Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012844
(930 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine ... 377 e-105
Alignment gi|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [... 375 e-104
Alignment gi|NP_001092465.1| serine dehydratase-like [Bos taurus]. 239 2e-63
Alignment gi|NP_001071433.1| serine racemase [Bos taurus]. 54 2e-07
>ref|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine deaminase-like, partial
[Bos taurus].
Length = 259
Score = 377 bits (968), Expect = e-105
Identities = 191/255 (74%), Positives = 209/255 (81%)
Frame = +3
Query: 165 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 344
M SG+PLH+ TP+RDSMTLSKVAGTTVYLKL+S+QPSGSFKIRGIGHLCK WAERGCEHF
Sbjct: 1 MMSGRPLHMETPVRDSMTLSKVAGTTVYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHF 60
Query: 345 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 524
VCSS RKLGIP+ IVVPSTTPALTIQRLKNEGA VKVVGETLDEAI++A
Sbjct: 61 VCSSAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGETLDEAIRVA 120
Query: 525 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 704
KDL KNNS WVYVPPFDDPLIWEGH+SIVKELKETM+ KP
Sbjct: 121 KDLEKNNSGWVYVPPFDDPLIWEGHSSIVKELKETMTEKPGAIVLAVGGGGLLCGVVQGL 180
Query: 705 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 884
EVGW DVP++ +ETIGA+SF+ASTKAGKLVTLP ITSVAKALGVTTV AQAMKV++E P
Sbjct: 181 AEVGWRDVPVITMETIGAESFHASTKAGKLVTLPCITSVAKALGVTTVAAQAMKVYREHP 240
Query: 885 VFSEVVSDQEAVAAL 929
+FSEVVSDQEAVAAL
Sbjct: 241 IFSEVVSDQEAVAAL 255
>ref|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [Bos taurus].
Length = 327
Score = 375 bits (964), Expect = e-104
Identities = 190/255 (74%), Positives = 208/255 (81%)
Frame = +3
Query: 165 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 344
M SG+PLH+ TP+RDSMTLSKVAGTT YLKL+S+QPSGSFKIRGIGHLCK WAERGCEHF
Sbjct: 1 MMSGRPLHMETPVRDSMTLSKVAGTTAYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHF 60
Query: 345 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 524
VCSS RKLGIP+ IVVPSTTPALTIQRLKNEGA VKVVGETLDEAI++A
Sbjct: 61 VCSSAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGETLDEAIRVA 120
Query: 525 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 704
KDL KNNS WVYVPPFDDPLIWEGH+SIVKELKETM+ KP
Sbjct: 121 KDLEKNNSGWVYVPPFDDPLIWEGHSSIVKELKETMTEKPGAIVLAVGGGGLLCGVVQGL 180
Query: 705 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 884
EVGW DVP++ +ETIGA+SF+ASTKAGKLVTLP ITSVAKALGVTTV AQAMKV++E P
Sbjct: 181 AEVGWRDVPVITMETIGAESFHASTKAGKLVTLPCITSVAK
Animal-Genome cDNA 20110601C-012844
Animal-Genome cDNA 20110601C-012844
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012844
(930 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis... 355 4e-98
Alignment gi|XP_543408.2| PREDICTED: similar to serine dehydratase-like [... 233 1e-61
Alignment gi|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2... 55 1e-07
Alignment gi|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1... 55 1e-07
>ref|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis familiaris].
Length = 327
Score = 355 bits (910), Expect = 4e-98
Identities = 177/255 (69%), Positives = 203/255 (79%)
Frame = +3
Query: 165 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 344
M G+PLHV+TPIRDSM+LSKVAGT+VYLK++S+QPSGSFKIRGIGHLCK WAE+GCEHF
Sbjct: 1 MTPGEPLHVKTPIRDSMSLSKVAGTSVYLKMDSAQPSGSFKIRGIGHLCKMWAEQGCEHF 60
Query: 345 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 524
VCSS RKLGIPA IVVPSTTPALTI+RLKNEGA+VKVVGE LDEA +LA
Sbjct: 61 VCSSAGNAGMAAAYAARKLGIPATIVVPSTTPALTIERLKNEGAIVKVVGEMLDEAFELA 120
Query: 525 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 704
K L KNN WVY+PPFDDPLIWEGH SIVKELKET+SAKP
Sbjct: 121 KALAKNNPGWVYIPPFDDPLIWEGHTSIVKELKETLSAKPGAIALSVGGGGLLCGVVQGL 180
Query: 705 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 884
EVGWGDVP++A+ET GA SF+A+T AGKLV+L ++TSVAKAL V TV AQA+K+FQE P
Sbjct: 181 QEVGWGDVPVIAMETAGAHSFHAATTAGKLVSLSQVTSVAKALCVKTVGAQALKLFQEHP 240
Query: 885 VFSEVVSDQEAVAAL 929
+FSEV+SDQEAVAA+
Sbjct: 241 IFSEVISDQEAVAAI 255
>ref|XP_543408.2| PREDICTED: similar to serine dehydratase-like [Canis familiaris].
Length = 329
Score = 233 bits (595), Expect = 1e-61
Identities = 125/254 (49%), Positives = 160/254 (62%)
Frame = +3
Query: 168 ASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFV 347
A + HV TP+ +S LS+VAG TV+LK E+ QP+GSFKIRGIGH C+ A++GC H V
Sbjct: 9 AKAEHFHVVTPLLESWALSQVAGVTVFLKCENVQPAGSFKIRGIGHFCQEVAKKGCRHLV 68
Query: 348 CSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAK 527
CSS RKLGIPA IV+P T ++RL+ EGA V++ G+ DEA A+
Sbjct: 69 CSSGGNAGIAAAYAARKLGIPATIVLPEGTSPQVVKRLQGEGAEVQLTGKVWDEASLKAQ 128
Query: 528 DLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXX 707
+L K + WV V PFD LIWEGHAS+V+ELK + P
Sbjct: 129 ELAKRD-GWVNVHPFDHRLIWEGHASLVRELKAALGTPPGALVLAVGGGGLLAGVSAGLA 187
Query: 708 EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPV 887
EVGW VPI+A+ET GA FNA+ KAG+LVTLP ITSVAK+LG TV A+A++ QE +
Sbjct: 188 EVGWQHVPIIAVETRGAHCFNAAIKAGRLVTLPEITSVAKSLGAKTVAARALECTQELEI 247
Query: 888 FSEVVSDQEAVAAL 929
SEVV D +AV+A+
Sbjct: 248 ISEVVEDVQAVSAV 261
>ref|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2 [Canis familiaris].
Length = 314
Score = 54.7 bits (130), Expect = 1e-07
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Frame = +3
Query: 195 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 362
TP+ S L++V G ++ K E Q +GSFKIRG I L +E + V S
Sbjct: 26 TPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSSG 85
Query: 363 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 542
+ GIPA IVVP T P ++ GA + V E DE+ + +
Sbjct: 86 NHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYSEQNDESRENLTRRIME 144
Query: 543 NSNWVYVPPFDDPLIWEGHASIVKEL 620
+ + V P +P + G +I E+
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIAMEV 170
>ref|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1 [Canis familiaris].
Length = 339
Score = 54.7 bits (130), Expect = 1e-07
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Frame = +3
Query: 195 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 362
TP+ S L++V G ++ K E Q +GSFKIRG I L +E + V S
Sbjct: 26 TPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSSG 85
Query: 363 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 542
+ GIPA IVVP T P ++ GA + V E DE+ + +
Sbjct: 86 NHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYSEQNDESRENLTRRIME 144
Query: 543 NSNWVYVPPFDDPLIWEGHASIVKEL 620
+ + V P +P + G +I E+
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIAMEV 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,995,525
Number of extensions: 1063543
Number of successful extensions: 7626
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7451
Number of HSP's successfully gapped: 4
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
ALGVTTVAAQAMKVYREHP 240
Query: 885 VFSEVVSDQEAVAAL 929
+FSEVVSDQEAVAAL
Sbjct: 241 IFSEVVSDQEAVAAL 255
>ref|NP_001092465.1| serine dehydratase-like [Bos taurus].
Length = 329
Score = 239 bits (611), Expect = 2e-63
Identities = 126/259 (48%), Positives = 165/259 (63%)
Frame = +3
Query: 153 PVPAMASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERG 332
P+ A G+P H+ TP+ +S LS+VAG V+LK E+ QP+GSFKIRGIGH C+ A++G
Sbjct: 4 PLEECAEGEPFHIVTPLLESWALSQVAGMPVFLKYENVQPAGSFKIRGIGHFCQEVAKKG 63
Query: 333 CEHFVCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEA 512
C H VCSS RKL IPA IV+P T ++RL+ EGA V++ G+ +EA
Sbjct: 64 CRHLVCSSGGNAGIAAAYAARKLRIPATIVLPEGTSVKVVKRLQGEGAEVQLTGKIWEEA 123
Query: 513 IKLAKDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXX 692
A++L KN+ WV +PPFD PLIWEGH S+V+ELK + P
Sbjct: 124 NLRAQELAKND-GWVNLPPFDHPLIWEGHVSLVRELKAALGTPPGALVLAVGGGGLLAGV 182
Query: 693 XXXXXEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVF 872
EVGW VPI+A+ET GA FNA+ KAGKLVTLP ITS+AK+LG TV A+A++
Sbjct: 183 SAGLAEVGWQHVPIIAMETQGAHCFNAAIKAGKLVTLPGITSLAKSLGARTVAARALECT 242
Query: 873 QEQPVFSEVVSDQEAVAAL 929
+E +FSEVV D EAV+A+
Sbjct: 243 KEFRIFSEVVEDAEAVSAV 261
>ref|NP_001071433.1| serine racemase [Bos taurus].
Length = 334
Score = 53.9 bits (128), Expect = 2e-07
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +3
Query: 195 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 362
TP+ S L+++ G ++ K E Q +GSFKIRG I L E V S
Sbjct: 26 TPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALNAIRGLISAHPEEKPRAVVAHSSG 85
Query: 363 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 542
R GIPA ++VP T P ++ GA + V E +E+ + +
Sbjct: 86 NHGQALSFAARLEGIPAYVIVPETAPNCKKLAIQAYGASI-VYSEQSEESRENITKRIAE 144
Query: 543 NSNWVYVPPFDDPLIWEGHASIVKEL 620
+ + V P +P + G +I E+
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIAMEV 170
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,357,679
Number of extensions: 1020741
Number of successful extensions: 6887
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6714
Number of HSP's successfully gapped: 4
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012844
(930 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine ... 426 e-119
Alignment gi|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1... 235 2e-62
>ref|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine deaminase [Sus scrofa].
Length = 328
Score = 426 bits (1094), Expect = e-119
Identities = 222/255 (87%), Positives = 222/255 (87%)
Frame = +3
Query: 165 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 344
MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF
Sbjct: 1 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 60
Query: 345 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 524
VCSS RKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA
Sbjct: 61 VCSSAGNAGLAAAYAARKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 120
Query: 525 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 704
KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKP
Sbjct: 121 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPGAIVLAVGGGGLLSGVAQGL 180
Query: 705 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 884
EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP
Sbjct: 181 LEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 240
Query: 885 VFSEVVSDQEAVAAL 929
VFSEVVSDQEAVAAL
Sbjct: 241 VFSEVVSDQEAVAAL 255
>ref|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1 [Sus scrofa].
Length = 335
Score = 235 bits (600), Expect = 2e-62
Identities = 126/254 (49%), Positives = 160/254 (62%)
Frame = +3
Query: 168 ASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFV 347
A G+P H+ TP+ +S LS++AGT V LK E+ QP+GSFKIRGIGH C+ +RG HFV
Sbjct: 15 ARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFV 74
Query: 348 CSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAK 527
C S R LGIPA IV+P +T ++RL+ EGA V++ G+ DEA A+
Sbjct: 75 CPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQ 134
Query: 528 DLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXX 707
+L KN+ WV VPPFD PLIWEGH+S+V ELK + P
Sbjct: 135 ELAKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPGALVLAVGGGGLLAGVSAGLA 193
Query: 708 EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPV 887
EVGW VPI+A+ET GA FNA+ KAG+LVTLP ITSVAK LG TV A+A+ +E +
Sbjct: 194 EVGWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEI 253
Query: 888 FSEVVSDQEAVAAL 929
FSEVV D EAV+A+
Sbjct: 254 FSEVVEDVEAVSAV 267
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,858,061
Number of extensions: 660722
Number of successful extensions: 4384
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4296
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012844
(930 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus... 331 4e-91
Alignment gi|NP_598663.2| serine dehydratase-like [Mus musculus]. 224 6e-59
Alignment gi|NP_001156783.1| serine racemase [Mus musculus]. 54 1e-07
Alignment gi|NP_038789.1| serine racemase [Mus musculus]. 54 1e-07
>ref|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus musculus].
Length = 327
Score = 331 bits (849), Expect = 4e-91
Identities = 167/255 (65%), Positives = 197/255 (77%)
Frame = +3
Query: 165 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 344
MA+ + LHV+TP+RDSM LSK+AGT+V+LK++SSQPSGSFKIRGIGHLCK A++GC HF
Sbjct: 1 MAAQESLHVKTPLRDSMALSKLAGTSVFLKMDSSQPSGSFKIRGIGHLCKMKAKQGCRHF 60
Query: 345 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 524
VCSS R+LGIPA IVVP+TTPALTI+RLKNEGA V+VVGE LDEAI++A
Sbjct: 61 VCSSAGNAGMATAYAARRLGIPATIVVPNTTPALTIERLKNEGATVEVVGEMLDEAIQVA 120
Query: 525 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 704
K L KNN WVY+ PFDDPLIWEGH S+VKELKET+SAKP
Sbjct: 121 KALEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPGAIVLSVGGGGLLCGVVQGL 180
Query: 705 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 884
EVGW DVPI+A+ET GA SF+A+ K GKLVTLP+ITSVAKALGV TV AQ +K+F E P
Sbjct: 181 REVGWEDVPIIAMETFGAHSFHAAIKEGKLVTLPKITSVAKALGVNTVGAQTLKLFYEHP 240
Query: 885 VFSEVVSDQEAVAAL 929
+FSEV+SDQEAV+AL
Sbjct: 241 IFSEVISDQEAVSAL 255
>ref|NP_598663.2| serine dehydratase-like [Mus musculus].
Length = 329
Score = 224 bits (572), Expect = 6e-59
Identities = 121/251 (48%), Positives = 157/251 (62%)
Frame = +3
Query: 177 QPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFVCSS 356
+P H TP+ +S LS+VAG V+LK E+ Q +GSFKIRGIGH C+ A+RGC H VCSS
Sbjct: 12 EPFHRVTPLLESWALSQVAGMPVFLKYENVQIAGSFKIRGIGHFCQQMAKRGCRHLVCSS 71
Query: 357 XXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLV 536
RKLGIP IV+P T ++RL+ EGA V++ G+ DEA A++L
Sbjct: 72 GGNAGIAAAYSARKLGIPVTIVLPEGTSVQVVRRLEGEGAEVQLTGKVWDEANVKAQELA 131
Query: 537 KNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVG 716
WV V PFD PLIWEGHAS+V+ELKE++ P EVG
Sbjct: 132 -TRDGWVNVSPFDHPLIWEGHASLVRELKESLGTPPGAVVLAVGGGGLLAGVTAGLLEVG 190
Query: 717 WGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPVFSE 896
W VPI+A+ET GA SFN++ +AG+ VTLP ITSVAK+LG TV A+ ++ +E V SE
Sbjct: 191 WQHVPIVAMETRGAHSFNSALQAGRPVTLPDITSVAKSLGAKTVAARTLECAKECEVLSE 250
Query: 897 VVSDQEAVAAL 929
VV D+EAV+A+
Sbjct: 251 VVEDREAVSAV 261
>ref|NP_001156783.1| serine racemase [Mus musculus].
Length = 339
Score = 54.3 bits (129), Expect = 1e-07
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Frame = +3
Query: 195 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 362
TP+ S L+++AG ++ K E Q +GSFKIRG I L E + V S
Sbjct: 26 TPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSSG 85
Query: 363 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 542
+ GIPA IVVP T P ++ GA + V + DE+ + +
Sbjct: 86 NHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYCDPSDESREKVTQRIMQ 144
Query: 543 NSNWVYVPPFDDPLIWEGHASIVKEL 620
+ + V P +P + G +I E+
Sbjct: 145 ETEGILVHPNQEPAVIAGQGTIALEV 170
>ref|NP_038789.1| serine racemase [Mus musculus].
Length = 339
Score = 54.3 bits (129), Expect = 1e-07
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Frame = +3
Query: 195 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 362
TP+ S L+++AG ++ K E Q +GSFKIRG I L E + V S
Sbjct: 26 TPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSSG 85
Query: 363 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 542
+ GIPA IVVP T P ++ GA + V + DE+ + +
Sbjct: 86 NHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYCDPSDESREKVTQRIMQ 144
Query: 543 NSNWVYVPPFDDPLIWEGHASIVKEL 620
+ + V P +P + G +I E+
Sbjct: 145 ETEGILVHPNQEPAVIAGQGTIALEV 170
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,528,531
Number of extensions: 858136
Number of successful extensions: 5708
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5556
Number of HSP's successfully gapped: 4
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012844
(930 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Hom... 351 5e-97
Alignment gi|NP_612441.1| serine dehydratase-like [Homo sapiens]. 239 3e-63
Alignment gi|NP_068766.1| serine racemase [Homo sapiens]. 54 2e-07
>ref|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Homo sapiens].
Length = 328
Score = 351 bits (901), Expect = 5e-97
Identities = 174/255 (68%), Positives = 201/255 (78%)
Frame = +3
Query: 165 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 344
M SG+PLHV+TPIRDSM LSK+AGT+VYLK++S+QPSGSFKIRGIGH CK WA++GC HF
Sbjct: 1 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHF 60
Query: 345 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 524
VCSS R+LG+PA IVVPSTTPALTI+RLKNEGA VKVVGE LDEA +LA
Sbjct: 61 VCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELA 120
Query: 525 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 704
K L KNN WVY+PPFDDPLIWEGHASIVKELKET+ KP
Sbjct: 121 KALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGL 180
Query: 705 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 884
EVGWGDVP++A+ET GA SF+A+T AGKLV+LP+ITSVAKALGV TV AQA+K+FQE P
Sbjct: 181 QEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHP 240
Query: 885 VFSEVVSDQEAVAAL 929
+FSEV+SDQEAVAA+
Sbjct: 241 IFSEVISDQEAVAAI 255
>ref|NP_612441.1| serine dehydratase-like [Homo sapiens].
Length = 329
Score = 239 bits (609), Expect = 3e-63
Identities = 129/259 (49%), Positives = 162/259 (62%)
Frame = +3
Query: 153 PVPAMASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERG 332
PV A +P HV TP+ +S LS+VAG V+LK E+ QPSGSFKIRGIGH C+ A++G
Sbjct: 4 PVAEHAKQEPFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKG 63
Query: 333 CEHFVCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEA 512
C H VCSS RKLGIPA IV+P +T +QRL+ EGA V++ G+ DEA
Sbjct: 64 CRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA 123
Query: 513 IKLAKDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXX 692
A++L K + W VPPFD PLIW+GHAS+V+ELK + P
Sbjct: 124 NLRAQELAKRD-GWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGV 182
Query: 693 XXXXXEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVF 872
EVGW VPI+A+ET GA FNA+ AGKLVTLP ITSVAK+LG TV A+A++
Sbjct: 183 VAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECM 242
Query: 873 QEQPVFSEVVSDQEAVAAL 929
Q + SEVV D EAV+A+
Sbjct: 243 QVCKIHSEVVEDTEAVSAV 261
>ref|NP_068766.1| serine racemase [Homo sapiens].
Length = 340
Score = 54.3 bits (129), Expect = 2e-07
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Frame = +3
Query: 195 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 362
TP+ S L+++ G ++ K E Q +GSFKIRG + L ER + V S
Sbjct: 26 TPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSG 85
Query: 363 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 542
+ GIPA IVVP T P ++ GA + V E DE+ + V
Sbjct: 86 NHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASI-VYCEPSDESRENVAKRVTE 144
Query: 543 NSNWVYVPPFDDPLIWEGHASIVKEL 620
+ + V P +P + G +I E+
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIALEV 170
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,232,072
Number of extensions: 1037446
Number of successful extensions: 7081
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6899
Number of HSP's successfully gapped: 3
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012844
(930 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 932 0.0
Sscrofa_Chr14 454 e-125
>Sscrofa_Chr07
|| Length = 134764511
Score = 932 bits (470), Expect = 0.0
Identities = 747/838 (89%), Gaps = 1/838 (0%)
Strand = Plus / Minus
Query: 93 ccagtccaaccctcccctgctcgcaggctctgtccagccacccaactcaccgtcttgcct 152
|||||| ||| ||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 24070807 ccagtctaactctcccctgctcacaggctctgtccagccacccagctcaccgccttggtg 24070748
Query: 153 cctgtgccagcaatggcgtcaggacaacccctgcacgtgagaacccctattcgtgacagt 212
|||||||||||||||||||||||| ||| ||||||| | | | |||||||||||||||
Sbjct: 24070747 cctgtgccagcaatggcgtcaggaaaacacctgcacattaagattcctattcgtgacagt 24070688
Query: 213 atgaccttatccaaagtggctggcaccacagtctatctcaagctagaaagttcccaaccc 272
|||||||| || ||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct: 24070687 atgaccttgtctaaagtggctggcaccacagtctatctccagctagaaagtttccagccc 24070628
Query: 273 tccggctctttcaagattcggggcatcggacacctctgcaaaacgtgggctgagcgaggc 332
|||||||| |||||||| ||||||| |||||| ||||| | |||| |||||||||||
Sbjct: 24070627 tccggctccttcaagatctggggcattaaacacctatgcaagatgtggtctgagcgaggc 24070568
Query: 333 tgtgaacatttcgtctgctcctctgcgggtaatgcaggcttggcagccgcctatgcagcc 392
|||||||||||| ||||||||||||| || || |||||| |||||||||||| |||||||
Sbjct: 24070567 tgtgaacatttcatctgctcctctgcaggcaaagcaggcatggcagccgcctgtgcagcc 24070508
Query: 393 aggaagctgggcatccctgccttgattgtcgtgcccagcaccacacctgccctcaccatc 452
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24070507 aggaagctgggcatccctgccttgattgttgtgcccagcaccacacctgccctcaccatc 24070448
Query: 453 cagcggctcaagaatgagggtgccatggtcaaggtggtgggtgagaccttggacgaggcc 512
||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24070447 cagtggttcaagaataagggtgccatggtcaaggtggggggtgagaccttggacgaggcc 24070388
Query: 513 atcaagctggccaaggacctggtgaagaacaactcaaactgggtctacgtccctcccttt 572
|||||||||||||||||||||||||| |||||| | |||||||||| ||||||||| |
Sbjct: 24070387 atcaagctggccaaggacctggtgaa-aacaaccgaggctgggtctacatccctccctct 24070329
Query: 573 gacgaccccctcatctgggaaggccacgcttccatcgtaaaggagctgaaggagacgatg 632
|| |||||||||||||| ||||||||| |||||| | || ||||||||||||| ||||
Sbjct: 24070328 gatgaccccctcatctgagaaggccacatgtccatcatgaaagagctgaaggagatgatg 24070269
Query: 633 agtgcaaagccgggggccatcgtgctggcagtggggggtggaggcctattgagcggagtg 692
||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||
Sbjct: 24070268 agtgcaaagccgggggccatcatactggcagtggggggtggaggcctgttgtatggagtg 24070209
Query: 693 gcccaggggctgctggaagtgggctggggagacgtgcccatcctcgccatagagaccatc 752
||||||||||||||||||||||||||||| || || ||||| | ||||| ||||||||
Sbjct: 24070208 gcccaggggctgctggaagtgggctggggcgatgtttccatcattgccatggagaccatt 24070149
Query: 753 ggagccgacagcttcaacgcttccaccaaggccggcaagctggtcaccctgccccggatt 812
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24070148 ggagccaacagcttcaatgcttccaccaaggccggcaagctggtcaccctgccccggatt 24070089
Query: 813 accagtgttgccaaagcgctgggcgtgaccaccgtgacagctcaggccatgaaggtgttc 872
|||||| || ||||||| ||||| |||||||||||||| ||| | |||||||| |||||
Sbjct: 24070088 accagtattaccaaagccctgggtgtgaccaccgtgacggcttaagccatgaaagtgttt 24070029
Query: 873 caggaacagcctgttttctctgaagtggtctcagaccaggaagctgtagccgctcttg 930
|||||| |||||||||||||| |||| |||| |||||||| ||||| ||| ||||||
Sbjct: 24070028 caggaaaagcctgttttctcttaagttatctcggaccaggaggctgtggcctctcttg 24069971
>Sscrofa_Chr14
|| Length = 153851969
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 589 gggaaggccacgcttccatcgtaaaggagctgaaggagacgatgagtgcaaagccggggg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859728 gggaaggccacgcttccatcgtaaaggagctgaaggagacgatgagtgcaaagccggggg 40859669
Query: 649 ccatcgtgctggcagtggggggtggaggcctattgagcggagtggcccaggggctgctgg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859668 ccatcgtgctggcagtggggggtggaggcctattgagcggagtggcccaggggctgctgg 40859609
Query: 709 aagtgggctggggagacgtgcccatcctcgccatagagaccatcggagccgacagcttca 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859608 aagtgggctggggagacgtgcccatcctcgccatagagaccatcggagccgacagcttca 40859549
Query: 769 acgcttccaccaaggccggcaagctggtcaccctgccccggattaccag 817
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859548 acgcttccaccaaggccggcaagctggtcaccctgccccggattaccag 40859500
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 1 ttatcaagtcgctttacctgcgctcctgttccgtctctccgtggatcgtctctccgtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866169 ttatcaagtcgctttacctgcgctcctgttccgtctctccgtggatcgtctctccgtgga 40866110
Query: 61 tcgtctacccagtctctccatctagaccatctccagtccaaccctcccctgctcgcaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866109 tcgtctacccagtctctccatctagaccatctccagtccaaccctcccctgctcgcaggc 40866050
Query: 121 tctgtccagccacccaactcaccgtcttgcctcctgtgccag 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866049 tctgtccagccacccaactcaccgtcttgcctcctgtgccag 40866008
Score = 307 bits (155), Expect = 6e-81
Identities = 158/159 (99%)
Strand = Plus / Minus
Query: 159 ccagcaatggcgtcaggacaacccctgcacgtgagaacccctattcgtgacagtatgacc 218
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40861431 ccagcgatggcgtcaggacaacccctgcacgtgagaacccctattcgtgacagtatgacc 40861372
Query: 219 ttatccaaagtggctggcaccacagtctatctcaagctagaaagttcccaaccctccggc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40861371 ttatccaaagtggctggcaccacagtctatctcaagctagaaagttcccaaccctccggc 40861312
Query: 279 tctttcaagattcggggcatcggacacctctgcaaaacg 317
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40861311 tctttcaagattcggggcatcggacacctctgcaaaacg 40861273
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 357 gcgggtaatgcaggcttggcagccgcctatgcagccaggaagctgggcatccctgccttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860545 gcgggtaatgcaggcttggcagccgcctatgcagccaggaagctgggcatccctgccttg 40860486
Query: 417 attgtcgtgcccagcaccacacctgccctcaccatccagcggctcaagaatgagggtgcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860485 attgtcgtgcccagcaccacacctgccctcaccatccagcggctcaagaatgagggtgcc 40860426
Query: 477 atggtcaaggtggtgggtgag 497
|||||||||||||||||||||
Sbjct: 40860425 atggtcaaggtggtgggtgag 40860405
Score = 222 bits (112), Expect = 3e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 815 cagtgttgccaaagcgctgggcgtgaccaccgtgacagctcaggccatgaaggtgttcca 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40857751 cagtgttgccaaagcgctgggcgtgaccaccgtgacagctcaggccatgaaggtgttcca 40857692
Query: 875 ggaacagcctgttttctctgaagtggtctcagaccaggaagctgtagccgctcttg 930
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 40857691 ggaacagcctgttttctctgaagtggtctcagaccaggaggctgtagccgctcttg 40857636
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 496 agaccttggacgaggccatcaagctggccaaggacctggtgaagaacaactcaaactggg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860305 agaccttggacgaggccatcaagctggccaaggacctggtgaagaacaactcaaactggg 40860246
Query: 556 tctacgtccctccctttgacgaccccctcatctgg 590
|||||||||||||||||||||||||||||||||||
Sbjct: 40860245 tctacgtccctccctttgacgaccccctcatctgg 40860211
Score = 81.8 bits (41), Expect = 6e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 317 gtgggctgagcgaggctgtgaacatttcgtctgctcctctg 357
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860807 gtgggctgagcgaggctgtgaacatttcgtctgctcctctg 40860767
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,161,591
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 8
Length of query: 930
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 909
Effective length of database: 2,808,413,156
Effective search space: 2552847558804
Effective search space used: 2552847558804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)