Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012841
(1149 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854289.1| PREDICTED: similar to Prolyl endopeptidase (Pos... 434 e-131
Alignment gi|XP_868339.1| PREDICTED: similar to Prolyl endopeptidase (Pos... 434 e-131
Alignment gi|XP_539066.2| PREDICTED: similar to prolyl endopeptidase isof... 434 e-129
Alignment gi|XP_868343.1| PREDICTED: similar to prolyl endopeptidase isof... 427 e-129
Alignment gi|XP_868346.1| PREDICTED: similar to prolyl endopeptidase isof... 424 e-128
>ref|XP_854289.1| PREDICTED: similar to Prolyl endopeptidase (Post-proline cleaving
enzyme) (PE) isoform 2 [Canis familiaris].
Length = 651
Score = 434 bits (1115), Expect(3) = e-131
Identities = 202/207 (97%), Positives = 206/207 (99%)
Frame = +2
Query: 410 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVA 589
MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSL+GEARVFLDPN+LSDDGTVA
Sbjct: 1 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLDGEARVFLDPNLLSDDGTVA 60
Query: 590 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 769
LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF
Sbjct: 61 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 120
Query: 770 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY 949
YN+YPQQDGKSDGTETSTNLHQKL YHVLGTDQSED+LCAEFPDEPKWMGGAELSDDGRY
Sbjct: 121 YNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGRY 180
Query: 950 VLLSIREGCDPVNRLWYCDLQQESNGI 1030
VLLSIREGCDPVNRLWYCDLQQESNGI
Sbjct: 181 VLLSIREGCDPVNRLWYCDLQQESNGI 207
Score = 48.1 bits (113), Expect(3) = e-131
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 228 EGEYDYVTNEGTVFTFKTNRHSPNYRL 254
Score = 29.6 bits (65), Expect(3) = e-131
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 1030 PRILKWVKLIDNLKG 1074
P ILKWVKLIDN +G
Sbjct: 215 PGILKWVKLIDNFEG 229
>ref|XP_868339.1| PREDICTED: similar to Prolyl endopeptidase (Post-proline cleaving
enzyme) (PE) isoform 3 [Canis familiaris].
Length = 578
Score = 434 bits (1115), Expect(3) = e-131
Identities = 202/207 (97%), Positives = 206/207 (99%)
Frame = +2
Query: 410 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVA 589
MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSL+GEARVFLDPN+LSDDGTVA
Sbjct: 1 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLDGEARVFLDPNLLSDDGTVA 60
Query: 590 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 769
LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF
Sbjct: 61 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 120
Query: 770 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY 949
YN+YPQQDGKSDGTETSTNLHQKL YHVLGTDQSED+LCAEFPDEPKWMGGAELSDDGRY
Sbjct: 121 YNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGRY 180
Query: 950 VLLSIREGCDPVNRLWYCDLQQESNGI 1030
VLLSIREGCDPVNRLWYCDLQQESNGI
Sbjct: 181 VLLSIREGCDPVNRLWYCDLQQESNGI 207
Score = 48.1 bits (113), Expect(3) = e-131
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 221 EGEYDYVTNEGTVFTFKTNRHSPNYRL 247
Score = 27.7 bits (60), Expect(3) = e-131
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 1036 ILKWVKLIDNLKG 1074
ILKWVKLIDN +G
Sbjct: 210 ILKWVKLIDNFEG 222
>ref|XP_539066.2| PREDICTED: similar to prolyl endopeptidase isoform 1 [Canis
familiaris].
Length = 647
Score = 434 bits (1115), Expect(3) = e-129
Identities = 202/207 (97%), Positives = 206/207 (99%)
Frame = +2
Query: 410 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVA 589
MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSL+GEARVFLDPN+LSDDGTVA
Sbjct: 1 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLDGEARVFLDPNLLSDDGTVA 60
Query: 590 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 769
LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF
Sbjct: 61 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 120
Query: 770 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY 949
YN+YPQQDGKSDGTETSTNLHQKL YHVLGTDQSED+LCAEFPDEPKWMGGAELSDDGRY
Sbjct: 121 YNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGRY 180
Query: 950 VLLSIREGCDPVNRLWYCDLQQESNGI 1030
VLLSIREGCDPVNRLWYCDLQQESNGI
Sbjct: 181 VLLSIREGCDPVNRLWYCDLQQESNGI 207
Score = 48.1 bits (113), Expect(3) = e-129
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 224 EGEYDYVTNEGTVFTFKTNRHSPNYRL 250
Score = 23.1 bits (48), Expect(3) = e-129
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 1042 KWVKLIDNLKG 1074
+WVKLIDN +G
Sbjct: 215 QWVKLIDNFEG 225
>ref|XP_868343.1| PREDICTED: similar to prolyl endopeptidase isoform 4 [Canis
familiaris].
Length = 655
Score = 427 bits (1099), Expect(3) = e-129
Identities = 202/212 (95%), Positives = 206/212 (97%), Gaps = 5/212 (2%)
Frame = +2
Query: 410 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVA 589
MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSL+GEARVFLDPN+LSDDGTVA
Sbjct: 1 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLDGEARVFLDPNLLSDDGTVA 60
Query: 590 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 769
LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF
Sbjct: 61 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 120
Query: 770 YNAYPQQDGKSD-----GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS 934
YN+YPQQDGKSD GTETSTNLHQKL YHVLGTDQSED+LCAEFPDEPKWMGGAELS
Sbjct: 121 YNSYPQQDGKSDVNLESGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELS 180
Query: 935 DDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 1030
DDGRYVLLSIREGCDPVNRLWYCDLQQESNGI
Sbjct: 181 DDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 212
Score = 48.1 bits (113), Expect(3) = e-129
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 232 EGEYDYVTNEGTVFTFKTNRHSPNYRL 258
Score = 28.9 bits (63), Expect(3) = e-129
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 1012 AGVQWHPRILKWVKLIDNLKG 1074
+G Q ILKWVKLIDN +G
Sbjct: 213 SGFQSTAGILKWVKLIDNFEG 233
>ref|XP_868346.1| PREDICTED: similar to prolyl endopeptidase isoform 5 [Canis
familiaris].
Length = 653
Score = 424 bits (1090), Expect(3) = e-128
Identities = 200/209 (95%), Positives = 204/209 (97%), Gaps = 2/209 (0%)
Frame = +2
Query: 410 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVA 589
MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSL+GEARVFLDPN+LSDDGTVA
Sbjct: 1 MTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLDGEARVFLDPNLLSDDGTVA 60
Query: 590 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 769
LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF
Sbjct: 61 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 120
Query: 770 YNAYPQQDGK--SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 943
YN+YPQQDGK GTETSTNLHQKL YHVLGTDQSED+LCAEFPDEPKWMGGAELSDDG
Sbjct: 121 YNSYPQQDGKKREAGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDG 180
Query: 944 RYVLLSIREGCDPVNRLWYCDLQQESNGI 1030
RYVLLSIREGCDPVNRLWYCDLQQESNGI
Sbjct: 181 RYVLLSIREGCDPVNRLWYCDLQQESNGI 209
Score = 48.1 bits (113), Expect(3) = e-128
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 230 EGEYDYVTNEGTVFTFKTNRHSPNYRL 256
Score = 29.6 bits (65), Expect(3) = e-128
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 1030 PRILKWVKLIDNLKG 1074
P ILKWVKLIDN +G
Sbjct: 217 PGILKWVKLIDNFEG 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,723,103
Number of extensions: 1084595
Number of successful extensions: 2862
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2860
Number of HSP's successfully gapped: 15
Length of query: 383
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 278
Effective length of database: 15,374,224
Effective search space: 4274034272
Effective search space used: 4274034272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012841
(1149 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777197.1| prolyl endopeptidase [Bos taurus]. 560 e-169
>ref|NP_777197.1| prolyl endopeptidase [Bos taurus].
Length = 710
Score = 560 bits (1442), Expect(3) = e-169
Identities = 263/273 (96%), Positives = 266/273 (97%)
Frame = +2
Query: 212 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 391
MLSFQYPDVYRDETA+QDYHGHK+CDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR
Sbjct: 1 MLSFQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 392 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 571
GLYKERMTELYDYPKYSC+FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARV LDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVCLDPNTLS 120
Query: 572 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 751
DDGTVALRGYAFSEDGEY AYGLSASGSDWVTIKFMKVDGAKEL DVLERVKFSCMAWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYVAYGLSASGSDWVTIKFMKVDGAKELADVLERVKFSCMAWTH 180
Query: 752 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 931
DGKGMFYNAYPQQDGKSDGTETSTNLHQKL YHVLGTDQSEDILCAEFPDEPKWMGGAEL
Sbjct: 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240
Query: 932 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 1030
SDDGRYVLLSIREGCDPVNRLWYCDL QE NGI
Sbjct: 241 SDDGRYVLLSIREGCDPVNRLWYCDLHQEPNGI 273
Score = 48.1 bits (113), Expect(3) = e-169
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 287 EGEYDYVTNEGTVFTFKTNRHSPNYRL 313
Score = 27.7 bits (60), Expect(3) = e-169
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 1036 ILKWVKLIDNLKG 1074
ILKWVKLIDN +G
Sbjct: 276 ILKWVKLIDNFEG 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,825,420
Number of extensions: 1049200
Number of successful extensions: 2719
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2714
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 279
Effective length of database: 14,240,222
Effective search space: 3973021938
Effective search space used: 3973021938
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012841
(1149 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004050.1| prolyl endopeptidase [Sus scrofa]. 581 e-175
Alignment gi|XP_003361357.1| PREDICTED: prolyl endopeptidase-like [Sus sc... 395 e-110
>ref|NP_001004050.1| prolyl endopeptidase [Sus scrofa].
Length = 710
Score = 581 bits (1498), Expect(3) = e-175
Identities = 273/273 (100%), Positives = 273/273 (100%)
Frame = +2
Query: 212 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 391
MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 392 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 571
GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 572 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 751
DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 752 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 931
DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL
Sbjct: 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240
Query: 932 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 1030
SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI
Sbjct: 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273
Score = 48.1 bits (113), Expect(3) = e-175
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK RHSPNYRL
Sbjct: 287 EGEYDYVTNEGTVFTFKTNRHSPNYRL 313
Score = 27.7 bits (60), Expect(3) = e-175
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 1036 ILKWVKLIDNLKG 1074
ILKWVKLIDN +G
Sbjct: 276 ILKWVKLIDNFEG 288
>ref|XP_003361357.1| PREDICTED: prolyl endopeptidase-like [Sus scrofa].
Length = 268
Score = 395 bits (1014), Expect = e-110
Identities = 185/185 (100%), Positives = 185/185 (100%)
Frame = +2
Query: 257 IQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPK 436
IQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPK
Sbjct: 72 IQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPK 131
Query: 437 YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED 616
YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED
Sbjct: 132 YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED 191
Query: 617 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDG 796
GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDG
Sbjct: 192 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDG 251
Query: 797 KSDGT 811
KSDGT
Sbjct: 252 KSDGT 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,255,088
Number of extensions: 670848
Number of successful extensions: 1824
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1824
Number of HSP's successfully gapped: 4
Length of query: 383
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 282
Effective length of database: 8,829,335
Effective search space: 2489872470
Effective search space used: 2489872470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012841
(1149 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035286.1| prolyl endopeptidase [Mus musculus]. 564 e-169
>ref|NP_035286.1| prolyl endopeptidase [Mus musculus].
Length = 710
Score = 564 bits (1453), Expect(3) = e-169
Identities = 262/273 (95%), Positives = 269/273 (98%)
Frame = +2
Query: 212 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 391
MLSFQYPDVYRDET++Q+YHGHK+CDPY+WLEDPDSEQTKAFVEAQNKITVPFLEQCPIR
Sbjct: 1 MLSFQYPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 392 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 571
GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPN LS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLS 120
Query: 572 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 751
DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKF+CMAWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTH 180
Query: 752 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 931
DGKGMFYN+YPQQDGKSDGTETSTNLHQKL YHVLGTDQSEDILCAEFPDEPKWMGGAEL
Sbjct: 181 DGKGMFYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240
Query: 932 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 1030
SDDGRYVLLSI EGCDPVNRLWYCDLQQE NGI
Sbjct: 241 SDDGRYVLLSIWEGCDPVNRLWYCDLQQEPNGI 273
Score = 45.4 bits (106), Expect(3) = e-169
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK R+SPNYRL
Sbjct: 287 EGEYDYVTNEGTVFTFKTNRNSPNYRL 313
Score = 27.7 bits (60), Expect(3) = e-169
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 1036 ILKWVKLIDNLKG 1074
ILKWVKLIDN +G
Sbjct: 276 ILKWVKLIDNFEG 288
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,778,864
Number of extensions: 909761
Number of successful extensions: 2493
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2493
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 280
Effective length of database: 12,523,851
Effective search space: 3506678280
Effective search space used: 3506678280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012841
(1149 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002717.3| prolyl endopeptidase [Homo sapiens]. 575 e-172
>ref|NP_002717.3| prolyl endopeptidase [Homo sapiens].
Length = 710
Score = 575 bits (1482), Expect(3) = e-172
Identities = 268/273 (98%), Positives = 272/273 (99%)
Frame = +2
Query: 212 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 391
MLS QYPDVYRDETA+QDYHGHK+CDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR
Sbjct: 1 MLSLQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 392 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 571
GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 572 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 751
DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 752 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 931
DGKGMFYN+YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL
Sbjct: 181 DGKGMFYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240
Query: 932 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 1030
SDDGRYVLLSIREGCDPVNRLWYCDLQQES+GI
Sbjct: 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESSGI 273
Score = 43.9 bits (102), Expect(3) = e-172
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 1068 ERKYDYVPNEGRVFTFKGKRHSPNYRL 1148
E +YDYV NEG VFTFK R SPNYR+
Sbjct: 287 EGEYDYVTNEGTVFTFKTNRQSPNYRV 313
Score = 27.7 bits (60), Expect(3) = e-172
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 1036 ILKWVKLIDNLKG 1074
ILKWVKLIDN +G
Sbjct: 276 ILKWVKLIDNFEG 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,951,140
Number of extensions: 1072574
Number of successful extensions: 2817
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2817
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 279
Effective length of database: 14,868,908
Effective search space: 4148425332
Effective search space used: 4148425332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012841
(1149 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894097.2| Sus scrofa unplaced genomic scaffold ChrUScaf1981 422 e-115
Sscrofa_Chr01 190 1e-45
Sscrofa_Chr17 101 8e-19
>gb|GL894097.2| Sus scrofa unplaced genomic scaffold ChrUScaf1981
Length = 86842
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Minus
Query: 595 aggctatgcattcagtgaagatggtgaatattttgcatatggtctgagtgccagcggctc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21109 aggctatgcattcagtgaagatggtgaatattttgcatatggtctgagtgccagcggctc 21050
Query: 655 agactgggtgacgatcaagttcatgaaagtcgatggtgccaaagagcttccggatgtgct 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21049 agactgggtgacgatcaagttcatgaaagtcgatggtgccaaagagcttccggatgtgct 20990
Query: 715 tgaaagagtcaagttcagctgtatggcctggacccatgatgggaagggaatgttctacaa 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20989 tgaaagagtcaagttcagctgtatggcctggacccatgatgggaagggaatgttctacaa 20930
Query: 775 tgcatacccccaacaggatgggaaaagtgatgg 807
|||||||||||||||||||||||||||||||||
Sbjct: 20929 tgcatacccccaacaggatgggaaaagtgatgg 20897
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 465 ggtatttctatttttacaatacaggtttgcagaaccaacgagtattatatgtacaggatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26917 ggtatttctatttttacaatacaggtttgcagaaccaacgagtattatatgtacaggatt 26858
Query: 525 ccttagagggggaagccagagtgttcctcgaccccaacatactctctgatgacggcacgg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26857 ccttagagggggaagccagagtgttcctcgaccccaacatactctctgatgacggcacgg 26798
Query: 585 tggcactccgagg 597
|||||||||||||
Sbjct: 26797 tggcactccgagg 26785
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 330 aggctttcgtggaagcccagaacaagatcactgtgccatttcttgagcagtgtcctatca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28204 aggctttcgtggaagcccagaacaagatcactgtgccatttcttgagcagtgtcctatca 28145
Query: 390 gaggtttatacaaagagaggatgactgaattgtatgactaccccaagtatagttgccact 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28144 gaggtttatacaaagagaggatgactgaattgtatgactaccccaagtatagttgccact 28085
Query: 450 tc 451
||
Sbjct: 28084 tc 28083
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 827 ctccaccaaaagctctactaccatgtcttgggaaccgatcagtcagaagatattttgtgt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16068 ctccaccaaaagctctactaccatgtcttgggaaccgatcagtcagaagatattttgtgt 16009
Query: 887 gctgagtttcctgatgagcctaagtggatgggtggagctgag 928
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16008 gctgagtttcctgatgagcctaagtggatgggtggagctgag 15967
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 257 atccaggattatcatggacataaagtctgtgacccttacgcttggcttgaagacccagac 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48158 atccaggattatcatggacataaagtctgtgacccttacgcttggcttgaagacccagac 48099
Query: 317 agcgagcagacgaagg 332
||||||||||||||||
Sbjct: 48098 agcgagcagacgaagg 48083
>Sscrofa_Chr01
|| Length = 315321322
Score = 190 bits (96), Expect = 1e-45
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 927 agttatctgacgatggtcgctacgtcttgttgtcaataagggagggctgtgacccagtga 986
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 80892385 agttatccgacgatggtcgctacgtcttgttgtcaataagggagggctgcgacccagtga 80892326
Query: 987 accgactctggtactgtgacctgcagcaggagtccaatggcatc 1030
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80892325 accgactctggtactgtgacctgcagcaggagtccaatggcatc 80892282
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 257 atccaggattatcatggacataaagtctgtgacccttacgcttggcttgaagacccagac 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80954973 atccaggattatcatggacataaagtctgtgacccttacgcttggcttgaagacccagac 80954914
Query: 317 agcgagcagacgaagg 332
||||||||||||||||
Sbjct: 80954913 agcgagcagacgaagg 80954898
Score = 123 bits (62), Expect = 2e-25
Identities = 107/118 (90%), Gaps = 3/118 (2%)
Strand = Plus / Minus
Query: 1034 gaatcctgaagtgggtaaaactgatcgacaacttgaaagga-aatatgactacgtgccca 1092
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 80877325 gaatcctgaagtgggtaaaactgatcgacaacttcgaaggagaatatgactacgtgacca 80877266
Query: 1093 acgagggccgggtcttcaccttcaaaggcaaa-cgccattctcccaattaccgcctga 1149
|||||||| ||||||||| ||| ||| |||| |||||||||||||| ||||||||||
Sbjct: 80877265 acgagggcacggtcttcacgttc-aagacaaaccgccattctcccaactaccgcctga 80877209
>Sscrofa_Chr17
|| Length = 69701581
Score = 101 bits (51), Expect = 8e-19
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 964 aagggagggctgtgacccagtgaaccgactctggtactgtgacctgcagcaggagtccaa 1023
|||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4706787 aaggaagggctgcgacccagtgaactgactctggtactgtgacctgcagcaggagtccaa 4706728
Query: 1024 tggcatc 1030
||||||
Sbjct: 4706727 cggcatc 4706721
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,613,123
Number of extensions: 97
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 9
Length of query: 1149
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1128
Effective length of database: 2,808,413,156
Effective search space: 3167890039968
Effective search space used: 3167890039968
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)