BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012839
(1343 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus]. 447 e-125
Alignment gi|NP_001001135.2| collagen alpha-1(II) chain isoform 1 [Bos ta... 256 4e-75
Alignment gi|NP_001106695.1| collagen alpha-1(II) chain isoform 2 [Bos ta... 256 4e-75
Alignment gi|NP_001029211.1| collagen alpha-1(I) chain precursor [Bos tau... 243 2e-68
Alignment gi|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus]. 201 9e-52
Alignment gi|NP_001159981.1| collagen alpha-1(XI) chain [Bos taurus]. 139 4e-33
Alignment gi|NP_001039664.1| collagen alpha-2(XI) chain precursor [Bos ta... 129 5e-30
Alignment gi|NP_001192553.1| collagen alpha-3(V) chain [Bos taurus]. 123 4e-28
Alignment gi|XP_002691766.1| PREDICTED: collagen alpha-1(V) chain-like [B... 123 4e-28
Alignment gi|XP_002688885.1| PREDICTED: collagen, type V, alpha 3 [Bos ta... 123 4e-28
>ref|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus].
Length = 1364
Score = 447 bits (1149), Expect = e-125
Identities = 233/406 (57%), Positives = 242/406 (59%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRGPRGDQGPVGR+GETGASGPPGF GEK APGFLGLPG
Sbjct: 816 LRGPRGDQGPVGRSGETGASGPPGFVGEKGPSGEPGTAGPPGTPGPQGLLGAPGFLGLPG 875
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
SRGERGLPGVAGSV RDGNPG+DGPPG
Sbjct: 876 SRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPG 935
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDGQ GHKGER KHGNRGE
Sbjct: 936 RDGQPGHKGERGYPGNAGPVGAAGAPGPQGPVGPVGKHGNRGEPGPAGAVGPAGAVGPRG 995
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QGIRG+KGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQ
Sbjct: 996 PSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAG 1055
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFY 900
KDGR GQPGAVGPAGIR Y+FG++GDFY
Sbjct: 1056 PSGPAGKDGRIGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYEFGFDGDFY 1115
Query: 901 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1080
RADQPRSP SLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY
Sbjct: 1116 RADQPRSPTSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1175
Query: 1081 YWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAKTGTETPKSR 1218
YWIDPNQGCTMDAIKVYCDFSTGETCIRA P +IP K K++
Sbjct: 1176 YWIDPNQGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAK 1221
Score = 75.9 bits (185), Expect = 8e-14
Identities = 69/259 (26%), Positives = 83/259 (32%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G+ GPVG G G +GP G G PG GLPG++
Sbjct: 260 GPKGELGPVGNPGPAGPAGPRGEVG------------LPGLSGPVGPPGNPGANGLPGAK 307
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G GLPGVAG+ G PG G PG
Sbjct: 308 GAAGLPGVAGA------------------------------------PGLPGPRGIPGPV 331
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G R G++GE
Sbjct: 332 GAAGATGARGLVGEPGPA------------------GSKGESGNKGEPGAVGQPGPPGPS 373
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG GE G GP G PGL+G+ G +GLPG G G
Sbjct: 374 GEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGRAG---VMGPAGSRGATGPAGVR 430
Query: 727 XXXXKDGRTGQPGAVGPAG 783
GR G+PG +GP G
Sbjct: 431 GPNGDSGRPGEPGLMGPRG 449
Score = 65.1 bits (157), Expect = 1e-10
Identities = 67/271 (24%), Positives = 79/271 (29%), Gaps = 12/271 (4%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G +G G G SG PG AGEK PG G+ G +
Sbjct: 482 GARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGLQGVQGGK 541
Query: 187 GERG---------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP 339
GE+G LPG AG+ G P
Sbjct: 542 GEQGPAGPPGFQGLPGPAGTAGEA---------------------------------GKP 568
Query: 340 GSDGPPGR---DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G G PG G AG +GER GN+GE
Sbjct: 569 GERGIPGEFGLPGPAGARGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEP------ 622
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
G G PG GP G GL G G G+PG G G+
Sbjct: 623 ------------------GVVGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGE------- 657
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+DG G PGA+G G
Sbjct: 658 -----TGLRGDIGSPGRDGARGAPGAIGAPG 683
Score = 63.2 bits (152), Expect = 5e-10
Identities = 68/276 (24%), Positives = 74/276 (26%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G G G G GPPG GE PG G PG
Sbjct: 93 LMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPG 152
Query: 181 SR------GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG 342
R G RG PG G G G
Sbjct: 153 ERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTG 212
Query: 343 SDGPP---GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXX 513
+ G P GR G G G R G +GE
Sbjct: 213 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPG 272
Query: 514 XXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL------QGLPGLAGHHGDQX 675
G+ G G PG+ G GLPG KG GL GLPG G G
Sbjct: 273 PAGPAGPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVG 332
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ G G+PGAVG G
Sbjct: 333 AAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPG 368
Score = 62.0 bits (149), Expect = 1e-09
Identities = 66/268 (24%), Positives = 76/268 (28%), Gaps = 6/268 (2%)
Frame = +1
Query: 4 RGPRGDQ---GPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
RGPRG++ GP GR G+ G GPPG G PG +GL
Sbjct: 38 RGPRGERGPPGPPGRDGDDGIPGPPGPPG----PPGPPGLGGNFAAQFDAKGGGPGPMGL 93
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G RG PG +G+ DG+PG G
Sbjct: 94 MGPRGP---PGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGR 150
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G G +G R G +G
Sbjct: 151 PGERGVVGPQGARGFPGTPGLP------------------GFKGIRGHNGLDGLKGQPGA 192
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G GE G PG G RGLPG +G G G G G G
Sbjct: 193 PGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGP 252
Query: 715 XXXXXXXXKDGR---TGQPGAVGPAGIR 789
G G PG GPAG R
Sbjct: 253 PGFPGAPGPKGELGPVGNPGPAGPAGPR 280
Score = 60.8 bits (146), Expect = 3e-09
Identities = 67/269 (24%), Positives = 80/269 (29%), Gaps = 9/269 (3%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG- 180
+GP G QG G GE G +GPPGF G PG GLPG
Sbjct: 529 QGPPGLQGVQGGKGEQGPAGPPGFQG------LPGPAGTAGEAGKPGERGIPGEFGLPGP 582
Query: 181 --SRGERGLPGVAGS------VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
+RGERG PG +G+ + G
Sbjct: 583 AGARGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGPSGPSGLPGE 642
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G+ G PG G+ G G R +G+RGE
Sbjct: 643 RGAAGIPGGKGEKGETGLRGDIGSPGRDGARGAPGAIGAPGPAGANGDRGEAGPAGPAGP 702
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G RG GE G+ GP G G G G G PG G G +
Sbjct: 703 A------------GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGP 750
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G TG GA GP+G
Sbjct: 751 V---------------GPTGPVGAAGPSG 764
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/260 (23%), Positives = 74/260 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG GP G+ GE G G PG GE+ G GL G +
Sbjct: 128 GARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLK 187
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G+ G PGV G G PG +G PG+
Sbjct: 188 GQPGAPGVKGE------------------------------------PGAPGENGTPGQT 211
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G GER G+ G
Sbjct: 212 GARGLPGERGRVGAPGPAGA---------------RGSDGSVGPVGPAGPIGSAGPPGFP 256
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G +GE G G+ GP G G +G GL GL G G G+
Sbjct: 257 GAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNP------------------ 298
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G G PGA G AG+
Sbjct: 299 ------GANGLPGAKGAAGL 312
Score = 56.6 bits (135), Expect = 5e-08
Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 1182 PSKNWYRNSKVKKHVWVXETIHGGTHLKYIWKELPQGNGYT-TCFMRLLA 1328
P KNWYRNSK KKHVWV ETI+GGT +Y + + T FMRLLA
Sbjct: 1210 PVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLA 1259
Score = 50.4 bits (119), Expect = 4e-06
Identities = 61/261 (23%), Positives = 68/261 (26%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRG G G G G GA G PG AG +PG G G
Sbjct: 660 LRGDIGSPGRDGARGAPGAIGAPGPAGAN---GDRGEAGPAGPAGPAGPRGSPGERGEVG 716
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G G AG+ +G PG G G
Sbjct: 717 PAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPSGPNGPPGPAGSRG 776
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G G K G RG
Sbjct: 777 DGGPPGATGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRSGETGASG 836
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G GEPG GP G PG +G G G GL G G++
Sbjct: 837 PPGFVGEKGPSGEPGTAGPPGTPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPL- 895
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
G G PGA GP G
Sbjct: 896 --------GIAGPPGARGPPG 908
>ref|NP_001001135.2| collagen alpha-1(II) chain isoform 1 [Bos taurus].
Length = 1487
Score = 256 bits (655), Expect(2) = 4e-75
Identities = 154/408 (37%), Positives = 181/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR G+ G GP G GEK G +GLPG
Sbjct: 929 KGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQ 988
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 1048
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 1049 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPIGKQGDRGEAGAQGPMGPAGPAGARGM 1108
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1109 PGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1168
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG-YEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1169 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQ 1228
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RAD+ +LR D EVDATLKSLNNQIE+L +PEGSRKNPARTCRDL
Sbjct: 1229 REKGPDPLQYMRADEAAG--NLRQHDAEVDATLKSLNNQIESLRSPEGSRKNPARTCRDL 1286
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P ++P K
Sbjct: 1287 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPASVPKK 1334
Score = 44.7 bits (104), Expect(2) = 4e-75
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ETI+GG H Y L P F+RLL+T
Sbjct: 1332 PKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLST 1383
Score = 84.7 bits (208), Expect = 2e-16
Identities = 68/265 (25%), Positives = 81/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG +GE+ G+ GL G++
Sbjct: 240 GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 359
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G G
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAK 419
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG G+Q
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG GPAG
Sbjct: 480 GAPGPAGEEGKRGARGEPGGAGPAG 504
Score = 78.2 bits (191), Expect = 2e-14
Identities = 69/263 (26%), Positives = 82/263 (31%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QGP G G G+ GP G AG PG G+PG+
Sbjct: 383 RGPEGAQGPRGEPGTPGSPGPAGAAGN------------------------PGTDGIPGA 418
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD---GNPGSDGP 354
+G G PG+AG+ G PG GP
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G G AG +G+R GNRG
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGAGPAGPPGERGAP------GNRG---------------- 516
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 517 --FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARG 597
Score = 74.3 bits (181), Expect = 2e-13
Identities = 69/266 (25%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G GE GA GP GF G APG L G R
Sbjct: 642 GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG---LVGPR 698
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG GS G PG+DGP G
Sbjct: 699 GERGFPGERGSPGSQGLQGARGLP------------------------GTPGTDGPKGAA 734
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G +G
Sbjct: 735 GPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP 794
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G GEKGE G GP RG PG +G G G G AG G
Sbjct: 795 GPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 854
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAGI 786
G +G PG GP G+
Sbjct: 855 GQKGDAGAPGPQGPSGAPGPQGPTGV 880
Score = 73.6 bits (179), Expect = 4e-13
Identities = 71/276 (25%), Positives = 83/276 (30%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G GE G GPPG AG PG G PG
Sbjct: 787 LTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPG 846
Query: 181 SRGERG---------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-- 327
++GE+G PG G R
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Query: 328 ----DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
+GNPG GPPG G+ G KG R G +GE
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPP------GEKGEPG 960
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 675
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 961 DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--- 1017
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ GR G PGA GP G
Sbjct: 1018 ------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Score = 67.4 bits (163), Expect = 3e-11
Identities = 63/264 (23%), Positives = 73/264 (27%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 199 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERG PG G+ G+PG +G
Sbjct: 259 KPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 318
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER GN G+
Sbjct: 319 SPGPMGPRGLPGER---------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 363
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE G G +GP G G +G G G PG AG G+
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAG 423
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG G G
Sbjct: 424 APGIAGAPGFPGPRGPPGPQGATG 447
Score = 62.4 bits (150), Expect = 9e-10
Identities = 66/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGF------AGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RG G GP G GE GA G GF AG K PG
Sbjct: 494 RGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
GLPG+RG G PG AG + G G
Sbjct: 554 PGLPGARGLTGRPGDAGP---------QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 604
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
GP G +G+ G GE+ K G G
Sbjct: 605 PGPKGANGEPGKAGEK------------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE 652
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G +G G PG G G PG +G G G PGL G G++
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGS 712
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G GA GPAG
Sbjct: 713 QGLQGARGLPGTPGTDGPKGAAGPAG 738
Score = 60.5 bits (145), Expect = 3e-09
Identities = 61/264 (23%), Positives = 76/264 (28%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG++G G G G+ G G G PG G+PG
Sbjct: 694 LVGPRGERGFPGERGSPGSQGLQGARGLPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPG 753
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
RG G+ G G +DG G GP G
Sbjct: 754 ERGAAGIAGPKGD---------------------RGDVGEKGPEGAPGKDGGRGLTGPIG 792
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G AG GE+ G GE
Sbjct: 793 PPGPAGANGEK------------GEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG 840
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE+GE G KG G PG +G +G QG G+ G G +
Sbjct: 841 ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG 900
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
+G G PG GP+G
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSG 924
>ref|NP_001106695.1| collagen alpha-1(II) chain isoform 2 [Bos taurus].
Length = 1418
Score = 256 bits (655), Expect(2) = 4e-75
Identities = 154/408 (37%), Positives = 181/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR G+ G GP G GEK G +GLPG
Sbjct: 860 KGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQ 919
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 920 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 979
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 980 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPIGKQGDRGEAGAQGPMGPAGPAGARGM 1039
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1040 PGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1099
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG-YEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1100 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQ 1159
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RAD+ +LR D EVDATLKSLNNQIE+L +PEGSRKNPARTCRDL
Sbjct: 1160 REKGPDPLQYMRADEAAG--NLRQHDAEVDATLKSLNNQIESLRSPEGSRKNPARTCRDL 1217
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P ++P K
Sbjct: 1218 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPASVPKK 1265
Score = 44.7 bits (104), Expect(2) = 4e-75
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ETI+GG H Y L P F+RLL+T
Sbjct: 1263 PKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLST 1314
Score = 84.7 bits (208), Expect = 2e-16
Identities = 68/265 (25%), Positives = 81/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG +GE+ G+ GL G++
Sbjct: 171 GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 230
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 290
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G G
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAK 350
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG G+Q
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG GPAG
Sbjct: 411 GAPGPAGEEGKRGARGEPGGAGPAG 435
Score = 78.2 bits (191), Expect = 2e-14
Identities = 69/263 (26%), Positives = 82/263 (31%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QGP G G G+ GP G AG PG G+PG+
Sbjct: 314 RGPEGAQGPRGEPGTPGSPGPAGAAGN------------------------PGTDGIPGA 349
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD---GNPGSDGP 354
+G G PG+AG+ G PG GP
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G G AG +G+R GNRG
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGAGPAGPPGERGAP------GNRG---------------- 447
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 448 --FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 505
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARG 528
Score = 74.3 bits (181), Expect = 2e-13
Identities = 69/266 (25%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G GE GA GP GF G APG L G R
Sbjct: 573 GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG---LVGPR 629
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG GS G PG+DGP G
Sbjct: 630 GERGFPGERGSPGSQGLQGARGLP------------------------GTPGTDGPKGAA 665
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G +G
Sbjct: 666 GPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP 725
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G GEKGE G GP RG PG +G G G G AG G
Sbjct: 726 GPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 785
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAGI 786
G +G PG GP G+
Sbjct: 786 GQKGDAGAPGPQGPSGAPGPQGPTGV 811
Score = 73.6 bits (179), Expect = 4e-13
Identities = 71/276 (25%), Positives = 83/276 (30%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G GE G GPPG AG PG G PG
Sbjct: 718 LTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPG 777
Query: 181 SRGERG---------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-- 327
++GE+G PG G R
Sbjct: 778 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 837
Query: 328 ----DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
+GNPG GPPG G+ G KG R G +GE
Sbjct: 838 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPP------GEKGEPG 891
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 675
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 892 DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--- 948
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ GR G PGA GP G
Sbjct: 949 ------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Score = 67.4 bits (163), Expect = 3e-11
Identities = 63/264 (23%), Positives = 73/264 (27%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 130 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 189
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERG PG G+ G+PG +G
Sbjct: 190 KPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 249
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER GN G+
Sbjct: 250 SPGPMGPRGLPGER---------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 294
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE G G +GP G G +G G G PG AG G+
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAG 354
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG G G
Sbjct: 355 APGIAGAPGFPGPRGPPGPQGATG 378
Score = 62.4 bits (150), Expect = 9e-10
Identities = 66/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGF------AGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RG G GP G GE GA G GF AG K PG
Sbjct: 425 RGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 484
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
GLPG+RG G PG AG + G G
Sbjct: 485 PGLPGARGLTGRPGDAGP---------QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 535
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
GP G +G+ G GE+ K G G
Sbjct: 536 PGPKGANGEPGKAGEK------------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE 583
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G +G G PG G G PG +G G G PGL G G++
Sbjct: 584 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGS 643
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G GA GPAG
Sbjct: 644 QGLQGARGLPGTPGTDGPKGAAGPAG 669
Score = 60.5 bits (145), Expect = 3e-09
Identities = 61/264 (23%), Positives = 76/264 (28%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG++G G G G+ G G G PG G+PG
Sbjct: 625 LVGPRGERGFPGERGSPGSQGLQGARGLPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPG 684
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
RG G+ G G +DG G GP G
Sbjct: 685 ERGAAGIAGPKGD---------------------RGDVGEKGPEGAPGKDGGRGLTGPIG 723
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G AG GE+ G GE
Sbjct: 724 PPGPAGANGEK------------GEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG 771
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE+GE G KG G PG +G +G QG G+ G G +
Sbjct: 772 ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG 831
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
+G G PG GP+G
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSG 855
>ref|NP_001029211.1| collagen alpha-1(I) chain precursor [Bos taurus].
Length = 1463
Score = 243 bits (620), Expect(2) = 2e-68
Identities = 142/397 (35%), Positives = 173/397 (43%), Gaps = 11/397 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GPRG+ GP GR GE G GPPG AGEK G +GLPG
Sbjct: 906 KGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 965
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G PG++G PGR
Sbjct: 966 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1025
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG G KG+R K G+RGE
Sbjct: 1026 DGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVGARGP 1085
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1086 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGS 1145
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGY------ 885
KDG G PG +GP G R YD +
Sbjct: 1146 AGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFLPQPPQ 1205
Query: 886 -----EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G +YRAD +R +D EVD TLKSL+ QIE + +PEGSRKNPARTCRDL+
Sbjct: 1206 EKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLK 1262
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCI 1161
+ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+
Sbjct: 1263 MCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCV 1299
Score = 36.2 bits (82), Expect(2) = 2e-68
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +3
Query: 1152 NLHSSXTLKHPS------KNWY--RNSKVKKHVWVXETIHGGTHLKYIWK-ELPQGNGYT 1304
N+ + T +P+ KNWY +N K K+HVW E++ GG +Y + P
Sbjct: 1291 NMETGETCVYPTQPSVAQKNWYISKNPKEKRHVWYGESMTGGFQFEYGGQGSDPADVAIQ 1350
Query: 1305 TCFMRLLAT 1331
F+RL++T
Sbjct: 1351 LTFLRLMST 1359
Score = 75.1 bits (183), Expect = 1e-13
Identities = 68/259 (26%), Positives = 73/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G+ GA G PG AG K APG G GS
Sbjct: 808 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSA 867
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G G G+ G PG GPPG
Sbjct: 868 GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPP 927
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG KG G RGE
Sbjct: 928 GPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE---RGFPGLPGPSGEPGKQ 984
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GE+G PG GP GL G G +G +G PG G G
Sbjct: 985 GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG---RDGSPGAKGDRGETGPA 1041
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G PG VGPAG
Sbjct: 1042 GPPGAPGAPGAPGPVGPAG 1060
Score = 71.2 bits (173), Expect = 2e-12
Identities = 64/261 (24%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L G +G G G G G +GPPG AG+ G G PG
Sbjct: 533 LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 592
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG+PG G+V G PG GPPG
Sbjct: 593 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 652
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G +G + G GE
Sbjct: 653 EAGKPGEQG------------VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG 700
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G+ G PG G +G PGL+G G +G GL G GD+
Sbjct: 701 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR---------GDAGPKG 751
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
KDG G G +GP G
Sbjct: 752 ADGAPGKDGVRGLTGPIGPPG 772
Score = 68.9 bits (167), Expect = 1e-11
Identities = 66/269 (24%), Positives = 78/269 (28%), Gaps = 6/269 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+GD GP G G G G G G+ PG G PG
Sbjct: 110 VEGPKGDTGPRGPRGPAGPPGRDGIPGQ------------------------PGLPGPPG 145
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G PG+ G+ G G GPPG
Sbjct: 146 PPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG 205
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G G K+G+ GE
Sbjct: 206 EPGEPGASG---------------PMGPRGPPGPPGKNGDDGE----------------- 233
Query: 541 XXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
G GE+G PG +G R GLPG+KGH G GL G G G
Sbjct: 234 -AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG 292
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PGA GPAG R
Sbjct: 293 ENGAPGQMGPRGLPGERGRPGAPGPAGAR 321
Score = 63.5 bits (153), Expect = 4e-10
Identities = 67/263 (25%), Positives = 78/263 (29%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GPRG +GP G GE G GP G AG PG G PG+
Sbjct: 357 QGPRGSEGPQGVRGEPGPPGPAGAAGPAGN---------------------PGADGQPGA 395
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ GN G G PG
Sbjct: 396 KGANGAPGIAGAPGFPGARGPSGPQGPSGPPGPK---------------GNSGEPGAPGS 440
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G KGE K G RGE
Sbjct: 441 KGDTGAKGE---------PGPTGIQGPPGPAGEEGKRGARGEPGPAGLP----------- 480
Query: 544 XXXQGIRGEKGEPGDK---GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G GE+G PG + G G+ G KG G +G PG AG G
Sbjct: 481 ----GPPGERGGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGA 536
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G G+ G GPAG
Sbjct: 537 KGLTGSPGSPGPDGKTGPPGPAG 559
Score = 63.2 bits (152), Expect = 5e-10
Identities = 62/266 (23%), Positives = 73/266 (27%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASG------PPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RGPRG GP GR G G G PPG G PG
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGP 179
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
+G G RG G PG G ++G+ G
Sbjct: 180 MGPSGPRGLPGPPGAPGP------QGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGE 233
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
G PGR G+ G G + G+ G
Sbjct: 234 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 293
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
+G+ GE+G PG GP G G G G G PG G G
Sbjct: 294 NGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 353
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G+PG GPAG
Sbjct: 354 GGPQGPRGSEGPQGVRGEPGPPGPAG 379
Score = 62.8 bits (151), Expect = 7e-10
Identities = 68/274 (24%), Positives = 77/274 (28%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG QGP G G GA+G PG G K APG G+PG R
Sbjct: 682 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG---------APGLQGMPGER 732
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G GLPG G +DG G GP G
Sbjct: 733 GAAGLPGPKGD---------------------RGDAGPKGADGAPGKDGVRGLTGPIGPP 771
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G++ G+RGE
Sbjct: 772 GPAGAPGDKGEAGPSGPAGPTGARGAP---------GDRGEPGPPGPAGFAGPPGADGQP 822
Query: 547 XXQGIRGEKGEPGDKGPR---------------GLPGLKGHNGLQGLPGLAGHHGDQXXX 681
+G G+ G GD GP G PG KG G G PG G G
Sbjct: 823 GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRV 882
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K+G G G GPAG
Sbjct: 883 GPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAG 916
>ref|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus].
Length = 1466
Score = 201 bits (512), Expect = 9e-52
Identities = 137/413 (33%), Positives = 161/413 (38%), Gaps = 16/413 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+GD GP G G G GPPG G A G G PG
Sbjct: 919 ISGPKGDSGPPGERGAPGPQGPPGAPGP---------------LGIAGLTGARGLAGPPG 963
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G RG PG G RDGNPGSDG PG
Sbjct: 964 MPGARGSPGPQGIKGENGKPGPSGQNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPG 1023
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDG G KG+R K G+RGE
Sbjct: 1024 RDGAPGAKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRG 1083
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1084 PPGPQGPRGDKGETGERGAMGIKGHRGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRGPVG 1143
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXX---------- 870
KDG +G PG +GP G R
Sbjct: 1144 PSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGAGGVA 1203
Query: 871 --YDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPAR 1032
G E G F Y D+P + E+ +LKS+N QIE+L++P+GSRKNPAR
Sbjct: 1204 AIAGVGAEKAGGFAPYYGDEPID---FKINTDEIMTSLKSVNGQIESLISPDGSRKNPAR 1260
Query: 1033 TCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
CRDL+ HPE SG YW+DPNQGC +DAIKVYC+ TGETCI A P IP K
Sbjct: 1261 NCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVYCNMETGETCISASPLTIPQK 1313
Score = 72.4 bits (176), Expect = 9e-13
Identities = 67/274 (24%), Positives = 77/274 (28%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS- 183
G G QGP G+ GETG GPPG G PG G PG
Sbjct: 600 GGPGPQGPAGKNGETGPQGPPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEP 659
Query: 184 --RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
+GE G PG+ G G PG+ GPP
Sbjct: 660 GPKGEAGAPGIPGG---------------------------KGDSGAPGERGPPGAGGPP 692
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSSGVD 752
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG +G G+PG+AG G
Sbjct: 753 GAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGVPGIAGPRGGPGERGEQGPPGPAGFP 812
Query: 718 XXXXXXXKDGRTGQ------------PGAVGPAG 783
+ G G+ PGA GPAG
Sbjct: 813 GAPGQNGEPGAKGERGAPGEKGEGGPPGAAGPAG 846
Score = 71.6 bits (174), Expect = 1e-12
Identities = 66/273 (24%), Positives = 73/273 (26%), Gaps = 12/273 (4%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 423 GVPGQRGAAGEPGKNGAKGDPGPRGERGEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAA 482
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------RD 330
GERG+PG G
Sbjct: 483 GERGVPGFRGPAGANGLPGEKGPPGDRGGPGPAGPRGVAGEPGRDGLPGGPGLRGIPGSP 542
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G PGSDG PG G G G G GE
Sbjct: 543 GGPGSDGKPGPPGSQGETGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 602
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
QG G G GDKG G PG +G GL G G G +G
Sbjct: 603 GPQGPAGKNGETGPQGPPGPTGPSGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGPK 662
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G PGA GP G R
Sbjct: 663 GEAGAPGIPGGKGDSGAPGERGPPGAGGPPGPR 695
Score = 71.2 bits (173), Expect = 2e-12
Identities = 63/261 (24%), Positives = 75/261 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+G+ G G GE GA+G PG AGE+ PG G PG
Sbjct: 457 IAGPKGEDGKDGSPGEPGANGLPGAAGER---GVPGFRGPAGANGLPGEKGPPGDRGGPG 513
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G RG+ G G R G PGS GP G
Sbjct: 514 PAGPRGVAGEPGRDGLPGGPGLRGIPGSPGGPGSDGKPGPPGSQGETGRPGPPGSPGPRG 573
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G G + K+G G
Sbjct: 574 QPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQGPPGPTGPSGDKGDTG 633
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QG++G G G G G PG G G G PG+ G GD
Sbjct: 634 PPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAGGPPG 693
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
G G GA GP G
Sbjct: 694 PRGGAGPPGPEGGKGAAGPPG 714
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/268 (24%), Positives = 76/268 (28%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 731
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G G+ G PG
Sbjct: 732 GGPGGPGPKGDKGEPGSSGVDGAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGVPGIA 791
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG---NRGEXXXXXXXXXXXXXXXX 537
G G GER + G +GE
Sbjct: 792 GPRGGPGERGEQGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGAAGPAGGSGPA 851
Query: 538 XXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXX 699
QG++GE+G PG G RG PG G NG G PG +G G
Sbjct: 852 GPPGPQGVKGERGSPGGPGAAGFPGGRGPPGPPGSNGNPGPPGSSGAPGKDG
Animal-Genome cDNA 20110601C-012839
Animal-Genome cDNA 20110601C-012839
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012839
(1343 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis l... 454 e-138
Alignment gi|NP_001006952.1| collagen alpha-1(II) chain [Canis lupus fami... 256 4e-75
Alignment gi|NP_001003090.1| collagen alpha-1(I) chain precursor [Canis l... 243 1e-67
Alignment gi|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) cha... 192 1e-53
Alignment gi|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) cha... 191 3e-53
Alignment gi|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) cha... 191 3e-53
Alignment gi|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) cha... 191 3e-53
Alignment gi|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) cha... 191 3e-53
Alignment gi|XP_535998.2| PREDICTED: similar to Collagen alpha 2(V) chain... 204 2e-52
Alignment gi|XP_862974.1| PREDICTED: similar to procollagen, type III, al... 191 1e-51
>ref|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis lupus familiaris].
Length = 1366
Score = 454 bits (1167), Expect(2) = e-138
Identities = 237/397 (59%), Positives = 240/397 (60%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRGPRGDQGPVGRTGETGASGPPGF GEK APG LGLPG
Sbjct: 818 LRGPRGDQGPVGRTGETGASGPPGFTGEKGPSGEPGTAGPPGTPGPQGLLGAPGILGLPG 877
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
SRGERGLPGVAGSV RDGNPG+DGPPG
Sbjct: 878 SRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGAPGVNGAPGEAGRDGNPGNDGPPG 937
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDGQAGHKGER KHGNRGE
Sbjct: 938 RDGQAGHKGERGYPGNIGPVGAVGAPGPHGPVGPTGKHGNRGEPGPAGSVGPVGAVGPRG 997
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QGIRG+KGEPG+KGPRGLPGLKGHNGLQGLPGLAG HGDQ
Sbjct: 998 PSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGLAGQHGDQGAPGSVGPAGPRGPAG 1057
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFY 900
KDGRTGQPG VGPAGIR YDFGYEGDFY
Sbjct: 1058 PSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFY 1117
Query: 901 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1080
RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY
Sbjct: 1118 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1177
Query: 1081 YWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
YWIDPNQGCTMDAIKVYCDFSTGETCIRA P NIPAK
Sbjct: 1178 YWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAK 1214
Score = 57.8 bits (138), Expect(2) = e-138
Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 1182 PSKNWYRNSKVKKHVWVXETIHGGTHLKYIWKELPQGNGYT-TCFMRLLA 1328
P+KNWYRNSKVKKH+W+ ETI+GGT +Y + + T FMRLLA
Sbjct: 1212 PAKNWYRNSKVKKHIWLGETINGGTQFEYNVEGVTTKEMATQLAFMRLLA 1261
Score = 75.5 bits (184), Expect = 1e-13
Identities = 71/260 (27%), Positives = 81/260 (31%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G GPVG G G++GPPGF G PG G G
Sbjct: 234 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGN------------PGPAGPAGP 281
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGE GLPGV+G V G PG G PG
Sbjct: 282 RGEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAP---------GLPGPRGIPGP 332
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G AG G R G++GE
Sbjct: 333 VGAAGATGARGIVGEPGPA------------------GSKGESGNKGEPGSAGAQGPPGP 374
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+G RG GE G GP G PGL+G G +GLPG G G
Sbjct: 375 SGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAG---VMGPPGPRGATGPAGV 431
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
GR G+PG +GP G
Sbjct: 432 RGPNGDSGRPGEPGLMGPRG 451
Score = 62.8 bits (151), Expect = 7e-10
Identities = 66/277 (23%), Positives = 76/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---------AGEKXXXXXXXXXXXXXXXXXXXXXXAP 159
G RG G GR GE G GP GF AG++ P
Sbjct: 430 GVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGKEGPMGLPGIDGRPGPIGPAGARGEP 489
Query: 160 GFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP 339
G +G PG +G G PG G DGN
Sbjct: 490 GNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP---------------------DGNN 528
Query: 340 GSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXX 519
G+ GPPG G G KGE+ + G GE
Sbjct: 529 GAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGLPGEFGLPGPAGPR 588
Query: 520 XXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP---------GLAGHHGDQ 672
G G G G GP G G KG G+ G P GL G G
Sbjct: 589 GERGPPGESGAAGPSGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGASGPGGLPGERGAA 648
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+DG G PGA+G G
Sbjct: 649 GIPGGKGEKGETGLRGEIGNPGRDGARGAPGAMGAPG 685
Score = 60.8 bits (146), Expect = 3e-09
Identities = 66/262 (25%), Positives = 74/262 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG RG GP GR G+ G GPPG G PG +GL G
Sbjct: 41 RGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGL--GPGPMGLMGP 98
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RG G G G G G GPPG+
Sbjct: 99 RGPPGASGAPGPQGFQGPAGEPGEPGQTGPA------------------GARGPPGPPGK 140
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ GH G K G GE
Sbjct: 141 AGEDGHPG---------------------------KPGRPGERGVVGPQGARGFPGTPGL 173
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+GIRG G G KG G PG+KG G G G G G +
Sbjct: 174 PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGL--------------- 218
Query: 724 XXXXXKDGRTGQPGAVGPAGIR 789
G G+ GA GPAG R
Sbjct: 219 ------PGERGRVGAPGPAGAR 234
Score = 59.7 bits (143), Expect = 6e-09
Identities = 64/259 (24%), Positives = 73/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG++GP G +G G SGP G G A G GLPG R
Sbjct: 586 GPRGERGPPGESGAAGPSGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGASGPGGLPGER 645
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G+PG G GNPG DG G
Sbjct: 646 GAAGIPGGKGEKGETGLRGEI---------------------------GNPGRDGARGAP 678
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G+RGE
Sbjct: 679 GAMGAPGPAGAT------------------------GDRGEAGPAGPAGPA--------- 705
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RG GE G+ GP G G G G G PG G G +
Sbjct: 706 ---GPRGTPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPV--------- 753
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G TG G+ GP+G
Sbjct: 754 ------GPTGPIGSAGPSG 766
Score = 53.1 bits (126), Expect = 6e-07
Identities = 61/262 (23%), Positives = 68/262 (25%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRG G+ G G G GA G PG AG PG G G
Sbjct: 662 LRGEIGNPGRDGARGAPGAMGAPGPAG---ATGDRGEAGPAGPAGPAGPRGTPGERGEVG 718
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G G AG+ +G PG G G
Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPIGSAGPSGPNGPPGPAGSRG 778
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G G K G RG
Sbjct: 779 DGGPPGATGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRTGETGASG 838
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G GEPG GP PG G GL G PG+ G G +
Sbjct: 839 PPGFTGEKGPSGEPGTAGP---PGTPGPQGLLGAPGILGLPGSRGERGLPGVAGSVGEPG 895
Query: 721 XXXXXXKDGRTGQPGAVGPAGI 786
G G PGAVG G+
Sbjct: 896 PLGIAGPPGARGPPGAVGAPGV 917
>ref|NP_001006952.1| collagen alpha-1(II) chain [Canis lupus familiaris].
Length = 1487
Score = 256 bits (655), Expect(2) = 4e-75
Identities = 154/408 (37%), Positives = 180/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR G+ G GP G GEK G +GLPG
Sbjct: 929 KGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQ 988
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPSGEPGREGSPGADGPPGR 1048
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 1049 DGAAGVKGDRGETGPVGAPGAPGSPGSPGPAGPTGKQGDRGEAGAQGPMGPAGPAGARGI 1108
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1109 PGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1168
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG-YEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1169 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQ 1228
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RADQ LR D EVDATLKSLNNQIE++ +PEGSRKNPARTCRDL
Sbjct: 1229 REKGPDPLQYMRADQAAG--DLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDL 1286
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P ++P K
Sbjct: 1287 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPASVPKK 1334
Score = 44.7 bits (104), Expect(2) = 4e-75
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ETI+GG H Y L P F+RLL+T
Sbjct: 1332 PKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLST 1383
Score = 83.2 bits (204), Expect = 5e-16
Identities = 67/265 (25%), Positives = 80/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG +GE+ G+ GL G++
Sbjct: 240 GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 359
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G G
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG G+Q
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG GP G
Sbjct: 480 GAPGPAGEEGKRGARGEPGGAGPVG 504
Score = 77.0 bits (188), Expect = 4e-14
Identities = 68/263 (25%), Positives = 82/263 (31%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QGP G G G+ GP G +G PG G+PG+
Sbjct: 383 RGPEGAQGPRGEPGTPGSPGPAGASGN------------------------PGTDGIPGA 418
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD---GNPGSDGP 354
+G G PG+AG+ G PG GP
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G G AG +G+R GNRG
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGAGPVGPPGERGAP------GNRG---------------- 516
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 517 --FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARG 597
Score = 75.5 bits (184), Expect = 1e-13
Identities = 67/261 (25%), Positives = 81/261 (31%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G GPPG G + PG +G PG +
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQ---------------------PGVMGFPGPK 608
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG +DG G+ GPPG
Sbjct: 609 GANGEPGKAGE---------------------KGLPGAPGLRGLPGKDGETGAAGPPGPA 647
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +GE+ G GE
Sbjct: 648 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV------------ 695
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RGE+G PG++G G GL+G GL G PG G G
Sbjct: 696 ---GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG-------------------- 732
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
G G PGA GP G++
Sbjct: 733 ----ASGPAGPPGAQGPPGLQ 749
Score = 73.6 bits (179), Expect = 4e-13
Identities = 71/276 (25%), Positives = 83/276 (30%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G GE G GPPG AG PG G PG
Sbjct: 787 LTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPG 846
Query: 181 SRGERG---------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-- 327
++GE+G PG G R
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Query: 328 ----DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
+GNPG GPPG G+ G KG R G +GE
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPP------GEKGEPG 960
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 675
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 961 DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--- 1017
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ GR G PGA GP G
Sbjct: 1018 ------PPGPVGPPGLTGPSGEPGREGSPGADGPPG 1047
Score = 67.8 bits (164), Expect = 2e-11
Identities = 63/264 (23%), Positives = 73/264 (27%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 199 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERG PG G+ G+PG +G
Sbjct: 259 KPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 318
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER GN G+
Sbjct: 319 SPGPMGPRGLPGER---------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 363
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE G G +GP G G +G G G PG AG G+
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 423
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG G G
Sbjct: 424 APGIAGAPGFPGPRGPPGPQGATG 447
Score = 65.9 bits (159), Expect = 9e-11
Identities = 69/273 (25%), Positives = 77/273 (28%), Gaps = 12/273 (4%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+GPRG G G G GASGP G G A G GL G
Sbjct: 715 LQGPRGLPGTPGTDGPKGASGPAGPPG------------------------AQGPPGLQG 750
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG G+AG +G G GPPG
Sbjct: 751 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPG 810
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G AG +G G +GE
Sbjct: 811 PAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE------------AGQKG 858
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G G PG +GP G+ G KG G QG PG G G
Sbjct: 859 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 918
Query: 721 XXXXXXKD------------GRTGQPGAVGPAG 783
KD GR G PG GPAG
Sbjct: 919 PPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAG 951
Score = 63.2 bits (152), Expect = 6e-10
Identities = 67/266 (25%), Positives = 76/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGF------AGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RG G GPVG GE GA G GF AG K PG
Sbjct: 494 RGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
GLPG+RG G PG AG + G G
Sbjct: 554 PGLPGARGLTGRPGDAGP---------QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 604
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
GP G +G+ G GE+ K G G
Sbjct: 605 PGPKGANGEPGKAGEK------------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE 652
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G +G G PG G G PG +G G G PGL G G++
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGA 712
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G GA GPAG
Sbjct: 713 QGLQGPRGLPGTPGTDGPKGASGPAG 738
Score = 62.8 bits (151), Expect = 7e-10
Identities = 63/259 (24%), Positives = 70/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G G G GEK PG G PG
Sbjct: 117 GPKGPPGPQGPAGEQGPRGDRGDKGEK------------GAPGPRGRDGEPGTPGNPGPP 164
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G G+ GP G
Sbjct: 165 GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 224
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G GE K G GE
Sbjct: 225 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLP 284
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG G G KG G PG+KG +G G G G G +
Sbjct: 285 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 344
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+ G G PG VGPAG
Sbjct: 345 GNDGQPGPAGPPGPVGPAG 363
>ref|NP_001003090.1| collagen alpha-1(I) chain precursor [Canis lupus familiaris].
Length = 1460
Score = 243 bits (619), Expect(2) = 1e-67
Identities = 141/397 (35%), Positives = 175/397 (44%), Gaps = 11/397 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RG+ GP GR GE G GPPG AGEK G +GLPG
Sbjct: 903 KGARGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 962
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG++G PGR
Sbjct: 963 RGERGFPGLPGPSGEPGKQGPSGTSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGR 1022
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG G KG+R K+G+RGE
Sbjct: 1023 DGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGARGP 1082
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1083 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGS 1142
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGY------ 885
KDG G PG +GP G R +DF +
Sbjct: 1143 AGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQ 1202
Query: 886 -----EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G +YRAD +R +D EVD TLKSL+ QIE + +PEGSRKNPARTCRDL+
Sbjct: 1203 EKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLK 1259
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCI 1161
+ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+
Sbjct: 1260 MCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCV 1296
Score = 33.5 bits (75), Expect(2) = 1e-67
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Frame = +3
Query: 1152 NLHSSXTLKHPS------KNWY--RNSKVKKHVWVXETIHGGTHLKYIWK-ELPQGNGYT 1304
N+ + T +P+ KNWY +N K K+HVW E++ G +Y + P
Sbjct: 1288 NMETGETCVYPTQPQVAQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSDPADVAIQ 1347
Query: 1305 TCFMRLLAT 1331
F+RL++T
Sbjct: 1348 LTFLRLMST 1356
Score = 75.1 bits (183), Expect = 1e-13
Identities = 68/259 (26%), Positives = 73/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G+ GA G PG AG K APG G GS
Sbjct: 805 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSA 864
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G G G+ G PG GPPG
Sbjct: 865 GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGARGETGPAGRPGEVGPPGPP 924
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG KG G RGE
Sbjct: 925 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE---RGFPGLPGPSGEPGKQ 981
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GE+G PG GP GL G G +G +G PG G G
Sbjct: 982 GPSGTSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPG---RDGSPGPKGDRGETGPA 1038
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G PG VGPAG
Sbjct: 1039 GPPGAPGAPGAPGPVGPAG 1057
Score = 71.2 bits (173), Expect = 2e-12
Identities = 64/261 (24%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L G +G G G G G +GPPG AG+ G G PG
Sbjct: 530 LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 589
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG+PG G+V G PG GPPG
Sbjct: 590 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 649
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G +G + G GE
Sbjct: 650 EAGKPGEQG------------VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG 697
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G+ G PG G +G PGL+G G +G GL G GD+
Sbjct: 698 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR---------GDAGPKG 748
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
KDG G G +GP G
Sbjct: 749 ADGSPGKDGVRGLTGPIGPPG 769
Score = 66.2 bits (160), Expect = 7e-11
Identities = 67/269 (24%), Positives = 79/269 (29%), Gaps = 6/269 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+GD GP G G G G G G+ PG G PG
Sbjct: 106 VEGPKGDTGPRGPRGPAGPPGRDGIPGQ------------------------PGLPGPPG 141
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G PG+ G+ G PG+ GP G
Sbjct: 142 PPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPSGPRGLP-----GPPGAPGPQG 196
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE K+G+ GE
Sbjct: 197 FQGPPGEPGE---------PGASGPMGPRGPPGPPGKNGDDGEAGKP------------- 234
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
G GE+G PG +G RGLPG +KGH G GL G G G
Sbjct: 235 -----GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG 289
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PGA GPAG R
Sbjct: 290 ENGAPGQMGPRGLPGERGRPGAPGPAGAR 318
Score = 63.2 bits (152), Expect = 6e-10
Identities = 70/280 (25%), Positives = 79/280 (28%), Gaps = 21/280 (7%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG QGP G G GA+G PG G K APG G+PG R
Sbjct: 679 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG---------APGLQGMPGER 729
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG----- 351
G GLPG G DG+PG DG
Sbjct: 730 GAAGLPGPKGD---------------------------RGDAGPKGADGSPGKDGVRGLT 762
Query: 352 -PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
P G G AG G++ G+RGE
Sbjct: 763 GPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAP---------GDRGEPGPPGPAGFAGPP 813
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPR---------------GLPGLKGHNGLQGLPGLAGHH 663
+G G+ G GD GP G PG KG G G PG G
Sbjct: 814 GADGQPGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGFP 873
Query: 664 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G K+G G G GPAG
Sbjct: 874 GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGARGETGPAG 913
Score = 61.6 bits (148), Expect = 2e-09
Identities = 59/263 (22%), Positives = 74/263 (28%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTG---ETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
RGPRG GP GR G + G GPPG G + G + +
Sbjct: 116 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEK--STGGISV 173
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG G G G+ G ++G+ G G
Sbjct: 174 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGK 233
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PGR G+ G G + G+ G
Sbjct: 234 PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGA 293
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G+ GE+G PG GP G G G G G PG G G
Sbjct: 294 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGP 353
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G G+PG GPAG
Sbjct: 354 QGARGSEGPQGVRGEPGPPGPAG 376
Score = 60.5 bits (145), Expect = 4e-09
Identities = 66/263 (25%), Positives = 77/263 (29%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RG +GP G GE G GP G AG PG G PG+
Sbjct: 354 QGARGSEGPQGVRGEPGPPGPAGAAGPAGN---------------------PGADGQPGA 392
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ GN G G PG
Sbjct: 393 KGANGAPGIAGAPGFPGARGPSGPQGPSGPPGPK---------------GNSGEPGAPGN 437
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G KGE K G RGE
Sbjct: 438 KGDTGAKGE---------PGPTGIQGPPGPAGEEGKRGARGEPGPTGLP----------- 477
Query: 544 XXXQGIRGEKGEPGDK---GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G GE+G PG + G G+ G KG G +G PG AG G
Sbjct: 478 ----GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 533
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G G+ G GPAG
Sbjct: 534 KGLTGSPGSPGPDGKTGPPGPAG 556
>ref|XP_863103.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
10 [Canis familiaris].
Length = 1456
Score = 192 bits (489), Expect(2) = 1e-53
Identities = 128/413 (30%), Positives = 161/413 (38%), Gaps = 18/413 (4%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G +PG G G
Sbjct: 921 GPKGDAGQPGEKGSPGPQGPPGAPGPLGIAGITGARGLAGPPGIPGPRGSPGPQGPSGHN 980
Query: 187 GERG------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSD 348
GERG LPG+AG+ RDGNPGSD
Sbjct: 981 GERGPPGPQGLPGLAGTAGEPG------------------------------RDGNPGSD 1010
Query: 349 GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
G PGRDG G KG+R K G+RGE
Sbjct: 1011 GLPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPA 1070
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1071 GSRGPPGPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPR 1130
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF--- 879
KDG +G PG +GP G R
Sbjct: 1131 GPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGG 1190
Query: 880 ---------GYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPAR 1032
G + + P + E+ +LKS++ QIE+L++P+GSRK+PAR
Sbjct: 1191 GAAALAAAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPAR 1250
Query: 1033 TCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
CRDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P ++P K
Sbjct: 1251 NCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRK 1303
Score = 37.0 bits (84), Expect(2) = 1e-53
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P KNW+ +S KKHVW E++ GG Y ELP+ F+RLL++
Sbjct: 1301 PRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSS 1352
Score = 69.3 bits (168), Expect = 8e-12
Identities = 66/262 (25%), Positives = 74/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---AGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
G G QGP G+ GETG GPPG AG+K G G P
Sbjct: 600 GGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEP 659
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +GE G PGV G G PG+ GP
Sbjct: 660 GPKGESGSPGVPGG---------------------------KGDSGAPGERGPPGAAGPM 692
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGAD 752
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG G GLPG+AG G
Sbjct: 753 GAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 812
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 813 GAPGQNGEPGAKGERGAPGEKG 834
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/277 (24%), Positives = 77/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 731
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G+ G+DG PG+D
Sbjct: 732 GGPGGPGPKGD---------------------------------KGEPGSAGADGAPGKD 758
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G GE
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQN 818
Query: 547 XXQGIRGEKGEPGDK------------------GPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G +GE+G PG+K GP G G+KG G G PG AG G +
Sbjct: 819 GEPGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGR 878
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G PG G G
Sbjct: 879 GLPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGAPG 915
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/271 (23%), Positives = 75/271 (27%), Gaps = 11/271 (4%)
Frame = +1
Query: 4 RGPRGDQGPVG---RTGETGASGPPGFAG--------EKXXXXXXXXXXXXXXXXXXXXX 150
+GP+GD GP G R G+ G G PG G E
Sbjct: 105 QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGV 164
Query: 151 XAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD 330
G G PG G G PG G+
Sbjct: 165 AGGGIGGYPGPAGPPGPPGPPGT------------------------------------S 188
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G+PGS G PG G G G+ + G GE
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPP 248
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 249 GMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGER 308
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 63.5 bits (153), Expect = 4e-10
Identities = 63/260 (24%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGSNGSPGQR 368
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 369 GEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQR 428
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ G RGE
Sbjct: 429 GGAGEPGKNGAKGEPGP------------------RGERGEAGSPGIPGP---------- 460
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G+ G PG+ G GLPG G G G G AG +G
Sbjct: 461 --KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
+ GR G PG G G+
Sbjct: 519 GAPGEPGRDGVPGGPGMRGM 538
Score = 63.2 bits (152), Expect = 6e-10
Identities = 62/259 (23%), Positives = 74/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 423 GAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAA 482
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG G +G PG GP G
Sbjct: 483 GERGAPGFRGPAGA---------------------------------NGLPGEKGPAGER 509
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G R G GE
Sbjct: 510 GGPGPAGPR---------------------------GAPGEPGRDGVPGGPGMRGMPGSP 542
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+ G PG +G G PG G +G +G PG+ G G +
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPK---------------GND 587
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K+G G PG GP G
Sbjct: 588 GAPGKNGERGGPGGPGPQG 606
Score = 62.8 bits (151), Expect = 7e-10
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
+GP G GP G G+ G GP G G PG G
Sbjct: 617 QGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGD 676
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G+ GERG PG AG + +G G+ GP
Sbjct: 677 SGAPGERGPPGAAGPMGPRGGAGPPGP------------------------EGGKGAAGP 712
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G AG G G++GE
Sbjct: 713 PGPPGSAGTPG------------LQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGP 760
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGE 820
Query: 715 XXXXXXXXKDGRTGQ---PGAVGPAG 783
G G+ PG GP G
Sbjct: 821 PGAKGERGAPGEKGEGGPPGVAGPPG 846
Score = 57.8 bits (138), Expect = 2e-08
Identities = 66/272 (24%), Positives = 75/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGE---KXXXXXXXXXXXXXXXXXXXXXXAPGFLG 171
L+G G G G G G G PG G PG G
Sbjct: 283 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PGS G +G G AGS G PG G
Sbjct: 343 FPGSPGAKGEVGPAGS------------------PGSNGSPGQRGEPGPQGHAGAPGPPG 384
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PPG +G G KGE G RG
Sbjct: 385 PPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQRG--------------- 429
Query: 532 XXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
G G KGEPG +G R G+PG KG +G G PG G +G
Sbjct: 430 ---GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
+ G G+ G GPAG R
Sbjct: 487 APGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
>ref|XP_863148.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
12 [Canis familiaris].
Length = 1466
Score = 191 bits (486), Expect(2) = 3e-53
Identities = 126/407 (30%), Positives = 156/407 (38%), Gaps = 12/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G A G G PG
Sbjct: 922 GPKGDAGQPGEKGSPGPQGPPGAPGP---------------LGIAGITGARGLAGPPGIP 966
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 967 GPRGSPGPQGVKGENGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1026
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K G+RGE
Sbjct: 1027 GAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRGPP 1086
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1087 GPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRGPVGPS 1146
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF--------- 879
KDG +G PG +GP G R
Sbjct: 1147 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAALA 1206
Query: 880 ---GYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G + + P + E+ +LKS++ QIE+L++P+GSRK+PAR CRDL+
Sbjct: 1207 AAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLK 1266
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P ++P K
Sbjct: 1267 FCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRK 1313
Score = 37.0 bits (84), Expect(2) = 3e-53
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P KNW+ +S KKHVW E++ GG Y ELP+ F+RLL++
Sbjct: 1311 PRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSS 1362
Score = 69.3 bits (168), Expect = 8e-12
Identities = 66/262 (25%), Positives = 74/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---AGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
G G QGP G+ GETG GPPG AG+K G G P
Sbjct: 601 GGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEP 660
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +GE G PGV G G PG+ GP
Sbjct: 661 GPKGESGSPGVPGG---------------------------KGDSGAPGERGPPGAAGPM 693
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 694 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGAD 753
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG G GLPG+AG G
Sbjct: 754 GAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 813
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 814 GAPGQNGEPGAKGERGAPGEKG 835
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/277 (24%), Positives = 77/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 694 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 732
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G+ G+DG PG+D
Sbjct: 733 GGPGGPGPKGD---------------------------------KGEPGSAGADGAPGKD 759
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G GE
Sbjct: 760 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQN 819
Query: 547 XXQGIRGEKGEPGDK------------------GPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G +GE+G PG+K GP G G+KG G G PG AG G +
Sbjct: 820 GEPGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGR 879
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G PG G G
Sbjct: 880 GLPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGAPG 916
Score = 65.9 bits (159), Expect = 9e-11
Identities = 61/259 (23%), Positives = 70/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G GD G G+ G G+ GPPG G G PG
Sbjct: 118 GRNGDPGIPGQPGSPGSPGPPGICESCPTGPQPNYSPQFESYDVKAGVAGGGIGGYPGPA 177
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G+ G+PGS G PG
Sbjct: 178 GPPGPPGPPGT------------------------------------SGHPGSPGSPGYQ 201
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G+ + G GE
Sbjct: 202 GPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFP 261
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 262 GMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGAR 321
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 322 GNDGARGSDGQPGPPGPPG 340
Score = 63.5 bits (153), Expect = 4e-10
Identities = 63/260 (24%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 319 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGSNGSPGQR 369
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 370 GEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQR 429
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ G RGE
Sbjct: 430 GGAGEPGKNGAKGEPGP------------------RGERGEAGSPGIPGP---------- 461
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G+ G PG+ G GLPG G G G G AG +G
Sbjct: 462 --KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 519
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
+ GR G PG G G+
Sbjct: 520 GAPGEPGRDGVPGGPGMRGM 539
Score = 63.2 bits (152), Expect = 6e-10
Identities = 62/259 (23%), Positives = 74/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 424 GAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAA 483
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG G +G PG GP G
Sbjct: 484 GERGAPGFRGPAGA---------------------------------NGLPGEKGPAGER 510
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G R G GE PPGPPGSN 911
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G+ GA GP G
Sbjct: 912 GAPGSPGISGPKGDSGPPGERGAPGPQG 939
Score = 67.8 bits (164), Expect = 2e-11
Identities = 66/260 (25%), Positives = 78/260 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGSSGAPGQR 368
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 369 GEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGVPGQR 428
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ G RGE
Sbjct: 429 GAAGEPGKNGAKGDP---------------------GPRGERGEAGSPGIAGPKGEDGKD 467
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G G PG G RG+PG +G G GLPG G GD+
Sbjct: 468 GSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDR---------GGPGPAGPR 518
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
+ GR G PG G GI
Sbjct: 519 GVAGEPGRDGLPGGPGLRGI 538
Score = 67.0 bits (162), Expect = 4e-11
Identities = 61/259 (23%), Positives = 71/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G GD GP G G G+ GPPG E G G PG
Sbjct: 118 GRNGDPGPPGSPGSPGSPGPPGIC-ESCPTGGQNYSPQYEAYDVKSGVAGGGIAGYPGPA 176
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G+ G+PG+ G PG
Sbjct: 177 GPPGPPGPPGT------------------------------------SGHPGAPGAPGYQ 200
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G+ + G GE
Sbjct: 201 GPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPGERGFPGPPGMKGPAGMPGFP 260
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG G G+KG G PGLKG NG+ G G G G +
Sbjct: 261 GMKGHRGFDGRNGEKGETGAPGLKGENGVPGENGAPGPMGPRGAPGERGRPGLPGAAGAR 320
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 321 GNDGARGSDGQPGPPGPPG 339
>ref|NP_001159981.1| collagen alpha-1(XI) chain [Bos taurus].
Length = 1817
Score = 139 bits (351), Expect = 4e-33
Identities = 119/420 (28%), Positives = 141/420 (33%), Gaps = 34/420 (8%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1289 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1327
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG DG+PG GPPG
Sbjct: 1328 PGPPGEPGPAGQ---------------------------DGVGGDKGEDGDPGQPGPPGP 1360
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+AG G G G+
Sbjct: 1361 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1420
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
G GE+G PG G G PG G GL GL G G G++
Sbjct: 1421 RGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGE 1480
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYR 903
G G PGA G GI G +GD
Sbjct: 1481 KGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQKGDSGL 1540
Query: 904 ADQPRSP----------PSLRPK------------------DY-----EVDATLKSLNNQ 984
P P P L PK DY E+ +L SL
Sbjct: 1541 PGPPGPPGPPGEVIQPLPILSPKKTRRHAESTQADAGDNILDYNDGMEEIFGSLNSLKQD 1600
Query: 985 IETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1601 IEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1660
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/284 (25%), Positives = 85/284 (29%), Gaps = 24/284 (8%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G +GP GR G TG GPPG AGEK + GF G PG+
Sbjct: 818 RGEDGPEGPKGRAGPTGDPGPPGQAGEK---GKLGVPGLPGYPGRQGPKGSTGFPGFPGA 874
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS------ 345
GE+G GVAG G PG
Sbjct: 875 NGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 934
Query: 346 ------------DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGE 489
GPPG+DG GH G+R + G GE
Sbjct: 935 QGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE 994
Query: 490 XXXXXXXXXXXXXXXXXXXXXQGIRGE------KGEPGDKGPRGLPGLKGHNGLQGLPGL 651
+G +G+ G+ G G RG PG +G G QG PGL
Sbjct: 995 RGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGL 1054
Query: 652 AGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G Q GR G G GPAG
Sbjct: 1055 KGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG 1098
Score = 75.5 bits (184), Expect = 1e-13
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 929 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 988
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 989 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 1015
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 1016 EGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1075
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1076 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1135
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1136 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1170
Score = 72.4 bits (176), Expect = 9e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 981 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFP 1040
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 1041 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1100
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1101 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1142
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1143 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1190
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1191 GQKGDEGARGFPGPPGPIGLQ 1211
Score = 71.6 bits (174), Expect = 1e-12
Identities = 66/261 (25%), Positives = 80/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP+G+ G G GPPG G G +G PG
Sbjct: 664 LLGPRGTPGPIGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 723
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+A G PG+DGPPG
Sbjct: 724 EKGPQGKPGLA---------------------------------------GLPGADGPPG 744
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 745 HPGKEGQSGEKGSLGPPGPQGPIGYP------------GPRG------------------ 774
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 775 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPR------------GEDG 822
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 823 PEGPKGRAGPTGDPGPPGQAG 843
Score = 68.2 bits (165), Expect = 2e-11
Identities = 63/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1054 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1086
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1087 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1146
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1147 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1179
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1180 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1239
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG++G G
Sbjct: 1240 PQGPNGADGPQGPPGSIGSVG 1260
Score = 63.2 bits (152), Expect = 5e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1161 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1208
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1209 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1235
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1236 GPRGPQGPNGADGPQGPPGSIGSVGGV---------GEKGEPGEAGNPGPPGEAGTGGPK 1286
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1287 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1343
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1344 GDKGEDGDPGQPGPPGPSG 1362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 60/264 (22%), Positives = 69/264 (26%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ G G GP G G G GPPG G PG GLPG
Sbjct: 679 IAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPG 738
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G G PG G G G DG PG
Sbjct: 739 ADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 798
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G G+
Sbjct: 799 FKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPPGQAGEKGKLGVPGLPGYPG 858
Query: 541 XXXXQGIRGEKGEPG---DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G G G PG +KG RG+ G G G +G G G G +
Sbjct: 859 RQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 918
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
DG G PG GP G
Sbjct: 919 G---------DGPPGPPGERGPQG 933
>ref|NP_001039664.1| collagen alpha-2(XI) chain precursor [Bos taurus].
Length = 1736
Score = 129 bits (325), Expect = 5e-30
Identities = 104/398 (26%), Positives = 137/398 (34%), Gaps = 11/398 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GPRG++G G TG+ G +GPPG G G G G
Sbjct: 1229 VKGPRGERGEKGETGQAGEAGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDG 1288
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
++G+RG G G G+PG+ G PG
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPG 1348
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G G + G G
Sbjct: 1349 KTGPVGPAGPAGKPGPDGLRGLPGSVG---------QQGRPGATGQAGPPGPVGPPGLPG 1399
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +GEKG PG G G PG +G G +GLPG G G +
Sbjct: 1400 LRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGG 1459
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFY 900
G G GA GPAG + D
Sbjct: 1460 PPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGS 1519
Query: 901 RADQ----------PRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
R Q P SP L E+ +L SL +IE + P G++ +PARTC+DL+
Sbjct: 1520 RLMQEDEAVPTGGAPGSPGGLE----EIFGSLDSLREEIEQMRRPMGTQDSPARTCQDLK 1575
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
L HPE G YW+DPNQGC DA +V+C+F+ GETC+
Sbjct: 1576 LCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCV 1613
Score = 73.2 bits (178), Expect = 5e-13
Identities = 62/267 (23%), Positives = 78/267 (29%), Gaps = 6/267 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++G GD GP G G G GPPG AG + G GLPG
Sbjct: 509 MKGESGDLGPQGPRGPQGLMGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPG 568
Query: 181 SRGERG------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG 342
+G RG LPG G G G
Sbjct: 569 EKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 628
Query: 343 SDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXX 522
DGP G G G +GE + G RG+
Sbjct: 629 MDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPRGKPGLPGMPGSDG 688
Query: 523 XXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
G +G +G G +GP G PG +G G+ G+ GL GH G++
Sbjct: 689 PPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGIKGVDGIRGLKGHKGEKGEDGFPGFKG 748
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G+ G GP G
Sbjct: 749 DMGVKGDRGEVGVPGSRGEDGPEGPKG 775
Score = 72.0 bits (175), Expect = 1e-12
Identities = 66/263 (25%), Positives = 75/263 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+RG G GP G G G GPPG G PG G+PG
Sbjct: 626 VRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPRGKPGLPGMPG 685
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
S G G PG G G G DG PG
Sbjct: 686 SDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGIKGVDGIRGLKGHKGEKGEDGFPG 745
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G+RGE
Sbjct: 746 FKGDMGVKGDRGEVGVP---------------------GSRGE----------------- 767
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G GD GP GL G KG G+ GLPG G G +
Sbjct: 768 -D
Sbjct: 511 GGPGPAGPR---------------------------GAPGEPGRDGVPGGPGMRGMPGSP 543
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+ G PG +G G PG G +G +G PG+ G G +
Sbjct: 544 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPK---------------GND 588
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K+G G PG GP G
Sbjct: 589 GAPGKNGERGGPGGPGPQG 607
Score = 62.8 bits (151), Expect = 7e-10
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
+GP G GP G G+ G GP G G PG G
Sbjct: 618 QGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGD 677
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G+ GERG PG AG + +G G+ GP
Sbjct: 678 SGAPGERGPPGAAGPMGPRGGAGPPGP------------------------EGGKGAAGP 713
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G AG G G++GE
Sbjct: 714 PGPPGSAGTPG------------LQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGP 761
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 762 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGE 821
Query: 715 XXXXXXXXKDGRTGQ---PGAVGPAG 783
G G+ PG GP G
Sbjct: 822 PGAKGERGAPGEKGEGGPPGVAGPPG 847
Score = 57.8 bits (138), Expect = 2e-08
Identities = 66/272 (24%), Positives = 75/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGE---KXXXXXXXXXXXXXXXXXXXXXXAPGFLG 171
L+G G G G G G G PG G PG G
Sbjct: 284 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 343
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PGS G +G G AGS G PG G
Sbjct: 344 FPGSPGAKGEVGPAGS------------------PGSNGSPGQRGEPGPQGHAGAPGPPG 385
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PPG +G G KGE G RG
Sbjct: 386 PPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQRG--------------- 430
Query: 532 XXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
G G KGEPG +G R G+PG KG +G G PG G +G
Sbjct: 431 ---GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERG 487
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
+ G G+ G GPAG R
Sbjct: 488 APGFRGPAGANGLPGEKGPAGERGGPGPAGPR 519
>ref|XP_851009.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 2
[Canis familiaris].
Length = 1465
Score = 191 bits (486), Expect(2) = 3e-53
Identities = 126/407 (30%), Positives = 156/407 (38%), Gaps = 12/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G A G G PG
Sbjct: 921 GPKGDAGQPGEKGSPGPQGPPGAPGP---------------LGIAGITGARGLAGPPGIP 965
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 966 GPRGSPGPQGVKGENGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1025
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K G+RGE
Sbjct: 1026 GAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRGPP 1085
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1086 GPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRGPVGPS 1145
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF--------- 879
KDG +G PG +GP G R
Sbjct: 1146 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAALA 1205
Query: 880 ---GYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G + + P + E+ +LKS++ QIE+L++P+GSRK+PAR CRDL+
Sbjct: 1206 AAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLK 1265
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P ++P K
Sbjct: 1266 FCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRK 1312
Score = 37.0 bits (84), Expect(2) = 3e-53
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P KNW+ +S KKHVW E++ GG Y ELP+ F+RLL++
Sbjct: 1310 PRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSS 1361
Score = 69.3 bits (168), Expect = 8e-12
Identities = 66/262 (25%), Positives = 74/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---AGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
G G QGP G+ GETG GPPG AG+K G G P
Sbjct: 600 GGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEP 659
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +GE G PGV G G PG+ GP
Sbjct: 660 GPKGESGSPGVPGG---------------------------KGDSGAPGERGPPGAAGPM 692
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGAD 752
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG G GLPG+AG G
Sbjct: 753 GAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 812
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 813 GAPGQNGEPGAKGERGAPGEKG 834
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/277 (24%), Positives = 77/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 731
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G+ G+DG PG+D
Sbjct: 732 GGPGGPGPKGD---------------------------------KGEPGSAGADGAPGKD 758
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G GE
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQN 818
Query: 547 XXQGIRGEKGEPGDK------------------GPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G +GE+G PG+K GP G G+KG G G PG AG G +
Sbjct: 819 GEPGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGR 878
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G PG G G
Sbjct: 879 GLPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGAPG 915
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/271 (23%), Positives = 75/271 (27%), Gaps = 11/271 (4%)
Frame = +1
Query: 4 RGPRGDQGPVG---RTGETGASGPPGFAG--------EKXXXXXXXXXXXXXXXXXXXXX 150
+GP+GD GP G R G+ G G PG G E
Sbjct: 105 QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGV 164
Query: 151 XAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD 330
G G PG G G PG G+
Sbjct: 165 AGGGIGGYPGPAGPPGPPGPPGT------------------------------------S 188
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G+PGS G PG G G G+ + G GE
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPP 248
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 249 GMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGER 308
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 63.5 bits (153), Expect = 4e-10
Identities = 63/260 (24%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGSNGSPGQR 368
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 369 GEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQR 428
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ G RGE
Sbjct: 429 GGAGEPGKNGAKGEPGP------------------RGERGEAGSPGIPGP---------- 460
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G+ G PG+ G GLPG G G G G AG +G
Sbjct: 461 --KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
+ GR G PG G G+
Sbjct: 519 GAPGEPGRDGVPGGPGMRGM 538
Score = 63.2 bits (152), Expect = 6e-10
Identities = 62/259 (23%), Positives = 74/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 423 GAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAA 482
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG G +G PG GP G
Sbjct: 483 GERGAPGFRGPAGA---------------------------------NGLPGEKGPAGER 509
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G R G GE
Sbjct: 510 GGPGPAGPR---------------------------GAPGEPGRDGVPGGPGMRGMPGSP 542
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+ G PG +G G PG G +G +G PG+ G G +
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPK---------------GND 587
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K+G G PG GP G
Sbjct: 588 GAPGKNGERGGPGGPGPQG 606
Score = 62.8 bits (151), Expect = 7e-10
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
+GP G GP G G+ G GP G G PG G
Sbjct: 617 QGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGD 676
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G+ GERG PG AG + +G G+ GP
Sbjct: 677 SGAPGERGPPGAAGPMGPRGGAGPPGP------------------------EGGKGAAGP 712
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G AG G G++GE
Sbjct: 713 PGPPGSAGTPG------------LQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGP 760
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGE 820
Query: 715 XXXXXXXXKDGRTGQ---PGAVGPAG 783
G G+ PG GP G
Sbjct: 821 PGAKGERGAPGEKGEGGPPGVAGPPG 846
Score = 57.8 bits (138), Expect = 2e-08
Identities = 66/272 (24%), Positives = 75/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGE---KXXXXXXXXXXXXXXXXXXXXXXAPGFLG 171
L+G G G G G G G PG G PG G
Sbjct: 283 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PGS G +G G AGS G PG G
Sbjct: 343 FPGSPGAKGEVGPAGS------------------PGSNGSPGQRGEPGPQGHAGAPGPPG 384
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PPG +G G KGE G RG
Sbjct: 385 PPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQRG--------------- 429
Query: 532 XXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
G G KGEPG +G R G+PG KG +G G PG G +G
Sbjct: 430 ---GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
+ G G+ G GPAG R
Sbjct: 487 APGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
>ref|XP_863124.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
11 [Canis familiaris].
Length = 1450
Score = 191 bits (486), Expect(2) = 3e-53
Identities = 126/407 (30%), Positives = 156/407 (38%), Gaps = 12/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G A G G PG
Sbjct: 906 GPKGDAGQPGEKGSPGPQGPPGAPGP---------------LGIAGITGARGLAGPPGIP 950
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 951 GPRGSPGPQGVKGENGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1010
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K G+RGE
Sbjct: 1011 GAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRGPP 1070
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1071 GPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRGPVGPS 1130
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF--------- 879
KDG +G PG +GP G R
Sbjct: 1131 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAALA 1190
Query: 880 ---GYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G + + P + E+ +LKS++ QIE+L++P+GSRK+PAR CRDL+
Sbjct: 1191 AAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLK 1250
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P ++P K
Sbjct: 1251 FCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRK 1297
Score = 37.0 bits (84), Expect(2) = 3e-53
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P KNW+ +S KKHVW E++ GG Y ELP+ F+RLL++
Sbjct: 1295 PRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSS 1346
Score = 69.3 bits (168), Expect = 8e-12
Identities = 66/262 (25%), Positives = 74/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---AGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
G G QGP G+ GETG GPPG AG+K G G P
Sbjct: 585 GGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEP 644
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +GE G PGV G G PG+ GP
Sbjct: 645 GPKGESGSPGVPGG---------------------------KGDSGAPGERGPPGAAGPM 677
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 678 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGAD 737
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG G GLPG+AG G
Sbjct: 738 GAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 797
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 798 GAPGQNGEPGAKGERGAPGEKG 819
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/277 (24%), Positives = 77/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 678 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 716
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G+ G+DG PG+D
Sbjct: 717 GGPGGPGPKGD---------------------------------KGEPGSAGADGAPGKD 743
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G GE
Sbjct: 744 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQN 803
Query: 547 XXQGIRGEKGEPGDK------------------GPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G +GE+G PG+K GP G G+KG G G PG AG G +
Sbjct: 804 GEPGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGR 863
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G PG G G
Sbjct: 864 GLPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGAPG 900
Score = 63.5 bits (153), Expect = 4e-10
Identities = 63/260 (24%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 303 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGSNGSPGQR 353
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 354 GEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQR 413
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ G RGE
Sbjct: 414 GGAGEPGKNGAKGEPGP------------------RGERGEAGSPGIPGP---------- 445
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G+ G PG+ G GLPG G G G G AG +G
Sbjct: 446 --KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 503
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
+ GR G PG G G+
Sbjct: 504 GAPGEPGRDGVPGGPGMRGM 523
Score = 63.2 bits (152), Expect = 6e-10
Identities = 62/259 (23%), Positives = 74/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 408 GAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAA 467
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG G +G PG GP G
Sbjct: 468 GERGAPGFRGPAGA---------------------------------NGLPGEKGPAGER 494
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G R G GE
Sbjct: 495 GGPGPAGPR---------------------------GAPGEPGRDGVPGGPGMRGMPGSP 527
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+ G PG +G G PG G +G +G PG+ G G +
Sbjct: 528 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPK---------------GND 572
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K+G G PG GP G
Sbjct: 573 GAPGKNGERGGPGGPGPQG 591
Score = 62.8 bits (151), Expect = 7e-10
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
+GP G GP G G+ G GP G G PG G
Sbjct: 602 QGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGD 661
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G+ GERG PG AG + +G G+ GP
Sbjct: 662 SGAPGERGPPGAAGPMGPRGGAGPPGP------------------------EGGKGAAGP 697
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G AG G G++GE
Sbjct: 698 PGPPGSAGTPG------------LQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGP 745
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 746 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGE 805
Query: 715 XXXXXXXXKDGRTGQ---PGAVGPAG 783
G G+ PG GP G
Sbjct: 806 PGAKGERGAPGEKGEGGPPGVAGPPG 831
Score = 62.4 bits (150), Expect = 1e-09
Identities = 64/258 (24%), Positives = 71/258 (27%)
Frame = +1
Query: 10 PRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRG 189
P GP G G+ G G PG G+ PG G PGS G
Sbjct: 98 PPNGHGPQGPKGDPGPPGIPGRNGD------------------------PGIPGQPGSPG 133
Query: 190 ERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRDG 369
G PG+ S G PG GPPG G
Sbjct: 134 SPGPPGICESCPTGPQNYSPQFESYDVKAGVAGGGIGGYPGPAGP-PGPPGYQGPPGEPG 192
Query: 370 QAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXX 549
QAG G + G GE
Sbjct: 193 QAGPAGP------PGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPG 246
Query: 550 XQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXX 729
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 247 MKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARG 306
Query: 730 XXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 307 NDGARGSDGQPGPPGPPG 324
Score = 60.5 bits (145), Expect = 4e-09
Identities = 64/277 (23%), Positives = 79/277 (28%), Gaps = 17/277 (6%)
Frame = +1
Query: 4 RGPRGDQGP------------VGRTGETGASGPPGF-----AGEKXXXXXXXXXXXXXXX 132
+GP+GD GP G+ G G+ GPPG G +
Sbjct: 105 QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGV 164
Query: 133 XXXXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 312
PG G PG G +G PG G
Sbjct: 165 AGGGIGGYPGPAGPPGPPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRP 224
Query: 313 XXXXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX 492
G PG GP G G G KG R ++G +G+
Sbjct: 225 GERGLPGPPGMKGPAGMPGFPGMKGHR---------------------GFDGRNGEKGD- 262
Query: 493 XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G+ GE G PG GPRG PG +G GL G G G+ G +
Sbjct: 263 -----------TGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGAR 311
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
DG+ G PG G AG
Sbjct: 312 ---------------------GSDGQPGPPGPPGTAG 327
Score = 57.8 bits (138), Expect = 2e-08
Identities = 66/272 (24%), Positives = 75/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGE---KXXXXXXXXXXXXXXXXXXXXXXAPGFLG 171
L+G G G G G G G PG G PG G
Sbjct: 268 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 327
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PGS G +G G AGS G PG G
Sbjct: 328 FPGSPGAKGEVGPAGS------------------PGSNGSPGQRGEPGPQGHAGAPGPPG 369
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PPG +G G KGE G RG
Sbjct: 370 PPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQRG--------------- 414
Query: 532 XXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
G G KGEPG +G R G+PG KG +G G PG G +G
Sbjct: 415 ---GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERG 471
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
+ G G+ G GPAG R
Sbjct: 472 APGFRGPAGANGLPGEKGPAGERGGPGPAGPR 503
>ref|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform 9
[Canis familiaris].
Length = 1062
Score = 191 bits (486), Expect(2) = 3e-53
Identities = 126/407 (30%), Positives = 156/407 (38%), Gaps = 12/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G A G G PG
Sbjct: 518 GPKGDAGQPGEKGSPGPQGPPGAPGP---------------LGIAGITGARGLAGPPGIP 562
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 563 GPRGSPGPQGVKGENGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 622
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K G+RGE
Sbjct: 623 GAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRGPP 682
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 683 GPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRGPVGPS 742
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF--------- 879
KDG +G PG +GP G R
Sbjct: 743 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAALA 802
Query: 880 ---GYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G + + P + E+ +LKS++ QIE+L++P+GSRK+PAR CRDL+
Sbjct: 803 AAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLK 862
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P ++P K
Sbjct: 863 FCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRK 909
Score = 37.0 bits (84), Expect(2) = 3e-53
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P KNW+ +S KKHVW E++ GG Y ELP+ F+RLL++
Sbjct: 907 PRKNWWTDSGAEKKHVWFGESMDGGFQFGYGNPELPEDVLDVQLAFLRLLSS 958
Score = 69.3 bits (168), Expect = 8e-12
Identities = 66/262 (25%), Positives = 74/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---AGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
G G QGP G+ GETG GPPG AG+K G G P
Sbjct: 197 GGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEP 256
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +GE G PGV G G PG+ GP
Sbjct: 257 GPKGESGSPGVPGG---------------------------KGDSGAPGERGPPGAAGPM 289
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 290 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGAD 349
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG G GLPG+AG G
Sbjct: 350 GAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 409
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 410 GAPGQNGEPGAKGERGAPGEKG 431
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/277 (24%), Positives = 77/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 290 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 328
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G+ G+DG PG+D
Sbjct: 329 GGPGGPGPKGD---------------------------------KGEPGSAGADGAPGKD 355
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G GE
Sbjct: 356 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQN 415
Query: 547 XXQGIRGEKGEPGDK------------------GPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G +GE+G PG+K GP G G+KG G G PG AG G +
Sbjct: 416 GEPGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGR 475
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G PG G G
Sbjct: 476 GLPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGAPG 512
Score = 62.8 bits (151), Expect = 7e-10
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
+GP G GP G G+ G GP G G PG G
Sbjct: 214 QGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGD 273
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G+ GERG PG AG + +G G+ GP
Sbjct: 274 SGAPGERGPPGAAGPMGPRGGAGPPGP------------------------EGGKGAAGP 309
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G AG G G++GE
Sbjct: 310 PGPPGSAGTPG------------LQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGP 357
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 358 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGE 417
Query: 715 XXXXXXXXKDGRTGQ---PGAVGPAG 783
G G+ PG GP G
Sbjct: 418 PGAKGERGAPGEKGEGGPPGVAGPPG 443
Score = 53.9 bits (128), Expect = 3e-07
Identities = 41/153 (26%), Positives = 45/153 (29%)
Frame = +1
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G+PG GP G DG+ G GE G GE
Sbjct: 140 GSPGIPGPKGEDGKDGSPGEPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 199
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
QG G G GDKG G PG +G GL G G G +G
Sbjct: 200 GPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPK 259
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G PGA GP G R
Sbjct: 260 GESGSPGVPGGKGDSGAPGERGPPGAAGPMGPR 292
>ref|XP_535998.2| PREDICTED: similar to Collagen alpha 2(V) chain precursor [Canis
familiaris].
Length = 1480
Score = 204 bits (519), Expect = 2e-52
Identities = 132/407 (32%), Positives = 166/407 (40%), Gaps = 11/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RGD G GR G+ G +GPPG G+K G +G+PG R
Sbjct: 923 GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQR 982
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG+PG+ G +G G+DG PGRD
Sbjct: 983 GERGMPGLPGPAGTPGKVGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1042
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G+R G RG+
Sbjct: 1043 GAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPVGPPGRIGKRGLL 1102
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KG+ GD+G RG G +G GLQGLPG G +G+Q
Sbjct: 1103 GPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPV 1162
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXX----------YD 876
K+G G G +GP G+R YD
Sbjct: 1163 GPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYD 1222
Query: 877 FGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRL 1053
+ ++ P R K D V ATLKSL++QIET+ +P+GS+K+PARTC DL+L
Sbjct: 1223 ESMPDPLPEFTEDQAAPDDRNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKL 1282
Query: 1054 SHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAKT 1194
H SG YWIDPNQG DAIKVYC+ TGETCI A P +IP KT
Sbjct: 1283 CHSAKQSGEYWIDPNQGSVEDAIKVYCNMDTGETCISANPSSIPRKT 1329
Score = 75.9 bits (185), Expect = 8e-14
Identities = 64/261 (24%), Positives = 74/261 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GP G GP+G GE G GPPG G + PG +GLPG
Sbjct: 561 VQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQ---------------------PGSMGLPG 599
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G G PG G G PG G G
Sbjct: 600 PKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQG 659
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE G RGE
Sbjct: 660 LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHG 719
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G G G PGD GP GL G+ G G+ G PG G G
Sbjct: 720 PDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG------------GIGEKG 767
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG +GP G
Sbjct: 768 AEGTAGNDGARGLPGPLGPPG 788
Score = 73.6 bits (179), Expect = 4e-13
Identities = 69/265 (26%), Positives = 80/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG++G G GE G +G PG G PG G+PG R
Sbjct: 689 GPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGER 748
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G DG G GP G
Sbjct: 749 GIAGTPGPKGD---------------------RGGIGEKGAEGTAGNDGARGLPGPLGPP 787
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG GE+ GN G
Sbjct: 788 GPAGPTGEK------------GEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPD 835
Query: 547 XXQGIRGEKGEPGDK------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G++GE GEPG K GP+GL G G +G G+PGL G G Q
Sbjct: 836 GQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQ---------GPP 886
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
+ G G PGA GPAG
Sbjct: 887 GATGFPGSAGRVGPPGPPGAPGPAG 911
Score = 72.4 bits (176), Expect = 9e-13
Identities = 64/268 (23%), Positives = 78/268 (29%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +G+ GP G G G GP G GE+ G LG+PGS
Sbjct: 299 GSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGTHGMPGKPGPMGPLGIPGSS 358
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG+ G DG PG+ GP G
Sbjct: 359 GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGLPGTVGTDGTPGAKGPTGSP 418
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G +G G G +GE
Sbjct: 419 GTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPP 478
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
+G RG +G+PG GP RG PG +G G GLPG G G++
Sbjct: 479 GEEGKRGPRGDPGTVGPPGSMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQ 538
Query: 709 XXXXXXXXXXKDGR---TGQPGAVGPAG 783
G TG PG GP G
Sbjct: 539 GDPGRPGEPGLPGARGLTGNPGVQGPEG 566
Score = 70.5 bits (171), Expect = 4e-12
Identities = 69/277 (24%), Positives = 81/277 (29%), Gaps = 15/277 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPG---------FAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
RGPRGD G VG G G G PG G K
Sbjct: 484 RGPRGDPGTVGPPGSMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGR 543
Query: 157 PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
PG GLPG+RG G PGV G G+
Sbjct: 544 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 603
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G G PG G AG G+R + G G
Sbjct: 604 SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGP 663
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGL---PGLKGHNGLQGLPG---LAGHHGDQXX 678
QG+ G+ G G GPRG PG +G G+ GLPG +AG HG
Sbjct: 664 PGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP 723
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G +G PG GP G++
Sbjct: 724 KG------------------SPGPSGTPGDTGPPGLQ 742
Score = 66.2 bits (160), Expect = 7e-11
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFA------GEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RGP+G G G G+ GA GPPG G PG
Sbjct: 136 RGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGS 195
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
+G G RG +GL G G V G PG
Sbjct: 196 VGPVGPRGPQGLQGQQGGVGPTGPPGEPGEPGPMGPIGARGPEGP---------PGKPGE 246
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
DG PGR+G G G G +GE
Sbjct: 247 DGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGATGSKGEAGP 306
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G RG GE G GP+G PG +G +G+ G PG G G
Sbjct: 307 TGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGTHGMPGKPGPMGPLGIPGSSGFPGNPGM 366
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
+G GQ G GP G
Sbjct: 367 KGEAGPTGARGPEGPQGQRGETGPPG 392
>ref|XP_862974.1| PREDICTED: similar to procollagen, type III, alpha 1 isoform 6 [Canis
familiaris].
Length = 1384
Score = 191 bits (486), Expect(2) = 1e-51
Identities = 126/407 (30%), Positives = 156/407 (38%), Gaps = 12/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G A G G PG
Sbjct: 921 GPKGDAGQPGEKGSPGPQGPPGAPGP---------------LGIAGITGARGLAGPPGIP 965
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 966 GPRGSPGPQGVKGENGKPGPSGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1025
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K G+RGE
Sbjct: 1026 GAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAGSRGPP 1085
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1086 GPQGPRGDKGETGERGLNGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRGPVGPS 1145
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF--------- 879
KDG +G PG +GP G R
Sbjct: 1146 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAALA 1205
Query: 880 ---GYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G + + P + E+ +LKS++ QIE+L++P+GSRK+PAR CRDL+
Sbjct: 1206 AAGGEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVSGQIESLVSPDGSRKHPARNCRDLK 1265
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
HPE SG YW+DPNQGC +DAIKV+C+ TGETC+ A P ++P K
Sbjct: 1266 FCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCLNASPGSVPRK 1312
Score = 31.2 bits (69), Expect(2) = 1e-51
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGG 1253
P KNW+ +S KKHVW E++ GG
Sbjct: 1310 PRKNWWTDSGAEKKHVWFGESMDGG 1334
Score = 69.3 bits (168), Expect = 8e-12
Identities = 66/262 (25%), Positives = 74/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---AGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
G G QGP G+ GETG GPPG AG+K G G P
Sbjct: 600 GGPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEP 659
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +GE G PGV G G PG+ GP
Sbjct: 660 GPKGESGSPGVPGG---------------------------KGDSGAPGERGPPGAAGPM 692
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGAD 752
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG G GLPG+AG G
Sbjct: 753 GAPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 812
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 813 GAPGQNGEPGAKGERGAPGEKG 834
Score = 68.6 bits (166), Expect = 1e-11
Identities = 67/277 (24%), Positives = 77/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G GA+GPPG G PG G+PG R
Sbjct: 693 GPRGGAGPPGPEGGKGAAGPPGPPGSAG---------------------TPGLQGMPGER 731
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G+ G+DG PG+D
Sbjct: 732 GGPGGPGPKGD---------------------------------KGEPGSAGADGAPGKD 758
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G GE
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQN 818
Query: 547 XXQGIRGEKGEPGDK------------------GPRGLPGLKGHNGLQGLPGLAGHHGDQ 672
G +GE+G PG+K GP G G+KG G G PG AG G +
Sbjct: 819 GEPGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGR 878
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G PG G G
Sbjct: 879 GLPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGAPG 915
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/271 (23%), Positives = 75/271 (27%), Gaps = 11/271 (4%)
Frame = +1
Query: 4 RGPRGDQGPVG---RTGETGASGPPGFAG--------EKXXXXXXXXXXXXXXXXXXXXX 150
+GP+GD GP G R G+ G G PG G E
Sbjct: 105 QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGV 164
Query: 151 XAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD 330
G G PG G G PG G+
Sbjct: 165 AGGGIGGYPGPAGPPGPPGPPGT------------------------------------S 188
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G+PGS G PG G G G+ + G GE
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAMGPSGPAGKDGESGRPGRPGERGLPGPP 248
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 249 GMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGER 308
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 63.5 bits (153), Expect = 4e-10
Identities = 63/260 (24%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGSNGSPGQR 368
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 369 GEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQR 428
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ G RGE
Sbjct: 429 GGAGEPGKNGAKGEPGP------------------RGERGEAGSPGIPGP---------- 460
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G+ G PG+ G GLPG G G G G AG +G
Sbjct: 461 --KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
+ GR G PG G G+
Sbjct: 519 GAPGEPGRDGVPGGPGMRGM 538
Score = 63.2 bits (152), Expect = 6e-10
Identities = 62/259 (23%), Positives = 74/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 423 GAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAA 482
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG PG G +G PG GP G
Sbjct: 483 GERGAPGFRGPAGA---------------------------------NGLPGEKGPAGER 509
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G R G GE
Sbjct: 510 GGPGPAGPR---------------------------GAPGEPGRDGVPGGPGMRGMPGSP 542
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+ G PG +G G PG G +G +G PG+ G G +
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPK---------------GND 587
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K+G G PG GP G
Sbjct: 588 GAPGKNGERGGPGGPGPQG 606
Score = 62.8 bits (151), Expect = 7e-10
Identities = 64/266 (24%), Positives = 75/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
+GP G GP G G+ G GP G G PG G
Sbjct: 617 QGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKGD 676
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
G+ GERG PG AG + +G G+ GP
Sbjct: 677 SGAPGERGPPGAAGPMGPRGGAGPPGP------------------------EGGKGAAGP 712
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G AG G G++GE
Sbjct: 713 PGPPGSAGTPG------------LQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGP 760
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G G G+PGDKG G PGL G G +G PG G HG
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGE 820
Query: 715 XXXXXXXXKDGRTGQ---PGAVGPAG 783
G G+ PG GP G
Sbjct: 821 PGAKGERGAPGEKGEGGPPGVAGPPG 846
Score = 57.8 bits (138), Expect = 2e-08
Identities = 66/272 (24%), Positives = 75/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGE---KXXXXXXXXXXXXXXXXXXXXXXAPGFLG 171
L+G G G G G G G PG G PG G
Sbjct: 283 LKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PGS G +G G AGS G PG G
Sbjct: 343 FPGSPGAKGEVGPAGS------------------PGSNGSPGQRGEPGPQGHAGAPGPPG 384
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PPG +G G KGE G RG
Sbjct: 385 PPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGAPGQRG--------------- 429
Query: 532 XXXXXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
G G KGEPG +G R G+PG KG +G G PG G +G
Sbjct: 430 ---GAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
+ G G+ G GPAG R
Sbjct: 487 APGFRGPAGANGLPGEKGPAGERGGPGPAGPR 518
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,535,806
Number of extensions: 790841
Number of successful extensions: 21748
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 8742
Number of HSP's successfully gapped: 393
Length of query: 447
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 341
Effective length of database: 15,340,888
Effective search space: 5231242808
Effective search space used: 5231242808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKG 826
Query: 721 XXXXXXKDGRTGQPGAVGPAGIR 789
K G G+ G GP G R
Sbjct: 827 ARGLSGKSGPRGERGPTGPRGQR 849
Score = 72.0 bits (175), Expect = 1e-12
Identities = 67/260 (25%), Positives = 78/260 (30%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G +GP GRTG TG GPPG GEK PG+ G G
Sbjct: 765 RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGL---------------PGYPGRQGP 809
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG G+ G G G
Sbjct: 810 KGSLGFPGFPGA---------------------------------------SGEKGARGL 830
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G++G +GER G RG+
Sbjct: 831 SGKSGPRGERGPT------------------------GPRGQRGPRGATGKSGAKGTSGG 866
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
G GE+G PG +GP G PG KG G G GL GH G +
Sbjct: 867 DGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQR---------------GE 911
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
K G G PG VGP G
Sbjct: 912 VGFQGKTGPPGPPGVVGPQG 931
Score = 68.9 bits (167), Expect = 1e-11
Identities = 62/262 (23%), Positives = 75/262 (28%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP+G G+ GA+G G G + G GLPG
Sbjct: 1105 GPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1164
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G G G + G PG G PG
Sbjct: 1165 GEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGVQ 1224
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G KG R + G GE
Sbjct: 1225 GEPGVKGPRGERGEKG------------------ETGQAGEAGPPGPKGPTGDDGPKGNP 1266
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK---GHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G G+ G PG+ GPRG G K G +G G PG G G+
Sbjct: 1267 GPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTP 1326
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G PGAVG G
Sbjct: 1327 GPEGRQGEKGAKGDPGAVGAPG 1348
Score = 67.8 bits (164), Expect = 2e-11
Identities = 64/259 (24%), Positives = 73/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 928 GPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFP 987
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG AG G PG GPPG
Sbjct: 988 GERGLPGTAGG---PGLKGNEGPAGPPGPAGSPGERGSAGSGGPIGPPGRPGPQGPPGAA 1044
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G GE+ G G+
Sbjct: 1045 GEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD------KGEVGDPGQKGAK 1098
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G G PG GP G PG G +G G G GH G +
Sbjct: 1099 GNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1158
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G+ G VGP G
Sbjct: 1159 GLPGPSGEKGETGDVGPMG 1177
Score = 64.3 bits (155), Expect = 2e-10
Identities = 63/263 (23%), Positives = 72/263 (27%), Gaps = 3/263 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G +GP G G G GPPG G PG G PG +
Sbjct: 1180 GPPGPRGPAGPNGADGPQGPPGGVGN---------------LGPPGEKGEPGESGSPGVQ 1224
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G+ G G G G GPPG
Sbjct: 1225 GEPGVKGPRGE------------------------------RGEKGETGQAGEAGPPGPK 1254
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G + G+RGE
Sbjct: 1255 GPTGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1314
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RG G PG +G +G G KG G G PG G G
Sbjct: 1315 GPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSV 1374
Query: 727 XXXXKDGRTGQ---PGAVGPAGI 786
+ G TGQ PG VGP G+
Sbjct: 1375 GQQGRPGATGQAGPPGPVGPPGL 1397
>ref|NP_001192553.1| collagen alpha-3(V) chain [Bos taurus].
Length = 1745
Score = 123 bits (308), Expect = 4e-28
Identities = 105/399 (26%), Positives = 133/399 (33%), Gaps = 14/399 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG+ G G TG +GA+GPPG G PG G G
Sbjct: 1224 GPRGEVGEKGDTGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDLGPPGDPGVSGQDGPP 1283
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G PG G G PG DGPPGR
Sbjct: 1284 GEKGNPGDVGGPGPPGASGEPGAPGPPGKRGPSGRMGQEGREGEKGAKGEPGPDGPPGRT 1343
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX---KHGNRGEXXXXXXXXXXXXXXXX 537
G G +G G G
Sbjct: 1344 GPVGARGPPGRVGPEGLRGIPGPVGEPGLLGPPGLLGPPGPLGPSGLPGLKGDAGPKGEK 1403
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG------HHGDQXXXXXXXXX 699
G+ G GE G+KG +GLPG++G GLQG PG G H G Q
Sbjct: 1404 GHIGLIGLVGPPGEVGEKGDQGLPGVQGSPGLQGEPGSPGPIGSLGHPGPQGVVGPPGQK 1463
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPA----GIRXXXXXXXXXXXXXXXXXXXXXXXXXX 867
G G PG GP+ G+R
Sbjct: 1464 GSKGSPGSQGPRGDAGPPGPPGPPGPSAELHGLRRRRRSLLGLGTP-------------- 1509
Query: 868 XYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ G E EV A++ SL+ ++E L P G+ + P C++L
Sbjct: 1510 --EGGLE--------------------EVLASMASLSFELEQLRRPPGTAERPGLVCKEL 1547
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
SHP G YWIDPNQGC DA++V+C+F+ GETC+
Sbjct: 1548 HRSHPHLPDGEYWIDPNQGCARDALRVFCNFTAGGETCL 1586
Score = 72.8 bits (177), Expect = 7e-13
Identities = 65/265 (24%), Positives = 83/265 (31%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +GD GP+G G+ G GP GF G PG +G GS
Sbjct: 957 GAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGDPGPTGLKGDKGP------PGPVGANGSP 1010
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG G AGS+ G G GPPG
Sbjct: 1011 GERGPVGPAGSIGLPGQSGGQGPVGPTGEKGSPGERGAPGPTGKDGIPGPLGLPGPPGAA 1070
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G +G +G++ G++G+
Sbjct: 1071 GPSGEEGDKGEVGAPGHKG---------------SKGDKGDAGPPGPTGIRGLVGHPGSP 1115
Query: 547 XXQGIRGEKGEPG------DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G +G +G PG D G RG PG+ G GLQG+PG AG G+
Sbjct: 1116 GADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQGMPGPAGEKGEVGDVGSMGPHGAP 1175
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
+G G PG VG G
Sbjct: 1176 GPRGPQGPSGSEGPPGLPGGVGQPG 1200
Score = 71.6 bits (174), Expect = 1e-12
Identities = 68/261 (26%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GP G G GR G G G PG GE G +G G
Sbjct: 478 MKGPPGPVGLTGRPGPVGLPGYPGLKGE---MGEMGPQGPRGLQGPHGPPGREGKMGRAG 534
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G RGLPG G DG G++GPPG
Sbjct: 535 ADGARGLPGATG---PKGDRGFDGLPGLPGEKGQRGDFGYVGKPGPPGEDGRKGAEGPPG 591
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
GQAG G R GN G
Sbjct: 592 PTGQAGEPGPRGLIGPRGSPGPLGRPGVIGSDGAPGAKGNVG------------PPGEPG 639
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QG G +G PG +GP G PG KG G G+PGL G G
Sbjct: 640 PPGQQGNPGSQGIPGPQGPIGTPGEKGPPGNPGIPGLPGSEG------------------ 681
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+G TG+ GA GPAG
Sbjct: 682 PPGHPGHEGPTGEKGAQGPAG 702
Score = 70.1 bits (170), Expect = 4e-12
Identities = 62/261 (23%), Positives = 77/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP+GR G G+ G PG G G +G PG
Sbjct: 604 LIGPRGSPGPLGRPGVIGSDGAPGAKGNVGPPGEPGPPGQQGNPGSQGIPGPQGPIGTPG 663
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G G PG+ G PGS+GPPG
Sbjct: 664 EKGPPGNPGIPGL---------------------------------------PGSEGPPG 684
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE+ G +GE
Sbjct: 685 HPGHEGPTGEKGAQGPAGSAGPPGYPGPRGVKGTSGNRGLQGE------KGEKGEDGFPG 738
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G++G++G+PG GPR G G GL+G GL G G
Sbjct: 739 FKGDAGLKGDRGQPGPPGPR---GEDGPEGLKGQEGLLGEEGPPGSAGEKGKLGVPGLPG 795
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
G G PG +GP G
Sbjct: 796 YPGRPGPKGSIGFPGPLGPLG 816
Score = 70.1 bits (170), Expect = 4e-12
Identities = 66/264 (25%), Positives = 79/264 (29%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGA---SGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
GPRG+ GP G G+ G GPPG AGEK PG+ G P
Sbjct: 756 GPRGEDGPEGLKGQEGLLGEEGPPGSAGEK---------------GKLGVPGLPGYPGRP 800
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +G G PG G + G PG G
Sbjct: 801 GPKGSIGFPGPLGPL---GEKGKRGKAGQPGLEGERGPPGARGERGQPGATGQPGPKGDV 857
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+DG G GE+ G+ G+
Sbjct: 858 GQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGVPGHPGQRGELGFQGQTGPPGPA 917
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
QG GE G G++GP G PG G GL GL G G GD
Sbjct: 918 GVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGREGAKGDVGPLGPLGKEGPPGPR 977
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G PG GP G++
Sbjct: 978 GF------PGPHGAPGDPGPTGLK 995
Score = 70.1 bits (170), Expect = 4e-12
Identities = 66/270 (24%), Positives = 76/270 (28%), Gaps = 9/270 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASG------PPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFL 168
GP G +G VG G GA G PPG G+K PG
Sbjct: 1101 GPTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGP---------PGLQ 1151
Query: 169 GLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSD 348
G+PG GE+G G GS+ G PG
Sbjct: 1152 GMPGPAGEKGEVGDVGSMGPHGAPGPRGPQGPSGSEGPPGLPGGVGQPGAVGEKGEPGEP 1211
Query: 349 GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
G PG G G G R + G +G
Sbjct: 1212 GDPGPPGTPGTPGPRGEVGEKGDTGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDLGPP 1271
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL---AGHHGDQXXXXXXXXX 699
G GEKG PGD G G PG G G G PG +G G +
Sbjct: 1272 GDPGVSGQDGPPGEKGNPGDVGGPGPPGASGEPGAPGPPGKRGPSGRMGQEGREGEKGAK 1331
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G PG VGP G+R
Sbjct: 1332 GEPGPDGPPGRTGPVGARGPPGRVGPEGLR 1361
Score = 68.9 bits (167), Expect = 1e-11
Identities = 69/271 (25%), Positives = 78/271 (28%), Gaps = 12/271 (4%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGA------SGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFL 168
GP G G G TGE GA +GPPG+ G + PGF
Sbjct: 681 GPPGHPGHEGPTGEKGAQGPAGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFK 740
Query: 169 GLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSD 348
G G +G+RG PG G G PG
Sbjct: 741 GDAGLKGDRGQPGPPGPRGEDGPEGLKGQEGLLGEEGPPGSAGEKGKLGVPGLPGYPGRP 800
Query: 349 GP------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
GP PG G G KG+R G RGE
Sbjct: 801 GPKGSIGFPGPLGPLGEKGKRGKAGQPGLEGERGPP------------GARGERGQPGAT 848
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
G GEKG PG +GP G G KG G QG G+ GH G +
Sbjct: 849 GQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGVPGHPGQRGELGFQ 908
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G G GP G
Sbjct: 909 GQTGPPGPAGVVGPQGKTGEAGPLGERGPPG 939
Score = 62.8 bits (151), Expect = 7e-10
Identities = 62/260 (23%), Positives = 73/260 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G +G GPPGF G++ PG GLPG
Sbjct: 393 GPPGAPGPQGVVGPSGPPGPPGFPGDR---------------------GLPGPAGLPGIP 431
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G+ G+ G+V G PG G GR
Sbjct: 432 GMDGIRGLPGTVIMMPFQFARGSHKGPPVSFQQAQAQAVLQQAQLSMKGPPGPVGLTGRP 491
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G +GE
Sbjct: 492 GPVGLPG---------------------------YPGLKGEMGEMGPQGPRGLQGPHGPP 524
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G G G +G G G KG G GLPGL G G +
Sbjct: 525 GREGKMGRAGADGARGLPGATGPKGDRGFDGLPGLPGEKGQRGDFGYVGKPGPPGEDGRK 584
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G TGQ G GP G+
Sbjct: 585 GAEGPPGPTGQAGEPGPRGL 604
Score = 62.8 bits (151), Expect = 7e-10
Identities = 67/281 (23%), Positives = 78/281 (27%), Gaps = 18/281 (6%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPP---------GFAGEKXXXXXXXXXXXXXXXXXXXXXX 153
L+GP G GP G G G G P GF G+
Sbjct: 874 LQGPPGFSGPKGPPGPQGKDGVPGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLG 933
Query: 154 APGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDG 333
G G PG GE+GLPG+ G G
Sbjct: 934 ERGPPGPPGPPGEQGLPGLEGREGAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGDPGPTG 993
Query: 334 NPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXX 513
G GPPG G G GER + G+ GE
Sbjct: 994 LKGDKGPPGPVGANGSPGERGPVGPAGSIGLPGQSGGQGPVGPTGEKGSPGERGAPGPTG 1053
Query: 514 XXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ---------GLPGLAGHHG 666
G G GE GDKG G PG KG G + G+ GL GH G
Sbjct: 1054 KDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDKGDAGPPGPTGIRGLVGHPG 1113
Query: 667 DQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
DG G PG +GP G++
Sbjct: 1114 S---PGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQ 1151
Score = 62.4 bits (150), Expect = 9e-10
Identities = 70/283 (24%), Positives = 83/283 (29%), Gaps = 21/283 (7%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---------PGFAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
RGP G +G G+ G TG GP PGF GEK
Sbjct: 833 RGPPGARGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGK 892
Query: 157 PGFLGLPGSRGERGL------PGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG RGE G PG AG V
Sbjct: 893 DGVPGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGL 952
Query: 319 XXRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGE 489
R+G G GP G ++G G +G +G+ GE
Sbjct: 953 EGREGAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGDPGPTGLKGDKGPPGPVGANGSPGE 1012
Query: 490 XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG---PRGLPGLKGHNGLQGLPGLAGH 660
G GEKG PG++G P G G+ G GL G PG AG
Sbjct: 1013 RGPVGPAGSIGLPGQSGGQGPVGPTGEKGSPGERGAPGPTGKDGIPGPLGLPGPPGAAGP 1072
Query: 661 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G++ G G G GP GIR
Sbjct: 1073 SGEE---------GDKGEVGAPGHKGSKGDKGDAGPPGPTGIR 1106
Score = 61.6 bits (148), Expect = 2e-09
Identities = 67/272 (24%), Positives = 74/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G G+ G G PG G K G G PG
Sbjct: 1063 LPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDK---------------------GDAGPPG 1101
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G RGL G GS G PG G G
Sbjct: 1102 PTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQGMPGPAGEKG 1161
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G G + G GE
Sbjct: 1162 EVGDVGSMGPHGAPGPRGPQGPSGSEGPPGLPGGVGQPGAVGEKGEPGEPGDPGPPGTPG 1221
Query: 541 XXXXQGIRGEKGE---------PGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
+G GEKG+ PG KGP G G KG+ G GLPG G GD
Sbjct: 1222 TPGPRGEVGEKGDTGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDLGPPGDPGVSGQDG 1281
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G +G+PGA GP G R
Sbjct: 1282 PPGEKGNPGDVGGPGPPGASGEPGAPGPPGKR 1313
Score = 52.8 bits (125), Expect = 7e-07
Identities = 53/212 (25%), Positives = 61/212 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G G GP GRTG GA GPPG G + PG LG PG
Sbjct: 1331 KGEPGPDGPPGRTGPVGARGPPGRVGPE------GLRGIPGPVGEPGLLGPPGLLGPPGP 1384
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G GLPG+ G G G GPPG
Sbjct: 1385 LGPSGLPGLKGDAGPKGEKGHI---------------------------GLIGLVGPPGE 1417
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G +G G +GE
Sbjct: 1418 VGEKGDQG---------------------LPGVQGSPGLQGEPGSPGPIGSLGHPGPQGV 1456
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 639
G +G KG PG +GPRG G G G G
Sbjct: 1457 VGPPGQKGSKGSPGSQGPRGDAGPPGPPGPPG 1488
>ref|XP_002691766.1| PREDICTED: collagen alpha-1(V) chain-like [Bos taurus].
Length = 990
Score = 123 bits (308), Expect = 4e-28
Identities = 107/395 (27%), Positives = 135/395 (34%), Gaps = 9/395 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G GP GR GE GA G G G G G+PG
Sbjct: 544 RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPD------GLRGIPGP 597
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
GE+GLPG G DG PG GPPG
Sbjct: 598 VGEQGLPGAPGP------------------------------------DGPPGPMGPPGL 621
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G G + G +G
Sbjct: 622 PGLKGDSGPK---------------------------GEKGHPGLI-------------- 640
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G GE G+KG RG+PG +G +G QG+ G +G G
Sbjct: 641 ----GLIGPPGEQGEKGDRGVPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGA 696
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGD 894
G GQPG GP G EG+
Sbjct: 697 KGSSGPTGPKGEAGQPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQLMDDA-----EGE 751
Query: 895 FYRADQPRSPPSLRPKDY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSH 1059
Y DY E+ +L SL +IE + P G+ +NPARTC+DL+L H
Sbjct: 752 QYM-------------DYADGMEEIFGSLNSLKLEIEQMKRPLGTPQNPARTCKDLQLCH 798
Query: 1060 PEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
P++ G YW+DPNQGC+ D+ KVYC+F+ G TC+
Sbjct: 799 PDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCV 833
>ref|XP_002688885.1| PREDICTED: collagen, type V, alpha 3 [Bos taurus].
Length = 1745
Score = 123 bits (308), Expect = 4e-28
Identities = 105/399 (26%), Positives = 133/399 (33%), Gaps = 14/399 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG+ G G TG +GA+GPPG G PG G G
Sbjct: 1224 GPRGEVGEKGDTGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDLGPPGDPGVSGQDGPP 1283
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G PG G G PG DGPPGR
Sbjct: 1284 GEKGNPGDVGGPGPPGASGEPGAPGPPGKRGPSGRMGQEGREGEKGAKGEPGPDGPPGRT 1343
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXX---KHGNRGEXXXXXXXXXXXXXXXX 537
G G +G G G
Sbjct: 1344 GPVGARGPPGRVGPEGLRGIPGPVGEPGLLGPPGLLGPPGPLGPSGLPGLKGDAGPKGEK 1403
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAG------HHGDQXXXXXXXXX 699
G+ G GE G+KG +GLPG++G GLQG PG G H G Q
Sbjct: 1404 GHIGLIGLVGPPGEVGEKGDQGLPGVQGSPGLQGEPGSPGPIGSLGHPGPQGVVGPPGQK 1463
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPA----GIRXXXXXXXXXXXXXXXXXXXXXXXXXX 867
G G PG GP+ G+R
Sbjct: 1464 GSKGSPGSQGPRGDAGPPGPPGPPGPSAELHGLRRRRRSLLGLGTP-------------- 1509
Query: 868 XYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ G E EV A++ SL+ ++E L P G+ + P C++L
Sbjct: 1510 --EGGLE--------------------EVLASMASLSFELEQLRRPPGTAERPGLVCKEL 1547
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
SHP G YWIDPNQGC DA++V+C+F+ GETC+
Sbjct: 1548 HRSHPHLPDGEYWIDPNQGCARDALRVFCNFTAGGETCL 1586
Score = 72.8 bits (177), Expect = 7e-13
Identities = 65/265 (24%), Positives = 83/265 (31%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +GD GP+G G+ G GP GF G PG +G GS
Sbjct: 957 GAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGDPGPTGLKGDKGP------PGPVGANGSP 1010
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG G AGS+ G G GPPG
Sbjct: 1011 GERGPVGPAGSIGLPGQSGGQGPVGPTGEKGSPGERGAPGPTGKDGIPGPLGLPGPPGAA 1070
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G +G +G++ G++G+
Sbjct: 1071 GPSGEEGDKGEVGAPGHKG---------------SKGDKGDAGPPGPTGIRGLVGHPGSP 1115
Query: 547 XXQGIRGEKGEPG------DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G +G +G PG D G RG PG+ G GLQG+PG AG G+
Sbjct: 1116 GADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQGMPGPAGEKGEVGDVGSMGPHGAP 1175
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
+G G PG VG G
Sbjct: 1176 GPRGPQGPSGSEGPPGLPGGVGQPG 1200
Score = 71.6 bits (174), Expect = 1e-12
Identities = 68/261 (26%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GP G G GR G G G PG GE G +G G
Sbjct: 478 MKGPPGPVGLTGRPGPVGLPGYPGLKGE---MGEMGPQGPRGLQGPHGPPGREGKMGRAG 534
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G RGLPG G DG G++GPPG
Sbjct: 535 ADGARGLPGATG---PKGDRGFDGLPGLPGEKGQRGDFGYVGKPGPPGEDGRKGAEGPPG 591
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
GQAG G R GN G
Sbjct: 592 PTGQAGEPGPRGLIGPRGSPGPLGRPGVIGSDGAPGAKGNVG------------PPGEPG 639
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QG G +G PG +GP G PG KG G G+PGL G G
Sbjct: 640 PPGQQGNPGSQGIPGPQGPIGTPGEKGPPGNPGIPGLPGSEG------------------ 681
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+G TG+ GA GPAG
Sbjct: 682 PPGHPGHEGPTGEKGAQGPAG 702
Score = 70.1 bits (170), Expect = 4e-12
Identities = 62/261 (23%), Positives = 77/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP+GR G G+ G PG G G +G PG
Sbjct: 604 LIGPRGSPGPLGRPGVIGSDGAPGAKGNVGPPGEPGPPGQQGNPGSQGIPGPQGPIGTPG 663
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G G PG+ G PGS+GPPG
Sbjct: 664 EKGPPGNPGIPGL---------------------------------------PGSEGPPG 684
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE+ G +GE
Sbjct: 685 HPGHEGPTGEKGAQGPAGSAGPPGYPGPRGVKGTSGNRGLQGE------KGEKGEDGFPG 738
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G++G++G+PG GPR G G GL+G GL G G
Sbjct: 739 FKGDAGLKGDRGQPGPPGPR---GEDGPEGLKGQEGLLGEEGPPGSAGEKGKLGVPGLPG 795
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
G G PG +GP G
Sbjct: 796 YPGRPGPKGSIGFPGPLGPLG 816
Score = 70.1 bits (170), Expect = 4e-12
Identities = 66/264 (25%), Positives = 79/264 (29%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGA---SGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
GPRG+ GP G G+ G GPPG AGEK PG+ G P
Sbjct: 756 GPRGEDGPEGLKGQEGLLGEEGPPGSAGEK---------------GKLGVPGLPGYPGRP 800
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G +G G PG G + G PG G
Sbjct: 801 GPKGSIGFPGPLGPL---GEKGKRGKAGQPGLEGERGPPGARGERGQPGATGQPGPKGDV 857
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+DG G GE+ G+ G+
Sbjct: 858 GQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGVPGHPGQRGELGFQGQTGPPGPA 917
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
QG GE G G++GP G PG G GL GL G G GD
Sbjct: 918 GVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGLEGREGAKGDVGPLGPLGKEGPPGPR 977
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G PG GP G++
Sbjct: 978 GF------PGPHGAPGDPGPTGLK 995
Score = 70.1 bits (170), Expect = 4e-12
Identities = 66/270 (24%), Positives = 76/270 (28%), Gaps = 9/270 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASG------PPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFL 168
GP G +G VG G GA G PPG G+K PG
Sbjct: 1101 GPTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGP---------PGLQ 1151
Query: 169 GLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSD 348
G+PG GE+G G GS+ G PG
Sbjct: 1152 GMPGPAGEKGEVGDVGSMGPHGAPGPRGPQGPSGSEGPPGLPGGVGQPGAVGEKGEPGEP 1211
Query: 349 GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
G PG G G G R + G +G
Sbjct: 1212 GDPGPPGTPGTPGPRGEVGEKGDTGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDLGPP 1271
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL---AGHHGDQXXXXXXXXX 699
G GEKG PGD G G PG G G G PG +G G +
Sbjct: 1272 GDPGVSGQDGPPGEKGNPGDVGGPGPPGASGEPGAPGPPGKRGPSGRMGQEGREGEKGAK 1331
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G PG VGP G+R
Sbjct: 1332 GEPGPDGPPGRTGPVGARGPPGRVGPEGLR 1361
Score = 68.9 bits (167), Expect = 1e-11
Identities = 69/271 (25%), Positives = 78/271 (28%), Gaps = 12/271 (4%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGA------SGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFL 168
GP G G G TGE GA +GPPG+ G + PGF
Sbjct: 681 GPPGHPGHEGPTGEKGAQGPAGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFK 740
Query: 169 GLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSD 348
G G +G+RG PG G G PG
Sbjct: 741 GDAGLKGDRGQPGPPGPRGEDGPEGLKGQEGLLGEEGPPGSAGEKGKLGVPGLPGYPGRP 800
Query: 349 GP------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
GP PG G G KG+R G RGE
Sbjct: 801 GPKGSIGFPGPLGPLGEKGKRGKAGQPGLEGERGPP------------GARGERGQPGAT 848
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
G GEKG PG +GP G G KG G QG G+ GH G +
Sbjct: 849 GQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGKDGVPGHPGQRGELGFQ 908
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G G GP G
Sbjct: 909 GQTGPPGPAGVVGPQGKTGEAGPLGERGPPG 939
Score = 62.8 bits (151), Expect = 7e-10
Identities = 62/260 (23%), Positives = 73/260 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G +G GPPGF G++ PG GLPG
Sbjct: 393 GPPGAPGPQGVVGPSGPPGPPGFPGDR---------------------GLPGPAGLPGIP 431
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G+ G+ G+V G PG G GR
Sbjct: 432 GMDGIRGLPGTVIMMPFQFARGSHKGPPVSFQQAQAQAVLQQAQLSMKGPPGPVGLTGRP 491
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G +GE
Sbjct: 492 GPVGLPG---------------------------YPGLKGEMGEMGPQGPRGLQGPHGPP 524
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G G G +G G G KG G GLPGL G G +
Sbjct: 525 GREGKMGRAGADGARGLPGATGPKGDRGFDGLPGLPGEKGQRGDFGYVGKPGPPGEDGRK 584
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G TGQ G GP G+
Sbjct: 585 GAEGPPGPTGQAGEPGPRGL 604
Score = 62.8 bits (151), Expect = 7e-10
Identities = 67/281 (23%), Positives = 78/281 (27%), Gaps = 18/281 (6%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPP---------GFAGEKXXXXXXXXXXXXXXXXXXXXXX 153
L+GP G GP G G G G P GF G+
Sbjct: 874 LQGPPGFSGPKGPPGPQGKDGVPGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLG 933
Query: 154 APGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDG 333
G G PG GE+GLPG+ G G
Sbjct: 934 ERGPPGPPGPPGEQGLPGLEGREGAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGDPGPTG 993
Query: 334 NPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXX 513
G GPPG G G GER + G+ GE
Sbjct: 994 LKGDKGPPGPVGANGSPGERGPVGPAGSIGLPGQSGGQGPVGPTGEKGSPGERGAPGPTG 1053
Query: 514 XXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQ---------GLPGLAGHHG 666
G G GE GDKG G PG KG G + G+ GL GH G
Sbjct: 1054 KDGIPGPLGLPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDKGDAGPPGPTGIRGLVGHPG 1113
Query: 667 DQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
DG G PG +GP G++
Sbjct: 1114 S---PGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQ 1151
Score = 62.4 bits (150), Expect = 9e-10
Identities = 70/283 (24%), Positives = 83/283 (29%), Gaps = 21/283 (7%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP---------PGFAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
RGP G +G G+ G TG GP PGF GEK
Sbjct: 833 RGPPGARGERGQPGATGQPGPKGDVGQDGAPGFPGEKGLPGLQGPPGFSGPKGPPGPQGK 892
Query: 157 PGFLGLPGSRGERGL------PGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG RGE G PG AG V
Sbjct: 893 DGVPGHPGQRGELGFQGQTGPPGPAGVVGPQGKTGEAGPLGERGPPGPPGPPGEQGLPGL 952
Query: 319 XXRDGNPGSDGPPG---RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGE 489
R+G G GP G ++G G +G +G+ GE
Sbjct: 953 EGREGAKGDVGPLGPLGKEGPPGPRGFPGPHGAPGDPGPTGLKGDKGPPGPVGANGSPGE 1012
Query: 490 XXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKG---PRGLPGLKGHNGLQGLPGLAGH 660
G GEKG PG++G P G G+ G GL G PG AG
Sbjct: 1013 RGPVGPAGSIGLPGQSGGQGPVGPTGEKGSPGERGAPGPTGKDGIPGPLGLPGPPGAAGP 1072
Query: 661 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G++ G G G GP GIR
Sbjct: 1073 SGEE---------GDKGEVGAPGHKGSKGDKGDAGPPGPTGIR 1106
Score = 61.6 bits (148), Expect = 2e-09
Identities = 67/272 (24%), Positives = 74/272 (27%), Gaps = 9/272 (3%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G G+ G G PG G K G G PG
Sbjct: 1063 LPGPPGAAGPSGEEGDKGEVGAPGHKGSKGDK---------------------GDAGPPG 1101
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G RGL G GS G PG G G
Sbjct: 1102 PTGIRGLVGHPGSPGADGAQGRRGPPGLFGQKGDDGVRGFPGMIGPPGLQGMPGPAGEKG 1161
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G G + G GE
Sbjct: 1162 EVGDVGSMGPHGAPGPRGPQGPSGSEGPPGLPGGVGQPGAVGEKGEPGEPGDPGPPGTPG 1221
Query: 541 XXXXQGIRGEKGE---------PGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
+G GEKG+ PG KGP G G KG+ G GLPG G GD
Sbjct: 1222 TPGPRGEVGEKGDTGPSGAAGPPGKKGPPGEDGAKGNVGPTGLPGDLGPPGDPGVSGQDG 1281
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G +G+PGA GP G R
Sbjct: 1282 PPGEKGNPGDVGGPGPPGASGEPGAPGPPGKR 1313
Score = 52.8 bits (125), Expect = 7e-07
Identities = 53/212 (25%), Positives = 61/212 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G G GP GRTG GA GPPG G + PG LG PG
Sbjct: 1331 KGEPGPDGPPGRTGPVGARGPPGRVGPE------GLRGIPGPVGEPGLLGPPGLLGPPGP 1384
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G GLPG+ G G G GPPG
Sbjct: 1385 LGPSGLPGLKGDAGPKGEKGHI---------------------------GLIGLVGPPGE 1417
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G +G G +GE
Sbjct: 1418 VGEKGDQG---------------------LPGVQGSPGLQGEPGSPGPIGSLGHPGPQGV 1456
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 639
G +G KG PG +GPRG G G G G
Sbjct: 1457 VGPPGQKGSKGSPGSQGPRGDAGPPGPPGPPG 1488
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,026,521
Number of extensions: 771307
Number of successful extensions: 26064
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 10981
Number of HSP's successfully gapped: 478
Length of query: 447
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 342
Effective length of database: 14,207,134
Effective search space: 4858839828
Effective search space used: 4858839828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012839
(1343 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230584.1| collagen, type I, alpha 2 [Sus scrofa]. 466 e-142
Alignment gi|XP_003361043.1| PREDICTED: collagen alpha-1(II) chain-like, ... 199 3e-58
Alignment gi|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa]. 199 1e-55
Alignment gi|XP_003362102.1| PREDICTED: LOW QUALITY PROTEIN: collagen alp... 207 8e-54
Alignment gi|NP_001098759.1| collagen alpha-2(V) chain [Sus scrofa]. 201 6e-52
Alignment gi|XP_003355328.1| PREDICTED: collagen alpha-1(XI) chain isofor... 139 5e-33
Alignment gi|XP_003355327.1| PREDICTED: collagen alpha-1(XI) chain isofor... 139 5e-33
Alignment gi|XP_003355326.1| PREDICTED: collagen alpha-1(XI) chain isofor... 139 5e-33
Alignment gi|XP_001929407.3| PREDICTED: collagen alpha-1(XI) chain isofor... 139 5e-33
Alignment gi|XP_003128380.1| PREDICTED: collagen alpha-2(XI) chain-like i... 127 1e-29
>ref|NP_001230584.1| collagen, type I, alpha 2 [Sus scrofa].
Length = 1366
Score = 466 bits (1199), Expect(2) = e-142
Identities = 244/397 (61%), Positives = 244/397 (61%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRGPRGDQGPVGRTGETGASGPPGFAGEK APGFLGLPG
Sbjct: 818 LRGPRGDQGPVGRTGETGASGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGFLGLPG 877
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
SRGERGLPGVAGSV RDGNPGSDGPPG
Sbjct: 878 SRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGNPGVNGAPGEAGRDGNPGSDGPPG 937
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDGQAGHKGER KHGNRGE
Sbjct: 938 RDGQAGHKGERGYPGNPGPAGAAGAPGPQGAVGPAGKHGNRGEPGPAGSVGPAGAVGPRG 997
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQ
Sbjct: 998 PSGPQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGPVGPAGPRGPAG 1057
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFY 900
KDGRTGQPGAVGPAGIR YDFGYEGDFY
Sbjct: 1058 PSGPAGKDGRTGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFY 1117
Query: 901 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1080
RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY
Sbjct: 1118 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1177
Query: 1081 YWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
YWIDPNQGCTMDAIKVYCDFSTGETCIRA P NIPAK
Sbjct: 1178 YWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAK 1214
Score = 58.9 bits (141), Expect(2) = e-142
Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 1182 PSKNWYRNSKVKKHVWVXETIHGGTHLKYIWKELPQGNGYT-TCFMRLLA 1328
P+KNWYRNSKVKKHVW+ ETI+GGT +Y + + T FMRLLA
Sbjct: 1212 PAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLA 1261
Score = 77.0 bits (188), Expect = 2e-14
Identities = 69/259 (26%), Positives = 83/259 (32%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G+ GPVG G G +GP G G PG GLPG++
Sbjct: 262 GPKGELGPVGNPGPAGPAGPRGEVG------------LPGVSGPVGPPGNPGANGLPGAK 309
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G GLPGVAG+ G PG G PG
Sbjct: 310 GAAGLPGVAGA------------------------------------PGLPGPRGIPGPA 333
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G R G++GE
Sbjct: 334 GAAGATGARGLVGEPGPA------------------GSKGESGNKGEPGAAGPQGPPGPS 375
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG GE G GP G PGL+G+ G +GLPG G G
Sbjct: 376 GEEGKRGPNGEVGSAGPPGPPGLRGNPGSRGLPGADGRAG---VMGPPGSRGPTGPAGVR 432
Query: 727 XXXXKDGRTGQPGAVGPAG 783
GR G+PG +GP G
Sbjct: 433 GPNGDSGRPGEPGLMGPRG 451
Score = 64.7 bits (156), Expect = 1e-10
Identities = 68/276 (24%), Positives = 74/276 (26%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G VG G G GP G GE PG G PG
Sbjct: 95 LMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPG 154
Query: 181 SR------GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG 342
R G RG PG G G G
Sbjct: 155 ERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTG 214
Query: 343 SDGPP---GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXX 513
+ G P GR G G G R G +GE
Sbjct: 215 ARGLPGERGRVGAPGPAGARGNDGSVGPVDPAGPIGSAGPPGFPGAPGPKGELGPVGNPG 274
Query: 514 XXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL------QGLPGLAGHHGDQX 675
G+ G G PG+ G GLPG KG GL GLPG G G
Sbjct: 275 PAGPAGPRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPAG 334
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ G G+PGA GP G
Sbjct: 335 AAGATGARGLVGEPGPAGSKGESGNKGEPGAAGPQG 370
Score = 63.9 bits (154), Expect = 2e-10
Identities = 67/277 (24%), Positives = 76/277 (27%), Gaps = 18/277 (6%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGF---------AGEKXXXXXXXXXXXXXXXXXXXXXXAP 159
G RG G GR GE G GP GF AG++ P
Sbjct: 430 GVRGPNGDSGRPGEPGLMGPRGFPGSPGNVGPAGKEGPAGLPGIDGRPGPIGPAGARGEP 489
Query: 160 GFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP 339
G +G PG +G G PG G DGN
Sbjct: 490 GNIGFPGPKGPTGDPGKNGEKGHAGLAGARGAPGP---------------------DGNN 528
Query: 340 GSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXX 519
G+ GPPG G G KGE+ + G GE
Sbjct: 529 GAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPGEFGLPGPAGPR 588
Query: 520 XXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP---------GLAGHHGDQ 672
G G G G GP G G KG G+ G P GL G G
Sbjct: 589 GERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAA 648
Query: 673 XXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+DG G PGAVG G
Sbjct: 649 GIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPG 685
Score = 62.8 bits (151), Expect = 4e-10
Identities = 69/269 (25%), Positives = 78/269 (28%), Gaps = 9/269 (3%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP G QG G GE G +GPPGF G PG GLPG
Sbjct: 531 QGPPGPQGVQGGKGEQGPAGPPGFQG------LPGPAGTAGEVGKPGERGIPGEFGLPGP 584
Query: 184 ---RGERGLPGV------AGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
RGERG PG AG + G
Sbjct: 585 AGPRGERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGE 644
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G+ G PG G+ G G R +G+RGE
Sbjct: 645 RGAAGIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGP 704
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G RG GE G+ GP G G G G G PG G G +
Sbjct: 705 A------------GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGP 752
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G TG GA GPAG
Sbjct: 753 V---------------GPTGPVGAAGPAG 766
Score = 60.5 bits (145), Expect = 2e-09
Identities = 66/262 (25%), Positives = 74/262 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG RG GP GR G+ G GPPG G PG +GL G
Sbjct: 41 RGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGA--GPGPMGLMGP 98
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RG G G G G G GPPG+
Sbjct: 99 RGPPGAVGAPGPQGFQGPAGEPGEPGQTGPA------------------GARGPPGPPGK 140
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ GH G K G GE
Sbjct: 141 AGEDGHPG---------------------------KPGRPGERGVVGPQGARGFPGTPGL 173
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+GIRG G G KG G PG+KG G G G G G +
Sbjct: 174 PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGL--------------- 218
Query: 724 XXXXXKDGRTGQPGAVGPAGIR 789
G G+ GA GPAG R
Sbjct: 219 ------PGERGRVGAPGPAGAR 234
Score = 60.1 bits (144), Expect = 3e-09
Identities = 66/269 (24%), Positives = 78/269 (28%), Gaps = 9/269 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGP---------PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP 159
GP+G QGP G GE G +GP PG AGE P
Sbjct: 109 GPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFP 168
Query: 160 GFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP 339
G GLPG +G RG G+ G G P
Sbjct: 169 GTPGLPGFKGIRGHNGLDG------------------------LKGQPGAPGVKGEPGAP 204
Query: 340 GSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXX 519
G +G PG+ G G GER GN G
Sbjct: 205 GENGTPGQTGARGLPGERGRVGAPGPAGA---------------RGNDGSVGPVDPAGPI 249
Query: 520 XXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXX 699
G +GE G G+ GP G G +G GL G+ G G G+
Sbjct: 250 GSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGVSGPVGPPGNP--------- 300
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
G G PGA G AG+
Sbjct: 301 ---------------GANGLPGAKGAAGL 314
Score = 51.6 bits (122), Expect = 1e-06
Identities = 61/262 (23%), Positives = 69/262 (26%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRG G G G G GA G PG AG +PG G G
Sbjct: 662 LRGDVGSPGRDGARGAPGAVGAPGPAGAN---GDRGEAGPAGPAGPAGPRGSPGERGEVG 718
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G G AG+ +G PG G G
Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPAGPNGPPGPAGSRG 778
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G G K G RG
Sbjct: 779 DGGPPGATGFPGAAGRIGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGETGASG 838
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G GEPG GP G PG +G G G GL G G++
Sbjct: 839 PPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGFLGLPGSRGER---GLPGVAGSVGEPG 895
Query: 721 XXXXXXKDGRTGQPGAVGPAGI 786
G G PGAVG G+
Sbjct: 896 PLGIAGPPGARGPPGAVGNPGV 917
>ref|XP_003361043.1| PREDICTED: collagen alpha-1(II) chain-like, partial [Sus scrofa].
Length = 1540
Score = 199 bits (507), Expect(2) = 3e-58
Identities = 135/408 (33%), Positives = 162/408 (39%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR G+ G GP G GEK G +GLPG
Sbjct: 983 KGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGEDGPSGPDGPPGPQGLAGQRGIVGLPGQ 1042
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G G+PG+DGPPGR
Sbjct: 1043 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTXXAPFPFAQGSPGADGPPGR 1102
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RG
Sbjct: 1103 DGAAGVKGDRGETGAAGAPGAPGPPGSPGPAGPTGKQGDRGPQGAQGPMGPAGPAGARGM 1162
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1163 PGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1222
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG------- 882
KDG G PG +GP G R D
Sbjct: 1223 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGTPGPPGPPGPPGPGIDMSAFAGXXX 1282
Query: 883 -----YEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ + RAD+ + +LR D EVDATLKS + +PEGSRKNPARTCRD+
Sbjct: 1283 XXXGPHPLQYMRADE--AAGNLRQHDAEVDATLKSXXXXXXXIRSPEGSRKNPARTCRDM 1340
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
P +G YWIDPNQGCT+DA+KV+C+ P ++P K
Sbjct: 1341 GCCLPP-PAGDYWIDPNQGCTLDAMKVFCNMXXXXXXXXXSPASVPKK 1387
Score = 44.7 bits (104), Expect(2) = 3e-58
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ETI+GG H Y L P F+RLL+T
Sbjct: 1385 PKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLST 1436
Score = 82.8 bits (203), Expect = 4e-16
Identities = 69/265 (26%), Positives = 82/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG +GE+ G+ GL G++
Sbjct: 323 GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 382
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 383 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 442
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + GN G
Sbjct: 443 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAK 502
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG G+Q
Sbjct: 503 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ---------GPK 553
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG GPAG
Sbjct: 554 GEPGPAGEEGKRGARGEPGGAGPAG 578
Score = 69.3 bits (168), Expect = 5e-12
Identities = 64/261 (24%), Positives = 79/261 (30%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QGP G G G+ GP G +G PG G+PG+
Sbjct: 466 RGPEGAQGPRGEPGNPGSPGPAGASGN------------------------PGTDGIPGA 501
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ G PG GPPG
Sbjct: 502 KGSAGAPGIAGA------------------------------------PGFPGPRGPPGP 525
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G G + G GE
Sbjct: 526 QGATGPLGPK---------------------------GQTGEPGIAGFKGEQGPKGEPGP 558
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+G RG +GEPG GP G PG +G G +G PG G G +
Sbjct: 559 AGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPK--VSGGTGPGVSPCITS 616
Query: 724 XXXXXKDGRTGQPGAVGPAGI 786
GR G+PG G G+
Sbjct: 617 QMASADPGRPGEPGLPGARGL 637
Score = 69.3 bits (168), Expect = 5e-12
Identities = 69/270 (25%), Positives = 83/270 (30%), Gaps = 11/270 (4%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G GPPG G + PG +G PG +
Sbjct: 645 GPQGKVGPSGAPGEDGRPGPPGPQGARGQ---------------------PGVMGFPGPK 683
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG G PG G PG+D
Sbjct: 684 GANGEPGKAGEKGLP---------------------------------GAPGLRGLPGKD 710
Query: 367 GQA--------GHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXX 522
G+ G GER K G++G
Sbjct: 711 GETXXXXXXXXGPAGERGEQGAPGPSGFQGLPGPPGAPGEGGKPGDQGVPGEAGAPGLXG 770
Query: 523 XXXXXXXXXXQGIRGEKGEPGD---KGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXX 693
+G GE+G PG +GPRGLPG G +G +G G AG G
Sbjct: 771 APGLVGPRGERGFPGERGSPGSQGLQGPRGLPGTPGTDGPKGASGPAGPPGGD------- 823
Query: 694 XXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
KDG G G +GP G
Sbjct: 824 ----VGEKGPEGAPGKDGGRGLTGPIGPPG 849
Score = 63.9 bits (154), Expect = 2e-10
Identities = 66/269 (24%), Positives = 76/269 (28%), Gaps = 16/269 (5%)
Frame = +1
Query: 25 GPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG---SRGER 195
GP G GE GA GP GF G APG G PG RGER
Sbjct: 722 GPAGERGEQGAPGPSGFQGLPGPPGAPGEGGKPGDQGVPGEAGAPGLXGAPGLVGPRGER 781
Query: 196 GLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------RDGNPGS 345
G PG GS +DG G
Sbjct: 782 GFPGERGSPGSQGLQGPRGLPGTPGTDGPKGASGPAGPPGGDVGEKGPEGAPGKDGGRGL 841
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
GP G G AG GE+ G GE
Sbjct: 842 TGPIGPPGPAGANGEK------------GEVGPPGPAGTAGARGAPGERGETGPPGPAGF 889
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QGLPGLAGHHGDQXXXXXXXX 696
G +GE+GE G KG G PG +G +G QG G+ G G +
Sbjct: 890 AGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGA 949
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+G G PG GP+G
Sbjct: 950 TGFPGAAGRVGPPGSNGNPGPPGPPGPSG 978
Score = 61.6 bits (148), Expect = 1e-09
Identities = 65/266 (24%), Positives = 73/266 (27%), Gaps = 6/266 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+QG G +G G GPPG GE PG G+PG
Sbjct: 725 GERGEQGAPGPSGFQGLPGPPGAPGE---------------------GGKPGDQGVPGEA 763
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G GL G G V G PG+DGP G
Sbjct: 764 GAPGLXGAPGLVGPRGERGFPGERGSPGSQGLQGPRGL---------PGTPGTDGPKGAS 814
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G G +G
Sbjct: 815 GPAGPPG--------------------------GDVGEKGPEGAPGKDGGRGLTGPIGPP 848
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G GEKGE G GP RG PG +G G G G AG G
Sbjct: 849 GPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 908
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAGI 786
G +G PG GP G+
Sbjct: 909 GQKGDAGAPGPQGPSGAPGPQGPTGV 934
Score = 60.8 bits (146), Expect = 2e-09
Identities = 66/273 (24%), Positives = 79/273 (28%), Gaps = 12/273 (4%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP+G+ GP G G+ GA G PG AG PG G PG+
Sbjct: 550 QGPKGEPGPAGEEGKRGARGEPGGAGPAGP---------------------PGERGAPGN 588
Query: 184 RGERGLPGVAG-SVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
RG G G+AG V G PG GP G
Sbjct: 589 RGFPGQDGLAGPKVSGGTGPGVSPCITSQMASADPGRPGEPGLPGARGLTGRPGDAGPQG 648
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G +G GE G RG+
Sbjct: 649 KVGPSGAPGE------------------DGRPGPPGPQGARGQ---------------PG 675
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG-----------LPGLAGHHGDQXXXXX 687
G +G GEPG G +GLPG G GL G G AG G+Q
Sbjct: 676 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETXXXXXXXXGPAGERGEQGAPGP 735
Query: 688 XXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
K G G PG G G+
Sbjct: 736 SGFQGLPGPPGAPGEGGKPGDQGVPGEAGAPGL 768
Score = 55.1 bits (131), Expect = 9e-08
Identities = 62/260 (23%), Positives = 70/260 (26%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G G G GEK APG G G
Sbjct: 196 GPKGPPGPQGPAGEQGPRGDRGDKGEKG---------------------APGPRGRDGEP 234
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G G GPPG
Sbjct: 235 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPA 294
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G + G RG
Sbjct: 295 GAPGPQGFQVEGPEETQTSPLSSGRGPM--------GPRGPPGPPGKP------------ 334
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GE G+PG G RG PG +G G G PGL G G +
Sbjct: 335 ---GDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK 391
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G G PG +GP G+
Sbjct: 392 GESGSPGENGSPGPMGPRGL 411
>ref|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa].
Length = 1466
Score = 199 bits (507), Expect(2) = 1e-55
Identities = 135/410 (32%), Positives = 160/410 (39%), Gaps = 15/410 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G G GPPG G A G G PG
Sbjct: 922 GPKGDAGQPGEKGSPGPQGPPGAPGP---------------GGISGITGARGLAGPPGMP 966
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 967 GARGSPGPQGVKGENGKPGPSGLNGERGPPGPQGLPGLAGAAGEPGRDGNPGSDGLPGRD 1026
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K+G+RGE
Sbjct: 1027 GAPGSKGDRGENGSPGAPGAPGHPGPPGPVGPAGKNGDRGETGPAGPAGAPGPAGSRGAP 1086
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1087 GPQGPRGDKGETGERGANGIKGHRGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRGPVGPS 1146
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------Y 873
KDG +G PG +GP G R
Sbjct: 1147 GPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAAIA 1206
Query: 874 DFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCR 1041
G E G F Y D+P + E+ +LKS+N QIE+L++P+GSRKNPAR CR
Sbjct: 1207 GVGGEKAGGFAPYYGDEPMD---FKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCR 1263
Query: 1042 DLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
DL+ HPE SG YW+DPNQGC MDAIKV+C+ TGETCI A P +P K
Sbjct: 1264 DLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCISASPSTVPRK 1313
Score = 36.2 bits (82), Expect(2) = 1e-55
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P KNW+ +S KK+VW E+++GG Y ELP+ F+RLL++
Sbjct: 1311 PRKNWWTDSGAEKKYVWFGESMNGGFQFSYGNPELPEDVLDVQLAFLRLLSS 1362
Score = 79.7 bits (195), Expect = 3e-15
Identities = 72/264 (27%), Positives = 80/264 (30%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G+ G G GE GA+G PG AGE+ APG GLPG +
Sbjct: 460 GPKGEDGKDGSPGEPGANGLPGAAGERGMPGFRG---------------APGANGLPGEK 504
Query: 187 G---ERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G ERG PG AG G PGSDG P
Sbjct: 505 GPAGERGGPGPAGP------------RGVAGEPGRDGVPGGPGLRGMPGSPGGPGSDGKP 552
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G G G G GE
Sbjct: 553 GPPGSQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPPGKN 612
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
QG G G GDKG G PG +G GL G G G +G
Sbjct: 613 GETGPQGPPGPTGPGGDKGDTGPPGQQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIP 672
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G PGAVGP+G R
Sbjct: 673 GGKGDSGAPGERGPPGAVGPSGPR 696
Score = 68.2 bits (165), Expect = 1e-11
Identities = 65/268 (24%), Positives = 77/268 (28%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G G G +GPPG G PG G+PG R
Sbjct: 694 GPRGGAGPPGPEGGKGPAGPPGPPGAAG---------------------TPGLQGMPGER 732
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G G+ G PG
Sbjct: 733 GGSGGPGPKGDKGDPGGSGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGLPGIA 792
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG---NRGEXXXXXXXXXXXXXXXX 537
G G GER + G +GE
Sbjct: 793 GPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGIAGQPGGTGPP 852
Query: 538 XXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXX 699
QG++GE+G PG G RGLPG G NG G PG +G G
Sbjct: 853 GPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGSNGNPGPPGSSGPPGKDGPPGPPGSS 912
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G+ G+ G+ GP G
Sbjct: 913 GAPGSPGVSGPKGDAGQPGEKGSPGPQG 940
Score = 67.4 bits (163), Expect = 2e-11
Identities = 63/259 (24%), Positives = 77/259 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG +PG G PG R
Sbjct: 319 GARGNDGARGSDGQPGPPGPPGTAG---------FPGSPGAKGEVGPAGSPGPSGSPGQR 369
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G AG+ G PG++G PG+
Sbjct: 370 GEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPGTNGAPGQR 429
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G+ + G RGE
Sbjct: 430 GAAGEPGKNGAKG---------------------EPGPRGERGEAGSPGIPGPKGEDGKD 468
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G G PG G RG+PG +G G GLPG G G++
Sbjct: 469 GSPGEPGANGLPGAAGERGMPGFRGAPGANGLPGEKGPAGERGGPGPAGPRGVAGEPGRD 528
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G PG+ G G
Sbjct: 529 GVPGGPGLRGMPGSPGGPG 547
Score = 65.9 bits (159), Expect = 5e-11
Identities = 66/272 (24%), Positives = 80/272 (29%), Gaps = 12/272 (4%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G GP G G G G PG GE +PG G PG
Sbjct: 327 RGSDGQPGPPGPPGTAGFPGSPGAKGE------------------VGPAGSPGPSGSPGQ 368
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGE G G AG+ G PG++G PG+
Sbjct: 369 RGEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPGTNGAPGQ 428
Query: 364 DGQAGH------------KGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXX 507
G AG +GER +G G
Sbjct: 429 RGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGM 488
Query: 508 XXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXX 687
+G GE+G PG GPRG+ G G +G+ G PGL G G
Sbjct: 489 PGFRGAPGANGLPGEKGPAGERGGPGPAGPRGVAGEPGRDGVPGGPGLRGMPGS------ 542
Query: 688 XXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ GR G PG+ GP G
Sbjct: 543 PGGPGSDGKPGPPGSQGESGRPGPPGSPGPRG 574
Score = 65.1 bits (157), Expect = 9e-11
Identities = 59/259 (22%), Positives = 75/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G G+ GA G PG GE+ PG GLPG+
Sbjct: 424 GAPGQRGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAA 483
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG+PG G+ PG++G PG
Sbjct: 484 GERGMPGFRGA---------------------------------------PGANGLPGEK 504
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +G G GE
Sbjct: 505 GPAGERG---------------------GPGPAGPRGVAGEPGRDGVPGGPGLRGMPGSP 543
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+ G PG +G G PG G G +G PG+ G G +
Sbjct: 544 GGPGSDGKPGPPGSQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 603
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G+ G+ G GP G
Sbjct: 604 GLPGPPGKNGETGPQGPPG 622
Score = 64.7 bits (156), Expect = 1e-10
Identities = 66/263 (25%), Positives = 74/263 (28%), Gaps = 3/263 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAG---EKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLP 177
GP G GP G +G GA G PG+ G E G G P
Sbjct: 178 GPPGPPGPPGVSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRP 237
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G GERGLPG G +G PG +G P
Sbjct: 238 GRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAP 297
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G G GER GN G
Sbjct: 298 GPMGPRGAPGERGRPGLPGAAGA---------------RGNDGARGSDGQPGPPGPPGTA 342
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G +GE G G GP G PG +G G QG G AG G
Sbjct: 343 GFPGSPGAKGEVGPAGSPGPSGSPGQRGEPGPQGHAGAAGPPGPPG-------------- 388
Query: 718 XXXXXXXKDGRTGQPGAVGPAGI 786
+G G G +GPAGI
Sbjct: 389 -------SNGSPGGKGEMGPAGI 404
Score = 64.7 bits (156), Expect = 1e-10
Identities = 63/262 (24%), Positives = 72/262 (27%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS- 183
G G GP G+ GETG GPPG G PG G PG
Sbjct: 601 GGPGLPGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGQQGLQGLPGTSGPPGENGKPGEP 660
Query: 184 --RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
+GE G PG+ G G PG+ GP
Sbjct: 661 GPKGEAGAPGIPGG---------------------------KGDSGAPGERGPPGAVGPS 693
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G + G G
Sbjct: 694 GPRGGAGPPGPEGGKGPAGPPGPPGAAGTPGLQGMPGERGGSGGPGPKGDKGDPGGSGAD 753
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G RG G G GP G PG KG +G GLPG+AG G
Sbjct: 754 GAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 813
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G+ GA G G
Sbjct: 814 GAPGQNGEPGAKGERGAPGEKG 835
Score = 63.9 bits (154), Expect = 2e-10
Identities = 67/271 (24%), Positives = 75/271 (27%), Gaps = 11/271 (4%)
Frame = +1
Query: 4 RGPRGDQGPVG---RTGETGASGPPGFAG--------EKXXXXXXXXXXXXXXXXXXXXX 150
+GP+GD GP G R G+ G G PG G E
Sbjct: 106 QGPKGDPGPPGIPGRNGDPGLPGQPGSPGSPGPPGICESCPTGGQNYSPQYESYDVKAGV 165
Query: 151 XAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD 330
G G PG G G PG G
Sbjct: 166 AGGGIGGYPGPAGPPGPPGPPG------------------------------VSGHPGAP 195
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G+PG GPPG GQAG G + G GE
Sbjct: 196 GSPGYQGPPGEPGQAGPAGP------PGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPP 249
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 250 GLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGER 309
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 310 GRPGLPGAAGARGNDGARGSDGQPGPPGPPG 340
>ref|XP_003362102.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(I) chain [Sus
scrofa].
Length = 1317
Score = 207 bits (528), Expect = 8e-54
Identities = 143/437 (32%), Positives = 175/437 (40%), Gaps = 32/437 (7%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GPRG+ GP GR GE G GPPG AGEK G +GLPG
Sbjct: 776 KGPRGETGPAGRPGEAGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 835
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G G PG GPPG
Sbjct: 836 RGERGFPGLPGP---------------------SGEPGKQGPSGPSGERGPPGPMGPPGL 874
Query: 364 DGQAGH-------------------------KGERXXXXXXXXXXXXXXXXXXXXXXXXX 468
G G +G+R
Sbjct: 875 AGPLGPHPPPVAPPGSFSYGXLNSGFPSLPTQGDRGESGPAGPPGAPGAPGAPGPVGPAG 934
Query: 469 KHGNRGEXXXXXXXXXXXXXXXXXXXXX-----QGIRGEKGEPGDKGPRGLPGLKGHNGL 633
K G+RGE QG RG+KGE G++G RG+ G +G +GL
Sbjct: 935 KSGDRGEXRLWLAGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL 994
Query: 634 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXX 813
QG PG G G+Q KDG G PG +GP G R
Sbjct: 995 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTG---- 1050
Query: 814 XXXXXXXXXXXXXXXXXXXYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIET 993
D G YRAD +R +D EVD TLKSL+ QIE
Sbjct: 1051 --------------------DAGPVXXXYRADDANV---VRDRDLEVDTTLKSLSQQIEN 1087
Query: 994 LLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP 1173
+ +PEGSRKNPARTCRDL++ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+
Sbjct: 1088 IRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQ 1147
Query: 1174 *NIPAKTG--TETPKSR 1218
++P K ++ PK +
Sbjct: 1148 PSVPQKNWYISKNPKDK 1164
Score = 67.0 bits (162), Expect = 2e-11
Identities = 65/267 (24%), Positives = 77/267 (28%), Gaps = 6/267 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD GP G G +G G G G+ PG G PG
Sbjct: 98 GPKGDTGPRGPRGPSGPPGRDGIPGQ------------------------PGLPGPPGPP 133
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG+ G+ G G GPPG
Sbjct: 134 GPPGPPGLGGNFAPQLSYGYDEKSAGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 193
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G G K+G+ GE
Sbjct: 194 GEPGASG---------------PMGPRGPPGPPGKNGDDGE------------------A 220
Query: 547 XXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G GE+G PG +G R GLPG+KGH G GL G G G
Sbjct: 221 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 280
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PG GPAG R
Sbjct: 281 GAPGQMGPRGLPGERGRPGPPGPAGAR 307
Score = 64.7 bits (156), Expect = 1e-10
Identities = 66/262 (25%), Positives = 74/262 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G G+ G +GP G AG A G G PG
Sbjct: 678 LTGPIGPPGPAGAPGDKGETGPSGPAGPTGGADGQPG--------------AKGDAGPPG 723
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G PG GSV GN G GPPG
Sbjct: 724 PAGPTGPPGPIGSVGAPGPKGSPRPVIGGRGSRGP---------------GNAGPPGPPG 768
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G KG R G GE
Sbjct: 769 PAGKEGSKGPRGETGPA---------------------GRPGEAGPPGPP---------- 797
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G GEKG PG GP G PG G G+ G G+ G G +
Sbjct: 798 -----GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG 852
Query: 721 XXXXXXKDGRTGQPGAVGPAGI 786
G G PG +GP G+
Sbjct: 853 KQGPSGPSGERGPPGPMGPPGL 874
Score = 63.9 bits (154), Expect = 2e-10
Identities = 62/266 (23%), Positives = 73/266 (27%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASG------PPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RGPRG GP GR G G G PPG G PG
Sbjct: 106 RGPRGPSGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSAGISVPGP 165
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
+G G RG G PG G ++G+ G
Sbjct: 166 MGPSGPRGLPGPPGAPGP------QGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGE 219
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
G PGR G+ G G + G+ G
Sbjct: 220 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 279
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
+G+ GE+G PG GP G G G G G PG G G
Sbjct: 280 NGAPGQMGPRGLPGERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE 339
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G+PG GPAG
Sbjct: 340 AGPQGARGSEGPQGVRGEPGPPGPAG 365
Score = 59.7 bits (143), Expect = 4e-09
Identities = 74/267 (27%), Positives = 81/267 (30%), Gaps = 7/267 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXX---APGFLGLP 177
GP G +G G GE G GPPG AG + APG G+P
Sbjct: 584 GPSGARGERGFPGERGVQGPPGPAGPRGANGXXXXXXXXGDAGAPGAPGSQGAPGLQGMP 643
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPP 357
G RG GLPG G G G GP
Sbjct: 644 GERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGETGPSGPA 703
Query: 358 ----GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
G DGQ G KG+ G G
Sbjct: 704 GPTGGADGQPGAKGDAGPPGPAGPTGPPGPIGSV---------GAPGPKGSPRPVIGGRG 754
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G G G+ G KGPRG G G G G PG G G++
Sbjct: 755 SRGPGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEAGPPGPPGPAGEK----------- 803
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAGI 786
DG G PG GP GI
Sbjct: 804 -------GSPGADGPAGAPGTPGPQGI 823
Score = 58.5 bits (140), Expect = 8e-09
Identities = 70/290 (24%), Positives = 80/290 (27%), Gaps = 31/290 (10%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +GD G G G TG GPPG AGE+ PG GLPG
Sbjct: 425 GSKGDTGAKGEPGPTGVQGPPGPAGEEGKREAXGE---------------PGPAGLPGPP 469
Query: 187 GER----------GLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
GER G GVAG G
Sbjct: 470 GERVSAPFSXXXPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGT 529
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G+ GPPG G AG +GE+ + G G+
Sbjct: 530 -GAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 588
Query: 517 XXXXXXXXXXXXQGI---------------------RGEKGEPGDKGPRGLPGLKGHNGL 633
QG G G PG +G GL G+ G G
Sbjct: 589 RGERGFPGERGVQGPPGPAGPRGANGXXXXXXXXGDAGAPGAPGSQGAPGLQGMPGERGA 648
Query: 634 QGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
GLPG G GD KDG G G +GP G
Sbjct: 649 AGLPGPKGDRGD------------AGPKGADGAPGKDGVRGLTGPIGPPG 686
>ref|NP_001098759.1| collagen alpha-2(V) chain [Sus scrofa].
Length = 1499
Score = 201 bits (512), Expect = 6e-52
Identities = 131/406 (32%), Positives = 165/406 (40%), Gaps = 11/406 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RGD G GR G+ G +GPPG G+K G +G+PG R
Sbjct: 942 GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQR 1001
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG+PG+ G +G G+DG PGRD
Sbjct: 1002 GERGMPGLPGPAGTPGKVGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1061
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G+R G RG+
Sbjct: 1062 GAVGERGDRGDPGPAGLPGSRGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLL 1121
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KG+ GD+G RG G +G GLQGLPG G +G+Q
Sbjct: 1122 GPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPV 1181
Query: 727 XXXXKDGRTGQPGAVGPAGIR----------XXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
K+G G G VGP G+R YD
Sbjct: 1182 GPSGKEGNPGPLGPVGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYD 1241
Query: 877 FGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRL 1053
+ ++ P + K D V ATLKSL++QIET+ +P+GS+K+PARTC DL+L
Sbjct: 1242 ESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKL 1301
Query: 1054 SHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
H SG YWIDPNQG DAIKVYC+ TGETCI A P +IP K
Sbjct: 1302 CHSAKQSGEYWIDPNQGSAEDAIKVYCNMETGETCISANPYSIPRK 1347
Score = 75.9 bits (185), Expect = 5e-14
Identities = 64/261 (24%), Positives = 74/261 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GP G GP+G GE G GPPG G + PG +GLPG
Sbjct: 580 VQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQ---------------------PGSMGLPG 618
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G G PG G G PG G G
Sbjct: 619 PKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQG 678
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE G RGE
Sbjct: 679 LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHG 738
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G G G PGD GP GL G+ G G+ G PG G G
Sbjct: 739 PDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG------------GIGEKG 786
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG +GP G
Sbjct: 787 AEGTAGNDGARGLPGPLGPPG 807
Score = 74.7 bits (182), Expect = 1e-13
Identities = 65/264 (24%), Positives = 77/264 (29%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG++G G GE G +G PG G PG G+PG R
Sbjct: 708 GPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGER 767
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG---PP 357
G G PG G G PG G PP
Sbjct: 768 GIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPP 827
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G G +GE + G +G+
Sbjct: 828 GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSP------------ 875
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G +G G PG GP G+PGLKG G QG PG G G
Sbjct: 876 ------GPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPTGAPGPA 929
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PG GP G+R
Sbjct: 930 ---------GPLGEPGKEGPPGLR 944
Score = 72.0 bits (175), Expect = 7e-13
Identities = 64/268 (23%), Positives = 78/268 (29%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +G+ GP G G G GP G GE+ G LG+PGS
Sbjct: 318 GSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSP 377
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG+ G DG PG+ GP G
Sbjct: 378 GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGLPGAVGTDGTPGAKGPTGSP 437
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G +G G G +GE
Sbjct: 438 GTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPP 497
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
+G RG +G+PG GP RG PG +G G GLPG G G++
Sbjct: 498 GEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQ 557
Query: 709 XXXXXXXXXXKDGR---TGQPGAVGPAG 783
G TG PG GP G
Sbjct: 558 GDPGRPGEPGLPGARGLTGNPGVQGPEG 585
Score = 70.1 bits (170), Expect = 3e-12
Identities = 69/277 (24%), Positives = 81/277 (29%), Gaps = 15/277 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPG---------FAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
RGPRGD G VG G G G PG G K
Sbjct: 503 RGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGR 562
Query: 157 PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
PG GLPG+RG G PGV G G+
Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 622
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G G PG G AG G+R + G G
Sbjct: 623 SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGP 682
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGL---PGLKGHNGLQGLPG---LAGHHGDQXX 678
QG+ G+ G G GPRG PG +G G+ GLPG +AG HG
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP 742
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G +G PG GP G++
Sbjct: 743 KG------------------SPGPSGTPGDTGPPGLQ 761
Score = 64.7 bits (156), Expect = 1e-10
Identities = 63/266 (23%), Positives = 74/266 (27%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFA------GEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RGP+G G G G+ GA GPPG G PG
Sbjct: 155 RGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGS 214
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
+G G RG +GL G G G PG
Sbjct: 215 VGPVGPRGPQGLQGQQGGAGPMGPPGEPGEPGPMGPIGARGPEGP---------PGKPGE 265
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
DG PGR+G G G G +GE
Sbjct: 266 DGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGATGSKGEAGP 325
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G RG GE G GP+G PG +G +G+ G PG G G
Sbjct: 326 TGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSPGFPGNPGM 385
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
+G GQ G GP G
Sbjct: 386 KGEAGPTGARGPEGPQGQRGETGPPG 411
Score = 62.8 bits (151), Expect = 4e-10
Identities = 67/264 (25%), Positives = 74/264 (28%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG +GP G+ GETG GP G G PG G PGS
Sbjct: 393 GARGPEGPQGQRGETGPPGPVGSQGLPGAVGTDGTPGAKGPTGSPGTSGPPGLAGPPGSP 452
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +G G G G PG G PG
Sbjct: 453 GPQGSTGPPGI------------------------------------RGQPGDPGVPGFK 476
Query: 367 GQAGHKGE---RXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+AG KGE G GE
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLP 536
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
QG RG G G KG +G PG G GL G GL G+ G Q
Sbjct: 537 GPKGAQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAP--- 593
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PG G GIR
Sbjct: 594 ---------GEDGRPGPPGSIGIR 608
>ref|XP_003355328.1| PREDICTED: collagen alpha-1(XI) chain isoform 4 [Sus scrofa].
Length = 1767
Score = 139 bits (349), Expect = 5e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1239 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1277
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1278 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1334
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1335 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1394
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1395 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGAQGSTGAKGDGGIPGP 1454
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1455 AGPIGPPGPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKK 1514
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1515 TRRHTESMQADAGDTILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1574
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1575 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1610
Score = 75.5 bits (184), Expect = 6e-14
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 879 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 938
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 939 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 965
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 966 EGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1025
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1026 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1120
Score = 72.4 bits (176), Expect = 5e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 931 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFP 990
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 991 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1050
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1051 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1092
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1093 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1140
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1141 GQKGDEGARGFPGPPGPIGLQ 1161
Score = 70.5 bits (171), Expect = 2e-12
Identities = 66/261 (25%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP G+ G G GPPG G G +G PG
Sbjct: 614 LLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 673
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+A G PG+DGPPG
Sbjct: 674 EKGPQGKPGLA---------------------------------------GLPGADGPPG 694
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 695 HPGKEGQSGEKGSLGPPGPQGPIGYP------------GPRG------------------ 724
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 725 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPR------------GEDG 772
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAG 793
Score = 68.2 bits (165), Expect = 1e-11
Identities = 63/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1004 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1036
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1037 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1096
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1097 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1129
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1130 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1189
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG++G G
Sbjct: 1190 PQGPNGADGPQGPPGSIGSVG 1210
Score = 63.2 bits (152), Expect = 3e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1111 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1158
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1159 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1185
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1186 GPRGPQGPNGADGPQGPPGSIGSVGGV---------GEKGEPGEAGNPGPPGEAGTGGPK 1236
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1237 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1293
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1294 GDKGEDGDPGQPGPPGPSG 1312
Score = 58.9 bits (141), Expect = 6e-09
Identities = 66/269 (24%), Positives = 76/269 (28%), Gaps = 12/269 (4%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
RG GP+G TG G G PG +G K G G PG +G
Sbjct: 489 RGPPGPMGLTGRPGPVGGPGSSGAK------------------------GESGEPGPQGP 524
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS--------- 345
RG+ G G DG G
Sbjct: 525 RGVQGPPGPTGKPGKRGRPGA------------------------DGGRGMPGEPGAKGD 560
Query: 346 ---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
DG PG G GH+GER + G RGE
Sbjct: 561 RGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGEDGMRGEDGEIGPRGL 605
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
+G G G+PG G G PG KG+ G QG PG G G+
Sbjct: 606 PGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G PGA GP G
Sbjct: 666 QGPIGPPGEKGPQGKPGLAGLPGADGPPG 694
Score = 55.8 bits (133), Expect = 5e-08
Identities = 60/264 (22%), Positives = 69/264 (26%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ G G GP G G G GPPG G PG GLPG
Sbjct: 629 IAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPG 688
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G G PG G G G DG PG
Sbjct: 689 ADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 748
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G G+
Sbjct: 749 FKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 808
Query: 541 XXXXQGIRGEKGEPG---DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G G G PG +KG RG+ G G G +G G G G +
Sbjct: 809 RQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 868
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
DG G PG GP G
Sbjct: 869 G---------DGPPGPPGERGPQG 883
>ref|XP_003355327.1| PREDICTED: collagen alpha-1(XI) chain isoform 3 [Sus scrofa].
Length = 1690
Score = 139 bits (349), Expect = 5e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1162 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1200
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1201 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1257
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1258 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1317
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1318 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGAQGSTGAKGDGGIPGP 1377
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1378 AGPIGPPGPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKK 1437
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1438 TRRHTESMQADAGDTILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1497
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1498 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1533
Score = 75.5 bits (184), Expect = 6e-14
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 802 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 861
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 862 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 888
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 889 EGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 948
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 949 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1008
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1009 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1043
Score = 72.4 bits (176), Expect = 5e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 854 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFP 913
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 914 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 973
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 974 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1015
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1016 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1063
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1064 GQKGDEGARGFPGPPGPIGLQ 1084
Score = 70.5 bits (171), Expect = 2e-12
Identities = 66/261 (25%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP G+ G G GPPG G G +G PG
Sbjct: 537 LLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 596
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+A G PG+DGPPG
Sbjct: 597 EKGPQGKPGLA---------------------------------------GLPGADGPPG 617
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 618 HPGKEGQSGEKGSLGPPGPQGPIGYP------------GPRG------------------ 647
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 648 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPR------------GEDG 695
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 696 PEGPKGRAGPTGDPGPSGQAG 716
Score = 68.2 bits (165), Expect = 1e-11
Identities = 63/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 927 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 959
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 960 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1019
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1020 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1052
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1053 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1112
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG++G G
Sbjct: 1113 PQGPNGADGPQGPPGSIGSVG 1133
Score = 63.2 bits (152), Expect = 3e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1034 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1081
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1082 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1108
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1109 GPRGPQGPNGADGPQGPPGSIGSVGGV---------GEKGEPGEAGNPGPPGEAGTGGPK 1159
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1160 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1216
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1217 GDKGEDGDPGQPGPPGPSG 1235
Score = 58.9 bits (141), Expect = 6e-09
Identities = 66/269 (24%), Positives = 76/269 (28%), Gaps = 12/269 (4%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
RG GP+G TG G G PG +G K G G PG +G
Sbjct: 412 RGPPGPMGLTGRPGPVGGPGSSGAK------------------------GESGEPGPQGP 447
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS--------- 345
RG+ G G DG G
Sbjct: 448 RGVQGPPGPTGKPGKRGRPGA------------------------DGGRGMPGEPGAKGD 483
Query: 346 ---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
DG PG G GH+GER + G RGE
Sbjct: 484 RGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGEDGMRGEDGEIGPRGL 528
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
+G G G+PG G G PG KG+ G QG PG G G+
Sbjct: 529 PGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 588
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G PGA GP G
Sbjct: 589 QGPIGPPGEKGPQGKPGLAGLPGADGPPG 617
Score = 55.8 bits (133), Expect = 5e-08
Identities = 60/264 (22%), Positives = 69/264 (26%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ G G GP G G G GPPG G PG GLPG
Sbjct: 552 IAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPG 611
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G G PG G G G DG PG
Sbjct: 612 ADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 671
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G G+
Sbjct: 672 FKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 731
Query: 541 XXXXQGIRGEKGEPG---DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G G G PG +KG RG+ G G G +G G G G +
Sbjct: 732 RQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 791
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
DG G PG GP G
Sbjct: 792 G---------DGPPGPPGERGPQG 806
>ref|XP_003355326.1| PREDICTED: collagen alpha-1(XI) chain isoform 2 [Sus scrofa].
Length = 1818
Score = 139 bits (349), Expect = 5e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1290 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1328
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1329 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1385
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1386 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1445
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1446 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGAQGSTGAKGDGGIPGP 1505
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1506 AGPIGPPGPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKK 1565
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1566 TRRHTESMQADAGDTILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1625
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1626 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1661
Score = 75.5 bits (184), Expect = 6e-14
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 930 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 989
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 990 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 1016
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 1017 EGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1076
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1077 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1171
Score = 72.4 bits (176), Expect = 5e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 982 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFP 1041
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 1042 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1101
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1102 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1143
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1144 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1191
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1192 GQKGDEGARGFPGPPGPIGLQ 1212
Score = 70.5 bits (171), Expect = 2e-12
Identities = 66/261 (25%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP G+ G G GPPG G G +G PG
Sbjct: 665 LLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 724
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+A G PG+DGPPG
Sbjct: 725 EKGPQGKPGLA---------------------------------------GLPGADGPPG 745
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 746 HPGKEGQSGEKGSLGPPGPQGPIGYP------------GPRG------------------ 775
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 776 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPR------------GEDG 823
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAG 844
Score = 68.2 bits (165), Expect = 1e-11
Identities = 63/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1055 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1087
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1088 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1147
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1148 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1180
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1181 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1240
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG++G G
Sbjct: 1241 PQGPNGADGPQGPPGSIGSVG 1261
Score = 63.2 bits (152), Expect = 3e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1162 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1209
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1210 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1236
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1237 GPRGPQGPNGADGPQGPPGSIGSVGGV---------GEKGEPGEAGNPGPPGEAGTGGPK 1287
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1288 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1344
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1345 GDKGEDGDPGQPGPPGPSG 1363
Score = 58.9 bits (141), Expect = 6e-09
Identities = 66/269 (24%), Positives = 76/269 (28%), Gaps = 12/269 (4%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
RG GP+G TG G G PG +G K G G PG +G
Sbjct: 540 RGPPGPMGLTGRPGPVGGPGSSGAK------------------------GESGEPGPQGP 575
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS--------- 345
RG+ G G DG G
Sbjct: 576 RGVQGPPGPTGKPGKRGRPGA------------------------DGGRGMPGEPGAKGD 611
Query: 346 ---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
DG PG G GH+GER + G RGE
Sbjct: 612 RGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGEDGMRGEDGEIGPRGL 656
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
+G G G+PG G G PG KG+ G QG PG G G+
Sbjct: 657 PGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G PGA GP G
Sbjct: 717 QGPIGPPGEKGPQGKPGLAGLPGADGPPG 745
Score = 55.8 bits (133), Expect = 5e-08
Identities = 60/264 (22%), Positives = 69/264 (26%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ G G GP G G G GPPG G PG GLPG
Sbjct: 680 IAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPG 739
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G G PG G G G DG PG
Sbjct: 740 ADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 799
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G G+
Sbjct: 800 FKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 859
Query: 541 XXXXQGIRGEKGEPG---DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G G G PG +KG RG+ G G G +G G G G +
Sbjct: 860 RQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 919
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
DG G PG GP G
Sbjct: 920 G---------DGPPGPPGERGPQG 934
>ref|XP_001929407.3| PREDICTED: collagen alpha-1(XI) chain isoform 1 [Sus scrofa].
Length = 1806
Score = 139 bits (349), Expect = 5e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1278 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1316
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1317 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1373
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1374 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1433
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1434 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGAQGSTGAKGDGGIPGP 1493
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1494 AGPIGPPGPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKK 1553
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1554 TRRHTESMQADAGDTILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1613
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1614 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1649
Score = 75.5 bits (184), Expect = 6e-14
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 918 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 977
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 978 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 1004
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 1005 EGAKGDPGPQGVSGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1064
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1065 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1159
Score = 72.4 bits (176), Expect = 5e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 970 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDGPAGLRGFP 1029
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1089
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1090 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1131
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1132 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1179
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1180 GQKGDEGARGFPGPPGPIGLQ 1200
Score = 70.5 bits (171), Expect = 2e-12
Identities = 66/261 (25%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG GP G+ G G GPPG G G +G PG
Sbjct: 653 LLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 712
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+A G PG+DGPPG
Sbjct: 713 EKGPQGKPGLA---------------------------------------GLPGADGPPG 733
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 734 HPGKEGQSGEKGSLGPPGPQGPIGYP------------GPRG------------------ 763
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 764 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPR------------GEDG 811
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAG 832
Score = 68.2 bits (165), Expect = 1e-11
Identities = 63/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1043 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1075
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1076 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1135
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1136 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1168
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1169 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1228
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG++G G
Sbjct: 1229 PQGPNGADGPQGPPGSIGSVG 1249
Score = 63.2 bits (152), Expect = 3e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1150 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1197
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1198 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1224
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1225 GPRGPQGPNGADGPQGPPGSIGSVGGV---------GEKGEPGEAGNPGPPGEAGTGGPK 1275
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1276 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1332
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1333 GDKGEDGDPGQPGPPGPSG 1351
Score = 58.9 bits (141), Expect = 6e-09
Identities = 66/269 (24%), Positives = 76/269 (28%), Gaps = 12/269 (4%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
RG GP+G TG G G PG +G K G G PG +G
Sbjct: 528 RGPPGPMGLTGRPGPVGGPGSSGAK------------------------GESGEPGPQGP 563
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS--------- 345
RG+ G G DG G
Sbjct: 564 RGVQGPPGPTGKPGKRGRPGA------------------------DGGRGMPGEPGAKGD 599
Query: 346 ---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
DG PG G GH+GER + G RGE
Sbjct: 600 RGFDGLPGLPGDKGHRGER---------------GPQGPPGPPGEDGMRGEDGEIGPRGL 644
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
+G G G+PG G G PG KG+ G QG PG G G+
Sbjct: 645 PGEAGPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G PGA GP G
Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPG 733
Score = 55.8 bits (133), Expect = 5e-08
Identities = 60/264 (22%), Positives = 69/264 (26%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ G G GP G G G GPPG G PG GLPG
Sbjct: 668 IAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPG 727
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+ G G PG G G G DG PG
Sbjct: 728 ADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 787
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G G+
Sbjct: 788 FKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 847
Query: 541 XXXXQGIRGEKGEPG---DKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G G G PG +KG RG+ G G G +G G G G +
Sbjct: 848 RQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 907
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
DG G PG GP G
Sbjct: 908 G---------DGPPGPPGERGPQG 922
>ref|XP_003128380.1| PREDICTED: collagen alpha-2(XI) chain-like isoform 2 [Sus scrofa].
Length = 1630
Score = 127 bits (320), Expect = 1e-29
Identities = 106/396 (26%), Positives = 132/396 (33%), Gaps = 11/396 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G +GP G G G GP GF G+ PG G PG
Sbjct: 1142 GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPT 1201
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PG G G+PG+ G PG+
Sbjct: 1202 GENGPPGPLGK------------------RGPAGTPGPEGRQGEKGAKGDPGAVGAPGKT 1243
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G + G G
Sbjct: 1244 GPVGPAGPAGKPGPDGLRGLPGSVG---------QQGRPGATGQAGPPGPVGPPGLPGLR 1294
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G +GEKG PG G G PG +G G +GLPG G G +
Sbjct: 1295 GDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPP 1354
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYRA 906
G G GA GPAG + D R
Sbjct: 1355 GLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1414
Query: 907 DQ----------PRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
Q P SP L E+ +L SL +IE + P G++ +PARTC+DL+L
Sbjct: 1415 MQEDEAMPTGGAPGSPGGLE----EIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLC 1470
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
HPE G YW+DPNQGC DA +V+C+F+ GETC+
Sbjct: 1471 HPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCV 1506
Score = 73.2 bits (178), Expect = 3e-13
Identities = 62/267 (23%), Positives = 79/267 (29%), Gaps = 6/267 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G GD GP G G G +GPPG AG + G GLPG
Sbjct: 402 LKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPG 461
Query: 181 SRGERG------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG 342
+G RG LPG G G G
Sbjct: 462 EKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 521
Query: 343 SDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXX 522
DGP G G G +GE + G +G+
Sbjct: 522 MDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDG 581
Query: 523 XXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
G +G +G G +GP G PG +G G+ G+ GL GH G++
Sbjct: 582 PPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKG 641
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G+ G GP G
Sbjct: 642 DMGVKGDRGEVGVPGSRGEDGPEGPKG 668
Score = 71.2 bits (173), Expect = 1e-12
Identities = 67/260 (25%), Positives = 77/260 (29%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G +GP GRTG TG GPPG GEK PG+ G G
Sbjct: 658 RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGL---------------PGYPGRQGP 702
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG G+ G G G
Sbjct: 703 KGSLGFPGFPGA---------------------------------------SGEKGARGL 723
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G +GER G RG+
Sbjct: 724 SGKPGPRGERGPT------------------------GPRGQRGPRGATGKSGAKGTSGG 759
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
G GE+G PG +GP G PG KG G G GL GH G +
Sbjct: 760 DGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQR---------------GE 804
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
K G G PG VGP G
Sbjct: 805 VGFQGKTGPPGPPGVVGPQG 824
Score = 70.5 bits (171), Expect = 2e-12
Identities = 64/263 (24%), Positives = 79/263 (30%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G GP+G G G GPPG AGEK PG G PG
Sbjct: 913 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 972
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
GE G G G + G G+DG PG
Sbjct: 973 AGEDGDKGEVGD---------PGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGA 1023
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G GH G + + G G+
Sbjct: 1024 RGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGP 1083
Query: 544 XXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G +G G G+ GP +G PG G G+QG PG+ G G++
Sbjct: 1084 NGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGER-------------- 1129
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+ G +GQPG VGP G
Sbjct: 1130 -------GEKGESGQPGEVGPPG 1145
Score = 68.2 bits (165), Expect = 1e-11
Identities = 64/259 (24%), Positives = 73/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 821 GPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFP 880
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG AG G PG GPPG
Sbjct: 881 GERGLPGTAGG---PGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAA 937
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G GE+ G G+
Sbjct: 938 GEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGD------KGEVGDPGQKGAK 991
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G G G PG GP G PG G +G G G GH G +
Sbjct: 992 GNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1051
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G+ G VGP G
Sbjct: 1052 GLPGPSGEKGETGDVGPMG 1070
Score = 64.7 bits (156), Expect = 1e-10
Identities = 66/268 (24%), Positives = 75/268 (27%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GPVG+ G GA G PG G + G GLPG
Sbjct: 1001 GPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPI---GLQGLPGPS 1057
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G G G + G PG G PG
Sbjct: 1058 GEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQ 1117
Query: 367 GQAGHKG---ERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+ G KG ER GN G
Sbjct: 1118 GEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPR 1177
Query: 538 XXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXX 699
+G RGE GEPG G G PG G G G PG G G++
Sbjct: 1178 GQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEK--------- 1228
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G+TG G GPAG
Sbjct: 1229 ---GAKGDPGAVGAPGKTGPVGPAGPAG 1253
Score = 60.1 bits (144), Expect = 3e-09
Identities = 66/262 (25%), Positives = 74/262 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP G QGP+G G G G G G K G +G+PGS
Sbjct: 598 QGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGS 657
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGE G G G R G GS G PG
Sbjct: 658 RGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPG------RQGPKGSLGFPGF 711
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G +G KG R K G RGE
Sbjct: 712 PGASGEKGARGLSG---------------------KPGPRGERGPTGPRGQRGPRGATGK 750
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+G G G G G RGLPG +G NG G G G G
Sbjct: 751 SGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPG------------------- 791
Query: 724 XXXXXKDGRTGQPGAVGPAGIR 789
KDG G PG G G +
Sbjct: 792 -----KDGLPGHPGQRGEVGFQ 808
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,572,585
Number of extensions: 494396
Number of successful extensions: 17495
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 6739
Number of HSP's successfully gapped: 346
Length of query: 447
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,804,438
Effective search space: 3037531110
Effective search space used: 3037531110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012839
(1343 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031769.2| collagen alpha-2(I) chain precursor [Mus muscul... 428 e-125
Alignment gi|NP_112440.2| collagen alpha-1(II) chain isoform 1 precursor ... 255 2e-74
Alignment gi|NP_001106987.2| collagen alpha-1(II) chain isoform 2 precurs... 255 2e-74
Alignment gi|NP_031768.2| collagen alpha-1(I) chain precursor [Mus muscul... 250 2e-66
Alignment gi|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musc... 201 6e-56
Alignment gi|NP_031763.2| collagen alpha-2(V) chain precursor [Mus muscul... 204 1e-52
Alignment gi|NP_031755.2| collagen alpha-1(XI) chain precursor [Mus muscu... 138 1e-32
Alignment gi|NP_034056.1| collagen alpha-2(XI) chain [Mus musculus]. 129 4e-30
Alignment gi|NP_058615.1| collagen alpha-3(V) chain [Mus musculus]. 124 2e-28
Alignment gi|NP_056549.2| collagen alpha-1(V) chain precursor [Mus muscul... 124 2e-28
>ref|NP_031769.2| collagen alpha-2(I) chain precursor [Mus musculus].
Length = 1372
Score = 428 bits (1100), Expect(2) = e-125
Identities = 223/397 (56%), Positives = 235/397 (59%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+RGPRGDQGPVGRTGETGASGPPGF GEK APG LGLPG
Sbjct: 824 IRGPRGDQGPVGRTGETGASGPPGFVGEKGPSGEPGTAGAPGTAGPQGLLGAPGILGLPG 883
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
SRGERGLPG+AG++ RDGNPGSDGPPG
Sbjct: 884 SRGERGLPGIAGALGEPGPLGISGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPG 943
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDGQ GHKGER KHGNRGE
Sbjct: 944 RDGQPGHKGERGYPGSIGPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRG 1003
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QGIRG+KGEPGDKG RGLPGLKG++GLQGLPGLAG HGDQ
Sbjct: 1004 PSGPQGIRGDKGEPGDKGHRGLPGLKGYSGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAG 1063
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFY 900
KDGR+GQPG VGPAG+R YDFG+EGDFY
Sbjct: 1064 PSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFY 1123
Query: 901 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1080
RADQPRS PSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEW+S Y
Sbjct: 1124 RADQPRSQPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDY 1183
Query: 1081 YWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
YWIDPNQGCTMDAIKVYCDFSTGETCI+A P N PAK
Sbjct: 1184 YWIDPNQGCTMDAIKVYCDFSTGETCIQAQPVNTPAK 1220
Score = 40.8 bits (94), Expect(2) = e-125
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 1182 PSKNWYRNSKVKKHVWVXETIHGGTHLKYIWKELPQGNGYT-TCFMRLLA 1328
P+KN Y ++ KHVW+ ETI+GG+ +Y + + T FMRLLA
Sbjct: 1218 PAKNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEMATQLAFMRLLA 1267
Score = 75.5 bits (184), Expect = 9e-14
Identities = 70/261 (26%), Positives = 82/261 (31%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G GPVG G G++GPPGF G PG G G
Sbjct: 240 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN------------PGPAGPAGP 287
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGE GLPG++G V G PG G PG
Sbjct: 288 RGEVGLPGLSGPVGPPGNPGTNGLTGAKGATGLPGVAGAP---------GLPGPRGIPGP 338
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G AG G R G++GE
Sbjct: 339 AGAAGATGARGLVGEPGPA------------------GSKGESGNKGEPGSVGAQGPPGP 380
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+G RG GE G GP G PGL+G G +GLPG G G
Sbjct: 381 SGEEGKRGSPGEAGSAGPAGPPGLRGSPGSRGLPGADGRAG---VMGPPGNRGSTGPAGI 437
Query: 724 XXXXXKDGRTGQPGAVGPAGI 786
GR G+PG +GP G+
Sbjct: 438 RGPNGDAGRPGEPGLMGPRGL 458
Score = 64.3 bits (155), Expect = 2e-10
Identities = 65/262 (24%), Positives = 76/262 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G G G +G GP G G G G PG
Sbjct: 452 LMGPRGLPGSPGNVGPSGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPG 511
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG PG+AG+ DGN G+ GPPG
Sbjct: 512 KPGERGHPGLAGA------------------------------RGAPGPDGNNGAQGPPG 541
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KGE+ + G GE
Sbjct: 542 PQGVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGERGLPGE---------------FG 586
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G RGE+G PG+ G G G G G G PG G+ G+
Sbjct: 587 LPGPAGPRGERGTPGESGAAGPSGPIGSRGPSGAPGPDGNKGEAGAV------------- 633
Query: 721 XXXXXXKDGRTGQPGAVGPAGI 786
G G GA GP G+
Sbjct: 634 --------GAPGSAGASGPGGL 647
Score = 61.2 bits (147), Expect = 2e-09
Identities = 67/269 (24%), Positives = 78/269 (28%), Gaps = 9/269 (3%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP G QG G GE G +GPPGF G PG GLPG
Sbjct: 537 QGPPGPQGVQGGKGEQGPAGPPGFQG------LPGPSGTTGEVGKPGERGLPGEFGLPGP 590
Query: 184 ---RGERGLPGVAGS------VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
RGERG PG +G+ + G
Sbjct: 591 AGPRGERGTPGESGAAGPSGPIGSRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGE 650
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G+ G PG G+ G G R G+RGE
Sbjct: 651 RGAAGIPGGKGEKGETGLRGDTGNTGRDGARGIPGAVGAPGPAGASGDRGEAGAAGPSGP 710
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G RG GE G+ GP G G G G G PG G G +
Sbjct: 711 A------------GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGEKGTKGPKGENGI 758
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G TG GA GP+G
Sbjct: 759 V---------------GPTGSVGAAGPSG 772
Score = 54.7 bits (130), Expect = 2e-07
Identities = 68/289 (23%), Positives = 78/289 (26%), Gaps = 27/289 (9%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFA------------------------GEKXXXXXXX 108
LRG G+ G G G GA G PG A GE+
Sbjct: 668 LRGDTGNTGRDGARGIPGAVGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAG 727
Query: 109 XXXXXXXXXXXXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXX 288
A G G G +GE G+ G GSV
Sbjct: 728 PNGFAGPAGAAGQPGAKGEKGTKGPKGENGIVGPTGSVGAAGPSGPNGPPGPVGSRGDGG 787
Query: 289 XXXXXXXXXXXXRDGNPGSD---GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 459
R G PG GPPG G AG +G R
Sbjct: 788 PPGMTGFPGAAGRTGPPGPSGIAGPPGPPGAAGKEGIR---------------------- 825
Query: 460 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 639
G RG+ G GEKG G+ G G PG G GL G
Sbjct: 826 -----GPRGD------QGPVGRTGETGASGPPGFVGEKGPSGEPGTAGAPGTAGPQGLLG 874
Query: 640 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
PG+ G G + G G PGAVG G+
Sbjct: 875 APGILGLPGSRGERGLPGIAGALGEPGPLGISGPPGARGPPGAVGSPGV 923
>ref|NP_112440.2| collagen alpha-1(II) chain isoform 1 precursor [Mus musculus].
Length = 1487
Score = 255 bits (652), Expect(2) = 2e-74
Identities = 152/408 (37%), Positives = 182/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR G+ G GP G GEK G +GLPG
Sbjct: 929 KGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQ 988
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 1048
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 1049 DGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G++G RGL G +G GLQGLPG G GDQ
Sbjct: 1109 AGPQGPRGDKGESGEQGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1168
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF-GYEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1169 VGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPPGSPGPPGPPGPPGPGIDMSAFAGLGQ 1228
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RAD+ S +LR D EVDATLKSLNNQIE++ +P+GSRKNPARTC+DL
Sbjct: 1229 REKGPDPMQYMRADEADS--TLRQHDVEVDATLKSLNNQIESIRSPDGSRKNPARTCQDL 1286
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P +P K
Sbjct: 1287 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPATVPRK 1334
Score = 43.1 bits (100), Expect(2) = 2e-74
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ET++GG H Y L P F+RLL+T
Sbjct: 1332 PRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLST 1383
Score = 87.4 bits (215), Expect = 2e-17
Identities = 69/265 (26%), Positives = 81/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG +GE+ G+ GL G++
Sbjct: 240 GPRGPPGPAGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 359
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + GN G
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAK 419
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG GDQ
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQ 479
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG GP G
Sbjct: 480 GAPGPAGEEGKRGARGEPGGAGPIG 504
Score = 72.8 bits (177), Expect = 6e-13
Identities = 66/263 (25%), Positives = 78/263 (29%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QG G G G+ GP G +G PG G+PG+
Sbjct: 383 RGPEGAQGSRGEPGNPGSPGPAGASGN------------------------PGTDGIPGA 418
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ G G GP G
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGP 478
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G GE K G RGE
Sbjct: 479 QGAPGPAGEEG------------------------KRGARGEPGGAGPIGPPGERGAPGN 514
Query: 544 XXX---QGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 515 RGFPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARG 597
Score = 72.0 bits (175), Expect = 1e-12
Identities = 67/260 (25%), Positives = 75/260 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G GPPG G + PG +G PG +
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQ---------------------PGVMGFPGPK 608
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG +DG G+ GPPG
Sbjct: 609 GANGEPGKAGE---------------------KGLAGAPGLRGLPGKDGETGAAGPPGPS 647
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +GE+ G G
Sbjct: 648 GPAGERGEQ---------------------------GAPGPSGFQGLPGPPGPPGEGGKQ 680
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QGI GE G PG GPRG G G G G GL G G
Sbjct: 681 GDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAAGPDGPP 740
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G G PG G AGI
Sbjct: 741 GAQGPPGLQGMPGERGAAGI 760
Score = 71.6 bits (174), Expect = 1e-12
Identities = 68/260 (26%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G GETG GP GFAG APG G G+
Sbjct: 813 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 872
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +G GV G +GNPG GPPG
Sbjct: 873 GPQGPTGVTGP---------KGARGAQGPPGATGFPGAAGRVGPPGANGNPGPAGPPGPA 923
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G KG R G G+
Sbjct: 924 GKDGPKGVRGDSGPP---------------------GRAGD---------------PGLQ 947
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GEKGEPGD GP GL G G GL G G+ G G +
Sbjct: 948 GPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQ 1007
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G G PG VGP G+
Sbjct: 1008 GAPGASGDRGPPGPVGPPGL 1027
Score = 70.9 bits (172), Expect = 2e-12
Identities = 71/271 (26%), Positives = 78/271 (28%), Gaps = 9/271 (3%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QG G G G +G PG AG K APG G G
Sbjct: 437 RGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQG------APGPAGEEGK 490
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RG RG PG AG + G G++G PGR
Sbjct: 491 RGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGR 550
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G G R + G G
Sbjct: 551 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGA 610
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL---AGHHGDQXXXXXXXXXXXXXX 714
G GEKG G G RGLPG G G G PG AG G+Q
Sbjct: 611 NGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGP 670
Query: 715 XXXXXXXXKDG------RTGQPGAVGPAGIR 789
K G G PG VGP G R
Sbjct: 671 PGPPGEGGKQGDQGIPGEAGAPGLVGPRGER 701
Score = 70.5 bits (171), Expect = 3e-12
Identities = 63/266 (23%), Positives = 75/266 (28%), Gaps = 3/266 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 199 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPAGKPGDDGEAG 258
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERGLPG G+ G+PG +G
Sbjct: 259 KPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 318
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER G G
Sbjct: 319 SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 378
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G +G +GEPG+ G G G G+ G G+PG G G
Sbjct: 379 PTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAGIR 789
G GQ G G AG +
Sbjct: 439 PPGPQGATGPLGPKGQAGEPGIAGFK 464
Score = 65.1 bits (157), Expect = 1e-10
Identities = 69/283 (24%), Positives = 79/283 (27%), Gaps = 21/283 (7%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP------- 159
L G G +G G+ GETGA+GPPG +G P
Sbjct: 622 LAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKQG 681
Query: 160 --------GFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 315
G GL G RGERG PG GS
Sbjct: 682 DQGIPGEAGAPGLVGPRGERGFPGERGS---------PGAQGLQGPRGLPGTPGTDGPKG 732
Query: 316 XXXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
DG PG+ GPPG G G +G G +G
Sbjct: 733 AAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV---------------GEKGPEG 777
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAG 657
G GEKGE G GP RG PG +G G G G AG
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAG 837
Query: 658 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
G G +G PG GP G+
Sbjct: 838 PPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 880
>ref|NP_001106987.2| collagen alpha-1(II) chain isoform 2 precursor [Mus musculus].
Length = 1419
Score = 255 bits (652), Expect(2) = 2e-74
Identities = 152/408 (37%), Positives = 182/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR G+ G GP G GEK G +GLPG
Sbjct: 861 KGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQ 920
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 921 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 980
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 981 DGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1040
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G++G RGL G +G GLQGLPG G GDQ
Sbjct: 1041 AGPQGPRGDKGESGEQGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1100
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF-GYEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1101 VGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPPGSPGPPGPPGPPGPGIDMSAFAGLGQ 1160
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RAD+ S +LR D EVDATLKSLNNQIE++ +P+GSRKNPARTC+DL
Sbjct: 1161 REKGPDPMQYMRADEADS--TLRQHDVEVDATLKSLNNQIESIRSPDGSRKNPARTCQDL 1218
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P +P K
Sbjct: 1219 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPATVPRK 1266
Score = 43.1 bits (100), Expect(2) = 2e-74
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ET++GG H Y L P F+RLL+T
Sbjct: 1264 PRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLST 1315
Score = 87.4 bits (215), Expect = 2e-17
Identities = 69/265 (26%), Positives = 81/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG +GE+ G+ GL G++
Sbjct: 172 GPRGPPGPAGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 231
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 232 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 291
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + GN G
Sbjct: 292 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAK 351
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG GDQ
Sbjct: 352 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQ 411
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG GP G
Sbjct: 412 GAPGPAGEEGKRGARGEPGGAGPIG 436
Score = 72.8 bits (177), Expect = 6e-13
Identities = 66/263 (25%), Positives = 78/263 (29%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QG G G G+ GP G +G PG G+PG+
Sbjct: 315 RGPEGAQGSRGEPGNPGSPGPAGASGN------------------------PGTDGIPGA 350
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ G G GP G
Sbjct: 351 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGP 410
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G GE K G RGE
Sbjct: 411 QGAPGPAGEEG------------------------KRGARGEPGGAGPIGPPGERGAPGN 446
Query: 544 XXX---QGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 447 RGFPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 506
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 507 VGPSGAPGEDGRPGPPGPQGARG 529
Score = 72.0 bits (175), Expect = 1e-12
Identities = 67/260 (25%), Positives = 75/260 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G GPPG G + PG +G PG +
Sbjct: 502 GPQGKVGPSGAPGEDGRPGPPGPQGARGQ---------------------PGVMGFPGPK 540
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG +DG G+ GPPG
Sbjct: 541 GANGEPGKAGE---------------------KGLAGAPGLRGLPGKDGETGAAGPPGPS 579
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +GE+ G G
Sbjct: 580 GPAGERGEQ---------------------------GAPGPSGFQGLPGPPGPPGEGGKQ 612
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QGI GE G PG GPRG G G G G GL G G
Sbjct: 613 GDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAAGPDGPP 672
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G G PG G AGI
Sbjct: 673 GAQGPPGLQGMPGERGAAGI 692
Score = 71.6 bits (174), Expect = 1e-12
Identities = 68/260 (26%), Positives = 77/260 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G +G G GETG GP GFAG APG G G+
Sbjct: 745 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 804
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +G GV G +GNPG GPPG
Sbjct: 805 GPQGPTGVTGP---------KGARGAQGPPGATGFPGAAGRVGPPGANGNPGPAGPPGPA 855
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G KG R G G+
Sbjct: 856 GKDGPKGVRGDSGPP---------------------GRAGD---------------PGLQ 879
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GEKGEPGD GP GL G G GL G G+ G G +
Sbjct: 880 GPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQ 939
Query: 727 XXXXKDGRTGQPGAVGPAGI 786
G G PG VGP G+
Sbjct: 940 GAPGASGDRGPPGPVGPPGL 959
Score = 70.9 bits (172), Expect = 2e-12
Identities = 71/271 (26%), Positives = 78/271 (28%), Gaps = 9/271 (3%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QG G G G +G PG AG K APG G G
Sbjct: 369 RGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQG------APGPAGEEGK 422
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RG RG PG AG + G G++G PGR
Sbjct: 423 RGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGR 482
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G G R + G G
Sbjct: 483 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGA 542
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGL---AGHHGDQXXXXXXXXXXXXXX 714
G GEKG G G RGLPG G G G PG AG G+Q
Sbjct: 543 NGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGP 602
Query: 715 XXXXXXXXKDG------RTGQPGAVGPAGIR 789
K G G PG VGP G R
Sbjct: 603 PGPPGEGGKQGDQGIPGEAGAPGLVGPRGER 633
Score = 70.5 bits (171), Expect = 3e-12
Identities = 63/266 (23%), Positives = 75/266 (28%), Gaps = 3/266 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 131 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPAGKPGDDGEAG 190
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERGLPG G+ G+PG +G
Sbjct: 191 KPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 250
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER G G
Sbjct: 251 SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG 310
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
+G +G +GEPG+ G G G G+ G G+PG G G
Sbjct: 311 PTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 370
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAGIR 789
G GQ G G AG +
Sbjct: 371 PPGPQGATGPLGPKGQAGEPGIAGFK 396
Score = 65.1 bits (157), Expect = 1e-10
Identities = 69/283 (24%), Positives = 79/283 (27%), Gaps = 21/283 (7%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP------- 159
L G G +G G+ GETGA+GPPG +G P
Sbjct: 554 LAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKQG 613
Query: 160 --------GFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 315
G GL G RGERG PG GS
Sbjct: 614 DQGIPGEAGAPGLVGPRGERGFPGERGS---------PGAQGLQGPRGLPGTPGTDGPKG 664
Query: 316 XXXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
DG PG+ GPPG G G +G G +G
Sbjct: 665 AAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV---------------GEKGPEG 709
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAG 657
G GEKGE G GP RG PG +G G G G AG
Sbjct: 710 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAG 769
Query: 658 HHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
G G +G PG GP G+
Sbjct: 770 PPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 812
>ref|NP_031768.2| collagen alpha-1(I) chain precursor [Mus musculus].
Length = 1453
Score = 250 bits (639), Expect = 2e-66
Identities = 146/416 (35%), Positives = 183/416 (43%), Gaps = 11/416 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GPRG+ GP GR GE G GPPG AGEK G +GLPG
Sbjct: 896 KGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQ 955
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG++G PGR
Sbjct: 956 RGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGR 1015
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG G KG+R K+G+RGE
Sbjct: 1016 DGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGP 1075
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1076 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGS 1135
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGY------ 885
KDG G PG +GP G R YDF +
Sbjct: 1136 AGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQ 1195
Query: 886 -----EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G +YRAD +R +D EVD TLKSL+ QIE + +PEGSRKNPARTCRDL+
Sbjct: 1196 EKSQDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLK 1252
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAKTGTETPKSR 1218
+ H +W SG YWIDPNQGC +DAIKVYC+ TG+TC+ ++P K +P +
Sbjct: 1253 MCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYISPNPK 1308
Score = 73.2 bits (178), Expect = 4e-13
Identities = 65/261 (24%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L G +G G G G G +GPPG AG+ G G PG
Sbjct: 523 LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGTAGEPG 582
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERGLPG G+V G PG GPPG
Sbjct: 583 KAGERGLPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 642
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G +G + G GE
Sbjct: 643 EAGKPGEQG------------VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGNNG 690
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G+ G PG G +G PGL+G G +G GL G GD+
Sbjct: 691 APGNDGAKGDTGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR---------GDAGPKG 741
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
KDG G G +GP G
Sbjct: 742 ADGSPGKDGARGLTGPIGPPG 762
Score = 64.3 bits (155), Expect = 2e-10
Identities = 64/269 (23%), Positives = 76/269 (28%), Gaps = 6/269 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+GD GP G G G G G G+ PG G PG
Sbjct: 100 VEGPKGDPGPQGPRGPVGPPGRDGIPGQ------------------------PGLPGPPG 135
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G PG+ G+ G G GPPG
Sbjct: 136 PPGPPGPPGLGGNFASQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG 195
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G G K+G+ GE
Sbjct: 196 EPGEPGGSG---------------PMGPRGPPGPPGKNGDDGE----------------- 223
Query: 541 XXXXQGIRGEKGEPGDKGPR------GLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
G GE+G PG +G R GLPG+KGH G GL G G G
Sbjct: 224 -AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG 282
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PG G AG R
Sbjct: 283 ENGAPGQMGPRGLPGERGRPGPPGTAGAR 311
Score = 62.0 bits (149), Expect = 1e-09
Identities = 66/263 (25%), Positives = 78/263 (29%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RG +GP G GE G GP G AG PG G PG+
Sbjct: 347 QGARGSEGPQGVRGEPGPPGPAGAAGPAGN---------------------PGADGQPGA 385
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ GN G G PG
Sbjct: 386 KGANGAPGIAGAPGFPGARGPSGPQGPSGPPGPK---------------GNSGEPGAPGN 430
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G KGE K G RGE
Sbjct: 431 KGDTGAKGE---------PGATGVQGPPGPAGEEGKRGARGEPGPSGLP----------- 470
Query: 544 XXXQGIRGEKGEPGDK---GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G GE+G PG + G G+ G KG +G +G PG AG G
Sbjct: 471 ----GPPGERGGPGSRGFPGADGVAGPKGPSGERGAPGPAGPKGSPGEAGRPGEAGLPGA 526
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G G+ G GPAG
Sbjct: 527 KGLTGSPGSPGPDGKTGPPGPAG 549
Score = 57.4 bits (137), Expect = 3e-08
Identities = 60/266 (22%), Positives = 72/266 (27%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASG------PPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
+GPRG GP GR G G G PPG G PG
Sbjct: 110 QGPRGPVGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYDEKSAGVSVPGP 169
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
+G G RG G PG G ++G+ G
Sbjct: 170 MGPSGPRGLPGPPGAPGP------QGFQGPPGEPGEPGGSGPMGPRGPPGPPGKNGDDGE 223
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
G PGR G+ G G + G+ G
Sbjct: 224 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 283
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
+G+ GE+G PG G G G G G G PG G G
Sbjct: 284 NGAPGQMGPRGLPGERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFPGAVGAKGE 343
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G+PG GPAG
Sbjct: 344 AGPQGARGSEGPQGVRGEPGPPGPAG 369
Score = 48.9 bits (115), Expect = 9e-06
Identities = 26/78 (33%), Positives = 33/78 (42%)
Frame = +1
Query: 556 GIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXX 735
G+ G KG+PG +GPRG G G +G+ G PGL G G
Sbjct: 99 GVEGPKGDPGPQGPRGPVGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYD 158
Query: 736 XKDGRTGQPGAVGPAGIR 789
K PG +GP+G R
Sbjct: 159 EKSAGVSVPGPMGPSGPR 176
>ref|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musculus].
Length = 1464
Score = 201 bits (512), Expect(2) = 6e-56
Identities = 133/409 (32%), Positives = 159/409 (38%), Gaps = 12/409 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+GD G G G GA GPPG G A G G PG
Sbjct: 918 IAGPKGDAGQPGEKGPPGAQGPPGSPGP---------------LGIAGLTGARGLAGPPG 962
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G RG PG G RDGNPGSDG PG
Sbjct: 963 MPGPRGSPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSDGQPG 1022
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDG G KG+R K G+RGE
Sbjct: 1023 RDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSGAPGPAGARG 1082
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1083 APGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAIGSPGPAGPRGPVG 1142
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDF------- 879
KDG +G PG +GP G R
Sbjct: 1143 PHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAA 1202
Query: 880 --GYEGDFYRADQPR---SPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRD 1044
G G+ P P + E+ ++LKS+N QIE+L++P+GSRKNPAR CRD
Sbjct: 1203 IAGVGGEKSGGFSPYYGDDPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNCRD 1262
Query: 1045 LRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
L+ HPE SG YW+DPNQGC MDAIKV+C+ TGETCI A P +P K
Sbjct: 1263 LKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRK 1311
Score = 35.4 bits (80), Expect(2) = 6e-56
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRNSKV-KKHVWVXETIHGGTHLKYIWKELPQG-NGYTTCFMRLLAT 1331
P K+W+ +S KKHVW E+++GG Y +LP+ F+RLL++
Sbjct: 1309 PRKHWWTDSGAEKKHVWFGESMNGGFQFSYGPPDLPEDVVDVQLAFLRLLSS 1360
Score = 69.7 bits (169), Expect = 5e-12
Identities = 62/262 (23%), Positives = 73/262 (27%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G QG G G G +G PG G K PG G+PG+R
Sbjct: 635 GPQGLQGIPGTGGPPGENGKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGAR 694
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG---SDGPP 357
G G PG G G PG +DG P
Sbjct: 695 GGAGPPGPEGGKGPAGPPGPPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVP 754
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+DG G G G GE
Sbjct: 755 GKDGPRGPAGPIGPPGPAGQPGDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAP 814
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G +GE+G PG+KG G PG G G G G G G +
Sbjct: 815 GQNGEPGAKGERGAPGEKGEGGPPGPAGPTGSSGPAGPPGPQGVKGERGSPGGPGTAGFP 874
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
G G PG GP+G
Sbjct: 875 GGRGLPGPPGNNGNPGPPGPSG 896
Score = 67.0 bits (162), Expect = 3e-11
Identities = 65/269 (24%), Positives = 74/269 (27%), Gaps = 9/269 (3%)
Frame = +1
Query: 4 RGPRGDQGPVG---------RTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
+GP+GD GP G G+ G GPPG G
Sbjct: 106 QGPKGDPGPPGIPGRNGDPGLPGQPGLPGPPGSPGICESCPTGGQNYSPQFDSYDVKSGV 165
Query: 157 PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
G G PG G G PG GS G+
Sbjct: 166 GGMGGYPGPAGPPGPPGPPGS------------------------------------SGH 189
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
PGS G PG G G G+ + G GE
Sbjct: 190 PGSPGSPGYQGPPGEPGQAGPAGPPGPPGALGPAGPAGKDGESGRPGRPGERGLPGPPGI 249
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXX 696
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 250 KGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGPMGPRGAPGERGR 309
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 310 PGLPGAAGARGNDGARGSDGQPGPPGPPG 338
Score = 66.6 bits (161), Expect = 4e-11
Identities = 66/265 (24%), Positives = 78/265 (29%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G +GP G G GASG PG G G G PG +
Sbjct: 701 GPEGGKGPAGPPGPPGASGSPGLQGMPGER---------------------GGPGSPGPK 739
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G PG AG+ G+PG G G
Sbjct: 740 GEKGEPGGAGA------DGVPGKDGPRGPAGPIGPPGPAGQPGDKGEGGSPGLPGIAGPR 793
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +GE G +GE
Sbjct: 794 GGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGPAGPTGSSGPAGPP 853
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
QG++GE+G PG G RGLPG G+NG G PG +G G
Sbjct: 854 GPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGNPGPPGPSGAPGKD---GPPGPAGNS 910
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 911 GSPGNPGIAGPKGDAGQPGEKGPPG 935
Score = 66.2 bits (160), Expect = 5e-11
Identities = 63/262 (24%), Positives = 73/262 (27%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G+ G SG PG GE+ GF G G +
Sbjct: 215 GPPGALGPAGPAGKDGESGRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEK 274
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG---PP 357
GE G PG+ G DG GSDG PP
Sbjct: 275 GETGAPGLKGENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPP 334
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G AG G G+ G
Sbjct: 335 GPPGTAGFPGS---------------PGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQ 379
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G G G G+ GP G+PG G G +G PG AG +G
Sbjct: 380 GPPGPPGNNGSPGGKGEMGPAGIPGAPGLIGARGPPGPAGTNGIPGTRGPSGEPGKNGAK 439
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G PG GP G
Sbjct: 440 GEPGARGERGEAGSPGIPGPKG 461
Score = 65.5 bits (158), Expect = 9e-11
Identities = 67/273 (24%), Positives = 78/273 (28%), Gaps = 12/273 (4%)
Frame = +1
Query: 1 LRGPRGDQGPV------------GRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXX 144
L G RG GP G G+ GA G PG GE+
Sbjct: 408 LIGARGPPGPAGTNGIPGTRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDG 467
Query: 145 XXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 324
PG GLPG+ GERG G G
Sbjct: 468 SPGEPGANGLPGAAGERGPSGFRGPAGP-------------------------------- 495
Query: 325 RDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXX 504
+G PG GPPG G G G R GN G+
Sbjct: 496 -NGIPGEKGPPGERGGPGPAGPRGVAGEPGRDGTPGGPGIRGMPGSPGGPGNDGK----- 549
Query: 505 XXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXX 684
QG G G PG GPRG PG+ G G +G G G +G++
Sbjct: 550 ----------PGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGER---- 595
Query: 685 XXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K+G TG G GP G
Sbjct: 596 -----GGPGGPGLPGPAGKNGETGPQGPPGPTG 623
Score = 65.5 bits (158), Expect = 9e-11
Identities = 61/259 (23%), Positives = 71/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G+ G G GE GA+G PG AGE+ PG G PG
Sbjct: 458 GPKGEDGKDGSPGEPGANGLPGAAGER---GPSGFRGPAGPNGIPGEKGPPGERGGPGPA 514
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG+ G G R G PG GP G+
Sbjct: 515 GPRGVAGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQP 574
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G + K+G G
Sbjct: 575 GVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPP 634
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG++G G G G G PG G G G PG G GD
Sbjct: 635 GPQGLQGIPGTGGPPGENGKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGAR 694
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G G GP G
Sbjct: 695 GGAGPPGPEGGKGPAGPPG 713
>ref|NP_031763.2| collagen alpha-2(V) chain precursor [Mus musculus].
Length = 1497
Score = 204 bits (520), Expect = 1e-52
Identities = 131/408 (32%), Positives = 165/408 (40%), Gaps = 12/408 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RGD G GR G+ G +GPPG G+K G +G+PG R
Sbjct: 940 GLRGDPGSHGRVGDRGPAGPPGSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQR 999
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG+PG+ G +G G+DG PGRD
Sbjct: 1000 GERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1059
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G+R G RGE
Sbjct: 1060 GAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLP 1119
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KG+ GD+G RG G +G GLQGLPG G +G+Q
Sbjct: 1120 GPQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPV 1179
Query: 727 XXXXKDGRTGQPGAVGPAGIR----------XXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
K+G G G +GP G+R YD
Sbjct: 1180 GPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYD 1239
Query: 877 FGYEGDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
+ DQ +P D + TLKSL++QIET+ +P+GS+K+PARTC DL+
Sbjct: 1240 ENMPDPLPEFTEDQ-AAPDDTNKTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLK 1298
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAKT 1194
L HP SG YWIDPNQG DAIKVYC+ TGETCI A P ++P KT
Sbjct: 1299 LCHPTKQSGEYWIDPNQGSAEDAIKVYCNMETGETCISANPASVPRKT 1346
Score = 75.1 bits (183), Expect = 1e-13
Identities = 65/264 (24%), Positives = 77/264 (29%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG++G G GE G +G PG G PG G+PG R
Sbjct: 706 GPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGER 765
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG---PP 357
G G PG G G PG G PP
Sbjct: 766 GIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPP 825
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G G +GE + G +G+
Sbjct: 826 GSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSP------------ 873
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G +G G PG GP G+PGLKG G QG PG G G
Sbjct: 874 ------GPQGLAGSPGPHGPHGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPA 927
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PG GP G+R
Sbjct: 928 ---------GPAGEPGKEGPPGLR 942
Score = 71.6 bits (174), Expect = 1e-12
Identities = 64/268 (23%), Positives = 78/268 (29%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +G+ GP G G G GP G GE+ G LG+PGS
Sbjct: 316 GAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMPGKPGPMGPLGIPGSS 375
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG+ G DG PG+ GP G
Sbjct: 376 GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAVGTDGTPGAKGPTGSA 435
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G +G G G +GE
Sbjct: 436 GTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPKGEPGPHGIQGPIGPP 495
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
+G RG +G+PG GP RG PG +G G GLPG G G++
Sbjct: 496 GEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQ 555
Query: 709 XXXXXXXXXXKDGR---TGQPGAVGPAG 783
G TG PG GP G
Sbjct: 556 GDPGRPGEPGLPGARGLTGNPGVQGPEG 583
Score = 69.7 bits (169), Expect = 5e-12
Identities = 70/277 (25%), Positives = 78/277 (28%), Gaps = 15/277 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPG---------FAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
RGPRGD G VG G G G PG G K
Sbjct: 501 RGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGR 560
Query: 157 PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
PG GLPG+RG G PGV G G+
Sbjct: 561 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 620
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G G PG G AG G+R + G G
Sbjct: 621 SGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGP 680
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP---GLAGHHGDQXX 678
QG+ GE G G GP RG PG +G G+ GLP G+AG HG
Sbjct: 681 PGPPGEGGKAGDQGVPGEPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP 740
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G G GP G R
Sbjct: 741 KGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDR 777
Score = 68.6 bits (166), Expect = 1e-11
Identities = 64/261 (24%), Positives = 77/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GP G GP+G GE G GPPG G + + G LG PG
Sbjct: 578 VQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKG---------SSGDLGKPG 628
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G+PG G+ G PG GPPG
Sbjct: 629 EAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGF---QGLPGPPGPPG 685
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+AG +G G RGE
Sbjct: 686 EGGKAGDQG---------VPGEPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHG 736
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G G G GD GP GL G+ G G+ G PG G G
Sbjct: 737 PDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGTPGPKGDRG------------GIGEKG 784
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG +GP G
Sbjct: 785 AEGTAGNDGARGLPGPLGPPG 805
Score = 66.2 bits (160), Expect = 5e-11
Identities = 66/273 (24%), Positives = 82/273 (30%), Gaps = 12/273 (4%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL-- 174
L GP G +G G GE G +G GFAG + +PG GL
Sbjct: 821 LVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAG 880
Query: 175 -PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG G G+PG+ G R G PG G
Sbjct: 881 SPGPHGPHGVPGLKGG------------------RGTQGPPGATGFPGSAGRVGPPGPAG 922
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G AG G+ G RG+
Sbjct: 923 APGPAGPAGEPGKEGPP------------------------GLRGDPGSHGRVGDRGPAG 958
Query: 532 XXXXXXXQGIRGEKGEPGDKGP---------RGLPGLKGHNGLQGLPGLAGHHGDQXXXX 684
+G GE G+PG GP RG+ G+ G G +G+PGL G G
Sbjct: 959 PPGSPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG 1018
Query: 685 XXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+G G+PG GPAG
Sbjct: 1019 PTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAG 1051
Score = 63.9 bits (154), Expect = 3e-10
Identities = 64/274 (23%), Positives = 74/274 (27%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G GP+G G G G PG GE APG GL G R
Sbjct: 241 GEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSGSPGARGFPGAPGLPGLKGHR 300
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP---GSDGPP 357
G +GL G G + G P G+ G P
Sbjct: 301 GHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMP 360
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+ G G G G RGE
Sbjct: 361 GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV 420
Query: 538 XXXXXQGIRGEKGEPGDKGPRGL------PGLKGHNGLQGL------PGLAGHHGDQXXX 681
G +G G G GP GL PG +G G QG+ PG+ G G+
Sbjct: 421 GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPK 480
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G PG VGP G
Sbjct: 481 GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPG 514
Score = 53.1 bits (126), Expect = 5e-07
Identities = 56/235 (23%), Positives = 65/235 (27%), Gaps = 12/235 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G G VG TG TG GPPG G G +G G
Sbjct: 1007 LPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERG 1066
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
RG+ G G+ GS + G PG GP G
Sbjct: 1067 DRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRG 1126
Query: 361 RDGQ------AGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXX 522
G G KG R G RG
Sbjct: 1127 DKGDNGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEG 1186
Query: 523 XXXXXXXXXXQGIRGEKGE------PGDKGPRGLPGLKGHNGLQGLPGLAGHHGD 669
G+RG GE PG+ GP G PG GH L + GH+ +
Sbjct: 1187 NPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHL-TAALGDIMGHYDE 1240
>ref|NP_031755.2| collagen alpha-1(XI) chain precursor [Mus musculus].
Length = 1804
Score = 138 bits (347), Expect = 1e-32
Identities = 117/420 (27%), Positives = 140/420 (33%), Gaps = 34/420 (8%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G G GPPG G K PG +G PG
Sbjct: 1276 RGEKGEAGPPGAAGPAGIKGPPGDDGPKGN---------------------PGPVGFPGD 1314
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG DG+PG GPPG
Sbjct: 1315 PGPPGEPGPAGQ---------------------------DGVGGDKGEDGDPGQPGPPGP 1347
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+AG G G G+
Sbjct: 1348 SGEAGPPGPPGKRGPPGASGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGL 1407
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
G GE+G PG G G PG G GL GL G G G++
Sbjct: 1408 RGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGE 1467
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFYR 903
G G PGA G GI G +GD
Sbjct: 1468 KGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGM 1527
Query: 904 ADQPRSP----------PSLRPK------------------DY-----EVDATLKSLNNQ 984
P P P L PK DY E+ +L SL
Sbjct: 1528 PGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQGDAGDNILDYSDGMEEIFGSLNSLKQD 1587
Query: 985 IETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
IE + P G++ NPARTC+DL+LSHP++ G YWIDPNQGC+ D+ KVYC+F+ GETCI
Sbjct: 1588 IEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCI 1647
Score = 78.2 bits (191), Expect = 1e-14
Identities = 67/282 (23%), Positives = 84/282 (29%), Gaps = 21/282 (7%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP G+ GP+ GE G GPPG GE+ G G+ G
Sbjct: 970 QGPTGETGPI---GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGIRGF 1026
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
GERGLPG G+ R G G GP G
Sbjct: 1027 PGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGE 1086
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G KG + + G++GE
Sbjct: 1087 KGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGP 1146
Query: 544 XXXQGIRGEKGEP---------------------GDKGPRGLPGLKGHNGLQGLPGLAGH 660
G++G G P GD+G RG PGL G GLQGLPG G
Sbjct: 1147 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGLPGPIGLQGLPGPPGE 1206
Query: 661 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
G+ DG G PG++G G+
Sbjct: 1207 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGV 1248
Score = 76.3 bits (186), Expect = 5e-14
Identities = 66/260 (25%), Positives = 83/260 (31%), Gaps = 3/260 (1%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
RG GP+G TG G G PG AG K PG G PG+ G
Sbjct: 526 RGPPGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 585
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRDGQ 372
RG+PG +GS G+ G DG PG G
Sbjct: 586 RGMPGESGS------------------------------------KGDRGFDGLPGLPGD 609
Query: 373 AGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXX 552
GH+GER G G
Sbjct: 610 KGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIGGI 669
Query: 553 QGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP---GLAGHHGDQXXXXXXXXXXXXXXXXX 723
G +G KG G +G G PG +G+ G QGLP G G G++
Sbjct: 670 DGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGP 729
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
K+G++G+ GA+GP G
Sbjct: 730 PGHPGKEGQSGEKGALGPPG 749
Score = 71.6 bits (174), Expect = 1e-12
Identities = 64/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G G+ G
Sbjct: 968 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGIRGFP 1027
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 1028 GERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1087
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1088 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1129
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1130 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1177
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1178 GQKGDEGARGFPGLPGPIGLQ 1198
Score = 65.9 bits (159), Expect = 7e-11
Identities = 61/260 (23%), Positives = 75/260 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG RG QGP G G+ G G G G + PG G+ G
Sbjct: 613 RGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIGGIDGP 672
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G +G G G + GNPG G PG
Sbjct: 673 QGPKGNMGPQGE------------------------------PGPPGQQGNPGPQGLPGP 702
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G GE+ + G +G
Sbjct: 703 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 762
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 763 KGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPR------------GEDGP 810
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 811 EGPKGRAGPTGDPGPSGQAG 830
Score = 65.1 bits (157), Expect = 1e-10
Identities = 67/265 (25%), Positives = 77/265 (29%), Gaps = 3/265 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLGL 174
+G G QGP+G GE G G PG AG P G +G
Sbjct: 697 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 756
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG RG +G GV G G G DG
Sbjct: 757 PGPRGVKGADGVRG---------------------------------LKGSKGEKGEDGF 783
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G G KG+R + G RGE
Sbjct: 784 PGFKGDMGLKGDR---------------------GEVGQVGPRGE--------------- 807
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G +G G GD GP G G KG G+ GLPG G G +
Sbjct: 808 ---DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGE 864
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIR 789
K G GQ G GP G R
Sbjct: 865 KGARGIAGKPGPRGQRGPTGPRGSR 889
Score = 63.5 bits (153), Expect = 4e-10
Identities = 64/267 (23%), Positives = 80/267 (29%), Gaps = 6/267 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG+ GP G G G +G PG +G+ + GF G PG+
Sbjct: 803 GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGAN 862
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G G+AG G G DGPPG
Sbjct: 863 GEKGARGIAGKPGPRGQRGPTGPRGSRGARGPTGKPGPK---------GTSGGDGPPGPP 913
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G +G + + G G
Sbjct: 914 GERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETG-------------------- 953
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG G G G GP+G G G G +G PG G G+Q
Sbjct: 954 -FQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQ---------------GLP 997
Query: 727 XXXXKDGRTGQPGAV------GPAGIR 789
K+G G PG GPAGIR
Sbjct: 998 GAAGKEGAKGDPGPQGISGKDGPAGIR 1024
>ref|NP_034056.1| collagen alpha-2(XI) chain [Mus musculus].
Length = 1650
Score = 129 bits (325), Expect = 4e-30
Identities = 109/390 (27%), Positives = 136/390 (34%), Gaps = 4/390 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G GP GR GE GA G PG G G GLPGS
Sbjct: 1234 RGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGLAGKPGPD------GLRGLPGS 1287
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G++G PG G G PG GPPG
Sbjct: 1288 VGQQGRPGATGQA------------------------------------GPPGPVGPPGL 1311
Query: 364 DG---QAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G AG KGE+ + G +G+
Sbjct: 1312 PGLRGDAGAKGEKGHPGLIGLIGPTG------------EQGEKGD--------------- 1344
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G+ G +G PG KG G+PG G G G PGL G G +
Sbjct: 1345 ------RGLPGPQGSPGQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKG- 1397
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGD 894
+ G G PG GP G G
Sbjct: 1398 --------EKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSKLIQDEEAVPTG---- 1445
Query: 895 FYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSS 1074
P SP L E+ +L SL +IE + P G++ +PARTC+DL+L HPE
Sbjct: 1446 ----GAPGSPAGLE----EIFGSLDSLREEIEQMRRPAGTQDSPARTCQDLKLCHPELPD 1497
Query: 1075 GYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
G YW+DPNQGC DA +V+C+F+ GETC+
Sbjct: 1498 GEYWVDPNQGCARDAFRVFCNFTAGGETCV 1527
Score = 71.6 bits (174), Expect = 1e-12
Identities = 67/280 (23%), Positives = 80/280 (28%), Gaps = 18/280 (6%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G GD GP G G G +GPPG AG + G GLPG
Sbjct: 423 LKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGMKGDRGFDGLPGLPG 482
Query: 181 SRGERG------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG 342
+G+RG LPG G G G
Sbjct: 483 EKGQRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 542
Query: 343 SDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXX 522
DGP G G G +GE + G RG+
Sbjct: 543 MDGPHGPKGSLGPQGEPGPPGQQGTPGAQGLPGPQGAIGPHGEKGARGKPGLPGMPGSDG 602
Query: 523 XXXXXXXXXXQGIRGEKGEPGDKGPRGLPG------------LKGHNGLQGLPGLAGHHG 666
G +G +G G +GP G PG LKGH G +G G G G
Sbjct: 603 LPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKG 662
Query: 667 DQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
D GRTG G GP G+
Sbjct: 663 DIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPTGL 702
Score = 71.6 bits (174), Expect = 1e-12
Identities = 66/263 (25%), Positives = 75/263 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+RG G GP G G G GPPG G PG G+PG
Sbjct: 540 VRGMDGPHGPKGSLGPQGEPGPPGQQGTPGAQGLPGPQGAIGPHGEKGARGKPGLPGMPG 599
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
S G G PG G G G DG PG
Sbjct: 600 SDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPG 659
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G KG+R G+RGE
Sbjct: 660 FKGDIGVKGDRGEVGVP---------------------GSRGE----------------- 681
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G GD GP GL G KG G+ GLPG G G +
Sbjct: 682 -DGPEGPKGRTGPTGDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKG 740
Query: 721 XXXXXXKDGRTGQPGAVGPAGIR 789
K G G+ G GP G R
Sbjct: 741 ARGLSGKSGPRGERGPTGPRGQR 763
Score = 70.5 bits (171), Expect = 3e-12
Identities = 68/260 (26%), Positives = 78/260 (30%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG G GP+G G G GPPG AGEK G +GLPG
Sbjct: 934 RGAAGSGGPIGPPGRPGPQGPPGAAGEK------GVPGEKGPIGPTGRDGVQGPVGLPGP 987
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G PGVAG DG+ G G PG+
Sbjct: 988 AGP---PGVAG------------------------------------EDGDKGEVGDPGQ 1008
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G+KGE HG G
Sbjct: 1009 KGTKGNKGE---------------------------HGPPGPPGPIGPVGQPGAAGADGE 1041
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+G +G G GD+G RG G G GLQGLPG +G G+
Sbjct: 1042 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDGGPMGPPGPPGPRGP 1101
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
DG G PG VG G
Sbjct: 1102 AGPNGADGPQGSPGGVGNLG 1121
Score = 70.1 bits (170), Expect = 4e-12
Identities = 68/260 (26%), Positives = 77/260 (29%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP G QGP+G G G G G G K G +G+PGS
Sbjct: 619 QGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGS 678
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGE G G G R G GS G PG
Sbjct: 679 RGEDGPEGPKGRTGPTGDPGPTGLMGEKGKLGVPGLPGYPG------RQGPKGSLGFPGF 732
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G +G KG R G RG+
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPT------------GPRGQRGPRGATGKSGAKGTSGG 780
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
G GE+G PG +GP G PG KG G G GL GH G +
Sbjct: 781 DGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLPGHPGQR---------------GE 825
Query: 724 XXXXXKDGRTGQPGAVGPAG 783
K G G PG VGP G
Sbjct: 826 VGFQGKTGPPGPPGVVGPQG 845
Score = 64.7 bits (156), Expect = 2e-10
Identities = 64/263 (24%), Positives = 72/263 (27%), Gaps = 3/263 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G G GPPG GE PG G PG +
Sbjct: 1103 GPNGADGPQGSPGGVGNLGPPGEKGE------------------------PGESGSPGVQ 1138
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G+ G G G G GPPG
Sbjct: 1139 GEPGVKGPRGE------------------------------RGEKGESGQAGEAGPPGPK 1168
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G + G+RGE
Sbjct: 1169 GPTGDNGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1228
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RG G PG +G +G G KG G G PG G G
Sbjct: 1229 GPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGLAGKPGPDGLRGLPGSV 1288
Query: 727 XXXXKDGRTGQ---PGAVGPAGI 786
+ G TGQ PG VGP G+
Sbjct: 1289 GQQGRPGATGQAGPPGPVGPPGL 1311
>ref|NP_058615.1| collagen alpha-3(V) chain [Mus musculus].
Length = 1739
Score = 124 bits (311), Expect = 2e-28
Identities = 111/399 (27%), Positives = 137/399 (34%), Gaps = 14/399 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +GD GP G G G GPPG G K PG LG PG
Sbjct: 1228 GEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGPTGL---------------PGDLGPPGDP 1272
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G+ G+ G + G+PG GP GR+
Sbjct: 1273 GVPGIDGIPGE---------KGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPEGRE 1323
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+ G KG+ G RG
Sbjct: 1324 GEKGAKGDAGPDGPPGRTGPI---------------GARGPPGRIGPDGLPGIPGPVGEP 1368
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKG---------HNGLQGL---PGLAGHHGDQXXXXXX 690
G G G PG GP GLPGLKG H GL GL PG AG GDQ
Sbjct: 1369 GLLGPPGLIGPPGPLGPPGLPGLKGDAGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQ 1428
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXX 870
G G PG VGP G +
Sbjct: 1429 GPPGLQGDPGLPGPVGSLGHPGPPGVVGPLGQKGSKGSPGSLGPRGDPGPAGPPGPP--- 1485
Query: 871 YDFGYEGDFYRADQPRS-PPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
G + + + RS +L EV A+L SL+ +++ L P G+ ++P CR+L
Sbjct: 1486 ---GSPAEVHGLRRRRSVTDTLEGGLEEVMASLNSLSLELQQLQRPLGTAESPGLMCREL 1542
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
HP G YWIDPNQGC DA KV+C+F+ GETC+
Sbjct: 1543 HRDHPHLPDGEYWIDPNQGCARDAFKVFCNFTAGGETCL 1581
Score = 71.6 bits (174), Expect = 1e-12
Identities = 71/283 (25%), Positives = 82/283 (28%), Gaps = 24/283 (8%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGA---SGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFL--- 168
GPRG+ GP G+ G G GPPG AGEK PG L
Sbjct: 754 GPRGEDGPEGQKGPGGLPGDEGPPGAAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPL 813
Query: 169 ---------GLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 321
G PG GERG PG G
Sbjct: 814 GEKGKRGKAGQPGEEGERGTPGTRGDRGQPGATGQPGPKGDVGQNGSPGPPGEKGLPGLQ 873
Query: 322 XRDGNPGSDGPP---GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEX 492
G PG GPP G+DG +GH G+R G GE
Sbjct: 874 GPPGFPGPKGPPGPQGKDGISGHPGQRGELGFQGLTGPPGPAGVLGPQGKVGDVGPLGER 933
Query: 493 XXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLP------GLA 654
+G +GE G G G G PG +G G QG P GL
Sbjct: 934 GPPGPPGPPGEQGLPGIEGREGAKGELGPLGSVGKEGPPGPRGFPGPQGAPGDPGPIGLK 993
Query: 655 GHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G G++G G +GPAG
Sbjct: 994 GDKGPPGPVGANGSPGERGPVGPSGGIGLPGQSGGQGPIGPAG 1036
Score = 71.2 bits (173), Expect = 2e-12
Identities = 63/259 (24%), Positives = 74/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +G QGP G TG+ G GP G G + PG LG PG
Sbjct: 580 GVKGLQGPPGPTGQAGEPGPRGLIGPR---------------------GLPGPLGRPGVT 618
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G+V GNPG G PG +
Sbjct: 619 GSDGAPGAKGNVGPPGEPGPPGQQGNHGSQGIPGPQGPIGTPGEKGPPGNPGIPGVPGSE 678
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G GH G G G
Sbjct: 679 GPPGHPGHEGPTGEKGAQGPPGSAGPRGYPGLRGVKGTSGNRGLQGEKGERGEDGFPGFK 738
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +G++G PG GPRG G +G G GLPG G G
Sbjct: 739 GDEGPKGDRGNPGPPGPRGEDGPEGQKGPGGLPGDEGPPG---AAGEKGKLGVPGLPGYP 795
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G PG +GP G
Sbjct: 796 GRPGPKGSIGFPGPLGPLG 814
Score = 71.2 bits (173), Expect = 2e-12
Identities = 65/259 (25%), Positives = 75/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G G G TGE GA GPPG AG + G G PG +
Sbjct: 679 GPPGHPGHEGPTGEKGAQGPPGSAGPRGYPGLRGVKGTSGNRGLQGEKGERGEDGFPGFK 738
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G+ G G G+ + G PG G PGR
Sbjct: 739 GDEGPKGDRGNPGPPGPRGEDGPEGQKGPGGLPGDEGPPGAAGEKGKLGVPGLPGYPGRP 798
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G RG+
Sbjct: 799 GPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGTPGTRGDRGQPGATGQPGPKGDVGQN 858
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GEKG PG +GP G PG KG G QG G++GH G +
Sbjct: 859 GSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGISGHPGQRGELGFQGLTGPPGPAGVL 918
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K G G G GP G
Sbjct: 919 GPQGKVGDVGPLGERGPPG 937
Score = 69.3 bits (168), Expect = 6e-12
Identities = 64/261 (24%), Positives = 75/261 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+RGP G G G G G GPPG G+K PG GLPG
Sbjct: 1103 IRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGP---------PGLQGLPG 1153
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GE+G G GS+ G PG G G
Sbjct: 1154 PPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGAVGEKGEPGDAGDAG 1213
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G G + + G++G
Sbjct: 1214 PPGIPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGPTGLPGDLGPPGDPG 1273
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
GI GEKG GD G G PG G G +GLPG G G
Sbjct: 1274 VPGIDGIPGEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPG------------------ 1315
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+GR G+ GA G AG
Sbjct: 1316 ---RMGPEGREGEKGAKGDAG 1333
Score = 68.6 bits (166), Expect = 1e-11
Identities = 66/257 (25%), Positives = 75/257 (29%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
+G GPVG TG G G PG+ G K G G G+ G
Sbjct: 477 KGPPGPVGLTGRPGPVGLPGYPGLKGELGEVGPQGPRGLQGPPGPPGREGKTGRAGADGA 536
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRDGQ 372
RGLPG G DG G GPPG GQ
Sbjct: 537 RGLPGDTGP---KGDRGFDGLPGLPGEKGQRGDFGRVGQPGPPGEDGVKGLQGPPGPTGQ 593
Query: 373 AGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXX 552
AG G R GN G
Sbjct: 594 AGEPGPRGLIGPRGLPGPLGRPGVTGSDGAPGAKGNVG------------PPGEPGPPGQ 641
Query: 553 QGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXXXX 732
QG G +G PG +GP G PG KG G G+PG+ G G
Sbjct: 642 QGNHGSQGIPGPQGPIGTPGEKGPPGNPGIPGVPGSEG------------------PPGH 683
Query: 733 XXKDGRTGQPGAVGPAG 783
+G TG+ GA GP G
Sbjct: 684 PGHEGPTGEKGAQGPPG 700
Score = 65.5 bits (158), Expect = 9e-11
Identities = 60/268 (22%), Positives = 79/268 (29%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G VG GE G GPPG GE+ G G G
Sbjct: 919 GPQGKVGDVGPLGERGPPGPPGPPGEQGLPGIEGREGAKGELGPLGSVGKEGPPGPRGFP 978
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +G PG G + + G G GP G
Sbjct: 979 GPQGAPGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGGIGLPGQSGGQGPIGPAGEK 1038
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G + G++GE
Sbjct: 1039 GSPGERGTPGPTGKDGIPGPPGLQGPSGAAGPSGEEGDKGE---------------VGMP 1083
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGL---------QGLPGLAGHHGDQXXXXXXXXX 699
+G +G+KG+ G GP G+ G GH+GL +G PGL G GD
Sbjct: 1084 GHKGSKGDKGDAGPPGPTGIRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVI 1143
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ G G G++GP G
Sbjct: 1144 GPPGLQGLPGPPGEKGEVGDVGSMGPHG 1171
Score = 63.5 bits (153), Expect = 4e-10
Identities = 65/265 (24%), Positives = 77/265 (29%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G +G +G GPPGF G++ PG GLPG
Sbjct: 391 GPAGAPGPRGISGPSGPPGPPGFPGDRGL---------------------PGPAGLPGIP 429
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS---DGPP 357
G G G+ G+V G PG G P
Sbjct: 430 GIDGARGLPGTVIMMPFHFASSSMKGPPVSFQQAQAQAVLQQAQLSMKGPPGPVGLTGRP 489
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G G G+ G + K G G
Sbjct: 490 GPVGLPGYPGLKGELGEVGPQGPRGLQGPPGPPGREGKTGRAGADGARGLPGDTGPKGDR 549
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHN---GLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G+ GEKG+ GD G G PG G + GLQG PG G G+
Sbjct: 550 GFDGLPGLPGEKGQRGDFGRVGQPGPPGEDGVKGLQGPPGPTGQAGEPGPRGLIGPRGLP 609
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
DG G G VGP G
Sbjct: 610 GPLGRPGVTGSDGAPGAKGNVGPPG 634
>ref|NP_056549.2| collagen alpha-1(V) chain precursor [Mus musculus].
Length = 1838
Score = 124 bits (310), Expect = 2e-28
Identities = 105/394 (26%), Positives = 134/394 (34%), Gaps = 9/394 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G +GP G G G+ GP GF G+ PG G PG
Sbjct: 1321 GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPT 1380
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G G G G PG GP G
Sbjct: 1381 GEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLR 1440
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G GE+ G +GE
Sbjct: 1441 GIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLI------------ 1488
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGL---QGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G+ G GE G+KG RGLPG +G +G QG+ G +G G
Sbjct: 1489 ---GLIGPPGEQGEKGDRGLPGPQGSSGPKGDQGITGPSGPLGPPGPPGLPGPPGPKGAK 1545
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDF 897
G G PG GP G D G G+
Sbjct: 1546 GSSGPTGPKGEAGHPGLPGPPG----PPGEVIQPLPIQASRTRRNIDASQLLDDG-AGES 1600
Query: 898 YRADQPRSPPSLRPKDY-----EVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHP 1062
Y DY E+ +L SL +IE + P G+++NPARTC+DL+L HP
Sbjct: 1601 Y-------------VDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHP 1647
Query: 1063 EWSSGYYWIDPNQGCTMDAIKVYCDFST-GETCI 1161
++ G YW+DPNQGC+ D+ KVYC+F+ G TC+
Sbjct: 1648 DFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCV 1681
Score = 73.2 bits (178), Expect = 4e-13
Identities = 65/281 (23%), Positives = 80/281 (28%), Gaps = 21/281 (7%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GP G+ GP+G G G GPPG G PG G PG
Sbjct: 1002 QGPTGETGPMGERGHPGPPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPG- 1060
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+RGLPG G++ R G G GP G
Sbjct: 1061 --DRGLPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGE 1118
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G KG + + G++GE
Sbjct: 1119 KGLPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP 1178
Query: 544 XXXQGIRGEKGEP---------------------GDKGPRGLPGLKGHNGLQGLPGLAGH 660
G +G G+P GD+G RG PG G GLQGLPG G
Sbjct: 1179 PGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGE 1238
Query: 661 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G+ DG G PG +G G
Sbjct: 1239 KGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPG 1279
Score = 72.4 bits (176), Expect = 8e-13
Identities = 65/262 (24%), Positives = 76/262 (29%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP GD GP+G TGE G G PG G G G PG R
Sbjct: 850 GPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPR 909
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG-- 360
G+RG G G G PG GPPG
Sbjct: 910 GQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969
Query: 361 -RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
+DG GH G+R + G GE
Sbjct: 970 GKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP 1029
Query: 538 XXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
+G +G+ G G G G PGL+G G +GLPG G G +
Sbjct: 1030 GAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPPGPPGPAGSP 1089
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
G G PG GP G
Sbjct: 1090 GERGPAGAAGPIGIPGRPGPQG 1111
Score = 69.3 bits (168), Expect = 6e-12
Identities = 69/263 (26%), Positives = 79/263 (30%), Gaps = 6/263 (2%)
Frame = +1
Query: 13 RGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSRGE 192
RG GP+G TG G GPPG G K PG +G G RG
Sbjct: 558 RGPAGPMGLTGRPGPMGPPGSGGLKGE---------------------PGDMGPQGPRGV 596
Query: 193 RGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRDGQ 372
+G PG G R G GSDG G GQ
Sbjct: 597 QGPPGPTGK---------------------------------PGRRGRAGSDGARGMPGQ 623
Query: 373 AGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXXXX 552
G KG+R G+ GE
Sbjct: 624 TGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGIPGDDGE---RGDDGEVGPRGLPGEPGP 680
Query: 553 QGIRGEKGEPGDKGPRGL------PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G+ G KG PG GP G+ PG KG+ G QG PG G G+
Sbjct: 681 RGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGP 740
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
K G G PGA GP G
Sbjct: 741 PGEKGPLGKPGLPGMPGADGPPG 763
Score = 65.9 bits (159), Expect = 7e-11
Identities = 63/259 (24%), Positives = 71/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G G G GE G GPPG G G G PG +
Sbjct: 760 GPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFK 819
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G+ G+ G G + + G PG G PGR
Sbjct: 820 GDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQ 879
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G G RGE
Sbjct: 880 GPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGD 939
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GE+G G +GP G PG KG G G GL GH G +
Sbjct: 940 GPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQR---------------GET 984
Query: 727 XXXXKDGRTGQPGAVGPAG 783
K G G PG VGP G
Sbjct: 985 GFQGKTGPPGPPGVVGPQG 1003
Score = 63.9 bits (154), Expect = 3e-10
Identities = 62/269 (23%), Positives = 76/269 (28%), Gaps = 6/269 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L G G +G +G G G GPPG G PG GLPG
Sbjct: 674 LPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPG 733
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G G PG G + G+PG +GPPG
Sbjct: 734 PQGAIGPPGEKGPLGKPGLPGMPGADGP---------------------PGHPGKEGPPG 772
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGN------RGEXXXXXXXXXXX 522
G G G + + G +G+
Sbjct: 773 EKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIG 832
Query: 523 XXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
+G +G G GD GP G G KG G+ GLPG G G +
Sbjct: 833 PPGPRGEDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPG 892
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
K G GQ G GP G R
Sbjct: 893 ANGEKGGRGTPGKPGPRGQRGPTGPRGER 921
Score = 63.2 bits (152), Expect = 5e-10
Identities = 64/268 (23%), Positives = 78/268 (29%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQG---------PVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP 159
GP+GD+G G G+ G SGPPG G+
Sbjct: 625 GPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGIPGDDGERGDDGEV--------------- 669
Query: 160 GFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP 339
G GLPG G RGL G G + GNP
Sbjct: 670 GPRGLPGEPGPRGLLGPKG---PPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNP 726
Query: 340 GSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXX 519
G+ G PG G G GE+ G +G
Sbjct: 727 GAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPI 786
Query: 520 XXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXX 699
GIRG KG G+KG G PG KG G++G G G G +
Sbjct: 787 GYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPR--------- 837
Query: 700 XXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ G G PG +GP G
Sbjct: 838 ---GEDGPEGPKGRGGPNGDPGPLGPTG 862
Score = 62.4 bits (150), Expect = 8e-10
Identities = 62/262 (23%), Positives = 77/262 (29%), Gaps = 3/262 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G++G G G +GA+GPPG G +PG +G PG
Sbjct: 1303 GPKGERGEKGEAGPSGAAGPPGPKGPPGDDGPKG---------------SPGPVGFPGDP 1347
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG +DG PG G G
Sbjct: 1348 GPPGEPGPAG------------------------------------QDGPPGDKGDDGEP 1371
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
GQ G G + G +GE
Sbjct: 1372 GQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAP 1431
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHN---GLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
G G +G PG G +GLPG G + G G PGL G GD
Sbjct: 1432 GKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLI 1491
Query: 718 XXXXXXXKDGRTGQPGAVGPAG 783
+ G G PG G +G
Sbjct: 1492 GPPGEQGEKGDRGLPGPQGSSG 1513
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,337,208
Number of extensions: 653593
Number of successful extensions: 19090
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 8134
Number of HSP's successfully gapped: 381
Length of query: 447
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 342
Effective length of database: 12,463,779
Effective search space: 4262612418
Effective search space used: 4262612418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012839
(1343 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000080.2| collagen alpha-2(I) chain precursor [Homo sapie... 445 e-125
Alignment gi|NP_001835.3| collagen alpha-1(II) chain isoform 1 precursor ... 259 4e-76
Alignment gi|NP_149162.2| collagen alpha-1(II) chain isoform 2 precursor ... 259 4e-76
Alignment gi|NP_000079.2| collagen alpha-1(I) chain preproprotein [Homo s... 244 8e-68
Alignment gi|NP_000384.2| collagen alpha-2(V) chain preproprotein [Homo s... 202 4e-52
Alignment gi|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo... 202 8e-52
Alignment gi|NP_001177638.1| collagen alpha-1(XI) chain isoform E preprop... 139 6e-33
Alignment gi|NP_542197.3| collagen alpha-1(XI) chain isoform C preproprot... 139 6e-33
Alignment gi|NP_542196.2| collagen alpha-1(XI) chain isoform B preproprot... 139 6e-33
Alignment gi|NP_001845.3| collagen alpha-1(XI) chain isoform A preproprot... 139 6e-33
>ref|NP_000080.2| collagen alpha-2(I) chain precursor [Homo sapiens].
Length = 1366
Score = 445 bits (1145), Expect = e-125
Identities = 232/406 (57%), Positives = 240/406 (59%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRGPRGDQGPVGRTGE GA GPPGFAGEK APG LGLPG
Sbjct: 818 LRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPG 877
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
SRGERGLPGVAG+V RDGNPG+DGPPG
Sbjct: 878 SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPG 937
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
RDGQ GHKGER KHGNRGE
Sbjct: 938 RDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRG 997
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
QGIRG+KGEPG+KGPRGLPGLKGHNGLQGLPG+AGHHGDQ
Sbjct: 998 PSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAG 1057
Query: 721 XXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGYEGDFY 900
KDGRTG PG VGPAGIR YDFGY+GDFY
Sbjct: 1058 PSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFY 1117
Query: 901 RADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1080
RADQPRS PSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY
Sbjct: 1118 RADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGY 1177
Query: 1081 YWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAKTGTETPKSR 1218
YWIDPNQGCTMDAIKVYCDFSTGETCIRA P NIPAK + K +
Sbjct: 1178 YWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPAKNWYRSSKDK 1223
Score = 72.4 bits (176), Expect = 9e-13
Identities = 71/276 (25%), Positives = 84/276 (30%), Gaps = 15/276 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGF---------------AGEKXXXXXXXXXXXXXXXXX 138
RG G GPVG G G++GPPGF AG
Sbjct: 234 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGP 293
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
PG GL G++G GLPGVAG+
Sbjct: 294 VGPPGNPGANGLTGAKGAAGLPGVAGA--------------------------------- 320
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G PG G PG G AG G R G++GE
Sbjct: 321 ---PGLPGPRGIPGPVGAAGATGARGLVGEPGPA------------------GSKGESGN 359
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
+G RG GE G GP G PGL+G G +GLPG G G
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAG---V 416
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
GR G+PG +GP G+
Sbjct: 417 MGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGL 452
Score = 63.2 bits (152), Expect = 5e-10
Identities = 66/263 (25%), Positives = 75/263 (28%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQG---PVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
RGP G+ G P G G G SGPPG G K G G+
Sbjct: 591 RGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGI 650
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG +GE+G PG+ G + GNPG DG
Sbjct: 651 PGGKGEKGEPGLRGEI------------------------------------GNPGRDGA 674
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G G G G G+RGE
Sbjct: 675 RGAPGAVGAPGPAGAT------------------------GDRGEAGAAGPAGPA----- 705
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G RG GE G+ GP G G G G G PG G G +
Sbjct: 706 -------GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVV----- 753
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G TG GA GPAG
Sbjct: 754 ----------GPTGPVGAAGPAG 766
Score = 62.4 bits (150), Expect = 9e-10
Identities = 67/262 (25%), Positives = 75/262 (28%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG RG GP GR GE G +GPPG G PG +GL G
Sbjct: 41 RGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGL--GPGPMGLMGP 98
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RG G G G G G GPPG+
Sbjct: 99 RGPPGAAGAPGPQGFQGPAGEPGEPGQTGPA------------------GARGPAGPPGK 140
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ GH G K G GE
Sbjct: 141 AGEDGHPG---------------------------KPGRPGERGVVGPQGARGFPGTPGL 173
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
+GIRG G G KG G PG+KG G G G G G +
Sbjct: 174 PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGL--------------- 218
Query: 724 XXXXXKDGRTGQPGAVGPAGIR 789
G G+ GA GPAG R
Sbjct: 219 ------PGERGRVGAPGPAGAR 234
Score = 61.2 bits (147), Expect = 2e-09
Identities = 62/259 (23%), Positives = 77/259 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G +G G G +G PG G+K PG G+ G +
Sbjct: 484 GARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 543
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE+G PG G + G G G G
Sbjct: 544 GEQGPPGPPG---------------------FQGLPGPSGPAGEVGKPGERGLHGEFGLP 582
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +GER GN+GE
Sbjct: 583 GPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA--------- 633
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G G PG++G G+PG KG G GL G G+ G
Sbjct: 634 ---GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPG-------------------- 670
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG G PGAVG G
Sbjct: 671 ----RDGARGAPGAVGAPG 685
Score = 52.4 bits (124), Expect = 1e-06
Identities = 67/289 (23%), Positives = 77/289 (26%), Gaps = 27/289 (9%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFA------------------------GEKXXXXXXX 108
LRG G+ G G G GA G PG A GE+
Sbjct: 662 LRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAG 721
Query: 109 XXXXXXXXXXXXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXX 288
A G G G +GE G+ G G V
Sbjct: 722 PNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGG 781
Query: 289 XXXXXXXXXXXXRDGNPGS---DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXX 459
R G PG GPPG G AG +G R
Sbjct: 782 PPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR---------------------- 819
Query: 460 XXXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQG 639
G RG+ G GEKG G+ G G PG G GL G
Sbjct: 820 -----GPRGD------QGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Query: 640 LPGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGI 786
PG+ G G + G G PGAVG G+
Sbjct: 869 APGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGV 917
Score = 50.1 bits (118), Expect = 5e-06
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 1182 PSKNWYRNSKVKKHVWVXETIHGGTHLKYIWKELPQGNGYT-TCFMRLLA 1328
P+KNWYR+SK KKHVW+ ETI+ G+ +Y + + T FMRLLA
Sbjct: 1212 PAKNWYRSSKDKKHVWLGETINAGSQFEYNVEGVTSKEMATQLAFMRLLA 1261
>ref|NP_001835.3| collagen alpha-1(II) chain isoform 1 precursor [Homo sapiens].
Length = 1487
Score = 259 bits (663), Expect(2) = 4e-76
Identities = 156/408 (38%), Positives = 180/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR GE G GP G GEK G +GLPG
Sbjct: 929 KGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 988
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 1048
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 1049 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1109 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1168
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG-YEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1169 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGP 1228
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RADQ LR D EVDATLKSLNNQIE++ +PEGSRKNPARTCRDL
Sbjct: 1229 REKGPDPLQYMRADQAAG--GLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDL 1286
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P N+P K
Sbjct: 1287 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKK 1334
Score = 45.1 bits (105), Expect(2) = 4e-76
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ETI+GG H Y L P F+RLL+T
Sbjct: 1332 PKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLST 1383
Score = 85.5 bits (210), Expect = 1e-16
Identities = 69/265 (26%), Positives = 81/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG AGE+ G+ GL G++
Sbjct: 240 GPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 359
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G G
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG G+Q
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG VGP G
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIG 504
Score = 77.0 bits (188), Expect = 4e-14
Identities = 68/263 (25%), Positives = 82/263 (31%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QGP G G G+ GP G +G PG G+PG+
Sbjct: 383 RGPEGAQGPRGEPGTPGSPGPAGASGN------------------------PGTDGIPGA 418
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD---GNPGSDGP 354
+G G PG+AG+ G PG GP
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G G AG +G+R GNRG
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP------GNRG---------------- 516
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 517 --FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARG 597
Score = 75.5 bits (184), Expect = 1e-13
Identities = 67/261 (25%), Positives = 81/261 (31%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G GPPG G + PG +G PG +
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQ---------------------PGVMGFPGPK 608
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG +DG G+ GPPG
Sbjct: 609 GANGEPGKAGE---------------------KGLPGAPGLRGLPGKDGETGAAGPPGPA 647
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +GE+ G GE
Sbjct: 648 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV------------ 695
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RGE+G PG++G G GL+G GL G PG G G
Sbjct: 696 ---GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG-------------------- 732
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
G G PGA GP G++
Sbjct: 733 ----ASGPAGPPGAQGPPGLQ 749
Score = 73.9 bits (180), Expect = 3e-13
Identities = 71/276 (25%), Positives = 83/276 (30%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G GE G GPPG AG PG G PG
Sbjct: 787 LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 846
Query: 181 SRGERG---------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-- 327
++GE+G PG G R
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Query: 328 ----DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
+GNPG GPPG G+ G KG R G +GE
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP------GEKGEPG 960
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 675
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 961 DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--- 1017
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ GR G PGA GP G
Sbjct: 1018 ------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Score = 67.8 bits (164), Expect = 2e-11
Identities = 63/264 (23%), Positives = 73/264 (27%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 199 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERG PG G+ G+PG +G
Sbjct: 259 KPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 318
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER GN G+
Sbjct: 319 SPGPMGPRGLPGER---------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 363
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE G G +GP G G +G G G PG AG G+
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 423
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG G G
Sbjct: 424 APGIAGAPGFPGPRGPPGPQGATG 447
Score = 67.0 bits (162), Expect = 4e-11
Identities = 69/273 (25%), Positives = 78/273 (28%), Gaps = 12/273 (4%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+GPRG G G G GASGP G G A G GL G
Sbjct: 715 LQGPRGLPGTPGTDGPKGASGPAGPPG------------------------AQGPPGLQG 750
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG G+AG +G G GPPG
Sbjct: 751 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPG 810
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G AG +G G +GE
Sbjct: 811 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE------------AGQKG 858
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G G PG +GP G+ G KG G QG PG G G
Sbjct: 859 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 918
Query: 721 XXXXXXKD------------GRTGQPGAVGPAG 783
KD GR G+PG GPAG
Sbjct: 919 PPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG 951
Score = 62.8 bits (151), Expect = 7e-10
Identities = 63/259 (24%), Positives = 70/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G G G GEK PG G PG
Sbjct: 117 GPKGPPGPQGPAGEQGPRGDRGDKGEK------------GAPGPRGRDGEPGTPGNPGPP 164
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G G+ GP G
Sbjct: 165 GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 224
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G GE K G GE
Sbjct: 225 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 284
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG G G KG G PG+KG +G G G G G +
Sbjct: 285 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 344
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+ G G PG VGPAG
Sbjct: 345 GNDGQPGPAGPPGPVGPAG 363
Score = 62.4 bits (150), Expect = 9e-10
Identities = 66/266 (24%), Positives = 76/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGF------AGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RG G GP+G GE GA G GF AG K PG
Sbjct: 494 RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 553
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
GLPG+RG G PG AG + G G
Sbjct: 554 PGLPGARGLTGRPGDAGP---------QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 604
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
GP G +G+ G GE+ K G G
Sbjct: 605 PGPKGANGEPGKAGEK------------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE 652
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G +G G PG G G PG +G G G PGL G G++
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGA 712
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G GA GPAG
Sbjct: 713 QGLQGPRGLPGTPGTDGPKGASGPAG 738
>ref|NP_149162.2| collagen alpha-1(II) chain isoform 2 precursor [Homo sapiens].
Length = 1418
Score = 259 bits (663), Expect(2) = 4e-76
Identities = 156/408 (38%), Positives = 180/408 (44%), Gaps = 12/408 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+G RGD GP GR GE G GP G GEK G +GLPG
Sbjct: 860 KGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 919
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G+PG+DGPPGR
Sbjct: 920 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 979
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG AG KG+R K G+RGE
Sbjct: 980 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1039
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G+ G RGL G +G GLQGLPG G GDQ
Sbjct: 1040 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1099
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFG-YEG--- 891
KDG G PG +GP G R D + G
Sbjct: 1100 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGP 1159
Query: 892 --------DFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDL 1047
+ RADQ LR D EVDATLKSLNNQIE++ +PEGSRKNPARTCRDL
Sbjct: 1160 REKGPDPLQYMRADQAAG--GLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDL 1217
Query: 1048 RLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
+L HPEW SG YWIDPNQGCT+DA+KV+C+ TGETC+ P N+P K
Sbjct: 1218 KLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANVPKK 1265
Score = 45.1 bits (105), Expect(2) = 4e-76
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 1182 PSKNWYRN-SKVKKHVWVXETIHGGTHLKYIWKEL-PQGNGYTTCFMRLLAT 1331
P KNW+ + SK KKH+W ETI+GG H Y L P F+RLL+T
Sbjct: 1263 PKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLST 1314
Score = 85.5 bits (210), Expect = 1e-16
Identities = 69/265 (26%), Positives = 81/265 (30%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG GP G+ G+ G +G PG AGE+ G+ GL G++
Sbjct: 171 GPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 230
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GE G PGV G DG PG GPPG
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 290
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G + G G
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLK------GHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G G PG GPRG PG + G G G PG+AG G+Q
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G+PG VGP G
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIG 435
Score = 77.0 bits (188), Expect = 4e-14
Identities = 68/263 (25%), Positives = 82/263 (31%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RGP G QGP G G G+ GP G +G PG G+PG+
Sbjct: 314 RGPEGAQGPRGEPGTPGSPGPAGASGN------------------------PGTDGIPGA 349
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD---GNPGSDGP 354
+G G PG+AG+ G PG GP
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
G G AG +G+R GNRG
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP------GNRG---------------- 447
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G+ G KG PG++GP GL G KG NG G PG G G +
Sbjct: 448 --FPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 505
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
+DGR G PG G G
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARG 528
Score = 75.5 bits (184), Expect = 1e-13
Identities = 67/261 (25%), Positives = 81/261 (31%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G GPPG G + PG +G PG +
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQ---------------------PGVMGFPGPK 539
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG AG +DG G+ GPPG
Sbjct: 540 GANGEPGKAGE---------------------KGLPGAPGLRGLPGKDGETGAAGPPGPA 578
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG +GE+ G GE
Sbjct: 579 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLV------------ 626
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RGE+G PG++G G GL+G GL G PG G G
Sbjct: 627 ---GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG-------------------- 663
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
G G PGA GP G++
Sbjct: 664 ----ASGPAGPPGAQGPPGLQ 680
Score = 73.9 bits (180), Expect = 3e-13
Identities = 71/276 (25%), Positives = 83/276 (30%), Gaps = 15/276 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G GP G GE G GPPG AG PG G PG
Sbjct: 718 LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 777
Query: 181 SRGERG---------LPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-- 327
++GE+G PG G R
Sbjct: 778 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 837
Query: 328 ----DGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXX 495
+GNPG GPPG G+ G KG R G +GE
Sbjct: 838 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP------GEKGEPG 891
Query: 496 XXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQX 675
+GI G G+ G++G GLPG G G QG PG +G G
Sbjct: 892 DDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRG--- 948
Query: 676 XXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ GR G PGA GP G
Sbjct: 949 ------PPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Score = 67.8 bits (164), Expect = 2e-11
Identities = 63/264 (23%), Positives = 73/264 (27%), Gaps = 3/264 (1%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLG 171
++GP G GP G G GA GP GF G P G G
Sbjct: 130 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 189
Query: 172 LPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG 351
PG GERG PG G+ G+PG +G
Sbjct: 190 KPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 249
Query: 352 PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXX 531
PG G G GER GN G+
Sbjct: 250 SPGPMGPRGLPGER---------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 294
Query: 532 XXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXX 711
G +GE G G +GP G G +G G G PG AG G+
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 354
Query: 712 XXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG G G
Sbjct: 355 APGIAGAPGFPGPRGPPGPQGATG 378
Score = 67.0 bits (162), Expect = 4e-11
Identities = 69/273 (25%), Positives = 78/273 (28%), Gaps = 12/273 (4%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+GPRG G G G GASGP G G A G GL G
Sbjct: 646 LQGPRGLPGTPGTDGPKGASGPAGPPG------------------------AQGPPGLQG 681
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG G+AG +G G GPPG
Sbjct: 682 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPG 741
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G AG +G G +GE
Sbjct: 742 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE------------AGQKG 789
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G G PG +GP G+ G KG G QG PG G G
Sbjct: 790 DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 849
Query: 721 XXXXXXKD------------GRTGQPGAVGPAG 783
KD GR G+PG GPAG
Sbjct: 850 PPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG 882
Score = 62.8 bits (151), Expect = 7e-10
Identities = 63/259 (24%), Positives = 70/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G GP G GE G G G GEK PG G PG
Sbjct: 48 GPKGPPGPQGPAGEQGPRGDRGDKGEK------------GAPGPRGRDGEPGTPGNPGPP 95
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G G G+ GP G
Sbjct: 96 GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQ 155
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G GE K G GE
Sbjct: 156 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 215
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G RG G G KG G PG+KG +G G G G G +
Sbjct: 216 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 275
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+ G G PG VGPAG
Sbjct: 276 GNDGQPGPAGPPGPVGPAG 294
Score = 62.4 bits (150), Expect = 9e-10
Identities = 66/266 (24%), Positives = 76/266 (28%), Gaps = 6/266 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGF------AGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
RG G GP+G GE GA G GF AG K PG
Sbjct: 425 RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE 484
Query: 166 LGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGS 345
GLPG+RG G PG AG + G G
Sbjct: 485 PGLPGARGLTGRPGDAGP---------QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 535
Query: 346 DGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXX 525
GP G +G+ G GE+ K G G
Sbjct: 536 PGPKGANGEPGKAGEK------------GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE 583
Query: 526 XXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXX 705
G +G G PG G G PG +G G G PGL G G++
Sbjct: 584 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGA 643
Query: 706 XXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G GA GPAG
Sbjct: 644 QGLQGPRGLPGTPGTDGPKGASGPAG 669
>ref|NP_000079.2| collagen alpha-1(I) chain preproprotein [Homo sapiens].
Length = 1464
Score = 244 bits (622), Expect(2) = 8e-68
Identities = 142/397 (35%), Positives = 174/397 (43%), Gaps = 11/397 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GPRG+ GP GR GE G GPPG AGEK G +GLPG
Sbjct: 907 KGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 966
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
RGERG PG+ G R+G PG++G PGR
Sbjct: 967 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
DG G KG+R K G+RGE
Sbjct: 1027 DGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP 1086
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXX 723
QG RG+KGE G++G RG+ G +G +GLQG PG G G+Q
Sbjct: 1087 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGS 1146
Query: 724 XXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYDFGY------ 885
KDG G PG +GP G R +DF +
Sbjct: 1147 AGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQ 1206
Query: 886 -----EGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLR 1050
G +YRAD +R +D EVD TLKSL+ QIE + +PEGSRKNPARTCRDL+
Sbjct: 1207 EKAHDGGRYYRADDANV---VRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLK 1263
Query: 1051 LSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCI 1161
+ H +W SG YWIDPNQGC +DAIKV+C+ TGETC+
Sbjct: 1264 MCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCV 1300
Score = 33.1 bits (74), Expect(2) = 8e-68
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Frame = +3
Query: 1152 NLHSSXTLKHPS------KNWY--RNSKVKKHVWVXETIHGGTHLKYIWK-ELPQGNGYT 1304
N+ + T +P+ KNWY +N K K+HVW E++ G +Y + P
Sbjct: 1292 NMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQ 1351
Query: 1305 TCFMRLLAT 1331
F+RL++T
Sbjct: 1352 LTFLRLMST 1360
Score = 76.3 bits (186), Expect = 6e-14
Identities = 68/259 (26%), Positives = 73/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G GP G G+ GA G PG AG K APG G GS
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA 868
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G G G+ G PG GPPG
Sbjct: 869 GPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG KG G RGE
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE---RGFPGLPGPSGEPGKQ 985
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G GE+G PG GP GL G G +G +G PG G G
Sbjct: 986 GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG---RDGSPGAKGDRGETGPA 1042
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G PG VGPAG
Sbjct: 1043 GPPGAPGAPGAPGPVGPAG 1061
Score = 71.2 bits (173), Expect = 2e-12
Identities = 64/261 (24%), Positives = 79/261 (30%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L G +G G G G G +GPPG AG+ G G PG
Sbjct: 534 LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 593
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
GERG+PG G+V G PG GPPG
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 653
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G +G + G GE
Sbjct: 654 EAGKPGEQG------------VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG 701
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G +G+ G PG G +G PGL+G G +G GL G GD+
Sbjct: 702 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR---------GDAGPKG 752
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
KDG G G +GP G
Sbjct: 753 ADGSPGKDGVRGLTGPIGPPG 773
Score = 66.2 bits (160), Expect = 6e-11
Identities = 67/269 (24%), Positives = 79/269 (29%), Gaps = 6/269 (2%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
+ GP+GD GP G G G G G G+ PG G PG
Sbjct: 110 VEGPKGDTGPRGPRGPAGPPGRDGIPGQ------------------------PGLPGPPG 145
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G G PG+ G+ G PG+ GP G
Sbjct: 146 PPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP-----GPPGAPGPQG 200
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE K+G+ GE
Sbjct: 201 FQGPPGEPGE---------PGASGPMGPRGPPGPPGKNGDDGEAGKP------------- 238
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPG------LKGHNGLQGLPGLAGHHGDQXXXXXXXXXX 702
G GE+G PG +G RGLPG +KGH G GL G G G
Sbjct: 239 -----GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG 293
Query: 703 XXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PGA GPAG R
Sbjct: 294 ENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Score = 63.9 bits (154), Expect = 3e-10
Identities = 70/280 (25%), Positives = 79/280 (28%), Gaps = 21/280 (7%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG QGP G G GA+G PG G K APG G+PG R
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG---------APGLQGMPGER 733
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDG----- 351
G GLPG G DG+PG DG
Sbjct: 734 GAAGLPGPKGD---------------------------RGDAGPKGADGSPGKDGVRGLT 766
Query: 352 -PPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
P G G AG G++ G+RGE
Sbjct: 767 GPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP---------GDRGEPGPPGPAGFAGPP 817
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPR---------------GLPGLKGHNGLQGLPGLAGHH 663
+G G+ G GD GP G PG KG G G PG G
Sbjct: 818 GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFP 877
Query: 664 GDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G K+G G G GPAG
Sbjct: 878 GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAG 917
Score = 63.2 bits (152), Expect = 5e-10
Identities = 67/263 (25%), Positives = 78/263 (29%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
+GPRG +GP G GE G GP G AG PG G PG+
Sbjct: 358 QGPRGSEGPQGVRGEPGPPGPAGAAGPAGN---------------------PGADGQPGA 396
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
+G G PG+AG+ GN G G PG
Sbjct: 397 KGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPK---------------GNSGEPGAPGS 441
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G G KGE K G RGE
Sbjct: 442 KGDTGAKGE---------PGPVGVQGPPGPAGEEGKRGARGEPGPTGLP----------- 481
Query: 544 XXXQGIRGEKGEPGDK---GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
G GE+G PG + G G+ G KG G +G PG AG G
Sbjct: 482 ----GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G G+ G GPAG
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAG 560
Score = 61.6 bits (148), Expect = 2e-09
Identities = 59/263 (22%), Positives = 74/263 (28%), Gaps = 3/263 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTG---ETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL 174
RGPRG GP GR G + G GPPG G + G + +
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEK--STGGISV 177
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG G G G+ G ++G+ G G
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGK 237
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PGR G+ G G + G+ G
Sbjct: 238 PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGA 297
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G+ GE+G PG GP G G G G G PG G G
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGP 357
Query: 715 XXXXXXXXKDGRTGQPGAVGPAG 783
G G+PG GPAG
Sbjct: 358 QGPRGSEGPQGVRGEPGPPGPAG 380
>ref|NP_000384.2| collagen alpha-2(V) chain preproprotein [Homo sapiens].
Length = 1499
Score = 202 bits (515), Expect = 4e-52
Identities = 130/407 (31%), Positives = 166/407 (40%), Gaps = 11/407 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RGD G GR G+ G +GPPG G+K G +G+PG R
Sbjct: 942 GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQR 1001
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERG+PG+ G +G G+DG PGRD
Sbjct: 1002 GERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1061
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G+R G RG+
Sbjct: 1062 GAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLP 1121
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KG+ GD+G RG G +G GLQGLPG G +G+Q
Sbjct: 1122 GPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPV 1181
Query: 727 XXXXKDGRTGQPGAVGPAGIR----------XXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
K+G G G +GP G+R YD
Sbjct: 1182 GPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYD 1241
Query: 877 FGYEGDFYRADQPRSPPSLRPK-DYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRL 1053
+ ++ P + K D V ATLKSL++QIET+ +P+GS+K+PARTC DL+L
Sbjct: 1242 ESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKL 1301
Query: 1054 SHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAKT 1194
H SG YWIDPNQG DAIKVYC+ TGETCI A P ++P KT
Sbjct: 1302 CHSAKQSGEYWIDPNQGSVEDAIKVYCNMETGETCISANPSSVPRKT 1348
Score = 75.9 bits (185), Expect = 8e-14
Identities = 64/261 (24%), Positives = 74/261 (28%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
++GP G GP+G GE G GPPG G + PG +GLPG
Sbjct: 580 VQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQ---------------------PGSMGLPG 618
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G G PG G G PG G G
Sbjct: 619 PKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQG 678
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G G GE G RGE
Sbjct: 679 LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHG 738
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G G G PGD GP GL G+ G G+ G PG G G
Sbjct: 739 PDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG------------GIGEKG 786
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG +GP G
Sbjct: 787 AEGTAGNDGARGLPGPLGPPG 807
Score = 73.2 bits (178), Expect = 5e-13
Identities = 64/268 (23%), Positives = 78/268 (29%), Gaps = 9/268 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G +G+ GP G G G GP G GE+ G LG+PGS
Sbjct: 318 GSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSS 377
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG+ G DG PG+ GP G
Sbjct: 378 GFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSP 437
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G +G G G +GE
Sbjct: 438 GTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPP 497
Query: 547 XXQGIRGEKGEPGDKGP------RGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
+G RG +G+PG GP RG PG +G G GLPG G G++
Sbjct: 498 GEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQ 557
Query: 709 XXXXXXXXXXKDGR---TGQPGAVGPAG 783
G TG PG GP G
Sbjct: 558 GDPGRPGEPGLPGARGLTGNPGVQGPEG 585
Score = 72.4 bits (176), Expect = 9e-13
Identities = 68/270 (25%), Positives = 80/270 (29%), Gaps = 9/270 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GPRG++G G GE G +G PG G PG G+PG R
Sbjct: 708 GPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGER 767
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G DG G GP G
Sbjct: 768 GIAGTPGPKGD---------------------RGGIGEKGAEGTAGNDGARGLPGPLGPP 806
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG GE+ GN G
Sbjct: 807 GPAGPTGEK------------GEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPD 854
Query: 547 XXQGIRGEKGEPGDK------GPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G++GE GEPG K GP+GL G G +G G+PGL G G Q
Sbjct: 855 GQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSA 914
Query: 709 XXXXXXXXXXKDGRT---GQPGAVGPAGIR 789
G G+PG GP G+R
Sbjct: 915 GRVGPPGPAGAPGPAGPLGEPGKEGPPGLR 944
Score = 70.5 bits (171), Expect = 3e-12
Identities = 69/277 (24%), Positives = 81/277 (29%), Gaps = 15/277 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------GFAGEKXXXXXXXXXXXXXXXXXXXXXXA 156
RGPRGD G VG G G G P G G K
Sbjct: 503 RGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGR 562
Query: 157 PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
PG GLPG+RG G PGV G G+
Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 622
Query: 337 PGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXX 516
G G PG G AG G+R + G G
Sbjct: 623 SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGP 682
Query: 517 XXXXXXXXXXXXQGIRGEKGEPGDKGP---RGLPGLKGHNGLQGLP---GLAGHHGDQXX 678
QG+ G+ G G GP RG PG +G G+ GLP G+AG HG
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPD-- 740
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G +G PG GP G++
Sbjct: 741 ----------------GPKGSPGPSGTPGDTGPPGLQ 761
Score = 65.1 bits (157), Expect = 1e-10
Identities = 65/274 (23%), Positives = 74/274 (27%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G GP+G G G G PG GE APG GL G R
Sbjct: 243 GDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHR 302
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNP---GSDGPP 357
G +GL G G V G P G+ G P
Sbjct: 303 GHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMP 362
Query: 358 GRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXX 537
G+ G G G G RGE
Sbjct: 363 GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAI 422
Query: 538 XXXXXQGIR------GEKGEPGDKGPRGLPGLKGHNGLQGL------PGLAGHHGDQXXX 681
G + G G PG GP G PG +G G QG+ PG+ G G+
Sbjct: 423 GTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPK 482
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
K G G PG VGP G
Sbjct: 483 GEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPG 516
Score = 64.3 bits (155), Expect = 2e-10
Identities = 67/264 (25%), Positives = 77/264 (29%), Gaps = 3/264 (1%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG +GP G+ GETG GP G G +PG G PGS
Sbjct: 393 GARGPEGPQGQRGETGPPGPVGSPG------LPGAIGTDGTPGAKGPTGSPGTSGPPGSA 446
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG GS G PG G PG
Sbjct: 447 GPPGSPGPQGSTGPQGIR------------------------------GQPGDPGVPGFK 476
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G+AG KGE G G
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLP 536
Query: 547 XXQGIRGEKGEPGDKGPRGL---PGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXX 717
+G +GE+G G GP+G PG G GL G GL G+ G Q
Sbjct: 537 GPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAP--- 593
Query: 718 XXXXXXXKDGRTGQPGAVGPAGIR 789
G G+PG G GIR
Sbjct: 594 ---------GEDGRPGPPGSIGIR 608
Score = 62.0 bits (149), Expect = 1e-09
Identities = 64/259 (24%), Positives = 75/259 (28%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G +GP G G+ G +GP G GE PG +G GSR
Sbjct: 216 GPVGPRGPQGLQGQQGGAGPTGPPGEPGD---------------------PGPMGPIGSR 254
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G G PG G DG PG +G PG
Sbjct: 255 GPEGPPGKPG------------------------------------EDGEPGRNGNPGEV 278
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G AG G R G +GE
Sbjct: 279 GFAGSPGARGFPGAPGLPGLKGHRGHKGL------EGPKGEVGAPGSKGEAGPTGPMGAM 332
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G RG GE G GP+G PG +G +G+ G PG G G
Sbjct: 333 GPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPT 392
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+G GQ G GP G
Sbjct: 393 GARGPEGPQGQRGETGPPG 411
Score = 53.1 bits (126), Expect = 6e-07
Identities = 56/235 (23%), Positives = 65/235 (27%), Gaps = 12/235 (5%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GP G G VG TG TG GPPG G G +G G
Sbjct: 1009 LPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERG 1068
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
RG+ G G+ GS + G PG GP G
Sbjct: 1069 DRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRG 1128
Query: 361 RDGQ------AGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXX 522
G G KG R G RG
Sbjct: 1129 DKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEG 1188
Query: 523 XXXXXXXXXXQGIRGEKGE------PGDKGPRGLPGLKGHNGLQGLPGLAGHHGD 669
G+RG GE PG+ GP G PG GH L + GH+ +
Sbjct: 1189 NPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHL-TAALGDIMGHYDE 1242
>ref|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo sapiens].
Length = 1466
Score = 202 bits (513), Expect = 8e-52
Identities = 136/411 (33%), Positives = 161/411 (39%), Gaps = 16/411 (3%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+GD G G G GA GPPG G A G G PG
Sbjct: 921 GPKGDAGQPGEKGSPGAQGPPGAPGP---------------LGIAGITGARGLAGPPGMP 965
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG PG G RDGNPGSDG PGRD
Sbjct: 966 GPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1025
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG+R K G+RGE
Sbjct: 1026 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1085
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG RG+KGE G++G G+ G +G G G PG G G Q
Sbjct: 1086 GPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPS 1145
Query: 727 XXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXX------------ 870
KDG +G PG +GP G R
Sbjct: 1146 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAI 1205
Query: 871 YDFGYE--GDF--YRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTC 1038
G E G F Y D+P + E+ +LKS+N QIE+L++P+GSRKNPAR C
Sbjct: 1206 AGIGGEKAGGFAPYYGDEPMD---FKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNC 1262
Query: 1039 RDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAXP*NIPAK 1191
RDL+ HPE SG YW+DPNQGC +DAIKV+C+ TGETCI A P N+P K
Sbjct: 1263 RDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCISANPLNVPRK 1313
Score = 67.8 bits (164), Expect = 2e-11
Identities = 68/273 (24%), Positives = 77/273 (28%), Gaps = 12/273 (4%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
LRG G GP G G G GPPG AG PG G+PG
Sbjct: 694 LRGGAGPPGPEGGKGAAGPPGPPGAAG------------------------TPGLQGMPG 729
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
RG G PG G G G+ G PG
Sbjct: 730 ERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG 789
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHG---NRGEXXXXXXXXXXXXXX 531
G G GER + G +GE
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG 849
Query: 532 XXXXXXXQGIRGEKGEPGD------KGPRGLPGLKGHNGLQGLPGLA---GHHGDQXXXX 684
QG++GE+G PG G RGLPG G NG G PG + G G
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAG 909
Query: 685 XXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
+ G G PGA GP G
Sbjct: 910 NTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942
Score = 66.6 bits (161), Expect = 5e-11
Identities = 65/271 (23%), Positives = 75/271 (27%), Gaps = 11/271 (4%)
Frame = +1
Query: 4 RGPRGDQGPVG---RTGETGASGPPGFAG--------EKXXXXXXXXXXXXXXXXXXXXX 150
+GP+GD GP G R G+ G G PG G E
Sbjct: 105 QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGV 164
Query: 151 XAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRD 330
G G PG G G PG G+
Sbjct: 165 AVGGLAGYPGPAGPPGPPGPPGT------------------------------------S 188
Query: 331 GNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXX 510
G+PGS G PG G G G+ + G GE
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPP 248
Query: 511 XXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXX 690
+G RG G G+KG G PGLKG NGL G G G G +
Sbjct: 249 GIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGER 308
Query: 691 XXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G GQPG GP G
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Score = 65.5 bits (158), Expect = 1e-10
Identities = 60/265 (22%), Positives = 76/265 (28%), Gaps = 6/265 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGL---P 177
G RG+ GP G G G GPPG G APG +G P
Sbjct: 366 GQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG---------APGLMGARGPP 416
Query: 178 GSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPG---SD 348
G G G PG+ G +DG+PG ++
Sbjct: 417 GPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN 476
Query: 349 GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
G PG G+ G G R G GE
Sbjct: 477 GLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMR 536
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
G G+ G PG +G G PG G +G +G PG+ G G +
Sbjct: 537 GMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGER 596
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAG 783
G+ G+ G GP G
Sbjct: 597 GGPGGPGPQGPPGKNGETGPQGPPG 621
Score = 64.3 bits (155), Expect = 2e-10
Identities = 64/281 (22%), Positives = 76/281 (27%), Gaps = 21/281 (7%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP------------------PGFAGEKXXXXXXXXXXXXXX 129
+GP G GP G G+TG GP PG G K
Sbjct: 617 QGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGD 676
Query: 130 XXXXXXXXAPGFLGLPGSRGERGLPGV---AGSVXXXXXXXXXXXXXXXXXXXXXXXXXX 300
PG G PG RG G PG G+
Sbjct: 677 AGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGS 736
Query: 301 XXXXXXXXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGN 480
G PG+DG PG+DG G G G+
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS 796
Query: 481 RGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGH 660
GE G +GE+G PG+KG G PG+ G G G G G
Sbjct: 797 PGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
Query: 661 HGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G + G G PG GP+G
Sbjct: 857 QGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Score = 63.9 bits (154), Expect = 3e-10
Identities = 67/287 (23%), Positives = 80/287 (27%), Gaps = 27/287 (9%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGP------PGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGF 165
+GP G G G G G GP PG G + G
Sbjct: 380 QGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGA 439
Query: 166 LGLPGSRGER---GLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGN 336
G PG RGER G+PGV G+ +G
Sbjct: 440 KGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGI 499
Query: 337 PGSDGP------------------PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXX 462
PG GP PGRDG G G R
Sbjct: 500 PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGE 559
Query: 463 XXKHGNRGEXXXXXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGL 642
+ G G G GE+G PG GP+G PG G G QG
Sbjct: 560 SGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGP 619
Query: 643 PGLAGHHGDQXXXXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
PG G GD+ ++G+ G+PG G AG
Sbjct: 620 PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Score = 62.8 bits (151), Expect = 7e-10
Identities = 61/259 (23%), Positives = 71/259 (27%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G G++GP G G G +GP G AGE PG G+PG
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRGAAGE------------------------PGRDGVPGGP 533
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G RG+PG G R G PG GP G+
Sbjct: 534 GMRGMPGSPGG------------------PGSDGKPGPPGSQGESGRPGPPGPSGPRGQP 575
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G G + K+G G
Sbjct: 576 GVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
QG++G G G G G PG G G G PG G GD
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Query: 727 XXXXKDGRTGQPGAVGPAG 783
G G GA GP G
Sbjct: 696 GGAGPPGPEGGKGAAGPPG 714
Score = 62.0 bits (149), Expect = 1e-09
Identities = 62/267 (23%), Positives = 77/267 (28%), Gaps = 6/267 (2%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
G RG+ G G G+ G GPPG AG APG G PG +
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAG---FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ 374
Query: 187 GERGL------PGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSD 348
G G PG+ GS G G
Sbjct: 375 GHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEP 434
Query: 349 GPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXX 528
G G G+ G +GER +G G
Sbjct: 435 GKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA 494
Query: 529 XXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXX 708
+G GE+G PG GPRG G G +G+ G PG+ G G
Sbjct: 495 GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGS---------PGGP 545
Query: 709 XXXXXXXXXXKDGRTGQPGAVGPAGIR 789
G +G+PG GP+G R
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPR 572
>ref|NP_001177638.1| collagen alpha-1(XI) chain isoform E preproprotein [Homo sapiens].
Length = 1767
Score = 139 bits (350), Expect = 6e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1239 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1277
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1278 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1334
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1335 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1394
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1395 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP 1454
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1455 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKK 1514
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1515 TRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1574
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1575 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1610
Score = 75.1 bits (183), Expect = 1e-13
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 879 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 938
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 939 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 965
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 966 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1025
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1026 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1120
Score = 72.4 bits (176), Expect = 9e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 931 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP 990
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 991 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1050
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1051 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1092
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1093 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1140
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1141 GQKGDEGARGFPGPPGPIGLQ 1161
Score = 68.6 bits (166), Expect = 1e-11
Identities = 64/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1004 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1036
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1037 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1096
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1097 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1129
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1130 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1189
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG+VG G
Sbjct: 1190 PQGPNGADGPQGPPGSVGSVG 1210
Score = 67.4 bits (163), Expect = 3e-11
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G G+ G G GPPG G G +G PG
Sbjct: 614 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 673
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+AG PG+DGPPG
Sbjct: 674 EKGPQGKPGLAGL---------------------------------------PGADGPPG 694
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 695 HPGKEGQSGEKGALGPPGPQGPIGYP------------GPRG------------------ 724
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 725 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR------------GEDG 772
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAG 793
Score = 65.1 bits (157), Expect = 1e-10
Identities = 67/265 (25%), Positives = 77/265 (29%), Gaps = 3/265 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLGL 174
+G G QGP+G GE G G PG AG P G +G
Sbjct: 660 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 719
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG RG +G GV G G G DG
Sbjct: 720 PGPRGVKGADGVRG---------------------------------LKGSKGEKGEDGF 746
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G G KG+R + G RGE
Sbjct: 747 PGFKGDMGLKGDR---------------------GEVGQIGPRGE--------------- 770
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G +G G GD GP G G KG G+ GLPG G G +
Sbjct: 771 ---DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGE 827
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIR 789
K G GQ G GP G R
Sbjct: 828 KGARGVAGKPGPRGQRGPTGPRGSR 852
Score = 63.2 bits (152), Expect = 5e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1111 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1158
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1159 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1185
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1186 GPRGPQGPNGADGPQGPPGSVGSVGGV---------GEKGEPGEAGNPGPPGEAGVGGPK 1236
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1237 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1293
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1294 GDKGEDGDPGQPGPPGPSG 1312
Score = 55.8 bits (133), Expect = 9e-08
Identities = 62/274 (22%), Positives = 75/274 (27%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPG-----------FAGEKXXXXXXXXXXXXXXXXXXXXXX 153
G GD+GP GR G GA G PG + G+
Sbjct: 427 GDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI 486
Query: 154 A----PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 321
A PG +GL G G G PG +G+
Sbjct: 487 ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV------------------- 527
Query: 322 XRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 501
G PG G PG+ G+ G G R G RG
Sbjct: 528 --QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 585
Query: 502 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 681
+G+ GE G G GPRG PG G G+ G+ G G G+
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 645
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG GP G
Sbjct: 646 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 679
>ref|NP_542197.3| collagen alpha-1(XI) chain isoform C preproprotein [Homo sapiens].
Length = 1690
Score = 139 bits (350), Expect = 6e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1162 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1200
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1201 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1257
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1258 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1317
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1318 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP 1377
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1378 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKK 1437
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1438 TRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1497
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1498 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1533
Score = 75.1 bits (183), Expect = 1e-13
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 802 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 861
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 862 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 888
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 889 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 948
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 949 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1008
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1009 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1043
Score = 72.4 bits (176), Expect = 9e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 854 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP 913
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 914 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 973
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 974 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1015
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1016 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1063
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1064 GQKGDEGARGFPGPPGPIGLQ 1084
Score = 68.6 bits (166), Expect = 1e-11
Identities = 64/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 927 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 959
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 960 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1019
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1020 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1052
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1053 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1112
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG+VG G
Sbjct: 1113 PQGPNGADGPQGPPGSVGSVG 1133
Score = 67.4 bits (163), Expect = 3e-11
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G G+ G G GPPG G G +G PG
Sbjct: 537 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 596
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+AG PG+DGPPG
Sbjct: 597 EKGPQGKPGLAGL---------------------------------------PGADGPPG 617
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 618 HPGKEGQSGEKGALGPPGPQGPIGYP------------GPRG------------------ 647
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 648 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR------------GEDG 695
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 696 PEGPKGRAGPTGDPGPSGQAG 716
Score = 65.1 bits (157), Expect = 1e-10
Identities = 67/265 (25%), Positives = 77/265 (29%), Gaps = 3/265 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLGL 174
+G G QGP+G GE G G PG AG P G +G
Sbjct: 583 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 642
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG RG +G GV G G G DG
Sbjct: 643 PGPRGVKGADGVRG---------------------------------LKGSKGEKGEDGF 669
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G G KG+R + G RGE
Sbjct: 670 PGFKGDMGLKGDR---------------------GEVGQIGPRGE--------------- 693
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G +G G GD GP G G KG G+ GLPG G G +
Sbjct: 694 ---DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGE 750
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIR 789
K G GQ G GP G R
Sbjct: 751 KGARGVAGKPGPRGQRGPTGPRGSR 775
Score = 63.2 bits (152), Expect = 5e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1034 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1081
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1082 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1108
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1109 GPRGPQGPNGADGPQGPPGSVGSVGGV---------GEKGEPGEAGNPGPPGEAGVGGPK 1159
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1160 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1216
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1217 GDKGEDGDPGQPGPPGPSG 1235
Score = 55.8 bits (133), Expect = 9e-08
Identities = 62/274 (22%), Positives = 75/274 (27%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPG-----------FAGEKXXXXXXXXXXXXXXXXXXXXXX 153
G GD+GP GR G GA G PG + G+
Sbjct: 350 GDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI 409
Query: 154 A----PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 321
A PG +GL G G G PG +G+
Sbjct: 410 ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV------------------- 450
Query: 322 XRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 501
G PG G PG+ G+ G G R G RG
Sbjct: 451 --QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 508
Query: 502 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 681
+G+ GE G G GPRG PG G G+ G+ G G G+
Sbjct: 509 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 568
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG GP G
Sbjct: 569 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 602
>ref|NP_542196.2| collagen alpha-1(XI) chain isoform B preproprotein [Homo sapiens].
Length = 1818
Score = 139 bits (350), Expect = 6e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1290 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1328
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1329 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1385
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1386 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1445
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1446 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP 1505
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1506 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKK 1565
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1566 TRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1625
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1626 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1661
Score = 75.1 bits (183), Expect = 1e-13
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 930 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 989
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 990 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 1016
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 1017 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1076
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1077 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1171
Score = 72.4 bits (176), Expect = 9e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 982 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP 1041
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 1042 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1101
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1102 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1143
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1144 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1191
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1192 GQKGDEGARGFPGPPGPIGLQ 1212
Score = 68.6 bits (166), Expect = 1e-11
Identities = 64/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1055 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1087
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1088 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1147
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1148 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1180
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1181 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1240
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG+VG G
Sbjct: 1241 PQGPNGADGPQGPPGSVGSVG 1261
Score = 67.4 bits (163), Expect = 3e-11
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G G+ G G GPPG G G +G PG
Sbjct: 665 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 724
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+AG PG+DGPPG
Sbjct: 725 EKGPQGKPGLAGL---------------------------------------PGADGPPG 745
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 746 HPGKEGQSGEKGALGPPGPQGPIGYP------------GPRG------------------ 775
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 776 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR------------GEDG 823
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAG 844
Score = 65.1 bits (157), Expect = 1e-10
Identities = 67/265 (25%), Positives = 77/265 (29%), Gaps = 3/265 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLGL 174
+G G QGP+G GE G G PG AG P G +G
Sbjct: 711 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 770
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG RG +G GV G G G DG
Sbjct: 771 PGPRGVKGADGVRG---------------------------------LKGSKGEKGEDGF 797
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G G KG+R + G RGE
Sbjct: 798 PGFKGDMGLKGDR---------------------GEVGQIGPRGE--------------- 821
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G +G G GD GP G G KG G+ GLPG G G +
Sbjct: 822 ---DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGE 878
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIR 789
K G GQ G GP G R
Sbjct: 879 KGARGVAGKPGPRGQRGPTGPRGSR 903
Score = 63.2 bits (152), Expect = 5e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1162 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1209
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1210 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1236
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1237 GPRGPQGPNGADGPQGPPGSVGSVGGV---------GEKGEPGEAGNPGPPGEAGVGGPK 1287
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1288 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1344
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1345 GDKGEDGDPGQPGPPGPSG 1363
Score = 55.8 bits (133), Expect = 9e-08
Identities = 62/274 (22%), Positives = 75/274 (27%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPG-----------FAGEKXXXXXXXXXXXXXXXXXXXXXX 153
G GD+GP GR G GA G PG + G+
Sbjct: 478 GDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI 537
Query: 154 A----PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 321
A PG +GL G G G PG +G+
Sbjct: 538 ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV------------------- 578
Query: 322 XRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 501
G PG G PG+ G+ G G R G RG
Sbjct: 579 --QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 636
Query: 502 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 681
+G+ GE G G GPRG PG G G+ G+ G G G+
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 696
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG GP G
Sbjct: 697 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 730
>ref|NP_001845.3| collagen alpha-1(XI) chain isoform A preproprotein [Homo sapiens].
Length = 1806
Score = 139 bits (350), Expect = 6e-33
Identities = 110/396 (27%), Positives = 139/396 (35%), Gaps = 10/396 (2%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGS 183
RG +G+ GP G G GA GPPG G K PG +G PG
Sbjct: 1278 RGEKGEAGPPGAAGPPGAKGPPGDDGPKGN---------------------PGPVGFPGD 1316
Query: 184 RGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGR 363
G G PG AG + G PG+ G GR
Sbjct: 1317 PGPPGEPGPAGQ---DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR 1373
Query: 364 DGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXX 543
G+ G KGE G G
Sbjct: 1374 QGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGP 1433
Query: 544 XXXQGIRGEKGEPGDKGPRGLPGL---------KGHNGLQGLPGLAGHHGDQXXXXXXXX 696
G+ G KG+PG KG +G PGL +G G +GLPG G G +
Sbjct: 1434 MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP 1493
Query: 697 XXXXXXXXXXXXXXKDGRTGQPGAVGPAGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXYD 876
G G G+ GPAG +
Sbjct: 1494 AGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKK 1553
Query: 877 FGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLS 1056
+ +AD + E+ +L SL IE + P G++ NPARTC+DL+LS
Sbjct: 1554 TRRHTEGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLS 1613
Query: 1057 HPEWSSGYYWIDPNQGCTMDAIKVYCDF-STGETCI 1161
HP++ G YWIDPNQGC+ D+ KVYC+F S GETCI
Sbjct: 1614 HPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCI 1649
Score = 75.1 bits (183), Expect = 1e-13
Identities = 70/275 (25%), Positives = 81/275 (29%), Gaps = 15/275 (5%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPP---------------GFAGEKXXXXXXXXXXXXXXXXX 138
RGP+G QGPVG G G GPP GF G+
Sbjct: 918 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGE 977
Query: 139 XXXXXAPGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 318
G G PG GE+GLPG AG
Sbjct: 978 TGPIGERGHPGPPGPPGEQGLPGAAGK--------------------------------- 1004
Query: 319 XXRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXX 498
G+PG G G+DG AG +G G+ GE
Sbjct: 1005 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1064
Query: 499 XXXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXX 678
G GEKG PG+KGP+G G G G GLPG AG G
Sbjct: 1065 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 679 XXXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
++G G PG GP G
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1159
Score = 72.4 bits (176), Expect = 9e-13
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP+G G G GE G GPPG GE+ G GL G
Sbjct: 970 GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFP 1029
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
GERGLPG G+ R G G GP G
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK 1089
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G KG + + G++GE
Sbjct: 1090 GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEI------------------ 1131
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
G G+KG GDKG G PG G G G PG+AG G+
Sbjct: 1132 ---GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE---------PGPRGQQGMF 1179
Query: 727 XXXXKDGRTGQPGAVGPAGIR 789
+G G PG GP G++
Sbjct: 1180 GQKGDEGARGFPGPPGPIGLQ 1200
Score = 68.6 bits (166), Expect = 1e-11
Identities = 64/261 (24%), Positives = 76/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L+G G QGP G G G G G AG +GLPG
Sbjct: 1043 LKGGEGPQGPPGPVGSPGERGSAGTAGP---------------------------IGLPG 1075
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
G +G PG AG DG+ G G PG
Sbjct: 1076 RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPG 1135
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
+ G G KGE +G G
Sbjct: 1136 QKGSKGDKGE---------------------------NGPPGPPGLQGPVGAPGIAGGDG 1168
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
+G +G G+ GD+G RG PG G GLQGLPG G G+
Sbjct: 1169 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG 1228
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
DG G PG+VG G
Sbjct: 1229 PQGPNGADGPQGPPGSVGSVG 1249
Score = 67.4 bits (163), Expect = 3e-11
Identities = 65/261 (24%), Positives = 78/261 (29%)
Frame = +1
Query: 1 LRGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPG 180
L GPRG G G+ G G GPPG G G +G PG
Sbjct: 653 LLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPG 712
Query: 181 SRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPG 360
+G +G PG+AG PG+DGPPG
Sbjct: 713 EKGPQGKPGLAGL---------------------------------------PGADGPPG 733
Query: 361 RDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXX 540
G+ G GE+ G RG
Sbjct: 734 HPGKEGQSGEKGALGPPGPQGPIGYP------------GPRG------------------ 763
Query: 541 XXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXX 720
G+RG KG G+KG G PG KG GL+G G G G +
Sbjct: 764 VKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR------------GEDG 811
Query: 721 XXXXXXKDGRTGQPGAVGPAG 783
+ G TG PG G AG
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAG 832
Score = 65.1 bits (157), Expect = 1e-10
Identities = 67/265 (25%), Positives = 77/265 (29%), Gaps = 3/265 (1%)
Frame = +1
Query: 4 RGPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAP---GFLGL 174
+G G QGP+G GE G G PG AG P G +G
Sbjct: 699 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 758
Query: 175 PGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGP 354
PG RG +G GV G G G DG
Sbjct: 759 PGPRGVKGADGVRG---------------------------------LKGSKGEKGEDGF 785
Query: 355 PGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXX 534
PG G G KG+R + G RGE
Sbjct: 786 PGFKGDMGLKGDR---------------------GEVGQIGPRGE--------------- 809
Query: 535 XXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXX 714
+G +G G GD GP G G KG G+ GLPG G G +
Sbjct: 810 ---DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGE 866
Query: 715 XXXXXXXXKDGRTGQPGAVGPAGIR 789
K G GQ G GP G R
Sbjct: 867 KGARGVAGKPGPRGQRGPTGPRGSR 891
Score = 63.2 bits (152), Expect = 5e-10
Identities = 65/259 (25%), Positives = 78/259 (30%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPGFAGEKXXXXXXXXXXXXXXXXXXXXXXAPGFLGLPGSR 186
GP G QGPVG G G G PG G++ A GF G PG
Sbjct: 1150 GPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEG------------ARGFPGPPGPI 1197
Query: 187 GERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGNPGSDGPPGRD 366
G +GLPG G +G+ G GPPG
Sbjct: 1198 GLQGLPGPPGE---------------------------------KGENGDVGPMGPPGPP 1224
Query: 367 GQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXXXXXXXXXXXXXXXXX 546
G G +G G +GE
Sbjct: 1225 GPRGPQGPNGADGPQGPPGSVGSVGGV---------GEKGEPGEAGNPGPPGEAGVGGPK 1275
Query: 547 XXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXXXXXXXXXXXXXXXXX 726
+G +GE G PG GP G G G +G +G PG G GD
Sbjct: 1276 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD---PGPPGEPGPAGQDGVG 1332
Query: 727 XXXXKDGRTGQPGAVGPAG 783
+DG GQPG GP+G
Sbjct: 1333 GDKGEDGDPGQPGPPGPSG 1351
Score = 55.8 bits (133), Expect = 9e-08
Identities = 62/274 (22%), Positives = 75/274 (27%), Gaps = 15/274 (5%)
Frame = +1
Query: 7 GPRGDQGPVGRTGETGASGPPG-----------FAGEKXXXXXXXXXXXXXXXXXXXXXX 153
G GD+GP GR G GA G PG + G+
Sbjct: 466 GDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI 525
Query: 154 A----PGFLGLPGSRGERGLPGVAGSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 321
A PG +GL G G G PG +G+
Sbjct: 526 ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV------------------- 566
Query: 322 XRDGNPGSDGPPGRDGQAGHKGERXXXXXXXXXXXXXXXXXXXXXXXXXKHGNRGEXXXX 501
G PG G PG+ G+ G G R G RG
Sbjct: 567 --QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPP 624
Query: 502 XXXXXXXXXXXXXXXXXQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQXXX 681
+G+ GE G G GPRG PG G G+ G+ G G G+
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 684
Query: 682 XXXXXXXXXXXXXXXXXXXKDGRTGQPGAVGPAG 783
G G PG GP G
Sbjct: 685 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQG 718
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,829,839
Number of extensions: 781613
Number of successful extensions: 24466
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 10008
Number of HSP's successfully gapped: 474
Length of query: 447
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 341
Effective length of database: 14,802,980
Effective search space: 5047816180
Effective search space used: 5047816180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012839
(1343 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 517 e-144
gb|JH118748.1| Sus scrofa unplaced genomic scaffold ChrUScaf2229 113 3e-22
>Sscrofa_Chr09
|| Length = 153670197
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 817 ggtcctcctggtcctcctggccctcctggaccacctggcccaagtggtggtggttatgat 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389659 ggtcctcctggtcctcctggccctcctggaccacctggcccaagtggtggtggttatgat 81389718
Query: 877 tttggatatgaaggagacttctacagggctgaccagcctcgctcaccaccttctctcaga 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389719 tttggatatgaaggagacttctacagggctgaccagcctcgctcaccaccttctctcaga 81389778
Query: 937 cccaaggattatgaagttgatgctactctgaaatctctcaacaaccagattgagactcta 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389779 cccaaggattatgaagttgatgctactctgaaatctctcaacaaccagattgagactcta 81389838
Query: 997 cttactccagaaggctctaggaagaacccagctcgcacatgccgtgacttgagactcagc 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389839 cttactccagaaggctctaggaagaacccagctcgcacatgccgtgacttgagactcagc 81389898
Query: 1057 cacccagaatggagtagtggt 1077
|||||||||||||||||||||
Sbjct: 81389899 cacccagaatggagtagtggt 81389919
Score = 276 bits (139), Expect = 3e-71
Identities = 174/185 (94%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 1075 ggttactactggattgaccctaaccaaggatgtactatggatgctatcaaagtatactgt 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81390329 ggttactactggattgaccctaaccaaggatgtactatggatgctatcaaagtatactgt 81390388
Query: 1135 gatttctctactggtgaaacctgcattcgagctncaccctgaaacatcccag-caaaaac 1193
||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct: 81390389 gatttctctactggtgaaacctgcattcgagctcaacctgaaaacatcccagccaaaaac 81390448
Query: 1194 tggtacagaaactccaaagtcaagaagcacgtctgggtangagaaactattcatggtggt 1253
||||||||||||||||| |||||||||||||||||| || |||||||||| ||||||||
Sbjct: 81390449 tggtacagaaactccaaggtcaagaagcacgtctggttaggagaaactatcaatggtggt 81390508
Query: 1254 accca 1258
|||||
Sbjct: 81390509 accca 81390513
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 cttcgtgggcctcgtggtgaccaaggtccagttggtcgaactggagaaacaggtgcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81385544 cttcgtgggcctcgtggtgaccaaggtccagttggtcgaactggagaaacaggtgcatct 81385603
Query: 61 ggcccccctggctttgctggtgagaaaggtccctctggagagcctggtactgctg 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81385604 ggcccccctggctttgctggtgagaaaggtccctctggagagcctggtactgctg 81385658
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 383 agggcgagcgtggttaccctggtaatcctggtcctgctggtgctgcaggagcacctggtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387785 agggcgagcgtggttaccctggtaatcctggtcctgctggtgctgcaggagcacctggtc 81387844
Query: 443 ctcaaggtgctgtgggtcccgctggcaaacatggaaaccgtggtgaacctg 493
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387845 ctcaaggtgctgtgggtcccgctggcaaacatggaaaccgtggtgaacctg 81387895
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 222 gggtgaacctggccctctcggcattgcaggcccacctggggcccgtggtccccctggtgc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387151 gggtgaacctggccctctcggcattgcaggcccacctggggcccgtggtccccctggtgc 81387210
Query: 282 tgtgggtaatcctggtgtcaatggtgctcctggtgaagctggtcgtgatg 331
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387211 tgtgggtaatcctggtgtcaatggtgctcctggtgaagctggtcgtgatg 81387260
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 708 gggtccagctggtccttctggccctgctggcaaagatggtcgcactggacaacctggtgc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389219 gggtccagctggtccttctggccctgctggcaaagatggtcgcactggacaacctggtgc 81389278
Query: 768 agttggacctgctggcattcgtggctctcaaggaagccaaggtcctgctg 817
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389279 agttggacctgctggcattcgtggctctcaaggaagccaaggtcctgctg 81389328
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 115 ggacctcctggtaccccaggtcctcaaggtattcttggtgctcctggttttctgggtctc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81386377 ggacctcctggtaccccaggtcctcaaggtattcttggtgctcctggttttctgggtctc 81386436
Query: 175 cctggctctagaggtgaacgtggtctaccaggtgttgctggatcagtgg 223
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81386437 cctggctctagaggtgaacgtggtctaccaggtgttgctggatcagtgg 81386485
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 547 ggcccacaaggtattcgaggtgagaagggagagcctggtgataaggggcccagaggtctt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81388462 ggcccacaaggtattcgaggtgagaagggagagcctggtgataaggggcccagaggtctt 81388521
Query: 607 cctggcttgaagggacacaacggattgcaaggtcttcctggtcttgctg 655
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81388522 cctggcttgaagggacacaacggattgcaaggtcttcctggtcttgctg 81388570
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 331 ggcaaccctggaagcgatggtcccccaggccgagatggtcaagctggacacaagg 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81387644 ggcaaccctggaagcgatggtcccccaggccgagatggtcaagctggacacaagg 81387698
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 493 ggtcctgctggttctgttggtcctgctggtgctgttggtccaagaggtcctagtg 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81388031 ggtcctgctggttctgttggtcctgctggtgctgttggtccaagaggtcctagtg 81388085
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 655 ggtcatcatggtgatcaaggtgctcctggccctgtgggtcctgctggtcctaggg 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81389044 ggtcatcatggtgatcaaggtgctcctggccctgtgggtcctgctggtcctaggg 81389098
Score = 99.6 bits (50), Expect = 4e-18
Identities = 74/78 (94%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 1269 atatggaaggagttaccac-aagggaatggctacacaacttg-cttcatgcgcctgctgg 1326
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct: 81391120 atatggaaggagttaccaccaaggaaatggctacacaacttgccttcatgcgcctgctgg 81391179
Query: 1327 -caaccatgcctcccaaa 1343
|||||||||||||||||
Sbjct: 81391180 ccaaccatgcctcccaaa 81391197
>gb|JH118748.1| Sus scrofa unplaced genomic scaffold ChrUScaf2229
Length = 288688
Score = 113 bits (57), Expect = 3e-22
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 1176 aaacatcccagc-aaaaactggtacagaaactccaaagtcaagaagcacgtctgggtang 1234
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct: 30865 aaacatcccagccaaaaactggtacagaaactccaaggtcaagaagcacgtctggttagg 30806
Query: 1235 agaaactattcatggtggtaccca 1258
||||||||| |||||||||||||
Sbjct: 30805 agaaactatcaatggtggtaccca 30782
Score = 99.6 bits (50), Expect = 4e-18
Identities = 74/78 (94%), Gaps = 3/78 (3%)
Strand = Plus / Minus
Query: 1269 atatggaaggagttaccac-aagggaatggctacacaacttg-cttcatgcgcctgctgg 1326
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct: 30175 atatggaaggagttaccaccaaggaaatggctacacaacttgccttcatgcgcctgctgg 30116
Query: 1327 -caaccatgcctcccaaa 1343
|||||||||||||||||
Sbjct: 30115 ccaaccatgcctcccaaa 30098
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,224,275
Number of extensions: 322
Number of successful extensions: 322
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 14
Length of query: 1343
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1322
Effective length of database: 2,808,413,156
Effective search space: 3712722192232
Effective search space used: 3712722192232
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)