+ E AEGNS+FTYTVL D
Sbjct: 1134 FLRLLSSRASQNITYHCKNSIAYMDHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLED 1193
Query: 1208 GCSKKTMNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
GC+K T K F+ + RLPI+DIAP D+G
Sbjct: 1194 GCTKHTGEWGKTVFEYRTRKAVRLPIIDIAPYDVG 1228
Score = 65.5 bits (158), Expect = 1e-10
Identities = 46/163 (28%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G G+PGS G PG G G G+ +
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRP 236
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G RG G G+KG G PGLKG NGL G G
Sbjct: 237 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAP 296
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 297 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/173 (28%), Positives = 57/173 (32%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG GPPG +G G KGE
Sbjct: 364 SPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNG 423
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNG 343
G RG G G KGEPG +G R G+PG KG +G
Sbjct: 424 APGQRG------------------GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG 465
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PG G +G + G G+ G GPAG R
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/166 (27%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G++G G K
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G PG +G GL G G
Sbjct: 593 NGERG---GPGGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGP 649
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G +G G G PGA GP G R
Sbjct: 650 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 695
Score = 62.0 bits (149), Expect = 1e-09
Identities = 52/189 (27%), Positives = 56/189 (29%), Gaps = 25/189 (13%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G GS G PG G +G GER
Sbjct: 650 PGENGKPGEPGPKGESGSPGVPGGKGDSGAPGERGPPGAAGPMGPRGGAGPPGPEGGKGA 709
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 710 AGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGP 769
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQ----XXXXXXXXXXXXXXXXXXXXXXKDGRTG 469
P G PG KG G GLPG+AG G G G
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPNGSPGAPGAPGHPG 829
Query: 470 QPGAVGPAG 496
PG VGPAG
Sbjct: 830 PPGPVGPAG 838
Score = 60.1 bits (144), Expect = 5e-09
Identities = 49/170 (28%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG+ G G PG +G G G G +GE K
Sbjct: 419 PGTNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG------------K 466
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGL 355
G+ GE G GE+G PG +GP GLPG KG G +G
Sbjct: 467 DGSPGEPGANGLP---------------GAAGERGAPGFRGPAGANGLPGEKGPAGERGG 511
Query: 356 PGLAGHH---GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G+ DG+ G PG+ G +G
Sbjct: 512 PGPAGPRGAPGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
Score = 59.3 bits (142), Expect = 8e-09
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXX 145
+PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 196 SPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAG 255
Query: 146 XXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG 325
G GE G+ GE G PG GPRG PG
Sbjct: 256 MPGFPGMKGHRGFDGRNGE---------KGDTGAPGLKGENGLPGENGAPGPMGPRGAPG 306
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 307 ERGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 342
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXX 169
G GAPGE GR G PG+ DG G DGQ G G
Sbjct: 300 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 170 XXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ 349
G RGE QG G G PG G G PG KG G
Sbjct: 360 GSNGSPGQRGE------------------PGPQGHAGAPGPPGPPGSNGSPGGKGEMGPA 401
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+PG G G + K+G G+PG G G
Sbjct: 402 GIPGAPGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGAKGEPGPRGERG 450
>ref|XP_535998.2| PREDICTED: similar to Collagen alpha 2(V) chain precursor [Canis
familiaris].
Length = 1480
Score = 300 bits (767), Expect(2) = 1e-81
Identities = 177/448 (39%), Positives = 229/448 (51%), Gaps = 13/448 (2%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG GE G +G G+DG PGRDG G +G+R
Sbjct: 1018 PGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD 1077
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG+ QG RG+KG+ GD+G RG G +G GLQGLPG
Sbjct: 1078 AGQRGDPGSRGPVGPPGRIGKRGLLGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGP 1137
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G +G+Q K+G G G +GP G+R
Sbjct: 1138 PGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGE 1197
Query: 545 XXXXXXXXXXXXX----------YDFGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLN 691
YD + ++ P R K D V ATLKSL+
Sbjct: 1198 PGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDRNKTDPGVHATLKSLS 1257
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
+QIET+ +P+GS+K+PARTC DL+L H SG YWIDPNQG DAIKVYC+ TGETC
Sbjct: 1258 SQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMDTGETC 1317
Query: 872 IRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLAN 1048
I A P +IP K W+ + S K +W G +N G+QF Y + + TQ+ F+RLL+
Sbjct: 1318 ISANPSSIPRKTWWASKSSDHKPIWYGLDMNRGSQFVYG-DHQSPNAAITQMTFLRLLSK 1376
Query: 1049 HASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTM 1228
ASQNITY CKNS+ YMD++ NLKKAV+L+GSND+E+ AEGN RF Y VL D CSK+
Sbjct: 1377 EASQNITYICKNSVGYMDDQAKNLKKAVVLKGSNDLEIKAEGNVRFRYIVLHDTCSKRNG 1436
Query: 1229 NGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
N K F+ + +RLPI+D+A +D+G
Sbjct: 1437 NVGKTVFEYRTQNVARLPIVDLAAVDVG 1464
Score = 23.5 bits (49), Expect(2) = 1e-81
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
DQ+ +++GPVCF
Sbjct: 1467 DQEFGIEIGPVCF 1479
Score = 65.1 bits (157), Expect = 2e-10
Identities = 47/164 (28%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PGE G+ G+ G G PG G G +GER
Sbjct: 661 PGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNP----------------------- 697
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RGE +G G G PGD GP GL G+ G G+ G PG
Sbjct: 698 -GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 756
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG G PG +GP G
Sbjct: 757 KGDRG------------GIGEKGAEGTAGNDGARGLPGPLGPPG 788
Score = 62.8 bits (151), Expect = 7e-10
Identities = 52/177 (29%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGN---PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G GA G AG DG PG GPPG G G KGE
Sbjct: 764 GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE---------------PGPRGLVGPP 808
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------PRGLPGLKGHN 340
GN G G++GE GEPG KG P+GL G G +
Sbjct: 809 GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPH 868
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTG---QPGAVGPAGIR 502
G G+PGL G G Q G G +PG GP G+R
Sbjct: 869 GPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPPGAPGPAGPLGEPGKEGPPGLR 925
Score = 62.4 bits (150), Expect = 1e-09
Identities = 47/173 (27%), Positives = 57/173 (32%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AGR G PG G PG G G G+
Sbjct: 886 PGATGFPGSAGRVGPPGPPGAPGPAGPLGEPGKEGPP----------------------- 922
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---------RGLPGLKGH 337
G RG+ +G GE G+PG GP RG+ G+ G
Sbjct: 923 -GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 981
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G+PGL G G +G G+PG GPAG
Sbjct: 982 RGERGMPGLPGPAGTPGKVGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAG 1034
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/165 (27%), Positives = 59/165 (35%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G+PG+ G PG G G KG R
Sbjct: 250 PGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAT----------- 298
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G++GE +G G +G PG +G G+PG G G G+PG
Sbjct: 299 -GSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGTHGMPGKPGPMGPLGIPGS 357
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G+ + G TG PG VG G+
Sbjct: 358 SGFPGN---PGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGL 399
Score = 60.1 bits (144), Expect = 5e-09
Identities = 48/174 (27%), Positives = 59/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNP---GSDGPPGRDGQ------AGHKGERXXXXXXXXXXXXXXXX 154
+PG +G PG AG G+P GS GPPG GQ G KGE
Sbjct: 417 SPGTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIG 476
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G+ G G+ G KG G++GP G G KG
Sbjct: 477 PPGEEGKRGPRGDPGTVGPPGSMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKG 536
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G PG G G + +DGR G PG++G G
Sbjct: 537 SQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRG 590
Score = 59.3 bits (142), Expect = 8e-09
Identities = 46/172 (26%), Positives = 55/172 (31%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G DG PG+ GP G G +G G
Sbjct: 395 GSQGLPGTVGTDGTPGAKGPTGSPGTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVP 454
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQ 349
G +GE +G RG +G+PG GP RG PG +G G
Sbjct: 455 GFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGSMGERGAPGNRGFPGSD 514
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGR---TGQPGAVGPAG 496
GLPG G G++ G TG PG GP G
Sbjct: 515 GLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEG 566
Score = 58.9 bits (141), Expect = 1e-08
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA G G G PG DG PGR+G G G
Sbjct: 230 GPIGARGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLE 289
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE G RG GE G GP+G PG +G +G+ G PG
Sbjct: 290 GPKGEVGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGTHGMPGKPGPM 349
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +G GQ G GP G
Sbjct: 350 GPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPG 392
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/170 (26%), Positives = 52/170 (30%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG GR G+ G GPPG G G GE +
Sbjct: 922 PGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 981
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG +G G G PG GP G PG +G G G PG
Sbjct: 982 RGERGMPGLPGPAGTPGKVGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGR 1041
Query: 365 ------AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD G+ G PG+ GP G
Sbjct: 1042 DGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPVG 1091
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/164 (26%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G G +GPPG+ G+ G G
Sbjct: 220 PGEPGEPGPMGPIGARGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 279
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RG G G G G GPRG+PG +G G QG PG
Sbjct: 280 KGHRGH---KGLEGPKGEVGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQ 336
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G HG G G GA GP G
Sbjct: 337 RGTHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEG 380
Score = 57.8 bits (138), Expect = 2e-08
Identities = 49/177 (27%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGEAG G PG G PG+DG+ G G
Sbjct: 605 GDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA--------------------- 643
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---------KGPRGLPGLKGHN 340
G RGE G G++G PGD +G RG PG +G
Sbjct: 644 GERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEP 703
Query: 341 GLQGLPG---LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G+ GLPG +AG HG G +G PG GP G++
Sbjct: 704 GITGLPGEKGMAGGHGPDGPKG------------------SPGPSGTPGDTGPPGLQ 742
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,404,796
Number of extensions: 889328
Number of successful extensions: 17244
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 8054
Number of HSP's successfully gapped: 378
Length of query: 453
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 347
Effective length of database: 15,340,888
Effective search space: 5323288136
Effective search space used: 5323288136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
G G G G PG +GP G+
Sbjct: 595 PGPVGEQG---------------------LPGAPGPDGPPGPMGPPGL 621
>ref|NP_001192553.1| collagen alpha-3(V) chain [Bos taurus].
Length = 1745
Score = 161 bits (408), Expect = 1e-39
Identities = 137/463 (29%), Positives = 183/463 (39%), Gaps = 27/463 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA GE G G PG GP GR GQ G +GE+ +
Sbjct: 1295 PGPPGASGEPGAPGPPGKRGPSGRMGQEGREGEKGAKGEPGPDGPPGRTGPVGARGPPGR 1354
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL--- 355
G G G G G PG KG G G KGH GL GL
Sbjct: 1355 VGPEGLRGIPGPVGEPGLLGPPGLLGPPGPLGPSGLPGLKGDAGPKGEKGHIGLIGLVGP 1414
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXX 535
PG G GDQ G G G VGP G +
Sbjct: 1415 PGEVGEKGDQGLPGVQGSPGLQGEPGSPGPIGSLGHPGPQGVVGPPGQKGSKGSPGSQ-- 1472
Query: 536 XXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP-PS-----LRPKDY------------ 661
G GD P P PS LR +
Sbjct: 1473 -------------------GPRGDAGPPGPPGPPGPSAELHGLRRRRRSLLGLGTPEGGL 1513
Query: 662 -EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIK 838
EV A++ SL+ ++E L P G+ + P C++L SHP G YWIDPNQGC DA++
Sbjct: 1514 EEVLASMASLSFELEQLRRPPGTAERPGLVCKELHRSHPHLPDGEYWIDPNQGCARDALR 1573
Query: 839 VYCDFST-GETCIRAQP--ENIPAKNWYRNSKVKKHVWLGETINGGTQFEY-NMEGVTTK 1006
V+C+F+ GETC+ E + +W SK K W T G +F Y + +G
Sbjct: 1574 VFCNFTAGGETCLYPDKKFETVKLASW---SKEKPGGWY-STFRRGKKFSYVDADGAAVS 1629
Query: 1007 EMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRF 1186
QL F++LL+ A Q+ T+ C+NS A++DE G+ ++ G+N E+ +
Sbjct: 1630 --VVQLTFLKLLSATARQSFTFTCQNSAAWLDEAAGDHSRSARFLGANGEEVSFNQMAAA 1687
Query: 1187 TYTVLVDGCS-KKTMNGEKHHFDINK*PSRLPILDIAPLDIGE 1312
T TV DGC +K + F ++ LP+LD+A D G+
Sbjct: 1688 TITVPYDGCRLRKGQSKTLFEFSSSR-VGFLPLLDVAAADFGQ 1729
Score = 68.6 bits (166), Expect = 1e-11
Identities = 49/171 (28%), Positives = 60/171 (35%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG GAPG G+DG PG G PG G AG GE
Sbjct: 1042 SPGERGAPGPTGKDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKG------------ 1089
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG------DKGPRGLPGLKGHNG 343
G++G+ G +G +G PG D G RG PG+ G G
Sbjct: 1090 SKGDKGDAGPPGPTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPG 1149
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
LQG+PG AG G+ +G G PG VG G
Sbjct: 1150 LQGMPGPAGEKGEVGDVGSMGPHGAPGPRGPQGPSGSEGPPGLPGGVGQPG 1200
Score = 67.4 bits (163), Expect = 3e-11
Identities = 50/163 (30%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G DG G++GPPG GQAG G R
Sbjct: 570 GYVGKPGPPGEDGRKGAEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRPGVIGSDGAPGAK 629
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G QG G +G PG +GP G PG KG G G+PGL
Sbjct: 630 GNVG------------PPGEPGPPGQQGNPGSQGIPGPQGPIGTPGEKGPPGNPGIPGLP 677
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +G TG+ GA GPAG
Sbjct: 678 GSEG------------------PPGHPGHEGPTGEKGAQGPAG 702
Score = 62.8 bits (151), Expect = 7e-10
Identities = 45/164 (27%), Positives = 55/164 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS+GPPG G G GE+
Sbjct: 662 PGEKGPPGNPGIPGLPGSEGPPGHPGHEGPTGEKGAQGPAGSAGPPGYPGPRGVKGTSGN 721
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G++G++G+PG GPR G G GL+G GL
Sbjct: 722 RGLQGE------KGEKGEDGFPGFKGDAGLKGDRGQPGPPGPR---GEDGPEGLKGQEGL 772
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG +GP G
Sbjct: 773 LGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLG 816
Score = 62.8 bits (151), Expect = 7e-10
Identities = 49/175 (28%), Positives = 58/175 (33%), Gaps = 9/175 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG+ G G G GPPG G G GER +
Sbjct: 980 PGPHGAPGDPGPTGLKGDKGPPGPVGANGSPGERGPVGPAGSIGLPGQSGGQGPVGPTGE 1039
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ----- 349
G+ GE G G GE GDKG G PG KG G +
Sbjct: 1040 KGSPGERGAPGPTGKDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDKGDAGP 1099
Query: 350 ----GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G+ GL GH G DG G PG +GP G++
Sbjct: 1100 PGPTGIRGLVGHPGS---PGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQ 1151
Score = 62.4 bits (150), Expect = 9e-10
Identities = 46/168 (27%), Positives = 55/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPGS G PG G G GE+
Sbjct: 631 NVGPPGEPGPPGQQGNPGSQGIPGPQGPIGTPGEKGPPGNPGIPGLPGSEGPPGHPGHEG 690
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QG 352
G +G G RG +GE G+KG G PG KG GL +G
Sbjct: 691 PTGEKGAQGPAGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDAGLKGDRG 750
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G+ + G+ G PG G G
Sbjct: 751 QPGPPGPRGEDGPEGLKGQEGLLGEEGPPGSAGEKGKLGVPGLPGYPG 798
Score = 61.6 bits (148), Expect = 2e-09
Identities = 47/165 (28%), Positives = 55/165 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPG G G GS+GPPG G G G +
Sbjct: 1170 GPHGAPGPRGPQGPSGSEGPPGLPGGVGQPGAVGEKGEPGEPGDPGPPGTPGTPGPRGEV 1229
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G G G PG KGP G G KG+ G GLPG
Sbjct: 1230 GEKGDT---------------------GPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDL 1268
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G +G+PGA GP G R
Sbjct: 1269 GPPGDPGVSGQDGPPGEKGNPGDVGGPGPPGASGEPGAPGPPGKR 1313
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 51/169 (30%), Gaps = 3/169 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PG G PG G G G R +
Sbjct: 1193 PGGVGQPGAVGEKGEPGEPGDPGPPGTPGTPGPRGEVGEKGDTGPSGAAGPPGKKGPPGE 1252
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +G G GEKG PGD G G PG G G G PG
Sbjct: 1253 DGAKGNVGPTGLPGDLGPPGDPGVSGQDGPPGEKGNPGDVGGPGPPGASGEPGAPGPPGK 1312
Query: 365 ---AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
+G G + G G PG VGP G+R
Sbjct: 1313 RGPSGRMGQEGREGEKGAKGEPGPDGPPGRTGPVGARGPPGRVGPEGLR 1361
Score = 60.1 bits (144), Expect = 4e-09
Identities = 49/163 (30%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G PG GR G GS G PG G G KG+R
Sbjct: 789 GVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGLEGERGPP------------ 836
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GEKG PG +GP G G KG G QG G+
Sbjct: 837 GARGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGVP 896
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G + K G G G GP G
Sbjct: 897 GHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPG 939
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/166 (26%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G+ G G PG G G+DG G GE+
Sbjct: 836 PGARGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGV 895
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ G+ QG GE G G++GP G PG G GL GL G
Sbjct: 896 PGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGR 955
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G G PG GP G++
Sbjct: 956 EGAKGDVGPLGPLGKEGPPGPRGF------PGPHGAPGDPGPTGLK 995
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/170 (25%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGN---PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG+ G GE G G G GPPGR+G+ G G
Sbjct: 500 PGLKGEMGEMGPQGPRGLQGPHGPPGREGKMGRAGADGARGLPGATGPKGDRGFDGLPGL 559
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK---GPRGLPGLKGHNGL 346
+ G RG+ G G+ GEPG + GPRG PG G G+
Sbjct: 560 PGEKGQRGDFGYVGKPGPPGEDGRKGAEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRPGV 619
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G G PG GP G
Sbjct: 620 IGSDGAPGAKGNVGPPGEPGPPGQQGNPGSQGIPGPQGPIGTPGEKGPPG 669
Score = 52.8 bits (125), Expect = 7e-07
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG +G G PG P G+DG GH G+R +
Sbjct: 872 PGLQGPPGFSGPKGPPG---PQGKDGVPGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGE 928
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGH---NGLQGL 355
G GE +G +G+ G G G G PG +G +G G
Sbjct: 929 AGPLGERGPPGPPGPPGEQGLPGLEGREGAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGD 988
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G GD+ G GQ G GP G
Sbjct: 989 PGPTGLKGDKGPPGPVGANGSPGERGPVGPAGSIGLPGQSGGQGPVG 1035
>ref|XP_002688885.1| PREDICTED: collagen, type V, alpha 3 [Bos taurus].
Length = 1745
Score = 161 bits (408), Expect = 1e-39
Identities = 137/463 (29%), Positives = 183/463 (39%), Gaps = 27/463 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA GE G G PG GP GR GQ G +GE+ +
Sbjct: 1295 PGPPGASGEPGAPGPPGKRGPSGRMGQEGREGEKGAKGEPGPDGPPGRTGPVGARGPPGR 1354
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL--- 355
G G G G G PG KG G G KGH GL GL
Sbjct: 1355 VGPEGLRGIPGPVGEPGLLGPPGLLGPPGPLGPSGLPGLKGDAGPKGEKGHIGLIGLVGP 1414
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXX 535
PG G GDQ G G G VGP G +
Sbjct: 1415 PGEVGEKGDQGLPGVQGSPGLQGEPGSPGPIGSLGHPGPQGVVGPPGQKGSKGSPGSQ-- 1472
Query: 536 XXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP-PS-----LRPKDY------------ 661
G GD P P PS LR +
Sbjct: 1473 -------------------GPRGDAGPPGPPGPPGPSAELHGLRRRRRSLLGLGTPEGGL 1513
Query: 662 -EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIK 838
EV A++ SL+ ++E L P G+ + P C++L SHP G YWIDPNQGC DA++
Sbjct: 1514 EEVLASMASLSFELEQLRRPPGTAERPGLVCKELHRSHPHLPDGEYWIDPNQGCARDALR 1573
Query: 839 VYCDFST-GETCIRAQP--ENIPAKNWYRNSKVKKHVWLGETINGGTQFEY-NMEGVTTK 1006
V+C+F+ GETC+ E + +W SK K W T G +F Y + +G
Sbjct: 1574 VFCNFTAGGETCLYPDKKFETVKLASW---SKEKPGGWY-STFRRGKKFSYVDADGAAVS 1629
Query: 1007 EMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRF 1186
QL F++LL+ A Q+ T+ C+NS A++DE G+ ++ G+N E+ +
Sbjct: 1630 --VVQLTFLKLLSATARQSFTFTCQNSAAWLDEAAGDHSRSARFLGANGEEVSFNQMAAA 1687
Query: 1187 TYTVLVDGCS-KKTMNGEKHHFDINK*PSRLPILDIAPLDIGE 1312
T TV DGC +K + F ++ LP+LD+A D G+
Sbjct: 1688 TITVPYDGCRLRKGQSKTLFEFSSSR-VGFLPLLDVAAADFGQ 1729
Score = 68.6 bits (166), Expect = 1e-11
Identities = 49/171 (28%), Positives = 60/171 (35%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG GAPG G+DG PG G PG G AG GE
Sbjct: 1042 SPGERGAPGPTGKDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKG------------ 1089
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG------DKGPRGLPGLKGHNG 343
G++G+ G +G +G PG D G RG PG+ G G
Sbjct: 1090 SKGDKGDAGPPGPTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPG 1149
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
LQG+PG AG G+ +G G PG VG G
Sbjct: 1150 LQGMPGPAGEKGEVGDVGSMGPHGAPGPRGPQGPSGSEGPPGLPGGVGQPG 1200
Score = 67.4 bits (163), Expect = 3e-11
Identities = 50/163 (30%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G DG G++GPPG GQAG G R
Sbjct: 570 GYVGKPGPPGEDGRKGAEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRPGVIGSDGAPGAK 629
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN G QG G +G PG +GP G PG KG G G+PGL
Sbjct: 630 GNVG------------PPGEPGPPGQQGNPGSQGIPGPQGPIGTPGEKGPPGNPGIPGLP 677
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +G TG+ GA GPAG
Sbjct: 678 GSEG------------------PPGHPGHEGPTGEKGAQGPAG 702
Score = 62.8 bits (151), Expect = 7e-10
Identities = 45/164 (27%), Positives = 55/164 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS+GPPG G G GE+
Sbjct: 662 PGEKGPPGNPGIPGLPGSEGPPGHPGHEGPTGEKGAQGPAGSAGPPGYPGPRGVKGTSGN 721
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G++G++G+PG GPR G G GL+G GL
Sbjct: 722 RGLQGE------KGEKGEDGFPGFKGDAGLKGDRGQPGPPGPR---GEDGPEGLKGQEGL 772
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG +GP G
Sbjct: 773 LGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLG 816
Score = 62.8 bits (151), Expect = 7e-10
Identities = 49/175 (28%), Positives = 58/175 (33%), Gaps = 9/175 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GAPG+ G G G GPPG G G GER +
Sbjct: 980 PGPHGAPGDPGPTGLKGDKGPPGPVGANGSPGERGPVGPAGSIGLPGQSGGQGPVGPTGE 1039
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ----- 349
G+ GE G G GE GDKG G PG KG G +
Sbjct: 1040 KGSPGERGAPGPTGKDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDKGDAGP 1099
Query: 350 ----GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G+ GL GH G DG G PG +GP G++
Sbjct: 1100 PGPTGIRGLVGHPGS---PGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQ 1151
Score = 62.4 bits (150), Expect = 9e-10
Identities = 46/168 (27%), Positives = 55/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPGS G PG G G GE+
Sbjct: 631 NVGPPGEPGPPGQQGNPGSQGIPGPQGPIGTPGEKGPPGNPGIPGLPGSEGPPGHPGHEG 690
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QG 352
G +G G RG +GE G+KG G PG KG GL +G
Sbjct: 691 PTGEKGAQGPAGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDAGLKGDRG 750
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G+ + G+ G PG G G
Sbjct: 751 QPGPPGPRGEDGPEGLKGQEGLLGEEGPPGSAGEKGKLGVPGLPGYPG 798
Score = 61.6 bits (148), Expect = 2e-09
Identities = 47/165 (28%), Positives = 55/165 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPG G G GS+GPPG G G G +
Sbjct: 1170 GPHGAPGPRGPQGPSGSEGPPGLPGGVGQPGAVGEKGEPGEPGDPGPPGTPGTPGPRGEV 1229
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G G G PG KGP G G KG+ G GLPG
Sbjct: 1230 GEKGDT---------------------GPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDL 1268
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G +G+PGA GP G R
Sbjct: 1269 GPPGDPGVSGQDGPPGEKGNPGDVGGPGPPGASGEPGAPGPPGKR 1313
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 51/169 (30%), Gaps = 3/169 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PG G PG G G G R +
Sbjct: 1193 PGGVGQPGAVGEKGEPGEPGDPGPPGTPGTPGPRGEVGEKGDTGPSGAAGPPGKKGPPGE 1252
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +G G GEKG PGD G G PG G G G PG
Sbjct: 1253 DGAKGNVGPTGLPGDLGPPGDPGVSGQDGPPGEKGNPGDVGGPGPPGASGEPGAPGPPGK 1312
Query: 365 ---AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
+G G + G G PG VGP G+R
Sbjct: 1313 RGPSGRMGQEGREGEKGAKGEPGPDGPPGRTGPVGARGPPGRVGPEGLR 1361
Score = 60.1 bits (144), Expect = 4e-09
Identities = 49/163 (30%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G PG GR G GS G PG G G KG+R
Sbjct: 789 GVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGLEGERGPP------------ 836
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GEKG PG +GP G G KG G QG G+
Sbjct: 837 GARGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGVP 896
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G + K G G G GP G
Sbjct: 897 GHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPG 939
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/166 (26%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G+ G G PG G G+DG G GE+
Sbjct: 836 PGARGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGV 895
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ G+ QG GE G G++GP G PG G GL GL G
Sbjct: 896 PGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGR 955
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G G PG GP G++
Sbjct: 956 EGAKGDVGPLGPLGKEGPPGPRGF------PGPHGAPGDPGPTGLK 995
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/170 (25%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGN---PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG+ G GE G G G GPPGR+G+ G G
Sbjct: 500 PGLKGEMGEMGPQGPRGLQGPHGPPGREGKMGRAGADGARGLPGATGPKGDRGFDGLPGL 559
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK---GPRGLPGLKGHNGL 346
+ G RG+ G G+ GEPG + GPRG PG G G+
Sbjct: 560 PGEKGQRGDFGYVGKPGPPGEDGRKGAEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRPGV 619
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G G PG GP G
Sbjct: 620 IGSDGAPGAKGNVGPPGEPGPPGQQGNPGSQGIPGPQGPIGTPGEKGPPG 669
Score = 52.8 bits (125), Expect = 7e-07
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG +G G PG P G+DG GH G+R +
Sbjct: 872 PGLQGPPGFSGPKGPPG---PQGKDGVPGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGE 928
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGH---NGLQGL 355
G GE +G +G+ G G G G PG +G +G G
Sbjct: 929 AGPLGERGPPGPPGPPGEQGLPGLEGREGAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGD 988
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G GD+ G GQ G GP G
Sbjct: 989 PGPTGLKGDKGPPGPVGANGSPGERGPVGPAGSIGLPGQSGGQGPVG 1035
>ref|NP_001039664.1| collagen alpha-2(XI) chain precursor [Bos taurus].
Length = 1736
Score = 133 bits (335), Expect = 3e-31
Identities = 124/455 (27%), Positives = 170/455 (37%), Gaps = 21/455 (4%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NG PG G+ G G+ GP GR G+ G KG+
Sbjct: 1309 GENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLR 1368
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL---------KGHN 340
G G G+ G +G+ G KG +G PGL +G
Sbjct: 1369 GLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEK 1428
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXX 520
G +GLPG G G + G G GA GPAG +
Sbjct: 1429 GDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQ 1488
Query: 521 XXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQ----------PRSPPSLRPKDYEVD 670
D R Q P SP L E+
Sbjct: 1489 GPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAVPTGGAPGSPGGLE----EIF 1544
Query: 671 ATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCD 850
+L SL +IE + P G++ +PARTC+DL+L HPE G YW+DPNQGC DA +V+C+
Sbjct: 1545 GSLDSLREEIEQMRRPMGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCN 1604
Query: 851 FST-GETCIRAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEY-NMEGVTTKEMATQL 1024
F+ GETC+ + + TQF Y + EG QL
Sbjct: 1605 FTAGGETCVTPRDD-------------------------VTQFSYVDSEGAPVG--VVQL 1637
Query: 1025 AFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLV 1204
F+RLL+ A QNI+Y C + + LK L+G+N+ EL E + +
Sbjct: 1638 TFLRLLSVSARQNISYPCSG-----EAQDSPLK----LRGANEDELSPETSPYI--KEIR 1686
Query: 1205 DGCSKKTMNGEKHHFDINK*PSRLPILDIAPLDIG 1309
DGC +T G +LP+LD + ++G
Sbjct: 1687 DGC--QTQQGRTVLEVRTPVLEQLPVLDASFSELG 1719
Score = 65.5 bits (158), Expect = 1e-10
Identities = 48/164 (29%), Positives = 56/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AG DG+ G G PG+ G G+KGE
Sbjct: 1071 PGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGE--------------------------- 1103
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
HG G +G +G G GD+G RG G G GLQGLPG
Sbjct: 1104 HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGP 1163
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G G+ DG G PG VG G
Sbjct: 1164 SGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLG 1207
Score = 65.1 bits (157), Expect = 1e-10
Identities = 45/172 (26%), Positives = 57/172 (33%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+PG +GPPG G G G + +
Sbjct: 678 PGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGIKGVDGIRGLKGHKGE 737
Query: 185 HGN------RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +G+ +G +G G GD GP GL G KG G+
Sbjct: 738 KGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV 797
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GLPG G G + K G G+ G GP G R
Sbjct: 798 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQR 849
Score = 63.2 bits (152), Expect = 5e-10
Identities = 50/163 (30%), Positives = 55/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G PG GR G GS G PG G +G KG R
Sbjct: 796 GVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPT------------ 843
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG+ G GE+G PG +GP G PG KG G G GL
Sbjct: 844 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLP 903
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G + K G G PG VGP G
Sbjct: 904 GHPGQR---------------GEVGFQGKTGPPGPPGVVGPQG 931
Score = 63.2 bits (152), Expect = 5e-10
Identities = 49/174 (28%), Positives = 57/174 (32%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGAPGE---------AGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXX 154
+PG G PGE G G+PG G PG+DG AG +G
Sbjct: 944 HPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG 1003
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G+ GE G GEKG PG+KGP G G G
Sbjct: 1004 NEGPAGPPGPAGSPGERGSAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG 1063
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GLPG AG G + G G PG +GP G
Sbjct: 1064 VQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPIGPVG 1117
Score = 62.4 bits (150), Expect = 9e-10
Identities = 46/163 (28%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PG+AGR G G+DG G G+ G KG+R
Sbjct: 526 GLMGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPP 585
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE G G +G PG+ GPRGL G KG G+ G PG+
Sbjct: 586 GEDGERGD------------------DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVR 627
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G GA+GP G
Sbjct: 628 GMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 670
Score = 61.6 bits (148), Expect = 2e-09
Identities = 50/185 (27%), Positives = 60/185 (32%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG G +G PG GPPG +DG GH G+R
Sbjct: 873 PGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGA 932
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG---DKGPRGL--------- 319
+ G GE +G +G+ G PG GP GL
Sbjct: 933 AGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGL 992
Query: 320 ------PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
PGLKG+ G G PG AG G++ G G PG
Sbjct: 993 PGTAGGPGLKGNEGPAGPPGPAGSPGERGSAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 1052
Query: 482 VGPAG 496
GP G
Sbjct: 1053 KGPIG 1057
Score = 59.7 bits (143), Expect = 6e-09
Identities = 41/163 (25%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G PG+ G PG G G GE+
Sbjct: 640 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEK--------------------------- 672
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG+ G +G +G G +GP G PG +G G+ G+ GL
Sbjct: 673 GPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGIKGVDGIRGLK 732
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G++ G G+ G GP G
Sbjct: 733 GHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKG 775
Score = 59.3 bits (142), Expect = 8e-09
Identities = 48/178 (26%), Positives = 55/178 (30%), Gaps = 12/178 (6%)
Frame = +2
Query: 2 NPGVNGAPG---------EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXX 154
+PGV G PG E G G G GPPG G G G +
Sbjct: 1220 SPGVQGEPGVKGPRGERGEKGETGQAGEAGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPG 1279
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G+RGE G RG G PG +G +G G KG
Sbjct: 1280 EVGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKG 1339
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G PG G G + G TGQ PG VGP G+
Sbjct: 1340 DPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1397
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/168 (26%), Positives = 54/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G+ GH+G+
Sbjct: 544 GARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLP 603
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG-- 361
G G G G KG G +G G PG +G G QGLPG
Sbjct: 604 GESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQ 663
Query: 362 -LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G HG++ DG G PG GP G +
Sbjct: 664 GAIGPHGEKGPRGKPGLPGMPG---------SDGPPGHPGKEGPPGTK 702
Score = 57.0 bits (136), Expect = 4e-08
Identities = 45/168 (26%), Positives = 54/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G GE G G+PG G PG G G +GE+
Sbjct: 1205 NLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKG------------------------ 1240
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLK---GHNGLQG 352
+ G GE G G+ G PG+ GPRG G K G +G G
Sbjct: 1241 ETGQAGEAGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEPG 1300
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G+ + G G PGAVG G
Sbjct: 1301 QPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPG 1348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,794,347
Number of extensions: 866332
Number of successful extensions: 20650
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 9689
Number of HSP's successfully gapped: 394
Length of query: 453
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,174,046
Effective search space: 4918393962
Effective search space used: 4918393962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012837
(1359 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230584.1| collagen, type I, alpha 2 [Sus scrofa]. 654 0.0
Alignment gi|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa]. 340 1e-93
Alignment gi|XP_003361043.1| PREDICTED: collagen alpha-1(II) chain-like, ... 318 2e-87
Alignment gi|XP_003362102.1| PREDICTED: LOW QUALITY PROTEIN: collagen alp... 310 2e-84
Alignment gi|NP_001098759.1| collagen alpha-2(V) chain [Sus scrofa]. 303 6e-83
Alignment gi|XP_003355326.1| PREDICTED: collagen alpha-1(XI) chain isofor... 180 1e-45
Alignment gi|XP_001929407.3| PREDICTED: collagen alpha-1(XI) chain isofor... 180 1e-45
Alignment gi|XP_003355328.1| PREDICTED: collagen alpha-1(XI) chain isofor... 180 1e-45
Alignment gi|XP_003355327.1| PREDICTED: collagen alpha-1(XI) chain isofor... 180 1e-45
Alignment gi|NP_001098758.1| collagen alpha-3(V) chain [Sus scrofa]. 167 1e-41
>ref|NP_001230584.1| collagen, type I, alpha 2 [Sus scrofa].
Length = 1366
Score = 654 bits (1687), Expect = 0.0
Identities = 331/439 (75%), Positives = 333/439 (75%), Gaps = 2/439 (0%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGER
Sbjct: 914 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERGYPGNPGPAGAAGAPGPQGAVGPAG 973
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
KHGNRGE QGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG
Sbjct: 974 KHGNRGEPGPAGSVGPAGAVGPRGPSGPQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 1033
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXX 541
LAGHHGDQ KDGRTGQPGAVGPAGIR
Sbjct: 1034 LAGHHGDQGAPGPVGPAGPRGPAGPSGPAGKDGRTGQPGAVGPAGIRGSQGSQGPAGPPG 1093
Query: 542 XXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPE 721
YDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPE
Sbjct: 1094 PPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPE 1153
Query: 722 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA 901
GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA
Sbjct: 1154 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA 1213
Query: 902 KNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCK 1081
KNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCK
Sbjct: 1214 KNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCK 1273
Query: 1082 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGEKH--HFDI 1255
NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT K +
Sbjct: 1274 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKT 1333
Query: 1256 NK*PSRLPILDIAPLDIGE 1312
NK PSRLPILDIAPLDIG+
Sbjct: 1334 NK-PSRLPILDIAPLDIGD 1351
Score = 65.1 bits (157), Expect = 9e-11
Identities = 48/165 (29%), Positives = 56/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPG NG PG G G PG G PG G G G
Sbjct: 299 NPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPA------- 351
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G++GE +G RG GE G GP G PGL+G+ G +GLPG
Sbjct: 352 --GSKGESGNKGEPGAAGPQGPPGPSGEEGKRGPNGEVGSAGPPGPPGLRGNPGSRGLPG 409
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G GR G+PG +GP G
Sbjct: 410 ADGRAG---VMGPPGSRGPTGPAGVRGPNGDSGRPGEPGLMGPRG 451
Score = 57.8 bits (138), Expect = 1e-08
Identities = 48/168 (28%), Positives = 54/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AGR G PG GPPG G AG +G R
Sbjct: 783 PGATGFPGAAGRIGPPGPSGISGPPGPPGPAGKEGLR----------------------- 819
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G RG+ G GEKG G+ G G PG G G+ G
Sbjct: 820 ----GPRGD------QGPVGRTGETGASGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGA 869
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
PG G G + G G PGAVG G+
Sbjct: 870 PGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGNPGV 917
Score = 57.4 bits (137), Expect = 2e-08
Identities = 47/172 (27%), Positives = 53/172 (30%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ GA G G DGN G+ GPPG G G KGE+ +
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGER 573
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G GE G G G G GP G G KG G+ G P
Sbjct: 574 GIPGEFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTA 633
Query: 359 ------GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GL G G +DG G PGAVG G
Sbjct: 634 GPSGPSGLPGERGAAGIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPG 685
Score = 55.5 bits (132), Expect = 7e-08
Identities = 45/164 (27%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G G G G PG+ G AG +G K
Sbjct: 102 PGAVGAPGPQGFQGPAGEPGEPGQTGPAGARG------------PPGPPGKAGEDGHPGK 149
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G +G +G PG G G G++GHNGL GL G
Sbjct: 150 PGRPGERGVV------------------GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQ 191
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + GR G PG G G
Sbjct: 192 PGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 235
Score = 55.1 bits (131), Expect = 9e-08
Identities = 45/164 (27%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GA G AG G+ G GPPG DG G G
Sbjct: 594 PGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAAGIPGG 653
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G+RG+ G PG G RG P G G PG
Sbjct: 654 KGEKGE---------------------TGLRGDVGSPGRDGARGAP------GAVGAPGP 686
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG +GD+ + G G G GPAG
Sbjct: 687 AGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
>ref|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa].
Length = 1466
Score = 340 bits (872), Expect = 1e-93
Identities = 195/452 (43%), Positives = 240/452 (53%), Gaps = 17/452 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ GA GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 1002 PGLAGAAGEPGRDGNPGSDGLPGRDGAPGSKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1061
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1062 NGDRGETGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGANGIKGHRGFPGNPGAPGS 1121
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1122 PGPAGHQGAVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGH 1181
Query: 545 XXXXXXXXXXXXX-----------YDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATL 679
G E G F Y D+P + E+ +L
Sbjct: 1182 PGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKAGGFAPYYGDEPMD---FKINTDEIMTSL 1238
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST 859
KS+N QIE+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC MDAIKV+C+ T
Sbjct: 1239 KSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMET 1298
Query: 860 GETCIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMR 1036
GETCI A P +P KNW+ +S KK+VW GE++NGG QF Y + + QLAF+R
Sbjct: 1299 GETCISASPSTVPRKNWWTDSGAEKKYVWFGESMNGGFQFSYGNPELPEDVLDVQLAFLR 1358
Query: 1037 LLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCS 1216
LL++ ASQNITYHCKNSIAYM+ +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC+
Sbjct: 1359 LLSSRASQNITYHCKNSIAYMEHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCT 1418
Query: 1217 KKTMNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K T K F+ + RLPI+DIAP DIG
Sbjct: 1419 KHTGEWGKTVFEYRTRKAVRLPIVDIAPYDIG 1450
Score = 65.5 bits (158), Expect = 7e-11
Identities = 47/164 (28%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG+ G G PG +G G G G +GE
Sbjct: 420 PGTNGAPGQRGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGL 479
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE +G GE+G PG GPRG+ G G +G+ G PGL
Sbjct: 480 PGAAGE---RGMPGFRGAPGANGLPGEKGPAGERGGPGPAGPRGVAGEPGRDGVPGGPGL 536
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + GR G PG+ GP G
Sbjct: 537 RGMPGS------PGGPGSDGKPGPPGSQGESGRPGPPGSPGPRG 574
Score = 65.5 bits (158), Expect = 7e-11
Identities = 47/166 (28%), Positives = 56/166 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G+ GE+GR G PGS GP G+ G G G + K
Sbjct: 552 PGPPGSQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPPGK 611
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G G QG++G G G G G PG G G G PG+
Sbjct: 612 NGETGPQGPPGPTGPGGDKGDTGPPGQQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGI 671
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G G PGAVGP+G R
Sbjct: 672 PGGKGDS---------------------GAPGERGPPGAVGPSGPR 696
Score = 65.1 bits (157), Expect = 9e-11
Identities = 48/164 (29%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G+PG GPPG GQAG G +
Sbjct: 183 PGPPGVSGHPGAPGSPGYQGPPGEPGQAGPAGP------PGPPGAIGPSGPAGKDGESGR 236
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE +G RG G G+KG G PGLKG NGL G G
Sbjct: 237 PGRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGA 296
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G GQPG GP G
Sbjct: 297 PGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 340
Score = 62.0 bits (149), Expect = 7e-10
Identities = 48/172 (27%), Positives = 59/172 (34%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G G PGE G G PG G PG++G+ G KGER
Sbjct: 793 GPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP--------------------- 831
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHN 340
G +GE QG++GE+G PG G RGLPG G N
Sbjct: 832 ---GEKGEGGPPGIAGQPGGTGPPGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGSN 888
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G PG +G G G+ G+ G+ GP G
Sbjct: 889 GNPGPPGSSGPPGKDGPPGPPGSSGAPGSPGVSGPKGDAGQPGEKGSPGPQG 940
Score = 60.5 bits (145), Expect = 2e-09
Identities = 48/173 (27%), Positives = 56/173 (32%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G G GPPG +G G KGE
Sbjct: 365 SPGQRGEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPGTNG 424
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNG 343
G RG G G KGEPG +G R G+PG KG +G
Sbjct: 425 APGQRG------------------AAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDG 466
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PG G +G + G G+ G GPAG R
Sbjct: 467 KDGSPGEPGANGLPGAAGERGMPGFRGAPGANGLPGEKGPAGERGGPGPAGPR 519
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/177 (26%), Positives = 58/177 (32%), Gaps = 12/177 (6%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXX 145
+PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 197 SPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGLKGPAG 256
Query: 146 XXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG 325
G GE G+ GE G PG GPRG PG
Sbjct: 257 MPGFPGMKGHRGFDGRNGE---------KGDTGAPGLKGENGLPGENGAPGPMGPRGAPG 307
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + G G G+ GP+G
Sbjct: 308 ERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGPSG 364
Score = 58.2 bits (139), Expect = 1e-08
Identities = 47/185 (25%), Positives = 56/185 (30%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G G+ G PG G +G GER
Sbjct: 651 PGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAVGPSGPRGGAGPPGPEGGKGP 710
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KG+PG G
Sbjct: 711 AGPPGPPGAAGTPGLQGMPGERGGSGGPGPKGDKGDPGGSGADGAPGKDGPRGPTGPIGP 770
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG +G GLPG+AG G + G G+ GA
Sbjct: 771 PGPAGQPGDKGESGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 830
Query: 482 VGPAG 496
G G
Sbjct: 831 PGEKG 835
Score = 57.0 bits (136), Expect = 2e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PG AG G PG G PG +G G KG
Sbjct: 474 PGANGLPGAAGERGMPGFRGAPGANGLPGEKGPAGERGGPGPAGP--------------- 518
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G G+ G PG +G G PG G G +G PG+
Sbjct: 519 RGVAGEPGRDGVPGGPGLRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGSPGPRGQPGV 578
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G+ G+ G GP G
Sbjct: 579 MGFPGPKGNDGAPGKNGERGGPGGPGLPGPPGKNGETGPQGPPG 622
Score = 55.1 bits (131), Expect = 9e-08
Identities = 44/165 (26%), Positives = 51/165 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G G GR+G G G PG G+ G GE
Sbjct: 261 PGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGA 320
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G G +GE G G GP G PG +G G QG G
Sbjct: 321 RGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGPSGSPGQRGEPGPQGHAGA 380
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
AG G +G G G +GPAGI
Sbjct: 381 AGPPG---------------------PPGSNGSPGGKGEMGPAGI 404
Score = 53.1 bits (126), Expect = 3e-07
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PGV+G G+AG+ PG G PG G G G
Sbjct: 917 SPGVSGPKGDAGQ---PGEKGSPGPQGPPGAPG--------------------------- 946
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G G QG++GE G+P GP GL G +G G QGLPG
Sbjct: 947 PGGISGITGARGLAGPPGMPGARGSPGPQGVKGENGKP---GPSGLNGERGPPGPQGLPG 1003
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
LAG G+ G G PGA G G
Sbjct: 1004 LAGAAGEPGRDGNPGSDGLPGRDGAPGSKGDRGENGSPGAPGAPG 1048
>ref|XP_003361043.1| PREDICTED: collagen alpha-1(II) chain-like, partial [Sus scrofa].
Length = 1540
Score = 318 bits (815), Expect(2) = 2e-87
Identities = 189/470 (40%), Positives = 230/470 (48%), Gaps = 35/470 (7%)
Frame = +2
Query: 5 PGVNGAPGEAG---------------------RDGNPGSDGPPGRDGQAGHKGERXXXXX 121
PG GAPG +G G+PG+DGPPGRDG AG KG+R
Sbjct: 1058 PGKQGAPGASGDRGPPGPVGPPGLTXXAPFPFAQGSPGADGPPGRDGAAGVKGDRGETGA 1117
Query: 122 XXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD 301
K G+RG QG RG+KGE G+
Sbjct: 1118 AGAPGAPGPPGSPGPAGPTGKQGDRGPQGAQGPMGPAGPAGARGMPGPQGPRGDKGEAGE 1177
Query: 302 KGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
G RGL G +G GLQGLPG G GDQ KDG G PG
Sbjct: 1178 AGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP 1237
Query: 482 VGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG------------YEGDFYRADQ 625
+GP G R D + + RAD+
Sbjct: 1238 IGPPGPRGRSGETGPAGPPGTPGPPGPPGPPGPGIDMSAFAGXXXXXXGPHPLQYMRADE 1297
Query: 626 PRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWID 805
+LR D EVDATLKS + +PEGSRKNPARTCRD+ P +G YWID
Sbjct: 1298 AAG--NLRQHDAEVDATLKSXXXXXXXIRSPEGSRKNPARTCRDMGCCLPP-PAGDYWID 1354
Query: 806 PNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEY 982
PNQGCT+DA+KV+C+ P ++P KNW+ + SK KKH+W GETINGG F Y
Sbjct: 1355 PNQGCTLDAMKVFCNMXXXXXXXXXSPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSY 1414
Query: 983 NMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVEL 1162
+ + Q+ F+RLL+ SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+
Sbjct: 1415 GDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEI 1474
Query: 1163 VAEGNSRFTYTVLVDGCSKKTMNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
AEGNSRFTYTVL DGC+ ++ SRLPI+DIAP+DIG
Sbjct: 1475 RAEGNSRFTYTVLKDGCTVSQAGWVTRAMSYRSQKTSRLPIIDIAPMDIG 1524
Score = 23.9 bits (50), Expect(2) = 2e-87
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+Q+ VD+GPVCF
Sbjct: 1527 EQEFGVDIGPVCF 1539
Score = 64.3 bits (155), Expect = 1e-10
Identities = 48/165 (29%), Positives = 57/165 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G+PG AG GNPG+DG PG G AG G
Sbjct: 478 PGNPGSPGPAGASGNPGTDGIPGAKGSAGAPG---IAGAPGFPGPRGPPGPQGATGPLGP 534
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE +G RG +GEPG GP G PG +G G +G PG
Sbjct: 535 KGQTGEPGIAGFKGEQGPKGEPGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQ 594
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G + GR G+PG G G+
Sbjct: 595 DGLAGPK--VSGGTGPGVSPCITSQMASADPGRPGEPGLPGARGL 637
Score = 61.2 bits (147), Expect = 1e-09
Identities = 47/165 (28%), Positives = 56/165 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AGR G PGS+G PG G G G K
Sbjct: 947 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG---------------------------K 979
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +G G +GE GE G GP G PG +G G +G+ GL
Sbjct: 980 DGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGEDGPSGPDGPPGPQGLAGQRGIVGL 1039
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G++ G G PG VGP G+
Sbjct: 1040 PGQRGER---GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGL 1081
Score = 59.7 bits (143), Expect = 4e-09
Identities = 51/177 (28%), Positives = 63/177 (35%), Gaps = 14/177 (7%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSD---GPPGRDGQA--------GHKGERXXXXXXXXXXXXXXXX 154
G NG PG+AG G PG+ G PG+DG+ G GER
Sbjct: 684 GANGEPGKAGEKGLPGAPGLRGLPGKDGETXXXXXXXXGPAGERGEQGAPGPSGFQGLPG 743
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPG 325
K G++G +G GE+G PG +GPRGLPG
Sbjct: 744 PPGAPGEGGKPGDQGVPGEAGAPGLXGAPGLVGPRGERGFPGERGSPGSQGLQGPRGLPG 803
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G +G G AG G KDG G G +GP G
Sbjct: 804 TPGTDGPKGASGPAGPPGGD-----------VGEKGPEGAPGKDGGRGLTGPIGPPG 849
Score = 55.5 bits (132), Expect = 7e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG++GA GEAG G G G PG +G G G R
Sbjct: 376 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA--------- 426
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G+ G +GE G G +GP G G +G G G PG
Sbjct: 427 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGP 486
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ G G PG G G
Sbjct: 487 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG 530
Score = 55.5 bits (132), Expect = 7e-08
Identities = 47/175 (26%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G++
Sbjct: 879 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK--------------------------- 911
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +G G PG +GP G+ G KG G QG PG
Sbjct: 912 GDAG---------------------APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 950
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKD------------GRTGQPGAVGPAG 496
G G KD GR G PG GPAG
Sbjct: 951 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAG 1005
Score = 54.7 bits (130), Expect = 1e-07
Identities = 45/172 (26%), Positives = 51/172 (29%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G AG G
Sbjct: 789 SPGSQGLQGPRGLPGTPGTDGPKGASGPAGPPG--------------------------G 822
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 823 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETG 882
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 883 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 934
Score = 48.5 bits (114), Expect = 8e-06
Identities = 26/77 (33%), Positives = 31/77 (40%)
Frame = +2
Query: 269 GIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXX 448
G GE G+PG G RG PG +G G G PGL G G +
Sbjct: 335 GDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 394
Query: 449 XKDGRTGQPGAVGPAGI 499
G G PG +GP G+
Sbjct: 395 GSPGENGSPGPMGPRGL 411
>ref|XP_003362102.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(I) chain [Sus
scrofa].
Length = 1317
Score = 310 bits (793), Expect = 2e-84
Identities = 182/448 (40%), Positives = 230/448 (51%), Gaps = 14/448 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G AG G PG+ G PG G AG G+R
Sbjct: 907 GDRGESGPAGPPGAPGAPGAPGPVGPAGKSGDRGEXRLWLAGPAGPAGPVGPV------- 959
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG QG RG+KGE G++G RG+ G +G +GLQG PG
Sbjct: 960 GARGPAGP------------------QGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPP 1001
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXX 547
G G+Q KDG G PG +GP G R
Sbjct: 1002 GSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTG----------- 1050
Query: 548 XXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGS 727
D G YRAD +R +D EVD TLKSL+ QIE + +PEGS
Sbjct: 1051 -------------DAGPVXXXYRADDANV---VRDRDLEVDTTLKSLSQQIENIRSPEGS 1094
Query: 728 RKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKN 907
RKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+ ++P KN
Sbjct: 1095 RKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVPQKN 1154
Query: 908 WY--RNSKVKKHVWLGETINGGTQFE----YNMEGVTTKEMATQLAFMRLLANHASQNIT 1069
WY +N K K+HVW GE++ G Q +G+ +RL++ ASQNIT
Sbjct: 1155 WYISKNPKDKRHVWYGESMTDGFQVRELEPLFQDGLAQGSTGXXXXXLRLMSTEASQNIT 1214
Query: 1070 YHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMN------ 1231
YHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+V+ DGC+
Sbjct: 1215 YHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVIYDGCTVSPAGPPFIGL 1274
Query: 1232 --GEKHHFDINK*PSRLPILDIAPLDIG 1309
+ K SRLPI+D+APLD+G
Sbjct: 1275 WXXXXIEYKTTK-TSRLPIIDVAPLDVG 1301
Score = 63.2 bits (152), Expect = 3e-10
Identities = 50/172 (29%), Positives = 57/172 (33%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G G PG G PG G G +G K
Sbjct: 175 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRG---------------------PPGPPGK 213
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGL 346
+G+ GE G GE+G PG +G R GLPG+KGH G
Sbjct: 214 NGDDGE------------------AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGF 255
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GL G G G G G+PG GPAG R
Sbjct: 256 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGPAGAR 307
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/164 (27%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG GEAG+ G PG GPPG G G G
Sbjct: 211 PGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAK-------- 262
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ G +G+ GE+G PG GP G G G G G PG
Sbjct: 263 -GDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGPAGARGNDGATGAAGPPGP 321
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+PG GPAG
Sbjct: 322 TGPAGPPGFPGAVGAKGEAGPQGARGSEGPQGVRGEPGPPGPAG 365
Score = 59.3 bits (142), Expect = 5e-09
Identities = 42/164 (25%), Positives = 49/164 (29%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA G+AG G G GPPG G G G +
Sbjct: 711 GQPGAKGDAGPPGPAGPTGPPGPIGSVGAPGPKGSPRPVIGGRGSRGPGNAGPPGPPGPA 770
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G GEKG PG GP G PG G G+ G G+
Sbjct: 771 GKEGSKGPRGETGPAGRPGEAGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVV 830
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G + G G PG +GP G+
Sbjct: 831 GLPGQRGERGFPGLPGPSGEPGKQGPSGPSGERGPPGPMGPPGL 874
Score = 57.8 bits (138), Expect = 1e-08
Identities = 53/164 (32%), Positives = 59/164 (35%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PGEAG+ G G G G G +G +GER
Sbjct: 559 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFP----------------------- 595
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG G G G PG +G GL G+ G G GLPG
Sbjct: 596 -GERGVQGPPGPAGPRGANGXXXXXXXXGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 654
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD KDG G G +GP G
Sbjct: 655 KGDRGD------------AGPKGADGAPGKDGVRGLTGPIGPPG 686
Score = 52.4 bits (124), Expect = 6e-07
Identities = 52/170 (30%), Positives = 59/170 (34%), Gaps = 5/170 (2%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPP---GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG +G G G G GS GP G G+AG GE
Sbjct: 482 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGTGAQGPPGPAGPA 541
Query: 176 XXK--HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ 349
+ G G QG+ G+ G PG G RG G G G+Q
Sbjct: 542 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 601
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G PG AG G G G PG G AG+
Sbjct: 602 GPPGPAGPRGANGXXXXXXXXGDAGAPGAPGSQGAPGLQGMPGERGAAGL 651
>ref|NP_001098759.1| collagen alpha-2(V) chain [Sus scrofa].
Length = 1499
Score = 303 bits (775), Expect(2) = 6e-83
Identities = 180/448 (40%), Positives = 231/448 (51%), Gaps = 13/448 (2%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG GE G +G G+DG PGRDG G +G+R
Sbjct: 1037 PGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSRGAPGTPGPVGAPGD 1096
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG+ QG RG+KG+ GD+G RG G +G GLQGLPG
Sbjct: 1097 AGQRGDPGSRGPIGPPGRAGKRGLLGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGP 1156
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G +G+Q K+G G G VGP G+R
Sbjct: 1157 PGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPVGPPGVRGSVGEAGPEGPPGE 1216
Query: 545 XXXXXXXXXXXXX----------YDFGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLN 691
YD + ++ P + K D V ATLKSL+
Sbjct: 1217 PGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLS 1276
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
+QIET+ +P+GS+K+PARTC DL+L H SG YWIDPNQG DAIKVYC+ TGETC
Sbjct: 1277 SQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSAEDAIKVYCNMETGETC 1336
Query: 872 IRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLAN 1048
I A P +IP K W+ + S K VW G +N G+QF Y + + TQ+ F+RLL+
Sbjct: 1337 ISANPYSIPRKMWWASKSPDYKPVWYGLDMNRGSQFVYG-DHQSPNAAITQMTFLRLLSK 1395
Query: 1049 HASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTM 1228
ASQNITY CKNS+ YMD++ NLKKAV+L+GSND+E+ AEGN RF YTVL D CSK+
Sbjct: 1396 EASQNITYICKNSVGYMDDQAKNLKKAVVLKGSNDLEIKAEGNVRFRYTVLHDTCSKRNG 1455
Query: 1229 NGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
N K F+ + +RLPI+D+AP+D+G
Sbjct: 1456 NVGKTIFEYRTQNVARLPIIDLAPVDVG 1483
Score = 23.9 bits (50), Expect(2) = 6e-83
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
DQ+ V++GPVCF
Sbjct: 1486 DQEFGVEIGPVCF 1498
Score = 65.1 bits (157), Expect = 9e-11
Identities = 47/164 (28%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PGE G+ G+ G G PG G G +GER
Sbjct: 680 PGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNP----------------------- 716
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RGE +G G G PGD GP GL G+ G G+ G PG
Sbjct: 717 -GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 775
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG G PG +GP G
Sbjct: 776 KGDRG------------GIGEKGAEGTAGNDGARGLPGPLGPPG 807
Score = 62.4 bits (150), Expect = 6e-10
Identities = 47/173 (27%), Positives = 57/173 (32%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AGR G PG G PG G G G+
Sbjct: 905 PGATGFPGSAGRVGPPGPTGAPGPAGPLGEPGKEGPP----------------------- 941
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---------RGLPGLKGH 337
G RG+ +G GE G+PG GP RG+ G+ G
Sbjct: 942 -GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 1000
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G+PGL G G +G G+PG GPAG
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAG 1053
Score = 62.0 bits (149), Expect = 7e-10
Identities = 53/186 (28%), Positives = 58/186 (31%), Gaps = 21/186 (11%)
Frame = +2
Query: 8 GVNGAPGEAGRDGN---PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G GA G AG DG PG GPPG G G KGE
Sbjct: 783 GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE---------------PGPRGLVGPP 827
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG----------------- 307
GN G G++GE GEPG KG
Sbjct: 828 GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPH 887
Query: 308 -PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAV 484
P G+PGLKG G QG PG G G G G+PG
Sbjct: 888 GPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPTGAPGPA---------GPLGEPGKE 938
Query: 485 GPAGIR 502
GP G+R
Sbjct: 939 GPPGLR 944
Score = 60.5 bits (145), Expect = 2e-09
Identities = 46/165 (27%), Positives = 58/165 (35%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G+PG+ G PG G G KG R
Sbjct: 269 PGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAT----------- 317
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G++GE +G G +G PG +G G+PG G G G+PG
Sbjct: 318 -GSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGS 376
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G+ + G TG PG VG G+
Sbjct: 377 PGFPGN---PGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGL 418
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/174 (27%), Positives = 59/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNP---GSDGPPGRDGQ------AGHKGERXXXXXXXXXXXXXXXX 154
+PG +G PG AG G+P GS GPPG GQ G KGE
Sbjct: 436 SPGTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIG 495
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G+ G G+ G KG G++GP G G KG
Sbjct: 496 PPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKG 555
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G PG G G + +DGR G PG++G G
Sbjct: 556 GQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRG 609
Score = 59.3 bits (142), Expect = 5e-09
Identities = 46/172 (26%), Positives = 55/172 (31%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G DG PG+ GP G G +G G
Sbjct: 414 GSQGLPGAVGTDGTPGAKGPTGSPGTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVP 473
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQ 349
G +GE +G RG +G+PG GP RG PG +G G
Sbjct: 474 GFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSD 533
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGR---TGQPGAVGPAG 496
GLPG G G++ G TG PG GP G
Sbjct: 534 GLPGPKGAQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEG 585
Score = 58.9 bits (141), Expect = 6e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA G G G PG DG PGR+G G G
Sbjct: 249 GPIGARGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLE 308
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE G RG GE G GP+G PG +G +G+ G PG
Sbjct: 309 GPKGEVGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPM 368
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +G GQ G GP G
Sbjct: 369 GPLGIPGSPGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPG 411
Score = 57.8 bits (138), Expect = 1e-08
Identities = 44/164 (26%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G G +GPPG+ G+ G G
Sbjct: 239 PGEPGEPGPMGPIGARGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 298
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RG G G G G GPRG+PG +G G QG PG
Sbjct: 299 KGHRGH---KGLEGPKGEVGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQ 355
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G HG G G GA GP G
Sbjct: 356 RGAHGMPGKPGPMGPLGIPGSPGFPGNPGMKGEAGPTGARGPEG 399
Score = 57.8 bits (138), Expect = 1e-08
Identities = 49/177 (27%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGEAG G PG G PG+DG+ G G
Sbjct: 624 GDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA--------------------- 662
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---------KGPRGLPGLKGHN 340
G RGE G G++G PGD +G RG PG +G
Sbjct: 663 GERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEP 722
Query: 341 GLQGLPG---LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G+ GLPG +AG HG G +G PG GP G++
Sbjct: 723 GITGLPGEKGMAGGHGPDGPKG------------------SPGPSGTPGDTGPPGLQ 761
Score = 57.8 bits (138), Expect = 1e-08
Identities = 45/170 (26%), Positives = 52/170 (30%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG GR G+ G GPPG G G GE +
Sbjct: 941 PGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 1000
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG +G G G PG GP G PG +G G G PG
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGR 1060
Query: 365 ------AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD G+ G PG+ GP G
Sbjct: 1061 DGAVGERGDRGDPGPAGLPGSRGAPGTPGPVGAPGDAGQRGDPGSRGPIG 1110
>ref|XP_003355326.1| PREDICTED: collagen alpha-1(XI) chain isoform 2 [Sus scrofa].
Length = 1818
Score = 180 bits (456), Expect(2) = 1e-45
Identities = 137/455 (30%), Positives = 185/455 (40%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1356 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1475
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1476 PGEQGEKGDRGLPGAQGSTGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQ 1535
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1536 KGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESMQADAGDTILDYTDGMEEIFGSL 1595
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1596 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1655
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1656 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1710
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N L DG
Sbjct: 1711 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI--KALYDG 1768
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++P++D+ D G+
Sbjct: 1769 CASR-KGYEKTVIEINTPKIDQVPVVDVMINDFGD 1802
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1804 NQKFGFEVGPVCF 1816
Score = 66.6 bits (161), Expect = 3e-11
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER +
Sbjct: 598 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGED 642
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G G G+PG G G PG KG+ G QG PG
Sbjct: 643 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPP 702
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ K G G PGA GP G
Sbjct: 703 GQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 745
Score = 65.5 bits (158), Expect = 7e-11
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 1005 PGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1064
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1065 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1124
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1125 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1171
Score = 65.1 bits (157), Expect = 9e-11
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 692 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 751
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 752 QSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 811
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 812 EVGQVGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 844
Score = 63.5 bits (153), Expect = 3e-10
Identities = 45/163 (27%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1120 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1158
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1159 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1218
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG++G G
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVG 1261
Score = 61.6 bits (148), Expect = 1e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 723 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGV 782
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 783 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQ 842
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 843 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 902
Query: 500 R 502
R
Sbjct: 903 R 903
Score = 61.2 bits (147), Expect = 1e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 931 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 990
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 991 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQ 1050
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1051 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1099
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1213 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGV--------- 1263
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1264 GEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1323
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1324 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1363
Score = 56.2 bits (134), Expect = 4e-08
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG +GA GE+G G G GPPG G+ G +G
Sbjct: 558 PGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL 617
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G++G G G +G PG+ GPRGL G +G G G
Sbjct: 618 PGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQ 677
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG+AG G G G G +GP G
Sbjct: 678 PGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 724
Score = 55.1 bits (131), Expect = 9e-08
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1254 PGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1313
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1314 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1373
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1374 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1424
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/137 (29%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGN------PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG+ G GN PG GPPG G AG G
Sbjct: 1305 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1364
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G RG +G G+ G G +GP G PG +G G+
Sbjct: 1365 AGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1424
Query: 347 ------QGLPGLAGHHG 379
QGLPG AG G
Sbjct: 1425 PGPVGEQGLPGAAGQDG 1441
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1285 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1344
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1345 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1404
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1405 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1451
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 904 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 963
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 964 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1023
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 1024 GPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1074
Score = 52.4 bits (124), Expect = 6e-07
Identities = 44/165 (26%), Positives = 51/165 (30%), Gaps = 3/165 (1%)
Frame = +2
Query: 11 VNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG 190
+ G PG G G PG G PG G G GE G
Sbjct: 539 LRGPPGPMGLTGRPGPVGGPGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADG 598
Query: 191 NRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN---GLQGLPG 361
RG +G RGE+G G GP G G++G + G +GLPG
Sbjct: 599 GRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPG 658
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G G TGQPG G G
Sbjct: 659 EAGPRG------------------LLGPRGTPGPTGQPGIAGVDG 685
>ref|XP_001929407.3| PREDICTED: collagen alpha-1(XI) chain isoform 1 [Sus scrofa].
Length = 1806
Score = 180 bits (456), Expect(2) = 1e-45
Identities = 137/455 (30%), Positives = 185/455 (40%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1344 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1463
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1464 PGEQGEKGDRGLPGAQGSTGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQ 1523
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1524 KGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESMQADAGDTILDYTDGMEEIFGSL 1583
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1584 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1643
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1644 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1698
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N L DG
Sbjct: 1699 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI--KALYDG 1756
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++P++D+ D G+
Sbjct: 1757 CASR-KGYEKTVIEINTPKIDQVPVVDVMINDFGD 1790
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1792 NQKFGFEVGPVCF 1804
Score = 66.6 bits (161), Expect = 3e-11
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER +
Sbjct: 586 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGED 630
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G G G+PG G G PG KG+ G QG PG
Sbjct: 631 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPP 690
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ K G G PGA GP G
Sbjct: 691 GQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 733
Score = 65.5 bits (158), Expect = 7e-11
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 993 PGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1052
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1053 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1112
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1113 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1159
Score = 65.1 bits (157), Expect = 9e-11
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 680 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 739
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 740 QSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 799
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 800 EVGQVGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 832
Score = 63.5 bits (153), Expect = 3e-10
Identities = 45/163 (27%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1108 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1146
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1147 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1206
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG++G G
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVG 1249
Score = 61.6 bits (148), Expect = 1e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 711 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGV 770
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 771 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQ 830
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 831 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 890
Query: 500 R 502
R
Sbjct: 891 R 891
Score = 61.2 bits (147), Expect = 1e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 919 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 978
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 979 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQ 1038
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1039 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1087
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1201 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGV--------- 1251
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1252 GEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1311
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1312 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1351
Score = 56.2 bits (134), Expect = 4e-08
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG +GA GE+G G G GPPG G+ G +G
Sbjct: 546 PGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL 605
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G++G G G +G PG+ GPRGL G +G G G
Sbjct: 606 PGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQ 665
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG+AG G G G G +GP G
Sbjct: 666 PGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 712
Score = 55.1 bits (131), Expect = 9e-08
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1242 PGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1301
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1302 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1361
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1362 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1412
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/137 (29%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGN------PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG+ G GN PG GPPG G AG G
Sbjct: 1293 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1352
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G RG +G G+ G G +GP G PG +G G+
Sbjct: 1353 AGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1412
Query: 347 ------QGLPGLAGHHG 379
QGLPG AG G
Sbjct: 1413 PGPVGEQGLPGAAGQDG 1429
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1273 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1332
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1333 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1392
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1393 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1439
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 892 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 951
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 952 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1011
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 1012 GPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1062
Score = 52.4 bits (124), Expect = 6e-07
Identities = 44/165 (26%), Positives = 51/165 (30%), Gaps = 3/165 (1%)
Frame = +2
Query: 11 VNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG 190
+ G PG G G PG G PG G G GE G
Sbjct: 527 LRGPPGPMGLTGRPGPVGGPGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADG 586
Query: 191 NRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN---GLQGLPG 361
RG +G RGE+G G GP G G++G + G +GLPG
Sbjct: 587 GRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPG 646
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G G TGQPG G G
Sbjct: 647 EAGPRG------------------LLGPRGTPGPTGQPGIAGVDG 673
>ref|XP_003355328.1| PREDICTED: collagen alpha-1(XI) chain isoform 4 [Sus scrofa].
Length = 1767
Score = 180 bits (456), Expect(2) = 1e-45
Identities = 137/455 (30%), Positives = 185/455 (40%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1305 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1424
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1425 PGEQGEKGDRGLPGAQGSTGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQ 1484
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1485 KGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESMQADAGDTILDYTDGMEEIFGSL 1544
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1545 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1604
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1605 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1659
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N L DG
Sbjct: 1660 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI--KALYDG 1717
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++P++D+ D G+
Sbjct: 1718 CASR-KGYEKTVIEINTPKIDQVPVVDVMINDFGD 1751
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1753 NQKFGFEVGPVCF 1765
Score = 66.6 bits (161), Expect = 3e-11
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER +
Sbjct: 547 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGED 591
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G G G+PG G G PG KG+ G QG PG
Sbjct: 592 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPP 651
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ K G G PGA GP G
Sbjct: 652 GQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 694
Score = 65.5 bits (158), Expect = 7e-11
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 954 PGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1013
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1014 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1073
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1074 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1120
Score = 65.1 bits (157), Expect = 9e-11
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 641 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 700
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 701 QSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 760
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 761 EVGQVGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 793
Score = 63.5 bits (153), Expect = 3e-10
Identities = 45/163 (27%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1069 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1107
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1108 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1167
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG++G G
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVG 1210
Score = 61.6 bits (148), Expect = 1e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 672 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGV 731
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 732 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQ 791
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 792 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 851
Query: 500 R 502
R
Sbjct: 852 R 852
Score = 61.2 bits (147), Expect = 1e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 880 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 939
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 940 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQ 999
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1000 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1048
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1162 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGV--------- 1212
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1213 GEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1272
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1273 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1312
Score = 56.2 bits (134), Expect = 4e-08
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG +GA GE+G G G GPPG G+ G +G
Sbjct: 507 PGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL 566
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G++G G G +G PG+ GPRGL G +G G G
Sbjct: 567 PGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQ 626
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG+AG G G G G +GP G
Sbjct: 627 PGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 673
Score = 55.1 bits (131), Expect = 9e-08
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1203 PGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1262
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1263 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1322
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1323 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1373
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/137 (29%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGN------PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG+ G GN PG GPPG G AG G
Sbjct: 1254 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1313
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G RG +G G+ G G +GP G PG +G G+
Sbjct: 1314 AGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1373
Query: 347 ------QGLPGLAGHHG 379
QGLPG AG G
Sbjct: 1374 PGPVGEQGLPGAAGQDG 1390
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1234 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1293
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1294 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1353
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1354 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1400
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 853 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 912
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 913 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 972
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 973 GPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1023
Score = 52.4 bits (124), Expect = 6e-07
Identities = 44/165 (26%), Positives = 51/165 (30%), Gaps = 3/165 (1%)
Frame = +2
Query: 11 VNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG 190
+ G PG G G PG G PG G G GE G
Sbjct: 488 LRGPPGPMGLTGRPGPVGGPGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADG 547
Query: 191 NRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN---GLQGLPG 361
RG +G RGE+G G GP G G++G + G +GLPG
Sbjct: 548 GRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPG 607
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G G TGQPG G G
Sbjct: 608 EAGPRG------------------LLGPRGTPGPTGQPGIAGVDG 634
>ref|XP_003355327.1| PREDICTED: collagen alpha-1(XI) chain isoform 3 [Sus scrofa].
Length = 1690
Score = 180 bits (456), Expect(2) = 1e-45
Identities = 137/455 (30%), Positives = 185/455 (40%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1228 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1287
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1288 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1347
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1348 PGEQGEKGDRGLPGAQGSTGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQ 1407
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1408 KGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESMQADAGDTILDYTDGMEEIFGSL 1467
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1468 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1527
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1528 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1582
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N L DG
Sbjct: 1583 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPYI--KALYDG 1640
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++P++D+ D G+
Sbjct: 1641 CASR-KGYEKTVIEINTPKIDQVPVVDVMINDFGD 1674
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1676 NQKFGFEVGPVCF 1688
Score = 66.6 bits (161), Expect = 3e-11
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER +
Sbjct: 470 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGED 514
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G G G+PG G G PG KG+ G QG PG
Sbjct: 515 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPP 574
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ K G G PGA GP G
Sbjct: 575 GQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPG 617
Score = 65.5 bits (158), Expect = 7e-11
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 877 PGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 936
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 937 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 996
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 997 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1043
Score = 65.1 bits (157), Expect = 9e-11
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 564 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 623
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 624 QSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 683
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 684 EVGQVGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 716
Score = 63.5 bits (153), Expect = 3e-10
Identities = 45/163 (27%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 992 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1030
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1031 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1090
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG++G G
Sbjct: 1091 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVG 1133
Score = 61.6 bits (148), Expect = 1e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 595 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGV 654
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 655 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQ 714
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 715 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 774
Query: 500 R 502
R
Sbjct: 775 R 775
Score = 61.2 bits (147), Expect = 1e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 803 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 862
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 863 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQ 922
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 923 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 971
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1085 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGV--------- 1135
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1136 GEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1195
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1196 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1235
Score = 56.2 bits (134), Expect = 4e-08
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG +GA GE+G G G GPPG G+ G +G
Sbjct: 430 PGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGL 489
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G++G G G +G PG+ GPRGL G +G G G
Sbjct: 490 PGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPTGQ 549
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG+AG G G G G +GP G
Sbjct: 550 PGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 596
Score = 55.1 bits (131), Expect = 9e-08
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1126 PGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1185
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1186 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1245
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1246 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1296
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/137 (29%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGN------PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG+ G GN PG GPPG G AG G
Sbjct: 1177 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1236
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G RG +G G+ G G +GP G PG +G G+
Sbjct: 1237 AGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1296
Query: 347 ------QGLPGLAGHHG 379
QGLPG AG G
Sbjct: 1297 PGPVGEQGLPGAAGQDG 1313
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1157 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1216
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1217 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1276
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1277 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1323
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 776 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 835
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 836 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 895
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 896 GPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 946
Score = 52.4 bits (124), Expect = 6e-07
Identities = 44/165 (26%), Positives = 51/165 (30%), Gaps = 3/165 (1%)
Frame = +2
Query: 11 VNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG 190
+ G PG G G PG G PG G G GE G
Sbjct: 411 LRGPPGPMGLTGRPGPVGGPGSSGAKGESGEPGPQGPRGVQGPPGPTGKPGKRGRPGADG 470
Query: 191 NRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN---GLQGLPG 361
RG +G RGE+G G GP G G++G + G +GLPG
Sbjct: 471 GRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPG 530
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G G TGQPG G G
Sbjct: 531 EAGPRG------------------LLGPRGTPGPTGQPGIAGVDG 557
>ref|NP_001098758.1| collagen alpha-3(V) chain [Sus scrofa].
Length = 1748
Score = 167 bits (423), Expect = 1e-41
Identities = 137/459 (29%), Positives = 183/459 (39%), Gaps = 22/459 (4%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG GPPG+ G +G G
Sbjct: 1289 DPGDVGGPGPPGASGEPGPTGPPGKRGASGRMGREGREGEKGAKGEPGPDGPPGRTGPV- 1347
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG--------- 334
G RG G G+ G PG GP GLPGLKG
Sbjct: 1348 --GARGPPGRVGPEGLPGIPGPVGEPGLLGPPGQLGPPGPLGPSGLPGLKGDAGPKGEKG 1405
Query: 335 HNGLQGL---PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRX 505
H GL GL PG AG GDQ G G PG GP G +
Sbjct: 1406 HIGLIGLIGPPGEAGEKGDQGLPGVQGPPGLQGEPGSPGPIGSLGHPGSPGVAGPPGQKG 1465
Query: 506 XXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPR-SPPSLRPKD-----YEV 667
G + + + R S P L P EV
Sbjct: 1466 SKGSPGSQGPRGDTGPPGPPGPP------GPSAELHGLRRRRRSVPVLGPGVPEGGLEEV 1519
Query: 668 DATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYC 847
A+L SL+ ++E L P G+ + P C +L +HP G YWIDPNQGC DAI+V+C
Sbjct: 1520 LASLTSLSLELEQLRRPPGTAERPGLVCSELHRNHPHLPDGEYWIDPNQGCARDAIRVFC 1579
Query: 848 DFST-GETCIRAQP--ENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMAT 1018
+F+ GETC+ E + +W S+ K W T G +F Y ++ +
Sbjct: 1580 NFTAGGETCLHPDKKFETVKLASW---SREKPGNWY-STFRRGKKFSY-VDADGSPVSVV 1634
Query: 1019 QLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTV 1198
QL F++LL+ A Q+ TY C+NS A++DE GN ++ G+N EL + T TV
Sbjct: 1635 QLTFLKLLSAIARQSFTYSCQNSAAWLDEAAGNYGHSLRFLGTNGEELSFNQTAAATITV 1694
Query: 1199 LVDGCS-KKTMNGEKHHFDINK*PSRLPILDIAPLDIGE 1312
DGC +K F ++ LP+ D+A +D G+
Sbjct: 1695 PYDGCRLRKGQTKTLLEFSSSR-VGFLPLWDVAAIDFGQ 1732
Score = 63.9 bits (154), Expect = 2e-10
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G+PG G+DG PG G PG G AG GE
Sbjct: 1043 SPGERGSPGPTGKDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKG------------ 1090
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG------DKGPRGLPGLKGHNG 343
G++G+ G +G +G PG D G RG G+ G G
Sbjct: 1091 SKGDKGDAGPPGPIGIQGPVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPG 1150
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
LQGLPG G GD +G G PG VG G
Sbjct: 1151 LQGLPGPPGEKGDVGDVGSMGPHGAPGPRGPHGPSGSEGPPGLPGGVGQPG 1201
Score = 62.8 bits (151), Expect = 4e-10
Identities = 47/160 (29%), Positives = 56/160 (35%)
Frame = +2
Query: 17 GAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNR 196
G PG G DG G++GPPG GQAG G R GN
Sbjct: 574 GQPGPPGEDGEKGAEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRPGVVGIDGAPGAKGNV 633
Query: 197 GEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHH 376
G QG G +G PG +G G+PG KG G G+PGL G
Sbjct: 634 G------------PPGEPGPPGQQGNPGSQGIPGPQGHIGIPGEKGPPGNPGIPGLPGSD 681
Query: 377 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G TG+ GA GP+G
Sbjct: 682 G------------------PPGHPGHEGPTGEKGAQGPSG 703
Score = 62.8 bits (151), Expect = 4e-10
Identities = 47/181 (25%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGSDGPPG G G GE+
Sbjct: 663 PGEKGPPGNPGIPGLPGSDGPPGHPGHEGPTGEKGAQGPSGSAGPPGYPGSRGVKGTSGN 722
Query: 185 HGNRGE---------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G +GE +G++G++G G++GP G
Sbjct: 723 RGLQGEKGEKGEDGFPGFKGDVGPKGDWGQPGPPGPRGEDGPEGLKGQEGLAGEEGPPGS 782
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG GL GLPG G G + + G G+ G GP G
Sbjct: 783 AGEKGKLGLPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGLEGERGPPGPRGE 842
Query: 500 R 502
R
Sbjct: 843 R 843
Score = 60.5 bits (145), Expect = 2e-09
Identities = 46/165 (27%), Positives = 54/165 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPG G G GS+GPPG G G G +
Sbjct: 1171 GPHGAPGPRGPHGPSGSEGPPGLPGGVGQPGAVGEKGEPGEAGDPGPPGSPGIPGPKGEI 1230
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G G G PG KGP G G KG+ G GLPG
Sbjct: 1231 GEKGD---------------------SGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDL 1269
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G +G+PG GP G R
Sbjct: 1270 GPPGDPGVSGQDGPPGEKGDPGDVGGPGPPGASGEPGPTGPPGKR 1314
Score = 60.1 bits (144), Expect = 3e-09
Identities = 44/166 (26%), Positives = 54/166 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G+ G G PG G G+DG G GE+ +
Sbjct: 837 PGPRGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGR 896
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ G+ QG GE G G++GP G PG G GL GL G
Sbjct: 897 PGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGR 956
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G G PG GP G++
Sbjct: 957 EGAKGD------LGPLGPLGKEGPPGLRGPPGPKGAPGDPGPTGLK 996
Score = 59.7 bits (143), Expect = 4e-09
Identities = 48/186 (25%), Positives = 55/186 (29%), Gaps = 21/186 (11%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPGS G PG G G GE+
Sbjct: 632 NVGPPGEPGPPGQQGNPGSQGIPGPQGHIGIPGEKGPPGNPGIPGLPGSDGPPGHPGHEG 691
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGH-------- 337
G +G G RG +GE G+KG G PG KG
Sbjct: 692 PTGEKGAQGPSGSAGPPGYPGSRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGPKGDWG 751
Query: 338 -------------NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPG 478
GL+G GLAG G G G PG
Sbjct: 752 QPGPPGPRGEDGPEGLKGQEGLAGEEGPPGSAGEKGKLGLPGLPGYPGRPGPKGSIGFPG 811
Query: 479 AVGPAG 496
+GP G
Sbjct: 812 PLGPLG 817
Score = 59.7 bits (143), Expect = 4e-09
Identities = 47/167 (28%), Positives = 55/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGEAG G PGS G PG G+ G KG+ +
Sbjct: 1204 GEKGEPGEAGDPGPPGSPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPG---------ED 1254
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G +G G GEKG+PGD G G PG G G G P
Sbjct: 1255 GAKGNVGPTGLPGDLGPPGDPGVSGQDGPPGEKGDPGDVGGPGPPGASGEPGPTGPPGKR 1314
Query: 359 GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G +G G + G G PG VGP G+
Sbjct: 1315 GASGRMGREGREGEKGAKGEPGPDGPPGRTGPVGARGPPGRVGPEGL 1361
Score = 58.2 bits (139), Expect = 1e-08
Identities = 47/164 (28%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG+ G G G GPPG G G GER +
Sbjct: 981 PGPKGAPGDPGPTGLKGDKGPPGPTGANGPPGERGPVGPAGGIGLPGQSGGQGPVGPMGE 1040
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ GE G G GE GDKG G PG KG G +G G
Sbjct: 1041 KGSPGERGSPGPTGKDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDKGDAGP 1100
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G Q GR G PG G G
Sbjct: 1101 PGPIGIQ---------GPVGHPGSPGADGAQGRRGPPGLFGQKG 1135
Score = 57.8 bits (138), Expect = 1e-08
Identities = 48/163 (29%), Positives = 52/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PG GR G GS G PG G G KG+R
Sbjct: 790 GLPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGLEGERGPP------------ 837
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GEKG PG +GP G G KG G QG G
Sbjct: 838 GPRGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGRP 897
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G + K G G G GP G
Sbjct: 898 GHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPG 940
Score = 57.4 bits (137), Expect = 2e-08
Identities = 47/176 (26%), Positives = 61/176 (34%), Gaps = 12/176 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG +G G P GP G+DG+ GH G+R +
Sbjct: 873 PGLQGPPGFSGPKGPP---GPQGKDGRPGHPGQR------------------------GE 905
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL------ 346
G +G+ G RG G PG G +GLPGL+G G
Sbjct: 906 LGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGREGAKGDLGP 965
Query: 347 ------QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G PGL G G + +G G+ G VGPAG
Sbjct: 966 LGPLGKEGPPGLRGPPGPKGAPGDPGPTGLKGDKGPPGPTGANGPPGERGPVGPAG 1021
Score = 56.6 bits (135), Expect = 3e-08
Identities = 44/166 (26%), Positives = 54/166 (32%), Gaps = 3/166 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G PG+DG G G G KG+R +
Sbjct: 520 GPLGPPGREGKMGRPGADGARGLPGDTGPKGDR---------------GFDGLPGLPGEK 564
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK---GPRGLPGLKGHNGLQGLP 358
G RG+ G G+ GEPG + GPRG PG G G+ G+
Sbjct: 565 GQRGDFGHVGQPGPPGEDGEKGAEGPPGPTGQAGEPGPRGLIGPRGSPGPLGRPGVVGID 624
Query: 359 GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G+ G G PG GP G
Sbjct: 625 GAPGAKGNVGPPGEPGPPGQQGNPGSQGIPGPQGHIGIPGEKGPPG 670
Score = 52.4 bits (124), Expect = 6e-07
Identities = 46/166 (27%), Positives = 50/166 (30%), Gaps = 3/166 (1%)
Frame = +2
Query: 11 VNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG 190
+ G PG G G PG G PG G G GE G
Sbjct: 479 MKGPPGPVGLTGRPGPMGLPGYPGLKGEMGE------------------------MGPQG 514
Query: 191 NRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLP---GLKGHNGLQGLPG 361
RG G G+ G PG G RGLP G KG G GLPG
Sbjct: 515 PRG---------------LQGPLGPPGREGKMGRPGADGARGLPGDTGPKGDRGFDGLPG 559
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
L G G + G TGQ G GP G+
Sbjct: 560 LPGEKGQRGDFGHVGQPGPPGEDGEKGAEGPPGPTGQAGEPGPRGL 605
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,316,466
Number of extensions: 552780
Number of successful extensions: 13514
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 5790
Number of HSP's successfully gapped: 359
Length of query: 453
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 351
Effective length of database: 8,804,438
Effective search space: 3090357738
Effective search space used: 3090357738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012837
(1359 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031769.2| collagen alpha-2(I) chain precursor [Mus muscul... 583 e-166
Alignment gi|NP_112440.2| collagen alpha-1(II) chain isoform 1 precursor ... 385 e-108
Alignment gi|NP_001106987.2| collagen alpha-1(II) chain isoform 2 precurs... 385 e-108
Alignment gi|NP_031768.2| collagen alpha-1(I) chain precursor [Mus muscul... 380 e-105
Alignment gi|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musc... 340 2e-93
Alignment gi|NP_031763.2| collagen alpha-2(V) chain precursor [Mus muscul... 300 1e-82
Alignment gi|NP_031755.2| collagen alpha-1(XI) chain precursor [Mus muscu... 181 2e-45
Alignment gi|NP_058615.1| collagen alpha-3(V) chain [Mus musculus]. 167 1e-41
Alignment gi|NP_056549.2| collagen alpha-1(V) chain precursor [Mus muscul... 165 6e-41
Alignment gi|NP_034056.1| collagen alpha-2(XI) chain [Mus musculus]. 135 7e-32
>ref|NP_031769.2| collagen alpha-2(I) chain precursor [Mus musculus].
Length = 1372
Score = 583 bits (1502), Expect = e-166
Identities = 296/438 (67%), Positives = 316/438 (72%), Gaps = 2/438 (0%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PGVNGAPGEAGRDGNPGSDGPPGRDGQ GHKGER
Sbjct: 920 SPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGSIGPTGAAGAPGPHGSVGPAG 979
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
KHGNRGE QGIRG+KGEPGDKG RGLPGLKG++GLQGLPG
Sbjct: 980 KHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGHRGLPGLKGYSGLQGLPG 1039
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXX 541
LAG HGDQ KDGR+GQPG VGPAG+R
Sbjct: 1040 LAGLHGDQGAPGPVGPAGPRGPAGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPG 1099
Query: 542 XXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPE 721
YDFG+EGDFYRADQPRS PSLRPKDYEVDATLKSLNNQIETLLTPE
Sbjct: 1100 PPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYEVDATLKSLNNQIETLLTPE 1159
Query: 722 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA 901
GSRKNPARTCRDLRLSHPEW+S YYWIDPNQGCTMDAIKVYCDFSTGETCI+AQP N PA
Sbjct: 1160 GSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQAQPVNTPA 1219
Query: 902 KNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCK 1081
KN Y ++ KHVWLGETINGG+QFEYN+EGV++KEMATQLAFMRLLAN ASQNITYHCK
Sbjct: 1220 KNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEMATQLAFMRLLANRASQNITYHCK 1279
Query: 1082 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGEKH--HFDI 1255
NSIAY+DEETG+L KAV+LQGSNDVELVAEGNSRFTY+VLVDGCSKKT K +
Sbjct: 1280 NSIAYLDEETGSLNKAVLLQGSNDVELVAEGNSRFTYSVLVDGCSKKTNEWGKTIIEYKT 1339
Query: 1256 NK*PSRLPILDIAPLDIG 1309
NK PSRLP LDIAPLDIG
Sbjct: 1340 NK-PSRLPFLDIAPLDIG 1356
Score = 63.5 bits (153), Expect = 4e-10
Identities = 48/164 (29%), Positives = 56/164 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG G PG G AG G R
Sbjct: 316 GATGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPA------------------ 357
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE +G RG GE G GP G PGL+G G +GLPG
Sbjct: 358 GSKGESGNKGEPGSVGAQGPPGPSGEEGKRGSPGEAGSAGPAGPPGLRGSPGSRGLPGAD 417
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G GR G+PG +GP G+
Sbjct: 418 GRAG---VMGPPGNRGSTGPAGIRGPNGDAGRPGEPGLMGPRGL 458
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/168 (29%), Positives = 56/168 (33%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSD---GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG+ G PG AGR G PG GPPG G AG +G R
Sbjct: 789 PGMTGFPGAAGRTGPPGPSGIAGPPGPPGAAGKEGIR----------------------- 825
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G RG+ G GEKG G+ G G PG G GL G
Sbjct: 826 ----GPRGD------QGPVGRTGETGASGPPGFVGEKGPSGEPGTAGAPGTAGPQGLLGA 875
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
PG+ G G + G G PGAVG G+
Sbjct: 876 PGILGLPGSRGERGLPGIAGALGEPGPLGISGPPGARGPPGAVGSPGV 923
Score = 58.2 bits (139), Expect = 2e-08
Identities = 46/166 (27%), Positives = 56/166 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG+ GA G G DGN G+ GPPG G G KGE+
Sbjct: 518 HPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPG 577
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G GE G RGE+G PG+ G G G G G G PG
Sbjct: 578 ERGLPGE---------------FGLPGPAGPRGERGTPGESGAAGPSGPIGSRGPSGAPG 622
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G+ G+ G G GA GP G+
Sbjct: 623 PDGNKGEAGAV---------------------GAPGSAGASGPGGL 647
Score = 56.6 bits (135), Expect = 4e-08
Identities = 44/167 (26%), Positives = 54/167 (32%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +G GE G+ G G G G G AG +GER
Sbjct: 564 PGPSGTTGEVGKPGERGLPGEFGLPGPAGPRGERGTPGESGAAGPSGPIGSRGPSGAPGP 623
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQG---IRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
GN+GE +G I G KGE G+ G RG G G +G +G+
Sbjct: 624 DGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGDTGNTGRDGARGI 683
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G G G+ G GP G
Sbjct: 684 PGAVGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNG 730
Score = 54.7 bits (130), Expect = 2e-07
Identities = 46/166 (27%), Positives = 52/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G G+ GP G G AG GE K
Sbjct: 96 PGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGPRGPAGSPGKAGEDGHPGK 155
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE +G+ G +G G G GLPG KG G G+ GL
Sbjct: 156 PGRPGE---------------------RGVVGPQGARGFPGTPGLPGFKGVKGHSGMDGL 194
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G Q G G+ GA GPAG R
Sbjct: 195 KGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGAR 240
Score = 49.7 bits (117), Expect = 5e-06
Identities = 44/164 (26%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA G G G G+ G PG G+ G G R
Sbjct: 636 PGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGDTGNTGRDGARGIPGAVGAPGPAGA 695
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE G RG GE G+ GP G G G G G PG
Sbjct: 696 SGDRGEAGAAGPSGPA------------GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGA 743
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G TG GA GP+G
Sbjct: 744 KGEKGTKGPKGENGIV---------------GPTGSVGAAGPSG 772
>ref|NP_112440.2| collagen alpha-1(II) chain isoform 1 precursor [Mus musculus].
Length = 1487
Score = 385 bits (990), Expect(2) = e-108
Identities = 208/449 (46%), Positives = 254/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 1025 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGK 1084
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G RGL G +G GLQGLPG
Sbjct: 1085 QGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQGLPGP 1144
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPPGS 1204
Query: 545 XXXXXXXXXXXXXYDF-GYEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RAD+ S +LR D EVDATLKSL
Sbjct: 1205 PGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADS--TLRQHDVEVDATLKSL 1262
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE++ +P+GSRKNPARTC+DL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1263 NNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1322
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P +P KNW+ + SK KKH+W GET+NGG F Y + Q+ F+RLL+
Sbjct: 1323 CVYPNPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLS 1382
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T
Sbjct: 1383 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHT 1442
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1443 GKWGKTVIEYRSQKTSRLPIIDIAPMDIG 1471
Score = 25.4 bits (54), Expect(2) = e-108
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 1312 ADQKSXVDVGPVCF 1353
A+Q+ VD+GPVCF
Sbjct: 1473 AEQEFGVDIGPVCF 1486
Score = 66.2 bits (160), Expect = 6e-11
Identities = 52/171 (30%), Positives = 58/171 (33%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 893 PGATGFPGAAGRVGPPGANGNPGPAGPPGPAGKDGPKGVRGDSGPP-------------- 938
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G G+ G GEKGEPGD GP GL G G GL
Sbjct: 939 -------GRAGD---------------PGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGL 976
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G+ G G + G G PG VGP G+
Sbjct: 977 AGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGL 1027
Score = 63.9 bits (154), Expect = 3e-10
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPG AG +G G+ G PG G G GER
Sbjct: 477 GPQGAPGPAGEEGKRGARGEPGGAGPIGPPGERGAP------------------------ 512
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 513 GNRG------------------FPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGRPGEP 554
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 555 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA G G DG PG GPPG G AG G +
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEP 395
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQ 349
GN G G G G PG GPRG PG + G G
Sbjct: 396 GNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQA 455
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PG+AG GDQ K G G+PG GP G
Sbjct: 456 GEPGIAGFKGDQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIG 504
Score = 60.5 bits (145), Expect = 3e-09
Identities = 46/165 (27%), Positives = 53/165 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G GNPG G PG G G +G
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPP-------------------------- 245
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G+ G GE G+PG G RGLPG +G G G PGL
Sbjct: 246 -GPAGKP---------------------GDDGEAGKPGKSGERGLPGPQGARGFPGTPGL 283
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G + G G PG +GP G+
Sbjct: 284 PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL 328
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/172 (25%), Positives = 51/172 (29%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G G G +
Sbjct: 709 SPGAQGLQGPRGLPGTPGTDGPKGAAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 768
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 769 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETG 828
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 880
Score = 57.0 bits (136), Expect = 3e-08
Identities = 47/165 (28%), Positives = 52/165 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG +DG G+ GPPG G AG +GE+
Sbjct: 626 PGLRGLPG---KDGETGAAGPPGPSGPAGERGEQ-------------------------- 656
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G QGI GE G PG GPRG G G G G GL
Sbjct: 657 -GAPGPSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGL 715
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G G G PG G AGI
Sbjct: 716 QGPRGLPGTPGTDGPKGAAGPDGPPGAQGPPGLQGMPGERGAAGI 760
Score = 55.8 bits (133), Expect = 7e-08
Identities = 44/164 (26%), Positives = 52/164 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G G G++
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK 884
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG QG G G PG G G PG G+ G G PG A
Sbjct: 885 GARG---------------------AQGPPGATGFPGAAGRVGPPGANGNPGPAGPPGPA 923
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G + G G+PG GP+G+
Sbjct: 924 GKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGL 967
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/163 (25%), Positives = 49/163 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 576 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKD 635
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G G +G G G PGL
Sbjct: 636 GETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLV 695
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GP G
Sbjct: 696 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAAGPDG 738
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/169 (25%), Positives = 52/169 (30%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G G GR G+PG GP G G+ G G+ +
Sbjct: 930 GVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQR 989
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G RG +G G G PG GP G PG +G G G P
Sbjct: 990 GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD 1049
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+ G G+ K G G+ GA GP G
Sbjct: 1050 GAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1098
Score = 49.7 bits (117), Expect = 5e-06
Identities = 44/170 (25%), Positives = 51/170 (30%), Gaps = 3/170 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 547 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPG 606
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+G G+ G G G G G RG G G +G QG
Sbjct: 607 PKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQG 666
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
LPG G G+ G G PG VGP G R
Sbjct: 667 LPGPPGPPGEGGKQGDQGI---------------PGEAGAPGLVGPRGER 701
>ref|NP_001106987.2| collagen alpha-1(II) chain isoform 2 precursor [Mus musculus].
Length = 1419
Score = 385 bits (990), Expect(2) = e-108
Identities = 208/449 (46%), Positives = 254/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 957 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGK 1016
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G RGL G +G GLQGLPG
Sbjct: 1017 QGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQGLPGP 1076
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1077 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPPGS 1136
Query: 545 XXXXXXXXXXXXXYDF-GYEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RAD+ S +LR D EVDATLKSL
Sbjct: 1137 PGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADS--TLRQHDVEVDATLKSL 1194
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE++ +P+GSRKNPARTC+DL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1195 NNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1254
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P +P KNW+ + SK KKH+W GET+NGG F Y + Q+ F+RLL+
Sbjct: 1255 CVYPNPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLS 1314
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T
Sbjct: 1315 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHT 1374
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1375 GKWGKTVIEYRSQKTSRLPIIDIAPMDIG 1403
Score = 25.4 bits (54), Expect(2) = e-108
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 1312 ADQKSXVDVGPVCF 1353
A+Q+ VD+GPVCF
Sbjct: 1405 AEQEFGVDIGPVCF 1418
Score = 66.2 bits (160), Expect = 6e-11
Identities = 52/171 (30%), Positives = 58/171 (33%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 825 PGATGFPGAAGRVGPPGANGNPGPAGPPGPAGKDGPKGVRGDSGPP-------------- 870
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G G+ G GEKGEPGD GP GL G G GL
Sbjct: 871 -------GRAGD---------------PGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGL 908
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G+ G G + G G PG VGP G+
Sbjct: 909 AGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGL 959
Score = 63.9 bits (154), Expect = 3e-10
Identities = 49/163 (30%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPG AG +G G+ G PG G G GER
Sbjct: 409 GPQGAPGPAGEEGKRGARGEPGGAGPIGPPGERGAP------------------------ 444
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 445 GNRG------------------FPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGRPGEP 486
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 487 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 529
Score = 63.5 bits (153), Expect = 4e-10
Identities = 49/169 (28%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA G G DG PG GPPG G AG G +
Sbjct: 268 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEP 327
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQ 349
GN G G G G PG GPRG PG + G G
Sbjct: 328 GNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQA 387
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PG+AG GDQ K G G+PG GP G
Sbjct: 388 GEPGIAGFKGDQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIG 436
Score = 60.5 bits (145), Expect = 3e-09
Identities = 46/165 (27%), Positives = 53/165 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G GNPG G PG G G +G
Sbjct: 144 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPP-------------------------- 177
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G+ G GE G+PG G RGLPG +G G G PGL
Sbjct: 178 -GPAGKP---------------------GDDGEAGKPGKSGERGLPGPQGARGFPGTPGL 215
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G + G G PG +GP G+
Sbjct: 216 PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL 260
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/172 (25%), Positives = 51/172 (29%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G G G +
Sbjct: 641 SPGAQGLQGPRGLPGTPGTDGPKGAAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 700
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 701 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETG 760
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 761 PPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 812
Score = 57.0 bits (136), Expect = 3e-08
Identities = 47/165 (28%), Positives = 52/165 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG +DG G+ GPPG G AG +GE+
Sbjct: 558 PGLRGLPG---KDGETGAAGPPGPSGPAGERGEQ-------------------------- 588
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G QGI GE G PG GPRG G G G G GL
Sbjct: 589 -GAPGPSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGL 647
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G G G PG G AGI
Sbjct: 648 QGPRGLPGTPGTDGPKGAAGPDGPPGAQGPPGLQGMPGERGAAGI 692
Score = 55.8 bits (133), Expect = 7e-08
Identities = 44/164 (26%), Positives = 52/164 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G G G++
Sbjct: 757 GETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK 816
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG QG G G PG G G PG G+ G G PG A
Sbjct: 817 GARG---------------------AQGPPGATGFPGAAGRVGPPGANGNPGPAGPPGPA 855
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G + G G+PG GP+G+
Sbjct: 856 GKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGL 899
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/163 (25%), Positives = 49/163 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 508 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKD 567
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G G +G G G PGL
Sbjct: 568 GETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLV 627
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GP G
Sbjct: 628 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAAGPDG 670
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/169 (25%), Positives = 52/169 (30%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G G GR G+PG GP G G+ G G+ +
Sbjct: 862 GVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQR 921
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G RG +G G G PG GP G PG +G G G P
Sbjct: 922 GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD 981
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G+ G G+ K G G+ GA GP G
Sbjct: 982 GAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1030
Score = 49.7 bits (117), Expect = 5e-06
Identities = 44/170 (25%), Positives = 51/170 (30%), Gaps = 3/170 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 479 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPG 538
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+G G+ G G G G G RG G G +G QG
Sbjct: 539 PKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQG 598
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
LPG G G+ G G PG VGP G R
Sbjct: 599 LPGPPGPPGEGGKQGDQGI---------------PGEAGAPGLVGPRGER 633
>ref|NP_031768.2| collagen alpha-1(I) chain precursor [Mus musculus].
Length = 1453
Score = 380 bits (976), Expect(2) = e-105
Identities = 201/449 (44%), Positives = 253/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PGE+GR+G+PG++G PGRDG G KG+R K
Sbjct: 992 PGLAGPPGESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1051
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G+RGE QG RG+KGE G++G RG+ G +G +GLQG PG
Sbjct: 1052 NGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGS 1111
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G+Q KDG G PG +GP G R
Sbjct: 1112 PGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGP 1171
Query: 545 XXXXXXXXXXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLN 691
YDF + G +YRAD +R +D EVD TLKSL+
Sbjct: 1172 PGPPGPPGPPSGGYDFSFLPQPPQEKSQDGGRYYRADDANV---VRDRDLEVDTTLKSLS 1228
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKVYC+ TG+TC
Sbjct: 1229 QQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTC 1288
Query: 872 IRAQPENIPAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
+ ++P KNWY N K KKHVW GE++ G FEY EG ++A QL F+RL++
Sbjct: 1289 VFPTQPSVPQKNWYISPNPKEKKHVWFGESMTDGFPFEYGSEGSDPADVAIQLTFLRLMS 1348
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++EL EGNSRFTY+ LVDGC+ T
Sbjct: 1349 TEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIELRGEGNSRFTYSTLVDGCTSHT 1408
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + SRLPI+D+APLDIG
Sbjct: 1409 GTWGKTVIEYKTTKTSRLPIIDVAPLDIG 1437
Score = 22.7 bits (47), Expect(2) = e-105
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
DQ+ +D+GP CF
Sbjct: 1440 DQEFGLDIGPACF 1452
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA G AG+DG G+ G PG G AG +GE+
Sbjct: 590 PGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQ-------------------------- 623
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G QG+ G+ G PG G RG G G G+QG PG
Sbjct: 624 -GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 682
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
AG G+ G G PG G AG+
Sbjct: 683 AGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPGERGAAGL 727
Score = 63.2 bits (152), Expect = 5e-10
Identities = 47/166 (28%), Positives = 54/166 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +G PG G G PGS G PG DG AG KG +
Sbjct: 464 PGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPSGERGAPGPAGPKGSPG---------E 514
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G G G+ G GP G PG +G G+ G PG
Sbjct: 515 AGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGP 574
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G+ + G G PG GPAG R
Sbjct: 575 KGTAGEPGKAGERGLPGPPGAVGPAGKDGEAGAQGAPGPAGPAGER 620
Score = 62.0 bits (149), Expect = 1e-09
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NGAPG AG G PG+ GP G G +G G +
Sbjct: 387 GANGAPGIAGAPGFPGARGPSGPQGPSGPPGPKGNSGEPGAP------------------ 428
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
GN+G+ +G RG +GEPG G G PG +G G +G PG
Sbjct: 429 GNKGDTGAKGEPGATGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGAD 488
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G G PGA G G
Sbjct: 489 GVAGPKGPSGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 531
Score = 61.6 bits (148), Expect = 1e-09
Identities = 45/164 (27%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G G GPPG GQ G G K
Sbjct: 524 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGTAGEPGK 583
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG G G GE G++GP G PG +G G G PG
Sbjct: 584 AGERGLPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE 643
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+Q + G G PG GP G
Sbjct: 644 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 687
Score = 60.5 bits (145), Expect = 3e-09
Identities = 48/163 (29%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG GPPG G AG KG
Sbjct: 894 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLP 953
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GE+G PG GP GL G G +G +G PG
Sbjct: 954 GQRGE---RGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAE 1010
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG VGPAG
Sbjct: 1011 GSPG---RDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1050
Score = 56.6 bits (135), Expect = 4e-08
Identities = 48/172 (27%), Positives = 55/172 (31%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G PG+ GP G G G GE K
Sbjct: 167 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGE---------PGGSGPMGPRGPPGPPGK 217
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGL 346
+G+ GE G GE+G PG +G R GLPG+KGH G
Sbjct: 218 NGDDGE------------------AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGF 259
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GL G G G G G+PG G AG R
Sbjct: 260 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGTAGAR 311
Score = 56.6 bits (135), Expect = 4e-08
Identities = 44/164 (26%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG+ G G G GP G G G +GE +
Sbjct: 761 PGPAGAPGDKGEAGPSGPPGPTGARGAPGDRGE---------AGPPGPAGFAGPPGADGQ 811
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G G G PG KGPRG G G G G G
Sbjct: 812 PGAKGEPGDTGVKGDAGPPGPAGPAGPPGPIGNVGAPGPKGPRGAAGPPGATGFPGAAGR 871
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G+PG VGP G
Sbjct: 872 VGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPG 915
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/168 (27%), Positives = 55/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEA---GRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG A G G PG G PG G G G R
Sbjct: 628 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGAR---------------------- 665
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+ G GE G +G+ G PG G +G PGL+G G +G
Sbjct: 666 --GERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPGERG 723
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GL G GD+ KDG G G +GP G
Sbjct: 724 AAGLPGPKGDR---------GDAGPKGADGSPGKDGARGLTGPIGPPG 762
Score = 54.3 bits (129), Expect = 2e-07
Identities = 45/171 (26%), Positives = 51/171 (29%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG NGAPG+ G G PG G PG G AG +G
Sbjct: 280 SPGENGAPGQMGPRGLPGERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFPGAVG 339
Query: 182 KHGN------RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG 343
G RG G G G+PG KG G PG+ G
Sbjct: 340 AKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA---G 396
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PG G G Q G G+PGA G G
Sbjct: 397 APGFPGARGPSGPQGPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGATGVQG 447
Score = 53.1 bits (126), Expect = 5e-07
Identities = 42/166 (25%), Positives = 49/166 (29%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G G G G PG+ G PG G+ G G
Sbjct: 844 NVGAPGPKGPRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETG 903
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G GE G GEKG PG GP G PG G G+ G G
Sbjct: 904 PAGRPGE---------------VGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRG 948
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+ G G + G G PG +GP G+
Sbjct: 949 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGL 994
Score = 48.9 bits (115), Expect = 9e-06
Identities = 26/78 (33%), Positives = 33/78 (42%)
Frame = +2
Query: 269 GIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXX 448
G+ G KG+PG +GPRG G G +G+ G PGL G G
Sbjct: 99 GVEGPKGDPGPQGPRGPVGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYD 158
Query: 449 XKDGRTGQPGAVGPAGIR 502
K PG +GP+G R
Sbjct: 159 EKSAGVSVPGPMGPSGPR 176
>ref|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musculus].
Length = 1464
Score = 340 bits (871), Expect = 2e-93
Identities = 191/449 (42%), Positives = 236/449 (52%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 1000 PGQPGTAGEPGRDGNPGSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGK 1059
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1060 SGDRGETGPAGPSGAPGPAGARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGS 1119
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1120 PGAAGHQGAIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1179
Query: 545 XXXXXXXXXXXXXYDF---------GYEGDFYRADQPR---SPPSLRPKDYEVDATLKSL 688
G G+ P P + E+ ++LKS+
Sbjct: 1180 PGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKSGGFSPYYGDDPMDFKINTEEIMSSLKSV 1239
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
N QIE+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC MDAIKV+C+ TGET
Sbjct: 1240 NGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGET 1299
Query: 869 CIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
CI A P +P K+W+ +S KKHVW GE++NGG QF Y + + QLAF+RLL+
Sbjct: 1300 CINASPMTVPRKHWWTDSGAEKKHVWFGESMNGGFQFSYGPPDLPEDVVDVQLAFLRLLS 1359
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
+ ASQNITYHCKNSIAYMD+ +GN+KK++ L GSN+ E AEGNS+FTYTVL DGC+K T
Sbjct: 1360 SRASQNITYHCKNSIAYMDQASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHT 1419
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K F+ + RLPI+DIAP DIG
Sbjct: 1420 GEWSKTVFEYQTRKAMRLPIIDIAPYDIG 1448
Score = 65.5 bits (158), Expect = 9e-11
Identities = 50/167 (29%), Positives = 56/167 (33%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG +G G+PGS GPPG GQAG G
Sbjct: 178 PGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGP------PGPPGALGPAGPAGKDGE 231
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
+ G GE +G RG G G+KG G PGLKG NGL G
Sbjct: 232 SGRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGD 291
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G + G GQPG GP G
Sbjct: 292 NGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 338
Score = 62.4 bits (150), Expect = 8e-10
Identities = 48/173 (27%), Positives = 56/173 (32%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AG++G G GPPG G AG KG+ +
Sbjct: 598 PGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPPGPQGLQGIPGTGGPPGENGKPGE 657
Query: 185 HGNRGE------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEP---GDKGPRGLPGLKGH 337
G +GE G RG G P G KGP G PG G
Sbjct: 658 PGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGPAGPPGPPGA 717
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G+ G G KDG G G +GP G
Sbjct: 718 SGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGPPG 770
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/165 (27%), Positives = 53/165 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G GN G GPPG G++G G K
Sbjct: 532 PGIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 591
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
+G RG QG G G GDKG G P G GLQG+PG
Sbjct: 592 NGERG---GPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPP---GPQGLQGIPGT 645
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G+ G G+ G G AGI
Sbjct: 646 GGPPGENGKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGI 690
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/165 (27%), Positives = 53/165 (32%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G G GPPG +G G KGE
Sbjct: 363 SPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEM------------------------- 397
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G G G RG GEPG G +G PG +G G G PG
Sbjct: 398 --GPAGIPGAPGLIGARGPPGPAGTNGIPGTRGPSGEPGKNGAKGEPGARGERGEAGSPG 455
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+ G G+ KDG G+PGA G G
Sbjct: 456 IPGPKGED---------------------GKDGSPGEPGANGLPG 479
Score = 61.2 bits (147), Expect = 2e-09
Identities = 45/164 (27%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PG++G PG G +G G+
Sbjct: 868 PGTAGFPGGRGLPGPPGNNGNPGPPGPSGAPGK---DGPPGPAGNSGSPGNPGIAGPKGD 924
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RG G PG GPRG PG +G G G PG
Sbjct: 925 AGQPGEKGPPGAQGPPGSPGPLGIAGLTGARGLAGPPGMPGPRGSPGPQGIKGESGKPGA 984
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+GH+G++ G GQPG G G
Sbjct: 985 SGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSDGQPGRDGSPG 1028
Score = 60.5 bits (145), Expect = 3e-09
Identities = 43/164 (26%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GE G G G+DG PG+DG G G
Sbjct: 733 PGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGPPGPAGQPGDKGEGGSPGLPGIAGP 792
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G +GE+G PG+KG G PG G G G G
Sbjct: 793 RGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGPAGPTGSSGPAGP 852
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G PG GP+G
Sbjct: 853 PGPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGNPGPPGPSG 896
Score = 59.7 bits (143), Expect = 5e-09
Identities = 49/185 (26%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G G+ G PG G +G GER
Sbjct: 649 PGENGKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGP 708
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +GEKGEPG G
Sbjct: 709 AGPPGPPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGP 768
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 769 PGPAGQPGDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 828
Query: 482 VGPAG 496
G G
Sbjct: 829 PGEKG 833
Score = 59.7 bits (143), Expect = 5e-09
Identities = 47/180 (26%), Positives = 59/180 (32%), Gaps = 15/180 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG+ G G+PG G G G G +GE
Sbjct: 769 PGPAGQPGDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGA 828
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGL 346
G +GE QG++GE+G PG G RGLPG G+NG
Sbjct: 829 PGEKGEGGPPGPAGPTGSSGPAGPPGPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGN 888
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---------PGAVGPAGI 499
G PG +G G G+ G+ PG+ GP GI
Sbjct: 889 PGPPGPSGAPGKDGPPGPAGNSGSPGNPGIAGPKGDAGQPGEKGPPGAQGPPGSPGPLGI 948
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 3/168 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG +G PG+ GP G G+ G KGE +
Sbjct: 410 GARGPPGPAGTNGIPGTRGPSGEPGKNGAKGE------PGARGERGEAGSPGIPGPKGED 463
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G +G G G PG+KGP RG PG G G+ G P
Sbjct: 464 GKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGPRGVAGEP 523
Query: 359 GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G G G +G+PG GP+G R
Sbjct: 524 GRDGTPGGPGIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPR 571
Score = 55.5 bits (132), Expect = 1e-07
Identities = 45/172 (26%), Positives = 52/172 (30%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGP---------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXX 160
G NG PGE G G G GP PGRDG G G R
Sbjct: 494 GPNGIPGEKGPPGERGGPGPAGPRGVAGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPP 553
Query: 161 XXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHN 340
+ G G G GE+G PG G G G G
Sbjct: 554 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPAGKNGET 613
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G QG PG G GD+ ++G+ G+PG G G
Sbjct: 614 GPQGPPGPTGPAGDKGDSGPPGPQGLQGIPGTGGPPGENGKPGEPGPKGEVG 665
Score = 55.1 bits (131), Expect = 1e-07
Identities = 44/165 (26%), Positives = 50/165 (30%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
NPG+ G G+AG+ PG GPPG G G G
Sbjct: 915 NPGIAGPKGDAGQ---PGEKGPPGAQGPPGSPGPLGIAGLTGARGLAGPPGMPGPRGSPG 971
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G +GE G G GE G GP+GLPG G G G G
Sbjct: 972 PQGIKGE------------------SGKPGASGHNGERGPPGPQGLPGQPGTAGEPGRDG 1013
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG VGP+G
Sbjct: 1014 NPGSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSG 1058
>ref|NP_031763.2| collagen alpha-2(V) chain precursor [Mus musculus].
Length = 1497
Score = 300 bits (769), Expect(2) = 1e-82
Identities = 175/449 (38%), Positives = 228/449 (50%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG GE G +G G+DG PGRDG G +G+R
Sbjct: 1035 PGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD 1094
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RGE QG RG+KG+ GD+G RG G +G GLQGLPG
Sbjct: 1095 AGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGP 1154
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G +G+Q K+G G G +GP G+R
Sbjct: 1155 PGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGE 1214
Query: 545 XXXXXXXXXXXXX----------YDFGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSL 688
YD + DQ +P D + TLKSL
Sbjct: 1215 PGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQA-APDDTNKTDPGIHVTLKSL 1273
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
++QIET+ +P+GS+K+PARTC DL+L HP SG YWIDPNQG DAIKVYC+ TGET
Sbjct: 1274 SSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAEDAIKVYCNMETGET 1333
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
CI A P ++P K W+ + S K VW G +N G+QF Y + + TQ+ F+RLL+
Sbjct: 1334 CISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYG-DYQSPNTAITQMTFLRLLS 1392
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
ASQN+TY C+N++ YMD++ NLKKAV+L+GSND+E+ EGN RF YTVL D CSK+
Sbjct: 1393 KEASQNLTYICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFRYTVLQDTCSKRN 1452
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
N K F+ + +RLPI+D+ P+DIG
Sbjct: 1453 GNVGKTIFEYRTQNVARLPIIDVGPVDIG 1481
Score = 25.8 bits (55), Expect(2) = 1e-82
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 1312 ADQKSXVDVGPVCF 1353
ADQ+ +D+GPVCF
Sbjct: 1483 ADQEFGLDIGPVCF 1496
Score = 63.9 bits (154), Expect = 3e-10
Identities = 48/173 (27%), Positives = 58/173 (33%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AGR G PG G PG G AG G+
Sbjct: 903 PGATGFPGSAGRVGPPGPAGAPGPAGPAGEPGKEGPP----------------------- 939
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---------RGLPGLKGH 337
G RG+ +G GE G+PG GP RG+ G+ G
Sbjct: 940 -GLRGDPGSHGRVGDRGPAGPPGSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 998
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G+PGL G G +G G+PG GPAG
Sbjct: 999 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAG 1051
Score = 62.4 bits (150), Expect = 8e-10
Identities = 53/186 (28%), Positives = 58/186 (31%), Gaps = 21/186 (11%)
Frame = +2
Query: 8 GVNGAPGEAGRDGN---PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G GA G AG DG PG GPPG G G KGE
Sbjct: 781 GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE---------------PGPRGLVGPP 825
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG----------------- 307
GN G G++GE GEPG KG
Sbjct: 826 GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPH 885
Query: 308 -PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAV 484
P G+PGLKG G QG PG G G G G+PG
Sbjct: 886 GPHGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPA---------GPAGEPGKE 936
Query: 485 GPAGIR 502
GP G+R
Sbjct: 937 GPPGLR 942
Score = 60.1 bits (144), Expect = 4e-09
Identities = 46/164 (28%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PGE G+ G+ G G PG G G +GER
Sbjct: 678 PGPPGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNP----------------------- 714
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RGE +G G G GD GP GL G+ G G+ G PG
Sbjct: 715 -GERGEPGITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGP 773
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG G PG +GP G
Sbjct: 774 KGDRG------------GIGEKGAEGTAGNDGARGLPGPLGPPG 805
Score = 59.3 bits (142), Expect = 7e-09
Identities = 45/170 (26%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG GR G+ G GPPG G G GE +
Sbjct: 939 PGLRGDPGSHGRVGDRGPAGPPGSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 998
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG +G G G PG GP G PG +G G G PG
Sbjct: 999 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGR 1058
Query: 365 ------AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD G+ G+PG+ GP G
Sbjct: 1059 DGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGEPGSRGPVG 1108
Score = 58.9 bits (141), Expect = 9e-09
Identities = 46/172 (26%), Positives = 55/172 (31%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G DG PG+ GP G G +G G
Sbjct: 412 GSQGLPGAVGTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVP 471
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQ 349
G +GE +G RG +G+PG GP RG PG +G G
Sbjct: 472 GFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSD 531
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGR---TGQPGAVGPAG 496
GLPG G G++ G TG PG GP G
Sbjct: 532 GLPGPKGAQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEG 583
Score = 57.8 bits (138), Expect = 2e-08
Identities = 47/166 (28%), Positives = 53/166 (31%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG G G PG+ G PG DG G KG +
Sbjct: 506 DPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDP------- 558
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G GE G G GE G GP G G++G G GLPG
Sbjct: 559 --GRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPG 616
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G GD KDG G G VGP G+
Sbjct: 617 PKGSSGD---LGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGL 659
Score = 56.6 bits (135), Expect = 4e-08
Identities = 47/178 (26%), Positives = 52/178 (29%), Gaps = 12/178 (6%)
Frame = +2
Query: 2 NPGVNG------APGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXX 163
NPG G PGE G G G DGP G G G G+
Sbjct: 713 NPGERGEPGITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPG 772
Query: 164 XXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------GPRGLPG 325
G +G G GEKGEPG + G RG PG
Sbjct: 773 PKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPG 832
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G NG G G AG G G G PG GP G+
Sbjct: 833 SRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGV 890
Score = 53.1 bits (126), Expect = 5e-07
Identities = 42/167 (25%), Positives = 53/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQ---AGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG+ G PG G G+ G G G+ G G KGE
Sbjct: 441 PGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGK 500
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ G G+ G KG G++GP G G KG G G
Sbjct: 501 RGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGR 560
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G + +DGR G PG++G G
Sbjct: 561 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRG 607
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/172 (25%), Positives = 51/172 (29%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G G G +G G G PG G+AG G K
Sbjct: 294 PGLKGHRGHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGK 353
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG------L 346
G G G++GE G G +GP G G +G G
Sbjct: 354 RGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGS 413
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
QGLPG G G G G G+ GP GIR
Sbjct: 414 QGLPGAVGTDG---TPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIR 462
>ref|NP_031755.2| collagen alpha-1(XI) chain precursor [Mus musculus].
Length = 1804
Score = 181 bits (458), Expect = 2e-45
Identities = 150/485 (30%), Positives = 192/485 (39%), Gaps = 49/485 (10%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GEAG G PG GPPG G G +GE+ K
Sbjct: 1342 PGPPGPSGEAGPPGPPGKRGPPGASGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGK 1401
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG---------H 337
G G G G+ G PG GP GLPGLKG H
Sbjct: 1402 PGPEG---------LRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGH 1452
Query: 338 NGLQGL---PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXX 508
GL GL PG G GD+ G G PG GPAG +
Sbjct: 1453 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGN 1512
Query: 509 XXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSP----------PSLRPK- 655
G +GD P P P L PK
Sbjct: 1513 KGSSGPT---------------------GQKGDSGMPGPPGPPGPPGEVIQPLPILSPKK 1551
Query: 656 -----------------DY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 769
DY E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1552 TRRHTESIQGDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1611
Query: 770 HPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI--RAQPENIPAKNWYRNSKVKKHV 940
HP++ G YWIDPNQGC+ D+ KVYC+F+ GETCI + E + +W K K
Sbjct: 1612 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSW---PKEKPGS 1668
Query: 941 WLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNL 1120
W E G ++EG + Q+ F++LL A QN TY+C S A+ D +G+
Sbjct: 1669 WYSEFKRGKLLSYLDVEGNSIN--MVQMTFLKLLTASARQNFTYNCHQSAAWYDVLSGSY 1726
Query: 1121 KKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGEKHHFDINK*P-SRLPILDIAP 1297
KA+ GSND E+ E N L DGC+ + EK +IN ++PI+D+
Sbjct: 1727 DKALRFLGSNDEEMSYENNPHI--KALYDGCASR-KGYEKTVIEINTPKIDQVPIIDVMI 1783
Query: 1298 LDIGE 1312
D G+
Sbjct: 1784 NDFGD 1788
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 991 PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGP 1050
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1051 QGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1110
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1111 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1157
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 678 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 737
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 738 QSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 797
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 798 EVGQVGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 830
Score = 63.5 bits (153), Expect = 4e-10
Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AG G PG GP G G+ G +G +
Sbjct: 1075 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ 1134
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK------------GPRGLPGL 328
G++G+ GI G GEPG + G RG PGL
Sbjct: 1135 KGSKGDKGENGPPGPPGLQGPVGAP---GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGL 1191
Query: 329 KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G GLQGLPG G G+ DG G PG++G G+
Sbjct: 1192 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGV 1248
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 709 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV 768
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 769 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQ 828
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 829 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGS 888
Query: 500 R 502
R
Sbjct: 889 R 889
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/163 (27%), Positives = 58/163 (35%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1199 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGVV--------- 1249
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE +G +GE G PG GP G+ G G +G +G PG
Sbjct: 1250 GDKGEPGEAGNPGPPGEAGSGGLKGERGEKGEAGPPGAAGPAGIKGPPGDDGPKGNPGPV 1309
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1310 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1349
Score = 60.5 bits (145), Expect = 3e-09
Identities = 48/173 (27%), Positives = 56/173 (32%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G G G PG GPPG +DG GH G+R
Sbjct: 913 PGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 972
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGH 337
+ G GE +G +G+ G+ G G RG PG +G
Sbjct: 973 TGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGIRGFPGERGL 1032
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G QG PGL G G Q GR G G GPAG
Sbjct: 1033 PGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1085
Score = 60.1 bits (144), Expect = 4e-09
Identities = 49/184 (26%), Positives = 57/184 (30%), Gaps = 18/184 (9%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G DG+ G G PG+ G G KGE
Sbjct: 1111 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1170
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRG---EKGEPGDKGPRGLPGLKGHNGLQG- 352
G +G QG+ G EKGE GD GP G PG G G QG
Sbjct: 1171 RGQQGMFGQKGDEGARGFPGLPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1230
Query: 353 --------------LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGP 490
G+ G G+ + G G PGA GP
Sbjct: 1231 NGADGPQGPPGSIGSVGVVGDKGEPGEAGNPGPPGEAGSGGLKGERGEKGEAGPPGAAGP 1290
Query: 491 AGIR 502
AGI+
Sbjct: 1291 AGIK 1294
Score = 59.3 bits (142), Expect = 7e-09
Identities = 49/170 (28%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG+ GR PG+DG G G++G KG+R
Sbjct: 568 PGPTGKPGKRGR---PGADGGRGMPGESGSKGDR---------------GFDGLPGLPGD 609
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGE------PGDKGPRGLPGLKGHNGL 346
G+RGE G+RGE GE PG+ GPRGL G +G G
Sbjct: 610 KGHRGE---------RGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGP 660
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PG+ G G Q G G G +GP G
Sbjct: 661 PGQPGIGGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 710
Score = 58.5 bits (140), Expect = 1e-08
Identities = 47/172 (27%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G G +GP G G G GER +
Sbjct: 1027 PGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGE 1086
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------KGHNGL 346
G GE G G GE GDKG G PG KG NG
Sbjct: 1087 KGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGP 1146
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G PGL G G +G G PG GP G++
Sbjct: 1147 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGLPGPIGLQ 1198
Score = 55.8 bits (133), Expect = 7e-08
Identities = 47/167 (28%), Positives = 53/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G GE G GNPG PPG G G KGER
Sbjct: 1247 GVVGDKGEPGEAGNPG---PPGEAGSGGLKGERGEKGEAGPPGAAGPAGIKGPPGDDGPK 1303
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGLQGLP 358
GN G G +GE G+PG GP G G G G +G P
Sbjct: 1304 GNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1363
Query: 359 GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G +G G Q G +G+PG G GI
Sbjct: 1364 GASGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGI 1410
Score = 52.0 bits (123), Expect = 1e-06
Identities = 41/166 (24%), Positives = 49/166 (29%), Gaps = 3/166 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 890 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQR 949
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 950 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1009
Query: 359 GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G G G GP G
Sbjct: 1010 GPQGISGKDGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVG 1055
>ref|NP_058615.1| collagen alpha-3(V) chain [Mus musculus].
Length = 1739
Score = 167 bits (424), Expect = 1e-41
Identities = 134/444 (30%), Positives = 182/444 (40%), Gaps = 8/444 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA GE G G PG G PGR G G +GE+ +
Sbjct: 1293 PGPPGASGEPGARGLPGKRGSPGRMGPEGREGEKGAKGDAGPDGPPGRTGPIGARGPPGR 1352
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL--- 355
G G G G G PG KG G G KGH GL GL
Sbjct: 1353 IGPDGLPGIPGPVGEPGLLGPPGLIGPPGPLGPPGLPGLKGDAGPKGEKGHIGLIGLIGP 1412
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXX 535
PG AG GDQ G G PG VGP G +
Sbjct: 1413 PGEAGEKGDQGLPGVQGPPGLQGDPGLPGPVGSLGHPGPPGVVGPLGQKGSKGSPGSLGP 1472
Query: 536 XXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRS-PPSLRPKDYEVDATLKSLNNQIETLL 712
G + + + RS +L EV A+L SL+ +++ L
Sbjct: 1473 RGDPGPAGPPGPP------GSPAEVHGLRRRRSVTDTLEGGLEEVMASLNSLSLELQQLQ 1526
Query: 713 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQP- 886
P G+ ++P CR+L HP G YWIDPNQGC DA KV+C+F+ GETC+
Sbjct: 1527 RPLGTAESPGLMCRELHRDHPHLPDGEYWIDPNQGCARDAFKVFCNFTAGGETCLYPDKK 1586
Query: 887 -ENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQN 1063
E + +W S+ K W T G +F Y ++ + QL F++LL+ A Q
Sbjct: 1587 FETVKLASW---SREKPGGWY-STFRRGKKFSY-VDADGSPVNVVQLTFLKLLSAAAHQR 1641
Query: 1064 ITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGE-K 1240
TY C+NS+A++DE G+ + ++ QG+N EL + T V DGC + G+ K
Sbjct: 1642 FTYICQNSVAWLDEAAGDHRHSIRFQGTNWEELSFNQTTAATIKVSHDGC--RVRKGQAK 1699
Query: 1241 HHFDINK*PSRLPILDIAPLDIGE 1312
F+ + LP+ D+A D G+
Sbjct: 1700 TLFEFSSSVGFLPLWDVAASDFGQ 1723
Score = 63.9 bits (154), Expect = 3e-10
Identities = 51/176 (28%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGER------XXXXXXXXXXXXXXXXXXXX 166
PG G PG G G PGS+GPPG G G GE+
Sbjct: 660 PGEKGPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGPRGYPGLRGVKGTSGN 719
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL------PGL 328
+ G RGE G RGE G G KGP GL PG
Sbjct: 720 RGLQGEKGERGEDGFPGFKGDEGPKGDRGNPGPPGPRGEDGPEGQKGPGGLPGDEGPPGA 779
Query: 329 KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G+PGL G+ G K G+ GQPG G G
Sbjct: 780 AGEKGKLGVPGLPGYPG---RPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERG 832
Score = 61.2 bits (147), Expect = 2e-09
Identities = 47/160 (29%), Positives = 53/160 (33%)
Frame = +2
Query: 17 GAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNR 196
G PG G DG G GPPG GQAG G R GN
Sbjct: 571 GQPGPPGEDGVKGLQGPPGPTGQAGEPGPRGLIGPRGLPGPLGRPGVTGSDGAPGAKGNV 630
Query: 197 GEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHH 376
G QG G +G PG +GP G PG KG G G+PG+ G
Sbjct: 631 G------------PPGEPGPPGQQGNHGSQGIPGPQGPIGTPGEKGPPGNPGIPGVPGSE 678
Query: 377 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G TG+ GA GP G
Sbjct: 679 G------------------PPGHPGHEGPTGEKGAQGPPG 700
Score = 61.2 bits (147), Expect = 2e-09
Identities = 49/163 (30%), Positives = 55/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G PG GR G GS G PG G G KG+R
Sbjct: 787 GVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGTP------------ 834
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG+ G GEKG PG +GP G PG KG G QG G++
Sbjct: 835 GTRGDRGQPGATGQPGPKGDVGQNGSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGIS 894
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G + K G G G GP G
Sbjct: 895 GHPGQRGELGFQGLTGPPGPAGVLGPQGKVGDVGPLGERGPPG 937
Score = 60.1 bits (144), Expect = 4e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G GNPG G PG +G GH G
Sbjct: 655 GPIGTPGEKGPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGPRGYPGLRGVK 714
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G++G PG GPRG G +G G GLPG
Sbjct: 715 GTSGNRGLQGEKGERGEDGFPGFKGDEGPKGDRGNPGPPGPRGEDGPEGQKGPGGLPGDE 774
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG +GP G
Sbjct: 775 GPPG---AAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLG 814
Score = 58.9 bits (141), Expect = 9e-09
Identities = 46/172 (26%), Positives = 55/172 (31%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG+ G G G GPPG G G GER +
Sbjct: 978 PGPQGAPGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGGIGLPGQSGGQGPIGPAGE 1037
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ----- 349
G+ GE G G GE GDKG G+PG KG G +
Sbjct: 1038 KGSPGERGTPGPTGKDGIPGPPGLQGPSGAAGPSGEEGDKGEVGMPGHKGSKGDKGDAGP 1097
Query: 350 -GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G+ G G DG G G +GP G++
Sbjct: 1098 PGPTGIRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQ 1149
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/163 (28%), Positives = 55/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG+AG G PG G PG G+ G KG+ +
Sbjct: 1201 GEKGEPGDAGDAGPPGIPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPG---------ED 1251
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++G GI GEKG GD G G PG G G +GLPG
Sbjct: 1252 GSKGNMGPTGLPGDLGPPGDPGVPGIDGIPGEKGNAGDIGGPGPPGASGEPGARGLPGKR 1311
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G +GR G+ GA G AG
Sbjct: 1312 GSPG---------------------RMGPEGREGEKGAKGDAG 1333
Score = 58.2 bits (139), Expect = 2e-08
Identities = 47/173 (27%), Positives = 56/173 (32%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPP---GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG G G PG GPP G+DG +GH G+R
Sbjct: 864 PGEKGLPGLQGPPGFPGPKGPPGPQGKDGISGHPGQRGELGFQGLTGPPGPAGVLGPQGK 923
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G GE +G +GE G G G G PG +G G QG
Sbjct: 924 VGDVGPLGERGPPGPPGPPGEQGLPGIEGREGAKGELGPLGSVGKEGPPGPRGFPGPQGA 983
Query: 356 P------GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
P GL G G G++G G +GPAG
Sbjct: 984 PGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGGIGLPGQSGGQGPIGPAG 1036
Score = 58.2 bits (139), Expect = 2e-08
Identities = 43/163 (26%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPG G G GS+GPPG G G G +
Sbjct: 1168 GPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGAVGEKGEPGDAGDAGPPGIPGIPGPKGEI 1227
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ +G GE G G+ GP GLPG G G G+PG+
Sbjct: 1228 GEKGD---------SGPSGAAGPPGKKGPPGEDGSKGNMGPTGLPGDLGPPGDPGVPGID 1278
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G+ G PG +GP G
Sbjct: 1279 GIPGEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPEG 1321
Score = 56.6 bits (135), Expect = 4e-08
Identities = 45/165 (27%), Positives = 52/165 (31%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GN GS G PG G G GE+
Sbjct: 629 NVGPPGEPGPPGQQGNHGSQGIPGPQGPIGTPGEK------------------------- 663
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G G G +G +G PG GPRG PGL+G G G G
Sbjct: 664 --GPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGPRGYPGLRGVKGTSGNRG 721
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
L G G++ G G PG GP G
Sbjct: 722 LQGEKGER---------GEDGFPGFKGDEGPKGDRGNPGPPGPRG 757
Score = 54.7 bits (130), Expect = 2e-07
Identities = 44/170 (25%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGR---DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG+ G GE G G G GPPG +G+ G G
Sbjct: 498 PGLKGELGEVGPQGPRGLQGPPGPPGREGKTGRAGADGARGLPGDTGPKGDRGFDGLPGL 557
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK---GPRGLPGLKGHNGL 346
+ G RG+ G G+ GEPG + GPRGLPG G G+
Sbjct: 558 PGEKGQRGDFGRVGQPGPPGEDGVKGLQGPPGPTGQAGEPGPRGLIGPRGLPGPLGRPGV 617
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G+ G G PG GP G
Sbjct: 618 TGSDGAPGAKGNVGPPGEPGPPGQQGNHGSQGIPGPQGPIGTPGEKGPPG 667
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/166 (25%), Positives = 51/166 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G G G G G G +G +
Sbjct: 1146 PGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGAVGEKGE 1205
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ G+ G G G PG KGP G G KG+ G GLPG
Sbjct: 1206 PGDAGDAGPPGIPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGPTGLPGD 1265
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G GD G +G+PGA G G R
Sbjct: 1266 LGPPGDPGVPGIDGIPGEKGNAGDIGGPGPPGASGEPGARGLPGKR 1311
Score = 53.1 bits (126), Expect = 5e-07
Identities = 40/164 (24%), Positives = 52/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G+ G G PG G G++G G GE+
Sbjct: 834 PGTRGDRGQPGATGQPGPKGDVGQNGSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGI 893
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ G+ QG G+ G G++GP G PG G QGLPG+
Sbjct: 894 SGHPGQRGELGFQGLTGPPGPAGVLGPQGKVGDVGPLGERGPPGPPGPPGE---QGLPGI 950
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G PG +G G
Sbjct: 951 EGREGAKGELGPLGSVGKEGPPGPRGFPGPQGAPGDPGPIGLKG 994
Score = 52.8 bits (125), Expect = 6e-07
Identities = 44/174 (25%), Positives = 56/174 (32%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G +G G PG G G G AG KG
Sbjct: 1007 SPGERGPVGPSGGIGLPGQSGGQGPIGPAGEKGSPGERGTPGPTGKDGIPGPPGLQGPSG 1066
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL----- 346
G GE +G +G+KG+ G GP G+ G GH+GL
Sbjct: 1067 AAGPSGE---------EGDKGEVGMPGHKGSKGDKGDAGPPGPTGIRGPAGHSGLPGADG 1117
Query: 347 ----QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G PGL G GD + G G G++GP G
Sbjct: 1118 AQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHG 1171
>ref|NP_056549.2| collagen alpha-1(V) chain precursor [Mus musculus].
Length = 1838
Score = 165 bits (418), Expect(2) = 6e-41
Identities = 135/447 (30%), Positives = 182/447 (40%), Gaps = 9/447 (2%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G GE G G+PG DGPPG G G G + +
Sbjct: 1441 GIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK 1500
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+RG QGI G G G GP GLPG G G +G G
Sbjct: 1501 GDRG---------LPGPQGSSGPKGDQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPT 1551
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXX 547
G G+ G G PG GP G
Sbjct: 1552 GPKGEA------------------------GHPGLPGPPGPPG-------EVIQPLPIQA 1580
Query: 548 XXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDY-----EVDATLKSLNNQIETLL 712
D G G+ Y DY E+ +L SL +IE +
Sbjct: 1581 SRTRRNIDASQLLDDG-AGESY-------------VDYADGMEEIFGSLNSLKLEIEQMK 1626
Query: 713 TPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCIRAQPE 889
P G+++NPARTC+DL+L HP++ G YW+DPNQGC+ D+ KVYC+F+ G TC+ +
Sbjct: 1627 RPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKK 1686
Query: 890 NIPAK--NWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQN 1063
+ A+ +W K W E G + EG Q+ F+RLL+ A QN
Sbjct: 1687 SEGARITSW---PKENPGSWFSEFKRGKLLSYVDAEG--NPVGVVQMTFLRLLSASAHQN 1741
Query: 1064 ITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGC-SKKTMNGEK 1240
+TY+C S+A+ D TG+ KA+ GSND E+ + N LVDGC +KK
Sbjct: 1742 VTYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYI--RALVDGCATKKGYQKTV 1799
Query: 1241 HHFDINK*PSRLPILDIAPLDIGELTR 1321
D K ++PI+DI D GE ++
Sbjct: 1800 LEIDTPK-VEQVPIVDIMFNDFGEASQ 1825
Score = 21.6 bits (44), Expect(2) = 6e-41
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 1312 ADQKSXVDVGPVCF 1353
A QK +VGP CF
Sbjct: 1823 ASQKFGFEVGPACF 1836
Score = 63.5 bits (153), Expect = 4e-10
Identities = 45/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG+ G PG G G GE+
Sbjct: 710 NVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEG 769
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G +G GIRG KG G+KG G PG KG G++G G
Sbjct: 770 PPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRG 829
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G G PG +GP G
Sbjct: 830 EIGPPGPR------------GEDGPEGPKGRGGPNGDPGPLGPTG 862
Score = 61.6 bits (148), Expect = 1e-09
Identities = 45/164 (27%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG GR G+ G+ G PG+ G G +G
Sbjct: 600 PGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGIPGD 659
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG+ +G G G PG G G PG KG+ G QG PG
Sbjct: 660 DGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGP 719
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ K G G PGA GP G
Sbjct: 720 PGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPG 763
Score = 61.2 bits (147), Expect = 2e-09
Identities = 44/166 (26%), Positives = 56/166 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G PG AG+DG PG G G GQ G G
Sbjct: 1346 DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQG 1405
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +GE G+ G G+ G GP+G PG G +GL+G+PG
Sbjct: 1406 EKGAKGE---------------------AGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPG 1444
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G G G PG +GP G+
Sbjct: 1445 PVGEQG---------------------LPGSPGPDGPPGPMGPPGL 1469
Score = 59.7 bits (143), Expect = 5e-09
Identities = 42/163 (25%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PG+ G G G GPPG G+ G +G
Sbjct: 580 GLKGEPGDMGPQGPRGVQGPPGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLP 639
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G G G +G PG+ GPRGL G KG G G PG+
Sbjct: 640 GEKGHRGDPGPSGPPGIPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVT 699
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G GA+GP G
Sbjct: 700 GMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPG 742
Score = 59.7 bits (143), Expect = 5e-09
Identities = 48/165 (29%), Positives = 53/165 (32%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G GE G+ G PG G PGR G G G
Sbjct: 854 DPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG 913
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G RGE G GE+G G +GP G PG KG G G G
Sbjct: 914 PTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDG 973
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
L GH G + K G G PG VGP G
Sbjct: 974 LPGHPGQR---------------GETGFQGKTGPPGPPGVVGPQG 1003
Score = 59.7 bits (143), Expect = 5e-09
Identities = 44/163 (26%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NG G G G G GPPG+DG GH G+R +
Sbjct: 949 GPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGET 1008
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G GE +G +G+ G G G G PGL+G G +GLPG
Sbjct: 1009 GPMGERGHPGPPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPV 1068
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G PG GP G
Sbjct: 1069 GALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQG 1111
Score = 57.4 bits (137), Expect = 3e-08
Identities = 47/164 (28%), Positives = 52/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G GS+GPPG G AG GER +
Sbjct: 1059 PGDRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGE 1118
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G++G G PG GP G PG G G G PG
Sbjct: 1119 KGLPGE------------KGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQ 1166
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD+ G G PG GP G
Sbjct: 1167 KGSKGDK------------------------GEQGPPGPTGPQG 1186
Score = 57.0 bits (136), Expect = 3e-08
Identities = 47/181 (25%), Positives = 58/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGPPG ++G G KG +
Sbjct: 741 PGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGI 800
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL------------ 319
G +GE G G +GE G +GP+G
Sbjct: 801 RGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGP 860
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 861 TGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGE 920
Query: 500 R 502
R
Sbjct: 921 R 921
Score = 56.2 bits (134), Expect = 6e-08
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G G PG+DGP G G G+ G +
Sbjct: 1249 GPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGDPGLPGEGGPLGPKGER 1308
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE G G KG PGD GP+G PG G G G PG
Sbjct: 1309 GEKGE---------------AGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEP 1353
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G +G PG GP G
Sbjct: 1354 GPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPG 1396
Score = 55.5 bits (132), Expect = 1e-07
Identities = 47/171 (27%), Positives = 53/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQA---GHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG G G PG G PG G+ G KGER
Sbjct: 1272 PGGIGNPGAVGEKGEPGEAGDPGLPGEGGPLGPKGERGEKGEAGPSGAAGPPGPKGPPGD 1331
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEP---GDKGPRGLPGLKGHNGL 346
G+ G G +G+ GEP G GP G PG G G
Sbjct: 1332 DGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGK 1391
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1392 RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI 1442
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/169 (26%), Positives = 55/169 (32%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GA G G G PG GPPG G+ G GE+
Sbjct: 1093 GPAGAAGPIGIPGRPGPQGPPGPAGEKGLPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPP 1152
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP--- 358
G G+ +G +GE+G PG GP+G G G +G G P
Sbjct: 1153 GEDGDKGEIGEPGQKGS---------KGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPR 1203
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GL G GD+ + G TG G +GP G
Sbjct: 1204 GQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPG 1252
Score = 53.5 bits (127), Expect = 4e-07
Identities = 45/175 (25%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKG------------ERXXXXXXXXXXXXXXX 151
G+ G PGE G G+PG GPPG G G +G E
Sbjct: 634 GLAGLPGEKGHRGDPGPSGPPGIPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPP 693
Query: 152 XXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLK 331
+ G +G G +G G PG+KGP G PGL
Sbjct: 694 GPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLP 753
Query: 332 GHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G PG G G + G G PG GP G
Sbjct: 754 GMPGADGPPGHPGKEG---------------------PPGEKGGQGPPGPQGPIG 787
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/165 (26%), Positives = 49/165 (29%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG +G PG G DG G DG G G G G R
Sbjct: 647 DPGPSGPPGIPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPG 706
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
GN G QG G GE G G GLPG+ G +G G PG
Sbjct: 707 PKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPG 766
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ DG G G G G
Sbjct: 767 KEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKG 811
>ref|NP_034056.1| collagen alpha-2(XI) chain [Mus musculus].
Length = 1650
Score = 135 bits (340), Expect = 7e-32
Identities = 123/458 (26%), Positives = 171/458 (37%), Gaps = 20/458 (4%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NG PG G+ G G+ GP GR G+ G KG+
Sbjct: 1223 GENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGLAGKPGPDGLR 1282
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL---------KGHN 340
G G G+ G +G+ G KG +G PGL +G
Sbjct: 1283 GLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEK 1342
Query: 341 GLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXX 520
G +GLPG G G + G G GA GPAG +
Sbjct: 1343 GDRGLPGPQGSPGQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKGEKGVQ 1402
Query: 521 XXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQ----------PRSPPSLRPKDYEVD 670
D + Q P SP L E+
Sbjct: 1403 GPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSKLIQDEEAVPTGGAPGSPAGLE----EIF 1458
Query: 671 ATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCD 850
+L SL +IE + P G++ +PARTC+DL+L HPE G YW+DPNQGC DA +V+C+
Sbjct: 1459 GSLDSLREEIEQMRRPAGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCN 1518
Query: 851 FST-GETCIRAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLA 1027
F+ GETC+ + + TQF Y ++ + QL
Sbjct: 1519 FTAGGETCVTPRDD-------------------------VTQFSY-VDSEGSPVGVVQLT 1552
Query: 1028 FMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVD 1207
F+RLL+ A Q+++Y C + G LK L+G+N+ EL E + D
Sbjct: 1553 FLRLLSVSAHQDVSYPCSGV-----SQDGPLK----LRGANEDELSPETSP--YVKEFRD 1601
Query: 1208 GCSKKTMNGEKHHFDINK*PSRLPILDIAPLDIGELTR 1321
GC +T G +LP+LD + D+G TR
Sbjct: 1602 GC--QTQQGRTVLEVRTPVLEQLPVLDASFADLGAPTR 1637
Score = 65.9 bits (159), Expect = 7e-11
Identities = 48/164 (29%), Positives = 56/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AG DG+ G G PG+ G G+KGE
Sbjct: 985 PGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGE--------------------------- 1017
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
HG G +G +G G GD+G RG G G GLQGLPG
Sbjct: 1018 HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGP 1077
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G G+ DG G PG VG G
Sbjct: 1078 SGEKGETGDGGPMGPPGPPGPRGPAGPNGADGPQGSPGGVGNLG 1121
Score = 65.5 bits (158), Expect = 9e-11
Identities = 45/172 (26%), Positives = 57/172 (33%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+PG +GPPG G G G + +
Sbjct: 592 PGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 651
Query: 185 HGN------RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +G+ +G +G G GD GP GL G KG G+
Sbjct: 652 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPTGLMGEKGKLGV 711
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GLPG G G + K G G+ G GP G R
Sbjct: 712 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQR 763
Score = 64.3 bits (155), Expect = 2e-10
Identities = 45/163 (27%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PG+AGR G G+DG G G+ G KG+R
Sbjct: 440 GLTGPPGKAGRRGRAGADGARGMPGEPGMKGDRGFDGLPGLP------------------ 481
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G G +G PG+ GPRGL G KG G+ G PG+
Sbjct: 482 GEKGQRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVR 541
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G GA+GP G
Sbjct: 542 GMDGPHGPKGSLGPQGEPGPPGQQGTPGAQGLPGPQGAIGPHG 584
Score = 63.2 bits (152), Expect = 5e-10
Identities = 50/163 (30%), Positives = 55/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
GV G PG GR G GS G PG G +G KG R
Sbjct: 710 GVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPT------------ 757
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG+ G GE+G PG +GP G PG KG G G GL
Sbjct: 758 GPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLP 817
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G + K G G PG VGP G
Sbjct: 818 GHPGQR---------------GEVGFQGKTGPPGPPGVVGPQG 845
Score = 62.0 bits (149), Expect = 1e-09
Identities = 50/185 (27%), Positives = 60/185 (32%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG G +G PG GPPG +DG GH G+R
Sbjct: 787 PGERGLPGPQGPNGFPGPKGPPGPAGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGT 846
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG---DKGPRGL--------- 319
+ G GE +G +G+ G PG GP GL
Sbjct: 847 AGESGPMGERGHSGPPGPPGEQGLPGTSGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGL 906
Query: 320 ------PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
PGLKG+ G G PG AG G++ G G PG
Sbjct: 907 PGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE 966
Query: 482 VGPAG 496
GP G
Sbjct: 967 KGPIG 971
Score = 59.7 bits (143), Expect = 5e-09
Identities = 41/163 (25%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G PG+ G PG G G GE+
Sbjct: 554 GPQGEPGPPGQQGTPGAQGLPGPQGAIGPHGEK--------------------------- 586
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG+ G +G +G G +GP G PG +G G+ G+ GL
Sbjct: 587 GARGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLK 646
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
GH G++ G G+ G GP G
Sbjct: 647 GHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKG 689
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/168 (26%), Positives = 54/168 (32%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G GE G G+PG G PG G G +GE+
Sbjct: 1119 NLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKG------------------------ 1154
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLK---GHNGLQG 352
+ G GE G G+ G PG+ GPRG G K G +G G
Sbjct: 1155 ESGQAGEAGPPGPKGPTGDNGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPG 1214
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G+ + G G PGAVG G
Sbjct: 1215 QPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPG 1262
Score = 55.8 bits (133), Expect = 7e-08
Identities = 48/165 (29%), Positives = 54/165 (32%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG G PG G+ G KG R
Sbjct: 1113 SPGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPR------------------------- 1147
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G RGE G GE G PG KGP G G KG+ G G PG
Sbjct: 1148 --GERGE------------------KGESGQAGEAGPPGPKGPTGDNGPKGNPGPVGFPG 1187
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ +DG GQPG+ GP G
Sbjct: 1188 DPGPPGE---------AGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1223
Score = 50.4 bits (119), Expect = 3e-06
Identities = 49/199 (24%), Positives = 58/199 (29%), Gaps = 33/199 (16%)
Frame = +2
Query: 2 NPGVNGAPG---------EAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXX 154
+PGV G PG E G G G GPPG G G G +
Sbjct: 1134 SPGVQGEPGVKGPRGERGEKGESGQAGEAGPPGPKGPTGDNGPKGNPGPVGFPGDPGPPG 1193
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPG------DKGPRG 316
G+RGE G RG G PG +KG +G
Sbjct: 1194 EAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKG 1253
Query: 317 LPGL------------------KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXX 442
PG G +GL+GLPG G G
Sbjct: 1254 DPGAVGAPGKTGPVGPAGLAGKPGPDGLRGLPGSVGQQG--------------------- 1292
Query: 443 XXXKDGRTGQPGAVGPAGI 499
G+ G PG VGP G+
Sbjct: 1293 RPGATGQAGPPGPVGPPGL 1311
Score = 49.3 bits (116), Expect = 7e-06
Identities = 37/125 (29%), Positives = 41/125 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G GE G DG G G PG G G G +
Sbjct: 496 PGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPK---------GPPGIPGPPGVRGMDGP 546
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
HG +G G +G G G+KG RG PGL G G GLPG
Sbjct: 547 HGPKGSLGPQGEPGPPGQQGTPGAQGLPGPQGAIGPHGEKGARGKPGLPGMPGSDGLPGH 606
Query: 365 AGHHG 379
G G
Sbjct: 607 PGKEG 611
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,932,994
Number of extensions: 745011
Number of successful extensions: 15250
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 7318
Number of HSP's successfully gapped: 316
Length of query: 453
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 348
Effective length of database: 12,463,779
Effective search space: 4337395092
Effective search space used: 4337395092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012837
(1359 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000080.2| collagen alpha-2(I) chain precursor [Homo sapie... 621 e-178
Alignment gi|NP_001835.3| collagen alpha-1(II) chain isoform 1 precursor ... 392 e-109
Alignment gi|NP_149162.2| collagen alpha-1(II) chain isoform 2 precursor ... 392 e-109
Alignment gi|NP_000079.2| collagen alpha-1(I) chain preproprotein [Homo s... 373 e-104
Alignment gi|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo... 340 2e-93
Alignment gi|NP_000384.2| collagen alpha-2(V) chain preproprotein [Homo s... 300 5e-82
Alignment gi|NP_542196.2| collagen alpha-1(XI) chain isoform B preproprot... 181 1e-45
Alignment gi|NP_001845.3| collagen alpha-1(XI) chain isoform A preproprot... 181 1e-45
Alignment gi|NP_001177638.1| collagen alpha-1(XI) chain isoform E preprop... 181 1e-45
Alignment gi|NP_542197.3| collagen alpha-1(XI) chain isoform C preproprot... 181 1e-45
>ref|NP_000080.2| collagen alpha-2(I) chain precursor [Homo sapiens].
Length = 1366
Score = 621 bits (1601), Expect = e-178
Identities = 313/438 (71%), Positives = 325/438 (74%), Gaps = 2/438 (0%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PGVNGAPGEAGRDGNPG+DGPPGRDGQ GHKGER
Sbjct: 914 SPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAG 973
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
KHGNRGE QGIRG+KGEPG+KGPRGLPGLKGHNGLQGLPG
Sbjct: 974 KHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPG 1033
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXX 541
+AGHHGDQ KDGRTG PG VGPAGIR
Sbjct: 1034 IAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPG 1093
Query: 542 XXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPE 721
YDFGY+GDFYRADQPRS PSLRPKDYEVDATLKSLNNQIETLLTPE
Sbjct: 1094 PPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPE 1153
Query: 722 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA 901
GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA
Sbjct: 1154 GSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPA 1213
Query: 902 KNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCK 1081
KNWYR+SK KKHVWLGETIN G+QFEYN+EGVT+KEMATQLAFMRLLAN+ASQNITYHCK
Sbjct: 1214 KNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLANYASQNITYHCK 1273
Query: 1082 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTMNGEKH--HFDI 1255
NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT K +
Sbjct: 1274 NSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKT 1333
Query: 1256 NK*PSRLPILDIAPLDIG 1309
NK PSRLP LDIAPLDIG
Sbjct: 1334 NK-PSRLPFLDIAPLDIG 1350
Score = 62.4 bits (150), Expect = 9e-10
Identities = 51/175 (29%), Positives = 59/175 (33%), Gaps = 9/175 (5%)
Frame = +2
Query: 2 NPGVNGA---------PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXX 154
NPG NG PG AG G PG G PG G AG G R
Sbjct: 299 NPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPA------- 351
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G++GE +G RG GE G GP G PGL+G
Sbjct: 352 -----------GSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRG 400
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G +GLPG G G GR G+PG +GP G+
Sbjct: 401 SPGSRGLPGADGRAG---VMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGL 452
Score = 60.8 bits (146), Expect = 3e-09
Identities = 49/168 (29%), Positives = 56/168 (33%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG+ G PG AGR G PG GPPG G AG +G R
Sbjct: 783 PGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR----------------------- 819
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G RG+ G GEKG G+ G G PG G GL G
Sbjct: 820 ----GPRGD------QGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGA 869
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
PG+ G G + G G PGAVG G+
Sbjct: 870 PGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGV 917
Score = 55.8 bits (133), Expect = 9e-08
Identities = 45/164 (27%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G G G G PG+ G AG +G K
Sbjct: 102 PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG------------PAGPPGKAGEDGHPGK 149
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G +G +G PG G G G++GHNGL GL G
Sbjct: 150 PGRPGERGVV------------------GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQ 191
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + GR G PG G G
Sbjct: 192 PGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 235
Score = 55.5 bits (132), Expect = 1e-07
Identities = 47/172 (27%), Positives = 54/172 (31%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ GA G G DGN G+ GPPG G G KGE+ +
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGER 573
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQ------GIRGEKGEPGDKGPRGLPGLKGHNGL- 346
G GE G RG G PG G +G PG+ G G
Sbjct: 574 GLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA 633
Query: 347 --QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GL G G +DG G PGAVG G
Sbjct: 634 GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPG 685
Score = 53.5 bits (127), Expect = 4e-07
Identities = 47/165 (28%), Positives = 56/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G+ G G PG DG PG G AG +GE
Sbjct: 455 SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG 514
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G RG QG +GE+G PG G +GLPG G G G PG
Sbjct: 515 LAGARG---APGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPG 571
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G HG+ + G G+ GA GP G
Sbjct: 572 ERGLHGE------------FGLPGPAGPRGERGPPGESGAAGPTG 604
Score = 52.8 bits (125), Expect = 7e-07
Identities = 45/164 (27%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +GA G G G+ G GPPG DG G G
Sbjct: 594 PGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGG 653
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE G+RGE G PG G RG P G G PG
Sbjct: 654 KGEKGE---------------------PGLRGEIGNPGRDGARGAP------GAVGAPGP 686
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG GD+ + G G G GPAG
Sbjct: 687 AGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
>ref|NP_001835.3| collagen alpha-1(II) chain isoform 1 precursor [Homo sapiens].
Length = 1487
Score = 392 bits (1006), Expect(2) = e-109
Identities = 212/449 (47%), Positives = 253/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 1025 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G+ G RGL G +G GLQGLPG
Sbjct: 1085 QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1144
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1204
Query: 545 XXXXXXXXXXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RADQ LR D EVDATLKSL
Sbjct: 1205 PGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAG--GLRQHDAEVDATLKSL 1262
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE++ +PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1263 NNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1322
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P N+P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+
Sbjct: 1323 CVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLS 1382
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T
Sbjct: 1383 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHT 1442
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1443 GKWGKTVIEYRSQKTSRLPIIDIAPMDIG 1471
Score = 23.9 bits (50), Expect(2) = e-109
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+Q+ VD+GPVCF
Sbjct: 1474 EQEFGVDIGPVCF 1486
Score = 66.2 bits (160), Expect = 7e-11
Identities = 49/164 (29%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE G G PG GP G G AG +G+R
Sbjct: 458 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP----- 512
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 513 -GNRG------------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 66.2 bits (160), Expect = 7e-11
Identities = 51/170 (30%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 952
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE +GI G G+ G++G GLPG G G
Sbjct: 953 P------GEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 1006
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
QG PG +G G + GR G PGA GP G
Sbjct: 1007 QGAPGASGDRG---------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Score = 62.0 bits (149), Expect = 1e-09
Identities = 49/176 (27%), Positives = 54/176 (30%), Gaps = 12/176 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSD------------GPPGRDGQAGHKGERXXXXXXXXXXXXXX 148
PG GAPG G GNPG GPPG G+ G GE
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271
Query: 149 XXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL 328
G +G G GE G PG GPRGLPG
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 331
Query: 329 KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G G G G G+ G + G G PG VGPAG
Sbjct: 332 RGRTGPAGAAGARGNDG------------------------QPGPAGPPGPVGPAG 363
Score = 62.0 bits (149), Expect = 1e-09
Identities = 47/166 (28%), Positives = 57/166 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G+DG G+ GPPG G AG +GE+
Sbjct: 623 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 682
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RGE+G PG++G G GL+G GL G PG
Sbjct: 683 QGVPGEAGAPGLV---------------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 727
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G G G PGA GP G++
Sbjct: 728 DGPKG------------------------ASGPAGPPGAQGPPGLQ 749
Score = 60.5 bits (145), Expect = 4e-09
Identities = 45/172 (26%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G AG G +
Sbjct: 709 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 768
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 769 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 828
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 880
Score = 59.7 bits (143), Expect = 6e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 576 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 635
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G PG +G G G PGL
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 695
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GPAG
Sbjct: 696 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAG 738
Score = 56.2 bits (134), Expect = 7e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG++GA GEAG G G G PG +G G G R
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA--------- 343
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G+ G +GE G G +GP G G +G G G PG
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ G G PG G G
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG 447
Score = 56.2 bits (134), Expect = 7e-08
Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G++
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK--------------------------- 857
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +G G PG +GP G+ G KG G QG PG
Sbjct: 858 GDAG---------------------APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKD------------GRTGQPGAVGPAG 496
G G KD GR G+PG GPAG
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG 951
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 547 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE----------------------- 583
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+ G G G GEKG PG G RGLPG G G G
Sbjct: 584 -DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 642
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G++ + G+ G G G AG
Sbjct: 643 PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 690
>ref|NP_149162.2| collagen alpha-1(II) chain isoform 2 precursor [Homo sapiens].
Length = 1418
Score = 392 bits (1006), Expect(2) = e-109
Identities = 212/449 (47%), Positives = 253/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GR+G+PG+DGPPGRDG AG KG+R K
Sbjct: 956 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G+ G RGL G +G GLQGLPG
Sbjct: 1016 QGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1075
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G GDQ KDG G PG +GP G R
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1135
Query: 545 XXXXXXXXXXXXXYDFG-YEG-----------DFYRADQPRSPPSLRPKDYEVDATLKSL 688
D + G + RADQ LR D EVDATLKSL
Sbjct: 1136 PGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAG--GLRQHDAEVDATLKSL 1193
Query: 689 NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET 868
NNQIE++ +PEGSRKNPARTCRDL+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGET
Sbjct: 1194 NNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGET 1253
Query: 869 CIRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
C+ P N+P KNW+ + SK KKH+W GETINGG F Y + + Q+ F+RLL+
Sbjct: 1254 CVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLS 1313
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
SQNITYHCKNSIAY+DE GNLKKA+++QGSNDVE+ AEGNSRFTYT L DGC+K T
Sbjct: 1314 TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHT 1373
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + ++ SRLPI+DIAP+DIG
Sbjct: 1374 GKWGKTVIEYRSQKTSRLPIIDIAPMDIG 1402
Score = 23.9 bits (50), Expect(2) = e-109
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+Q+ VD+GPVCF
Sbjct: 1405 EQEFGVDIGPVCF 1417
Score = 66.2 bits (160), Expect = 7e-11
Identities = 49/164 (29%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE G G PG GP G G AG +G+R
Sbjct: 389 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP----- 443
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GNRG G+ G KG PG++GP GL G KG NG G PG
Sbjct: 444 -GNRG------------------FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 484
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + +DGR G PG G G
Sbjct: 485 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Score = 66.2 bits (160), Expect = 7e-11
Identities = 51/170 (30%), Positives = 60/170 (35%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGR------DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G PG AGR +GNPG GPPG G+ G KG R
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 883
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL 346
G +GE +GI G G+ G++G GLPG G G
Sbjct: 884 P------GEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK 937
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
QG PG +G G + GR G PGA GP G
Sbjct: 938 QGAPGASGDRG---------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Score = 62.0 bits (149), Expect = 1e-09
Identities = 49/176 (27%), Positives = 54/176 (30%), Gaps = 12/176 (6%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSD------------GPPGRDGQAGHKGERXXXXXXXXXXXXXX 148
PG GAPG G GNPG GPPG G+ G GE
Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202
Query: 149 XXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL 328
G +G G GE G PG GPRGLPG
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 262
Query: 329 KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G G G G G+ G + G G PG VGPAG
Sbjct: 263 RGRTGPAGAAGARGNDG------------------------QPGPAGPPGPVGPAG 294
Score = 62.0 bits (149), Expect = 1e-09
Identities = 47/166 (28%), Positives = 57/166 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G+DG G+ GPPG G AG +GE+
Sbjct: 554 PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD 613
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G RGE+G PG++G G GL+G GL G PG
Sbjct: 614 QGVPGEAGAPGLV---------------GPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 658
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G G G PGA GP G++
Sbjct: 659 DGPKG------------------------ASGPAGPPGAQGPPGLQ 680
Score = 60.5 bits (145), Expect = 4e-09
Identities = 45/172 (26%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG G G G G PG+DGP G G AG G +
Sbjct: 640 SPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRG 699
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNG 343
G +G G GEKGE G GP RG PG +G G
Sbjct: 700 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 759
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G G AG G G +G PG GP G+
Sbjct: 760 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 811
Score = 59.7 bits (143), Expect = 6e-09
Identities = 44/163 (26%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G +GAPGE GR G PG G G+ G G G + K
Sbjct: 507 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD 566
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G G +G G PG G G PG +G G G PGL
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV 626
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ G G GA GPAG
Sbjct: 627 GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAG 669
Score = 56.2 bits (134), Expect = 7e-08
Identities = 43/164 (26%), Positives = 51/164 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG++GA GEAG G G G PG +G G G R
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA--------- 274
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
GN G+ G +GE G G +GP G G +G G G PG
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 334
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+ G G PG G G
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG 378
Score = 56.2 bits (134), Expect = 7e-08
Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G PG+DG PG G+ G G++
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK--------------------------- 788
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G+ G G +G G PG +GP G+ G KG G QG PG
Sbjct: 789 GDAG---------------------APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKD------------GRTGQPGAVGPAG 496
G G KD GR G+PG GPAG
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG 882
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGA---PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G PG G G PG GP G+ G +G GE
Sbjct: 478 DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE----------------------- 514
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
+ G G G GEKG PG G RGLPG G G G
Sbjct: 515 -DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 573
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G++ + G+ G G G AG
Sbjct: 574 PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 621
>ref|NP_000079.2| collagen alpha-1(I) chain preproprotein [Homo sapiens].
Length = 1464
Score = 373 bits (958), Expect(2) = e-104
Identities = 197/449 (43%), Positives = 253/449 (56%), Gaps = 14/449 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PGE+GR+G PG++G PGRDG G KG+R K
Sbjct: 1003 PGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGK 1062
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G RG+ G +G +GLQG PG
Sbjct: 1063 SGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGP 1122
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G+Q KDG G PG +GP G R
Sbjct: 1123 PGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP 1182
Query: 545 XXXXXXXXXXXXXYDFGY-----------EGDFYRADQPRSPPSLRPKDYEVDATLKSLN 691
+DF + G +YRAD +R +D EVD TLKSL+
Sbjct: 1183 PGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLS 1239
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
QIE + +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC
Sbjct: 1240 QQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETC 1299
Query: 872 IRAQPENIPAKNWY--RNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1045
+ ++ KNWY +N K K+HVW GE++ G QFEY +G ++A QL F+RL++
Sbjct: 1300 VYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMS 1359
Query: 1046 NHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT 1225
ASQNITYHCKNS+AYMD++TGNLKKA++LQGSN++E+ AEGNSRFTY+V VDGC+ T
Sbjct: 1360 TEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHT 1419
Query: 1226 MNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
K + SRLPI+D+APLD+G
Sbjct: 1420 GAWGKTVIEYKTTKTSRLPIIDVAPLDVG 1448
Score = 23.9 bits (50), Expect(2) = e-104
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
DQ+ DVGPVCF
Sbjct: 1451 DQEFGFDVGPVCF 1463
Score = 65.5 bits (158), Expect = 1e-10
Identities = 47/165 (28%), Positives = 55/165 (33%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GA G AG+DG G+ GPPG G AG +GE+
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ-------------------------- 634
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G G QG+ G+ G PG G RG G G G+QG PG
Sbjct: 635 -GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 693
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
AG G G G PG G AG+
Sbjct: 694 AGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL 738
Score = 65.1 bits (157), Expect = 1e-10
Identities = 51/172 (29%), Positives = 58/172 (33%), Gaps = 6/172 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG G G PG G PG G G +G K
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP---------------------PGPPGK 228
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGL 346
+G+ GE G GE+G PG +G RGLPG +KGH G
Sbjct: 229 NGDDGEAGKP------------------GRPGERGPPGPQGARGLPGTAGLPGMKGHRGF 270
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
GL G G G G G+PGA GPAG R
Sbjct: 271 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Score = 62.4 bits (150), Expect = 9e-10
Identities = 47/166 (28%), Positives = 53/166 (31%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS G PG DG AG KG +
Sbjct: 475 PGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG---------E 525
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G GE G G G+ G GP G PG +G G+ G PG
Sbjct: 526 AGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGP 585
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G G+ + G G PG GPAG R
Sbjct: 586 KGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 631
Score = 61.6 bits (148), Expect = 2e-09
Identities = 45/164 (27%), Positives = 50/164 (30%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G G G G G GPPG GQ G G K
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG G G GE G++GP G PG +G G G PG
Sbjct: 595 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE 654
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
AG G+Q + G G PG GP G
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 698
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/163 (29%), Positives = 51/163 (31%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG GPPG G AG KG
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP 964
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE G GE+G PG GP GL G G +G +G PG
Sbjct: 965 GQRGE---RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE 1021
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G G PG VGPAG
Sbjct: 1022 GSPG---RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1061
Score = 59.3 bits (142), Expect = 8e-09
Identities = 44/163 (26%), Positives = 55/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NGAPG AG G PG+ GP G G G G +
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAP------------------ 439
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++G+ +G RG +GEPG G G PG +G G +G PG
Sbjct: 440 GSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGAD 499
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G G PGA G G
Sbjct: 500 GVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/174 (25%), Positives = 58/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGA------PGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXX 163
+PG G PGEAG+ G G G G G +G +GER
Sbjct: 639 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 698
Query: 164 XXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQ---GIRGEKGEPGDKGPRGLPGLKG 334
G +G+ + G+ G KG+ GD GP+G G G
Sbjct: 699 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPG 758
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G++GL G G G G G+PG GPAG
Sbjct: 759 KDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAG 812
Score = 55.1 bits (131), Expect = 2e-07
Identities = 43/166 (25%), Positives = 50/166 (30%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G GA G G G PG+ G PG G+ G G
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETG 914
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G GE G GEKG PG GP G PG G G+ G G
Sbjct: 915 PAGRPGE---------------VGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRG 959
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+ G G + G G PG +GP G+
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 1005
Score = 54.3 bits (129), Expect = 3e-07
Identities = 45/171 (26%), Positives = 51/171 (29%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
+PG NGAPG+ G G PG G PG G AG +G
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG 350
Query: 182 KHGN------RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNG 343
G RG G G G+PG KG G PG+ G
Sbjct: 351 AKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA---G 407
Query: 344 LQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PG G G Q G G+PG VG G
Sbjct: 408 APGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQG 458
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/173 (24%), Positives = 51/173 (29%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG GAPG+ G G G GP G G G +GE
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGD 831
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL---------KGH 337
G +G+ G +G +G G G G PG G+
Sbjct: 832 AGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGN 891
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G PG AG G + G G PGA GPAG
Sbjct: 892 AGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944
Score = 53.1 bits (126), Expect = 6e-07
Identities = 45/165 (27%), Positives = 49/165 (29%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G GAPG G G G GP G G G GE
Sbjct: 432 NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG 491
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
G G +G GE+G PG GP+G PG G G GLPG
Sbjct: 492 SRGFPG---------------ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPG 536
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG+TG PG G G
Sbjct: 537 AKGLTGS------------------PGSPGPDGKTGPPGPAGQDG 563
>ref|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo sapiens].
Length = 1466
Score = 340 bits (872), Expect = 2e-93
Identities = 194/453 (42%), Positives = 240/453 (52%), Gaps = 18/453 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G GE GRDGNPGSDG PGRDG G KG+R K
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+RGE QG RG+KGE G++G G+ G +G G G PG
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G G Q KDG +G PG +GP G R
Sbjct: 1121 PGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1180
Query: 545 XXXXXXXXXXXXX------------YDFGYE--GDF--YRADQPRSPPSLRPKDYEVDAT 676
G E G F Y D+P + E+ +
Sbjct: 1181 PGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYGDEPMD---FKINTDEIMTS 1237
Query: 677 LKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFS 856
LKS+N QIE+L++P+GSRKNPAR CRDL+ HPE SG YW+DPNQGC +DAIKV+C+
Sbjct: 1238 LKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNME 1297
Query: 857 TGETCIRAQPENIPAKNWYRNSKV-KKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFM 1033
TGETCI A P N+P K+W+ +S KKHVW GE+++GG QF Y + + QLAF+
Sbjct: 1298 TGETCISANPLNVPRKHWWTDSSAEKKHVWFGESMDGGFQFSYGNPELPEDVLDVQLAFL 1357
Query: 1034 RLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGC 1213
RLL++ ASQNITYHCKNSIAYMD+ +GN+KKA+ L GSN+ E AEGNS+FTYTVL DGC
Sbjct: 1358 RLLSSRASQNITYHCKNSIAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGC 1417
Query: 1214 SKKTMNGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
+K T K F+ + RLPI+DIAP DIG
Sbjct: 1418 TKHTGEWSKTVFEYRTRKAVRLPIVDIAPYDIG 1450
Score = 65.9 bits (159), Expect = 9e-11
Identities = 50/167 (29%), Positives = 56/167 (33%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG +G G+PGS GPPG GQAG G
Sbjct: 179 PGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGP------PGPPGAIGPSGPAGKDGE 232
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
+ G GE +G RG G G+KG G PGLKG NGL G
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G G + G GQPG GP G
Sbjct: 293 NGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 64.3 bits (155), Expect = 2e-10
Identities = 45/164 (27%), Positives = 57/164 (34%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG G G+ G GPPG G++G G
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPG------------------------PPGP 568
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG+ G GE+G PG GP+G PG G G QG PG
Sbjct: 569 SGPRGQ------PGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGP 622
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD+ ++G+ G+PG G AG
Sbjct: 623 TGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Score = 60.8 bits (146), Expect = 3e-09
Identities = 49/185 (26%), Positives = 56/185 (30%), Gaps = 21/185 (11%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG PGE G G+ G+ G PG G AG GER
Sbjct: 650 PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGA 709
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG------------------- 307
G G G +G+KGEPG G
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP 769
Query: 308 --PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGA 481
P G PG KG G GLPG+AG G + G G+ GA
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGA 829
Query: 482 VGPAG 496
G G
Sbjct: 830 PGEKG 834
Score = 59.7 bits (143), Expect = 6e-09
Identities = 46/164 (28%), Positives = 53/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NGAPG G G PG G PG G AG +G
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGN---DGARGSDGQPGPPGPPGTAGFPGS 346
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +GE QG G +G PG G G PG KG G G+PG
Sbjct: 347 PGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA 406
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + K+G G+PG G G
Sbjct: 407 PGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450
Score = 59.3 bits (142), Expect = 8e-09
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPG---------RDGQA---GHKGERXXXXXXXXXXXXX 145
+PG G PGE G+ G G GPPG +DG++ G GER
Sbjct: 196 SPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAG 255
Query: 146 XXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPG 325
G GE G+ GE G PG GPRG PG
Sbjct: 256 IPGFPGMKGHRGFDGRNGE---------KGETGAPGLKGENGLPGENGAPGPMGPRGAPG 306
Query: 326 LKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
+G GL G G G+ G + DG+ G PG G AG
Sbjct: 307 ERGRPGLPGAAGARGNDGAR---------------------GSDGQPGPPGPPGTAG 342
Score = 59.3 bits (142), Expect = 8e-09
Identities = 45/164 (27%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG +G PG+ G G G GPPG GQ G KGE
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE---------------GGAPGLPGIAGP 793
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G+ GE G +GE+G PG+KG G PG+ G G G G
Sbjct: 794 RGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGP 853
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + G G PG GP+G
Sbjct: 854 PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Score = 57.4 bits (137), Expect = 3e-08
Identities = 41/166 (24%), Positives = 54/166 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G PGS+G PG G +G G+ +
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQ 928
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G +G +G+ G G PG +G G G+KG +G G GL
Sbjct: 929 PGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGL 988
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
+G G DG G+ G+ G G R
Sbjct: 989 SGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDR 1034
Score = 56.2 bits (134), Expect = 7e-08
Identities = 46/164 (28%), Positives = 50/164 (30%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G GAPGE G G PG GPPG G AG G +
Sbjct: 825 GERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGV------------------------K 860
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RG G G G G G G PG G+ G G PG++
Sbjct: 861 GERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS 920
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G GD G G PGA GP GI
Sbjct: 921 GPKGD---------------AGQPGEKGSPGAQGPPGAPGPLGI 949
Score = 55.8 bits (133), Expect = 9e-08
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G NGAPG G G PG +G G G G +GE K
Sbjct: 420 GANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG------------KD 467
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G+ GE G GE+G PG +GP G+PG KG G +G P
Sbjct: 468 GSPGEPGANGLP---------------GAAGERGAPGFRGPAGPNGIPGEKGPAGERGAP 512
Query: 359 GLAGHH---GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G AG G+ DG+ G PG+ G +G
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
>ref|NP_000384.2| collagen alpha-2(V) chain preproprotein [Homo sapiens].
Length = 1499
Score = 300 bits (769), Expect(2) = 5e-82
Identities = 175/448 (39%), Positives = 230/448 (51%), Gaps = 13/448 (2%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG NG GE G +G G+DG PGRDG G +G+R
Sbjct: 1037 PGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGD 1096
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG+ QG RG+KG+ GD+G RG G +G GLQGLPG
Sbjct: 1097 AGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGP 1156
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXX 544
G +G+Q K+G G G +GP G+R
Sbjct: 1157 PGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGE 1216
Query: 545 XXXXXXXXXXXXX----------YDFGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLN 691
YD + ++ P + K D V ATLKSL+
Sbjct: 1217 PGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLS 1276
Query: 692 NQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETC 871
+QIET+ +P+GS+K+PARTC DL+L H SG YWIDPNQG DAIKVYC+ TGETC
Sbjct: 1277 SQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMETGETC 1336
Query: 872 IRAQPENIPAKNWYRN-SKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLAN 1048
I A P ++P K W+ + S K VW G +N G+QF Y + + TQ+ F+RLL+
Sbjct: 1337 ISANPSSVPRKTWWASKSPDNKPVWYGLDMNRGSQFAYG-DHQSPNTAITQMTFLRLLSK 1395
Query: 1049 HASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTM 1228
ASQNITY CKNS+ YMD++ NLKKAV+L+G+ND+++ AEGN RF Y VL D CSK+
Sbjct: 1396 EASQNITYICKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIRFRYIVLQDTCSKRNG 1455
Query: 1229 NGEKHHFDI-NK*PSRLPILDIAPLDIG 1309
N K F+ + +RLPI+D+AP+D+G
Sbjct: 1456 NVGKTVFEYRTQNVARLPIIDLAPVDVG 1483
Score = 23.9 bits (50), Expect(2) = 5e-82
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
DQ+ V++GPVCF
Sbjct: 1486 DQEFGVEIGPVCF 1498
Score = 65.1 bits (157), Expect = 1e-10
Identities = 47/164 (28%), Positives = 54/164 (32%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PGE G+ G+ G G PG G G +GER
Sbjct: 680 PGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNP----------------------- 716
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RGE +G G G PGD GP GL G+ G G+ G PG
Sbjct: 717 -GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 775
Query: 365 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G DG G PG +GP G
Sbjct: 776 KGDRG------------GIGEKGAEGTAGNDGARGLPGPLGPPG 807
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/186 (28%), Positives = 58/186 (31%), Gaps = 21/186 (11%)
Frame = +2
Query: 8 GVNGAPGEAGRDGN---PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXX 178
G GA G AG DG PG GPPG G G KGE
Sbjct: 783 GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGE---------------PGPRGLVGPP 827
Query: 179 XKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG----------------- 307
GN G G++GE GEPG KG
Sbjct: 828 GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPH 887
Query: 308 -PRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAV 484
P G+PGLKG G QG PG G G G G+PG
Sbjct: 888 GPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPA---------GPLGEPGKE 938
Query: 485 GPAGIR 502
GP G+R
Sbjct: 939 GPPGLR 944
Score = 62.0 bits (149), Expect = 1e-09
Identities = 47/173 (27%), Positives = 57/173 (32%), Gaps = 9/173 (5%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG AGR G PG G PG G G G+
Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPP----------------------- 941
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---------RGLPGLKGH 337
G RG+ +G GE G+PG GP RG+ G+ G
Sbjct: 942 -GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 1000
Query: 338 NGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G +G+PGL G G +G G+PG GPAG
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAG 1053
Score = 59.3 bits (142), Expect = 8e-09
Identities = 46/172 (26%), Positives = 55/172 (31%), Gaps = 9/172 (5%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G DG PG+ GP G G +G G
Sbjct: 414 GSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVP 473
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQ 349
G +GE +G RG +G+PG GP RG PG +G G
Sbjct: 474 GFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSD 533
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGR---TGQPGAVGPAG 496
GLPG G G++ G TG PG GP G
Sbjct: 534 GLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEG 585
Score = 59.3 bits (142), Expect = 8e-09
Identities = 47/174 (27%), Positives = 58/174 (33%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNP---GSDGP------PGRDGQAGHKGERXXXXXXXXXXXXXXXX 154
+PG +G PG AG G+P GS GP PG G G KGE
Sbjct: 436 SPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIG 495
Query: 155 XXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKG 334
G+ G G+ G KG G++GP G G KG
Sbjct: 496 PPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKG 555
Query: 335 HNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G PG G G + +DGR G PG++G G
Sbjct: 556 SQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRG 609
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/179 (26%), Positives = 56/179 (31%), Gaps = 15/179 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG G PG G G+ G +GPPG+ G+ G G
Sbjct: 239 PGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 298
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDK---------------GPRGL 319
G+RG +G +GE G PG K GPRG+
Sbjct: 299 KGHRGH------------------KGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGM 340
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG +G G QG PG G HG G G GA GP G
Sbjct: 341 PGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEG 399
Score = 57.8 bits (138), Expect = 2e-08
Identities = 49/177 (27%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGEAG G PG G PG+DG+ G G
Sbjct: 624 GDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA--------------------- 662
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---------KGPRGLPGLKGHN 340
G RGE G G++G PGD +G RG PG +G
Sbjct: 663 GERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEP 722
Query: 341 GLQGLPG---LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G+ GLPG +AG HG G +G PG GP G++
Sbjct: 723 GITGLPGEKGMAGGHGPDGPKG------------------SPGPSGTPGDTGPPGLQ 761
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/170 (26%), Positives = 52/170 (30%), Gaps = 6/170 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXK 184
PG+ G PG GR G+ G GPPG G G GE +
Sbjct: 941 PGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQ 1000
Query: 185 HGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL 364
G RG +G G G PG GP G PG +G G G PG
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGR 1060
Query: 365 ------AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD G+ G PG+ GP G
Sbjct: 1061 DGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIG 1110
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/168 (26%), Positives = 53/168 (31%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 NPGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 172
+PG G G G + G PG DG PGR+G G G
Sbjct: 244 DPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRG 303
Query: 173 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 352
G +GE G RG GE G GP+G PG +G +G+ G
Sbjct: 304 HKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPG 363
Query: 353 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG G G +G GQ G GP G
Sbjct: 364 KPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPG 411
>ref|NP_542196.2| collagen alpha-1(XI) chain isoform B preproprotein [Homo sapiens].
Length = 1818
Score = 181 bits (458), Expect(2) = 1e-45
Identities = 140/455 (30%), Positives = 188/455 (41%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1356 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1475
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1476 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1535
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1536 KGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSL 1595
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1596 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1655
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1656 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1710
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N+ F T L DG
Sbjct: 1711 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEM-SYDNNPFIKT-LYDG 1768
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++PI+D+ D G+
Sbjct: 1769 CASR-KGYEKTVIEINTPKIDQVPIVDVMINDFGD 1802
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1804 NQKFGFEVGPVCF 1816
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 1005 PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1064
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1065 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1124
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1125 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1171
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 692 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 751
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 752 QSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 811
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 812 EVGQIGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 844
Score = 63.9 bits (154), Expect = 3e-10
Identities = 46/163 (28%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1120 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1158
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1159 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1218
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG+VG G
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1261
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 723 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV 782
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 783 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 842
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 843 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 902
Query: 500 R 502
R
Sbjct: 903 R 903
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 931 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 990
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 991 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 1050
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1051 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1099
Score = 59.7 bits (143), Expect = 6e-09
Identities = 41/163 (25%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G G DGPPG G G +GE +
Sbjct: 667 GPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEK 726
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G +G G PG +GP G PG +G G G+ GL
Sbjct: 727 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK 786
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ + G G+ G GP G
Sbjct: 787 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG 829
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1213 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGV--------- 1263
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1264 GEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1323
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1324 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1363
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/163 (28%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER
Sbjct: 598 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD--------------- 642
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G+ GE G G GPRG PG G G+ G+ G
Sbjct: 643 GMRGEDGEIGP---------------RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP 687
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ G G PG GP G
Sbjct: 688 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 730
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1254 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1313
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1314 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1373
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1374 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1424
Score = 54.3 bits (129), Expect = 3e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1285 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1344
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1345 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1404
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1405 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1451
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 904 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 963
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 964 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1023
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 1024 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1074
>ref|NP_001845.3| collagen alpha-1(XI) chain isoform A preproprotein [Homo sapiens].
Length = 1806
Score = 181 bits (458), Expect(2) = 1e-45
Identities = 140/455 (30%), Positives = 188/455 (41%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1344 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1463
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1464 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1523
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1524 KGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSL 1583
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1584 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1643
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1644 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1698
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N+ F T L DG
Sbjct: 1699 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEM-SYDNNPFIKT-LYDG 1756
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++PI+D+ D G+
Sbjct: 1757 CASR-KGYEKTVIEINTPKIDQVPIVDVMINDFGD 1790
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1792 NQKFGFEVGPVCF 1804
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 993 PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1052
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1053 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1112
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1113 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1159
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 680 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 739
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 740 QSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 799
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 800 EVGQIGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 832
Score = 63.9 bits (154), Expect = 3e-10
Identities = 46/163 (28%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1108 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1146
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1147 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1206
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG+VG G
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1249
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 711 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV 770
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 771 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 830
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 831 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 890
Query: 500 R 502
R
Sbjct: 891 R 891
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 919 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 978
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 979 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 1038
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1039 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1087
Score = 59.7 bits (143), Expect = 6e-09
Identities = 41/163 (25%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G G DGPPG G G +GE +
Sbjct: 655 GPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEK 714
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G +G G PG +GP G PG +G G G+ GL
Sbjct: 715 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK 774
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ + G G+ G GP G
Sbjct: 775 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG 817
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1201 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGV--------- 1251
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1252 GEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1311
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1312 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1351
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/163 (28%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER
Sbjct: 586 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD--------------- 630
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G+ GE G G GPRG PG G G+ G+ G
Sbjct: 631 GMRGEDGEIGP---------------RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP 675
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ G G PG GP G
Sbjct: 676 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 718
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1242 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1301
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1302 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1361
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1362 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1412
Score = 54.3 bits (129), Expect = 3e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1273 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1332
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1333 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1392
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1393 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1439
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 892 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 951
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 952 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1011
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 1012 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1062
>ref|NP_001177638.1| collagen alpha-1(XI) chain isoform E preproprotein [Homo sapiens].
Length = 1767
Score = 181 bits (458), Expect(2) = 1e-45
Identities = 140/455 (30%), Positives = 188/455 (41%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1305 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1424
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1425 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1484
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1485 KGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSL 1544
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1545 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1604
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1605 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1659
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N+ F T L DG
Sbjct: 1660 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEM-SYDNNPFIKT-LYDG 1717
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++PI+D+ D G+
Sbjct: 1718 CASR-KGYEKTVIEINTPKIDQVPIVDVMINDFGD 1751
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1753 NQKFGFEVGPVCF 1765
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 954 PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 1013
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 1014 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 1073
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 1074 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1120
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 641 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 700
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 701 QSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 760
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 761 EVGQIGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 793
Score = 63.9 bits (154), Expect = 3e-10
Identities = 46/163 (28%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 1069 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1107
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1108 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1167
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG+VG G
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1210
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 672 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV 731
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 732 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 791
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 792 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 851
Query: 500 R 502
R
Sbjct: 852 R 852
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 880 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 939
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 940 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 999
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 1000 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1048
Score = 59.7 bits (143), Expect = 6e-09
Identities = 41/163 (25%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G G DGPPG G G +GE +
Sbjct: 616 GPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEK 675
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G +G G PG +GP G PG +G G G+ GL
Sbjct: 676 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK 735
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ + G G+ G GP G
Sbjct: 736 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG 778
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1162 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGV--------- 1212
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1213 GEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1272
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1273 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1312
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/163 (28%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER
Sbjct: 547 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD--------------- 591
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G+ GE G G GPRG PG G G+ G+ G
Sbjct: 592 GMRGEDGEIGP---------------RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP 636
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ G G PG GP G
Sbjct: 637 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 679
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1203 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1262
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1263 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1322
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1323 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1373
Score = 54.3 bits (129), Expect = 3e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1234 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1293
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1294 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1353
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1354 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1400
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 853 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 912
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 913 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 972
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 973 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 1023
>ref|NP_542197.3| collagen alpha-1(XI) chain isoform C preproprotein [Homo sapiens].
Length = 1690
Score = 181 bits (458), Expect(2) = 1e-45
Identities = 140/455 (30%), Positives = 188/455 (41%), Gaps = 19/455 (4%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGPPG------RDGQAGHKGERXXXXXXXXXXXXXXXXXXXX 166
PG G GEAG G PG GPPG R G+ G KGE
Sbjct: 1228 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1287
Query: 167 XXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGL------ 328
G G G+ G KG+PG KG +G PGL
Sbjct: 1288 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGP 1347
Query: 329 ---KGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G G +GLPG G G + G G G+ GPAG
Sbjct: 1348 PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQ 1407
Query: 500 RXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATL 679
+ + +AD + E+ +L
Sbjct: 1408 KGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSL 1467
Query: 680 KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-S 856
SL IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S
Sbjct: 1468 NSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTS 1527
Query: 857 TGETCI--RAQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAF 1030
GETCI + E + +W K K W E G ++EG + Q+ F
Sbjct: 1528 GGETCIYPDKKSEGVRISSW---PKEKPGSWFSEFKRGKLLSYLDVEGNSIN--MVQMTF 1582
Query: 1031 MRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDG 1210
++LL A QN TYHC S A+ D +G+ KA+ GSND E+ + N+ F T L DG
Sbjct: 1583 LKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEM-SYDNNPFIKT-LYDG 1640
Query: 1211 CSKKTMNGEKHHFDINK*P-SRLPILDIAPLDIGE 1312
C+ + EK +IN ++PI+D+ D G+
Sbjct: 1641 CASR-KGYEKTVIEINTPKIDQVPIVDVMINDFGD 1674
Score = 21.9 bits (45), Expect(2) = 1e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 1315 DQKSXVDVGPVCF 1353
+QK +VGPVCF
Sbjct: 1676 NQKFGFEVGPVCF 1688
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 3/167 (1%)
Frame = +2
Query: 5 PGVNGAPGEAGRD---GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G PG AG++ G+PG G G+DG AG +G
Sbjct: 877 PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGP 936
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 355
G+ GE G GEKG PG+KGP+G G G G GL
Sbjct: 937 PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGL 996
Query: 356 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
PG AG G ++G G PG GP G
Sbjct: 997 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1043
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/165 (27%), Positives = 55/165 (33%)
Frame = +2
Query: 2 NPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX 181
N G G PG G+ GNPG G PG G G GE+
Sbjct: 564 NMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEG 623
Query: 182 KHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPG 361
+ G +G G+RG KG G+KG G PG KG GL+G G
Sbjct: 624 QSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRG 683
Query: 362 LAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G + + G TG PG G AG
Sbjct: 684 EVGQIGPR------------GEDGPEGPKGRAGPTGDPGPSGQAG 716
Score = 63.9 bits (154), Expect = 3e-10
Identities = 46/163 (28%), Positives = 57/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG AG G+PG DG G G+ G KG + ++
Sbjct: 992 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG---------------------EN 1030
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G G +G +G G+ GD+G RG PG G GLQGLPG
Sbjct: 1031 GPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPP 1090
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ DG G PG+VG G
Sbjct: 1091 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVG 1133
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/181 (26%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGSDGP---PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G G+ G G PG+DGP PG++GQ+G KG
Sbjct: 595 PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV 654
Query: 176 XXKHGNRGE------------XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGL 319
G++GE +G +G G GD GP G
Sbjct: 655 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 714
Query: 320 PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
G KG G+ GLPG G G + K G GQ G GP G
Sbjct: 715 AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS 774
Query: 500 R 502
R
Sbjct: 775 R 775
Score = 61.2 bits (147), Expect = 2e-09
Identities = 46/169 (27%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G G G G GPPG+DG GH G+R +
Sbjct: 803 GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGET 862
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQ 349
G GE +G +G+ G+ G G RG PG +G G Q
Sbjct: 863 GPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQ 922
Query: 350 GLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G PGL G G Q GR G G GPAG
Sbjct: 923 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 971
Score = 59.7 bits (143), Expect = 6e-09
Identities = 41/163 (25%), Positives = 54/163 (33%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PG G+ G G DGPPG G G +GE +
Sbjct: 539 GPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEK 598
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +G+ G +G G PG +GP G PG +G G G+ GL
Sbjct: 599 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLK 658
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G++ + G G+ G GP G
Sbjct: 659 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKG 701
Score = 58.9 bits (141), Expect = 1e-08
Identities = 45/163 (27%), Positives = 56/163 (34%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G+ G PGE G +G+ G GPPG G G +G
Sbjct: 1085 GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGV--------- 1135
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G +GE +G +GE G PG GP G G G +G +G PG
Sbjct: 1136 GEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1195
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G GD +DG GQPG GP+G
Sbjct: 1196 GFPGD---PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG 1235
Score = 58.5 bits (140), Expect = 1e-08
Identities = 46/163 (28%), Positives = 53/163 (32%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G PGE G G+ G DG PG G GH+GER
Sbjct: 470 GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD--------------- 514
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G RGE +G+ GE G G GPRG PG G G+ G+ G
Sbjct: 515 GMRGEDGEIGP---------------RGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPP 559
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 496
G G+ G G PG GP G
Sbjct: 560 GPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 602
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/171 (27%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Frame = +2
Query: 5 PGVNGAPGEAGRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 175
PG G+ G G G PG GPPG G G KGER
Sbjct: 1126 PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1185
Query: 176 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGL 346
GN G G +GE G+PG GP G G G G
Sbjct: 1186 DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK 1245
Query: 347 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 499
+G PG AG G Q G G+PG G GI
Sbjct: 1246 RGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1296
Score = 54.3 bits (129), Expect = 3e-07
Identities = 43/167 (25%), Positives = 52/167 (31%), Gaps = 3/167 (1%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G GE G G PG+ GPPG G G G +
Sbjct: 1157 GPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVG 1216
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLA 367
G++GE G RG G G +G +G G KG G +G PG
Sbjct: 1217 GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1276
Query: 368 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQ---PGAVGPAGI 499
G G Q G GQ PG +GP G+
Sbjct: 1277 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1323
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/171 (25%), Positives = 54/171 (31%), Gaps = 6/171 (3%)
Frame = +2
Query: 8 GVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKH 187
G G G+ G G G DGPPG G+ G +G + +
Sbjct: 776 GARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR 835
Query: 188 GNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP 358
G G G GE+G PG GP +GLPG G G +G P
Sbjct: 836 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 895
Query: 359 ---GLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 502
G++G G +G G PG VG G R
Sbjct: 896 GPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGER 946
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,743,270
Number of extensions: 881248
Number of successful extensions: 19217
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 8825
Number of HSP's successfully gapped: 436
Length of query: 453
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,802,980
Effective search space: 5136634060
Effective search space used: 5136634060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012837
(1359 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 517 e-144
gb|JH118748.1| Sus scrofa unplaced genomic scaffold ChrUScaf2229 470 e-129
gb|GL893359.2| Sus scrofa unplaced genomic scaffold ChrUScaf1244 76 6e-11
gb|GL896296.2| Sus scrofa unplaced genomic scaffold ChrUScaf4180 60 3e-06
>Sscrofa_Chr09
|| Length = 153670197
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 530 ggtcctcctggtcctcctggccctcctggaccacctggcccaagtggtggtggttatgat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389659 ggtcctcctggtcctcctggccctcctggaccacctggcccaagtggtggtggttatgat 81389718
Query: 590 tttggatatgaaggagacttctacagggctgaccagcctcgctcaccaccttctctcaga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389719 tttggatatgaaggagacttctacagggctgaccagcctcgctcaccaccttctctcaga 81389778
Query: 650 cccaaggattatgaagttgatgctactctgaaatctctcaacaaccagattgagactcta 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389779 cccaaggattatgaagttgatgctactctgaaatctctcaacaaccagattgagactcta 81389838
Query: 710 cttactccagaaggctctaggaagaacccagctcgcacatgccgtgacttgagactcagc 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389839 cttactccagaaggctctaggaagaacccagctcgcacatgccgtgacttgagactcagc 81389898
Query: 770 cacccagaatggagtagtggt 790
|||||||||||||||||||||
Sbjct: 81389899 cacccagaatggagtagtggt 81389919
Score = 470 bits (237), Expect = e-129
Identities = 243/245 (99%)
Strand = Plus / Plus
Query: 972 agtttgaatataatatggaaggagttaccaccaaggaaatggctacccaacttgccttca 1031
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 81391108 agtttgaatataatatggaaggagttaccaccaaggaaatggctacacaacttgccttca 81391167
Query: 1032 tgcgcctgctggccaaccatgcctcccaaaacatcacctaccattgcaagaacagcattg 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81391168 tgcgcctgctggccaaccatgcctcccaaaacatcacctaccattgcaagaacagcattg 81391227
Query: 1092 catacatggatgaagagactggcaacctgaaaaaggctgtcattctgcaaggatccaatg 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81391228 catacatggatgaagagactggcaacctgaaaaaggctgtcattctgcaaggatccaatg 81391287
Query: 1152 atgttgaacttgttgccgaaggcaacagcagattcacctacactgttcttgtagatggct 1211
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81391288 atgttgaacttgttgccgagggcaacagcagattcacctacactgttcttgtagatggct 81391347
Query: 1212 gttct 1216
|||||
Sbjct: 81391348 gttct 81391352
Score = 345 bits (174), Expect = 4e-92
Identities = 183/186 (98%)
Strand = Plus / Plus
Query: 788 ggttactactggattgaccctaaccaaggatgtactatggatgctataaaagtatactgt 847
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 81390329 ggttactactggattgaccctaaccaaggatgtactatggatgctatcaaagtatactgt 81390388
Query: 848 gatttctctactggtgaaacctgcatccgggctcaacctgaaaacatcccagccaaaaac 907
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 81390389 gatttctctactggtgaaacctgcattcgagctcaacctgaaaacatcccagccaaaaac 81390448
Query: 908 tggtacagaaactccaaggtcaagaagcacgtctggttaggagaaactatcaatggtggt 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81390449 tggtacagaaactccaaggtcaagaagcacgtctggttaggagaaactatcaatggtggt 81390508
Query: 968 acccag 973
||||||
Sbjct: 81390509 acccag 81390514
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 96 agggcgagcgtggttaccctggtaatcctggtcctgctggtgctgcaggagcacctggtc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387785 agggcgagcgtggttaccctggtaatcctggtcctgctggtgctgcaggagcacctggtc 81387844
Query: 156 ctcaaggtgctgtgggtcccgctggcaaacatggaaaccgtggtgaacctg 206
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387845 ctcaaggtgctgtgggtcccgctggcaaacatggaaaccgtggtgaacctg 81387895
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 421 gggtccagctggtccttctggccctgctggcaaagatggtcgcactggacaacctggtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389219 gggtccagctggtccttctggccctgctggcaaagatggtcgcactggacaacctggtgc 81389278
Query: 481 agttggacctgctggcattcgtggctctcaaggaagccaaggtcctgctg 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389279 agttggacctgctggcattcgtggctctcaaggaagccaaggtcctgctg 81389328
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 260 ggcccacaaggtattcgaggtgagaagggagagcctggtgataaggggcccagaggtctt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81388462 ggcccacaaggtattcgaggtgagaagggagagcctggtgataaggggcccagaggtctt 81388521
Query: 320 cctggcttgaagggacacaacggattgcaaggtcttcctggtcttgctg 368
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81388522 cctggcttgaagggacacaacggattgcaaggtcttcctggtcttgctg 81388570
Score = 145 bits (73), Expect = 7e-32
Identities = 103/108 (95%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1255 aaacaaata-gccatctcgcctgcctatccttgatattgcacctttggacatcggtga-g 1312
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 81392166 aaacaaataagccatctcgcctgcctatccttgatattgcacctttggacatcggtgatg 81392225
Query: 1313 ctgacc-agaagtccantgtggacgttggcccagtctgtttcaaataa 1359
|||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct: 81392226 ctgaccaagaagt-cagtgtggacgttggcccagtctgtttcaaataa 81392272
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 44 ggcaaccctggaagcgatggtcccccaggccgagatggtcaagctggacacaagg 98
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387644 ggcaaccctggaagcgatggtcccccaggccgagatggtcaagctggacacaagg 81387698
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 206 ggtcctgctggttctgttggtcctgctggtgctgttggtccaagaggtcctagtg 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81388031 ggtcctgctggttctgttggtcctgctggtgctgttggtccaagaggtcctagtg 81388085
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 368 ggtcatcatggtgatcaaggtgctcctggccctgtgggtcctgctggtcctaggg 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389044 ggtcatcatggtgatcaaggtgctcctggccctgtgggtcctgctggtcctaggg 81389098
Score = 79.8 bits (40), Expect = 4e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 1 taatcctggtgtcaatggtgctcctggtgaagccggtcgtgatg 44
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 81387217 taatcctggtgtcaatggtgctcctggtgaagctggtcgtgatg 81387260
>gb|JH118748.1| Sus scrofa unplaced genomic scaffold ChrUScaf2229
Length = 288688
Score = 470 bits (237), Expect = e-129
Identities = 243/245 (99%)
Strand = Plus / Minus
Query: 972 agtttgaatataatatggaaggagttaccaccaaggaaatggctacccaacttgccttca 1031
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 30187 agtttgaatataatatggaaggagttaccaccaaggaaatggctacacaacttgccttca 30128
Query: 1032 tgcgcctgctggccaaccatgcctcccaaaacatcacctaccattgcaagaacagcattg 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30127 tgcgcctgctggccaaccatgcctcccaaaacatcacctaccattgcaagaacagcattg 30068
Query: 1092 catacatggatgaagagactggcaacctgaaaaaggctgtcattctgcaaggatccaatg 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30067 catacatggatgaagagactggcaacctgaaaaaggctgtcattctgcaaggatccaatg 30008
Query: 1152 atgttgaacttgttgccgaaggcaacagcagattcacctacactgttcttgtagatggct 1211
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 30007 atgttgaacttgttgccgagggcaacagcagattcacctacactgttcttgtagatggct 29948
Query: 1212 gttct 1216
|||||
Sbjct: 29947 gttct 29943
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 879 ctcaacctgaaaacatcccagccaaaaactggtacagaaactccaaggtcaagaagcacg 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30875 ctcaacctgaaaacatcccagccaaaaactggtacagaaactccaaggtcaagaagcacg 30816
Query: 939 tctggttaggagaaactatcaatggtggtacccag 973
|||||||||||||||||||||||||||||||||||
Sbjct: 30815 tctggttaggagaaactatcaatggtggtacccag 30781
Score = 145 bits (73), Expect = 7e-32
Identities = 103/108 (95%), Gaps = 4/108 (3%)
Strand = Plus / Minus
Query: 1255 aaacaaata-gccatctcgcctgcctatccttgatattgcacctttggacatcggtga-g 1312
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 29129 aaacaaataagccatctcgcctgcctatccttgatattgcacctttggacatcggtgatg 29070
Query: 1313 ctgacc-agaagtccantgtggacgttggcccagtctgtttcaaataa 1359
|||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct: 29069 ctgaccaagaagt-cagtgtggacgttggcccagtctgtttcaaataa 29023
>gb|GL893359.2| Sus scrofa unplaced genomic scaffold ChrUScaf1244
Length = 54070
Score = 75.8 bits (38), Expect = 6e-11
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 1026 ccttcatgcgcctgctggccaaccatgcctcccaaaacatcacctaccattgcaagaaca 1085
||||| ||||||||||| ||| | | | |||||| |||||||||||||| ||||||||||
Sbjct: 4242 ccttcctgcgcctgctgtccaccgagggctcccagaacatcacctaccactgcaagaaca 4183
Query: 1086 gcattgcatacatggatgaagagactggcaacct 1119
||||||| ||| |||| |||| ||||||||||
Sbjct: 4182 gcattgcctacctggacgaagctgctggcaacct 4149
>gb|GL896296.2| Sus scrofa unplaced genomic scaffold ChrUScaf4180
Length = 31381
Score = 60.0 bits (30), Expect = 3e-06
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1055 tcccaaaacatcacctaccattgcaagaacagcattgcatacatggatgaagagactggc 1114
||||| |||||||||||||| |||||||||||| | || |||||||| | ||||||||
Sbjct: 4520 tcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagactggc 4461
Query: 1115 aacctgaaaaaggc 1128
||||| || |||||
Sbjct: 4460 aacctcaagaaggc 4447
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,780,927
Number of extensions: 356
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 16
Length of query: 1359
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1338
Effective length of database: 2,808,413,156
Effective search space: 3757656802728
Effective search space used: 3757656802728
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)