Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012845
(1343 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [... 491 e-139
Alignment gi|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine ... 385 e-107
Alignment gi|NP_001092465.1| serine dehydratase-like [Bos taurus]. 319 4e-87
Alignment gi|NP_001071433.1| serine racemase [Bos taurus]. 67 5e-11
>ref|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [Bos taurus].
Length = 327
Score = 491 bits (1265), Expect = e-139
Identities = 252/322 (78%), Positives = 272/322 (84%)
Frame = +2
Query: 167 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 346
M SG+PLH+ TP+RDSMTLSKVAGTT YLKL+S+QPSGSFKIRGIGHLCK WAERGCEHF
Sbjct: 1 MMSGRPLHMETPVRDSMTLSKVAGTTAYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHF 60
Query: 347 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 526
VCSS RKLGIP+ IVVPSTTPALTIQRLKNEGA VKVVGETLDEAI++A
Sbjct: 61 VCSSAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGETLDEAIRVA 120
Query: 527 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 706
KDL KNNS WVYVPPFDDPLIWEGH+SIVKELKETM+ KP
Sbjct: 121 KDLEKNNSGWVYVPPFDDPLIWEGHSSIVKELKETMTEKPGAIVLAVGGGGLLCGVVQGL 180
Query: 707 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 886
EVGW DVP++ +ETIGA+SF+ASTKAGKLVTLP ITSVAKALGVTTV AQAMKV++E P
Sbjct: 181 AEVGWRDVPVITMETIGAESFHASTKAGKLVTLPCITSVAKALGVTTVAAQAMKVYREHP 240
Query: 887 VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV 1066
+FSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYS V+QKLQGEGKL TPLSSLVV
Sbjct: 241 IFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSNVIQKLQGEGKLRTPLSSLVV 300
Query: 1067 IVCGGSNISLAQLPALKEQLGM 1132
IVCGGSNISLAQL ALK+QLGM
Sbjct: 301 IVCGGSNISLAQLVALKKQLGM 322
>ref|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine deaminase-like, partial
[Bos taurus].
Length = 259
Score = 385 bits (988), Expect = e-107
Identities = 195/259 (75%), Positives = 213/259 (82%)
Frame = +2
Query: 167 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 346
M SG+PLH+ TP+RDSMTLSKVAGTTVYLKL+S+QPSGSFKIRGIGHLCK WAERGCEHF
Sbjct: 1 MMSGRPLHMETPVRDSMTLSKVAGTTVYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHF 60
Query: 347 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 526
VCSS RKLGIP+ IVVPSTTPALTIQRLKNEGA VKVVGETLDEAI++A
Sbjct: 61 VCSSAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGETLDEAIRVA 120
Query: 527 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 706
KDL KNNS WVYVPPFDDPLIWEGH+SIVKELKETM+ KP
Sbjct: 121 KDLEKNNSGWVYVPPFDDPLIWEGHSSIVKELKETMTEKPGAIVLAVGGGGLLCGVVQGL 180
Query: 707 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 886
EVGW DVP++ +ETIGA+SF+ASTKAGKLVTLP ITSVAKALGVTTV AQAMKV++E P
Sbjct: 181 AEVGWRDVPVITMETIGAESFHASTKAGKLVTLPCITSVAKALGVTTVAAQAMKVYREHP 240
Query: 887 VFSEVVSDQEAVAALEKFV 943
+FSEVVSDQEAVAALEKFV
Sbjct: 241 IFSEVVSDQEAVAALEKFV 259
>ref|NP_001092465.1| serine dehydratase-like [Bos taurus].
Length = 329
Score = 319 bits (817), Expect = 4e-87
Identities = 166/325 (51%), Positives = 217/325 (66%)
Frame = +2
Query: 155 PVPAMASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERG 334
P+ A G+P H+ TP+ +S LS+VAG V+LK E+ QP+GSFKIRGIGH C+ A++G
Sbjct: 4 PLEECAEGEPFHIVTPLLESWALSQVAGMPVFLKYENVQPAGSFKIRGIGHFCQEVAKKG 63
Query: 335 CEHFVCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEA 514
C H VCSS RKL IPA IV+P T ++RL+ EGA V++ G+ +EA
Sbjct: 64 CRHLVCSSGGNAGIAAAYAARKLRIPATIVLPEGTSVKVVKRLQGEGAEVQLTGKIWEEA 123
Query: 515 IKLAKDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXX 694
A++L KN+ WV +PPFD PLIWEGH S+V+ELK + P
Sbjct: 124 NLRAQELAKNDG-WVNLPPFDHPLIWEGHVSLVRELKAALGTPPGALVLAVGGGGLLAGV 182
Query: 695 XXXXXEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVF 874
EVGW VPI+A+ET GA FNA+ KAGKLVTLP ITS+AK+LG TV A+A++
Sbjct: 183 SAGLAEVGWQHVPIIAMETQGAHCFNAAIKAGKLVTLPGITSLAKSLGARTVAARALECT 242
Query: 875 QEQPVFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLS 1054
+E +FSEVV D EAV+A+++F+DDE+ LVEPACGAALAA+YS ++ KLQ EG LC +
Sbjct: 243 KEFRIFSEVVEDAEAVSAVQRFLDDERTLVEPACGAALAAIYSGLLGKLQAEGHLCPSPA 302
Query: 1055 SLVVIVCGGSNISLAQLPALKEQLG 1129
+VVIVCGG++I +L ALK QLG
Sbjct: 303 PVVVIVCGGNSIDSGELQALKAQLG 327
>ref|NP_001071433.1| serine racemase [Bos taurus].
Length = 334
Score = 66.6 bits (161), Expect = 5e-11
Identities = 71/313 (22%), Positives = 117/313 (37%), Gaps = 4/313 (1%)
Frame = +2
Query: 197 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 364
TP+ S L+++ G ++ K E Q +GSFKIRG I L E V S
Sbjct: 26 TPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALNAIRGLISAHPEEKPRAVVAHSSG 85
Query: 365 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 544
R GIPA ++VP T P ++ GA + V E +E+ + +
Sbjct: 86 NHGQALSFAARLEGIPAYVIVPETAPNCKKLAIQAYGASI-VYSEQSEESRENITKRIAE 144
Query: 545 NSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVGWG 724
+ + V P +P + G +I E+ + +
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIAMEVLNQVPL--VDALVVPVGGGGMLAGIAVTVKALRP 202
Query: 725 DVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPVFSEVV 904
V + A E + AD S G+L P +++ + ++ V
Sbjct: 203 SVKVYAAEPLNADDCYQSKLKGELTPNPYPPETIADGIKSSIGLNTWPIIRDLVDDVFTV 262
Query: 905 SDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVIVCGGS 1084
++ E A + + K+L+EP G +A V SQ + + E K + IV G
Sbjct: 263 TEDEIKYATQLVWERMKLLIEPTAGVGVAVVLSQHFRTVPAEVK-------NICIVLSGG 315
Query: 1085 NISLAQLPALKEQ 1123
N+ L L +K+Q
Sbjct: 316 NVDLTSLTWVKKQ 328
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,835,689
Number of extensions: 1687200
Number of successful extensions: 11145
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10877
Number of HSP's successfully gapped: 4
Length of query: 447
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 342
Effective length of database: 14,207,134
Effective search space: 4858839828
Effective search space used: 4858839828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012845
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012845
(1343 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis... 471 e-133
Alignment gi|XP_543408.2| PREDICTED: similar to serine dehydratase-like [... 315 6e-86
Alignment gi|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2... 72 9e-13
Alignment gi|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1... 71 3e-12
>ref|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis familiaris].
Length = 327
Score = 471 bits (1212), Expect = e-133
Identities = 240/326 (73%), Positives = 268/326 (82%)
Frame = +2
Query: 167 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 346
M G+PLHV+TPIRDSM+LSKVAGT+VYLK++S+QPSGSFKIRGIGHLCK WAE+GCEHF
Sbjct: 1 MTPGEPLHVKTPIRDSMSLSKVAGTSVYLKMDSAQPSGSFKIRGIGHLCKMWAEQGCEHF 60
Query: 347 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 526
VCSS RKLGIPA IVVPSTTPALTI+RLKNEGA+VKVVGE LDEA +LA
Sbjct: 61 VCSSAGNAGMAAAYAARKLGIPATIVVPSTTPALTIERLKNEGAIVKVVGEMLDEAFELA 120
Query: 527 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 706
K L KNN WVY+PPFDDPLIWEGH SIVKELKET+SAKP
Sbjct: 121 KALAKNNPGWVYIPPFDDPLIWEGHTSIVKELKETLSAKPGAIALSVGGGGLLCGVVQGL 180
Query: 707 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 886
EVGWGDVP++A+ET GA SF+A+T AGKLV+L ++TSVAKAL V TV AQA+K+FQE P
Sbjct: 181 QEVGWGDVPVIAMETAGAHSFHAATTAGKLVSLSQVTSVAKALCVKTVGAQALKLFQEHP 240
Query: 887 VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV 1066
+FSEV+SDQEAVAA+EKFVDDEKILVEPACGAALAAVYS+VVQKLQGEGKL PLSSLVV
Sbjct: 241 IFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSRVVQKLQGEGKLQAPLSSLVV 300
Query: 1067 IVCGGSNISLAQLPALKEQLGMKSGP 1144
IVCGGSNISL+QL ALKEQLGM P
Sbjct: 301 IVCGGSNISLSQLRALKEQLGMNGLP 326
>ref|XP_543408.2| PREDICTED: similar to serine dehydratase-like [Canis familiaris].
Length = 329
Score = 315 bits (807), Expect = 6e-86
Identities = 165/319 (51%), Positives = 216/319 (67%)
Frame = +2
Query: 170 ASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFV 349
A + HV TP+ +S LS+VAG TV+LK E+ QP+GSFKIRGIGH C+ A++GC H V
Sbjct: 9 AKAEHFHVVTPLLESWALSQVAGVTVFLKCENVQPAGSFKIRGIGHFCQEVAKKGCRHLV 68
Query: 350 CSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAK 529
CSS RKLGIPA IV+P T ++RL+ EGA V++ G+ DEA A+
Sbjct: 69 CSSGGNAGIAAAYAARKLGIPATIVLPEGTSPQVVKRLQGEGAEVQLTGKVWDEASLKAQ 128
Query: 530 DLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXX 709
+L K + WV V PFD LIWEGHAS+V+ELK + P
Sbjct: 129 ELAKRDG-WVNVHPFDHRLIWEGHASLVRELKAALGTPPGALVLAVGGGGLLAGVSAGLA 187
Query: 710 EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPV 889
EVGW VPI+A+ET GA FNA+ KAG+LVTLP ITSVAK+LG TV A+A++ QE +
Sbjct: 188 EVGWQHVPIIAVETRGAHCFNAAIKAGRLVTLPEITSVAKSLGAKTVAARALECTQELEI 247
Query: 890 FSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVI 1069
SEVV D +AV+A+++F+DDE+ILVEPACGAALA +YS ++++LQ EG+L +PL+S+VVI
Sbjct: 248 ISEVVEDVQAVSAVQRFLDDERILVEPACGAALAVIYSGLLERLQAEGRLHSPLASVVVI 307
Query: 1070 VCGGSNISLAQLPALKEQL 1126
VCGG++I+ L ALK QL
Sbjct: 308 VCGGNSINSGGLQALKAQL 326
>ref|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2 [Canis familiaris].
Length = 314
Score = 72.4 bits (176), Expect = 9e-13
Identities = 77/312 (24%), Positives = 121/312 (38%), Gaps = 4/312 (1%)
Frame = +2
Query: 197 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 364
TP+ S L++V G ++ K E Q +GSFKIRG I L +E + V S
Sbjct: 26 TPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSSG 85
Query: 365 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 544
+ GIPA IVVP T P ++ GA + V E DE+ + +
Sbjct: 86 NHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYSEQNDESRENLTRRIME 144
Query: 545 NSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVGWG 724
+ + V P +P + G +I E+ + +P
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIAMEVL-NQALRP-------------------------- 177
Query: 725 DVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPVFSEVV 904
V + A E + AD S G+L P +++ + ++ V
Sbjct: 178 SVKVYAAEPLNADDCYQSKLKGELTPNPYPPETIADGVKSSIGLNTWPIIRDLVDDVFTV 237
Query: 905 SDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVIVCGGS 1084
+++E A + + K+L+EP G +AAV SQ Q + E K + IV G
Sbjct: 238 TEEEIKYATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVK-------NICIVLSGG 290
Query: 1085 NISLAQLPALKE 1120
N+ L L +KE
Sbjct: 291 NVDLTSLTWVKE 302
>ref|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1 [Canis familiaris].
Length = 339
Score = 70.9 bits (172), Expect = 3e-12
Identities = 76/312 (24%), Positives = 120/312 (38%), Gaps = 4/312 (1%)
Frame = +2
Query: 197 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 364
TP+ S L++V G ++ K E Q +GSFKIRG I L +E + V S
Sbjct: 26 TPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSSG 85
Query: 365 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 544
+ GIPA IVVP T P ++ GA + V E DE+ + +
Sbjct: 86 NHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYSEQNDESRENLTRRIME 144
Query: 545 NSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVGWG 724
+ + V P +P + G +I E+ + +
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIAMEVLNQVPL--VDALVVPVGGGGMVAGIAITVKALRP 202
Query: 725 DVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPVFSEVV 904
V + A E + AD S G+L P +++ + ++ V
Sbjct: 203 SVKVYAAEPLNADDCYQSKLKGELTPNPYPPETIADGVKSSIGLNTWPIIRDLVDDVFTV 262
Query: 905 SDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVIVCGGS 1084
+++E A + + K+L+EP G +AAV SQ Q + E K + IV G
Sbjct: 263 TEEEIKYATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVK-------NICIVLSGG 315
Query: 1085 NISLAQLPALKE 1120
N+ L L +KE
Sbjct: 316 NVDLTSLTWVKE 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,299,133
Number of extensions: 1746452
Number of successful extensions: 11931
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11638
Number of HSP's successfully gapped: 6
Length of query: 447
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 341
Effective length of database: 15,340,888
Effective search space: 5231242808
Effective search space used: 5231242808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012845
(1343 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine ... 566 e-162
Alignment gi|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1... 315 5e-86
>ref|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine deaminase [Sus scrofa].
Length = 328
Score = 566 bits (1460), Expect = e-162
Identities = 295/328 (89%), Positives = 295/328 (89%)
Frame = +2
Query: 167 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 346
MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF
Sbjct: 1 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 60
Query: 347 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 526
VCSS RKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA
Sbjct: 61 VCSSAGNAGLAAAYAARKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 120
Query: 527 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 706
KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKP
Sbjct: 121 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPGAIVLAVGGGGLLSGVAQGL 180
Query: 707 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 886
EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP
Sbjct: 181 LEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 240
Query: 887 VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV 1066
VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV
Sbjct: 241 VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV 300
Query: 1067 IVCGGSNISLAQLPALKEQLGMKSGPLH 1150
IVCGGSNISLAQLPALKEQLGMKSGPLH
Sbjct: 301 IVCGGSNISLAQLPALKEQLGMKSGPLH 328
>ref|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1 [Sus scrofa].
Length = 335
Score = 315 bits (806), Expect = 5e-86
Identities = 165/320 (51%), Positives = 214/320 (66%)
Frame = +2
Query: 170 ASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFV 349
A G+P H+ TP+ +S LS++AGT V LK E+ QP+GSFKIRGIGH C+ +RG HFV
Sbjct: 15 ARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFV 74
Query: 350 CSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAK 529
C S R LGIPA IV+P +T ++RL+ EGA V++ G+ DEA A+
Sbjct: 75 CPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQ 134
Query: 530 DLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXX 709
+L KN+ WV VPPFD PLIWEGH+S+V ELK + P
Sbjct: 135 ELAKNDG-WVNVPPFDHPLIWEGHSSLVHELKAELRTPPGALVLAVGGGGLLAGVSAGLA 193
Query: 710 EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPV 889
EVGW VPI+A+ET GA FNA+ KAG+LVTLP ITSVAK LG TV A+A+ +E +
Sbjct: 194 EVGWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEI 253
Query: 890 FSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVI 1069
FSEVV D EAV+A+++F+DD+++LVEPACGAALAA+YS ++ +LQ EG+L L S+VVI
Sbjct: 254 FSEVVEDVEAVSAVQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLRPSLDSVVVI 313
Query: 1070 VCGGSNISLAQLPALKEQLG 1129
VCGG+NI +L AL+ QLG
Sbjct: 314 VCGGNNIDSGELQALRAQLG 333
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,456,495
Number of extensions: 1092174
Number of successful extensions: 7145
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7007
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,804,438
Effective search space: 3037531110
Effective search space used: 3037531110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012845
(1343 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus... 438 e-123
Alignment gi|NP_598663.2| serine dehydratase-like [Mus musculus]. 308 5e-84
Alignment gi|NP_001156783.1| serine racemase [Mus musculus]. 65 1e-10
Alignment gi|NP_038789.1| serine racemase [Mus musculus]. 65 1e-10
>ref|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus musculus].
Length = 327
Score = 438 bits (1126), Expect = e-123
Identities = 225/326 (69%), Positives = 260/326 (79%)
Frame = +2
Query: 167 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 346
MA+ + LHV+TP+RDSM LSK+AGT+V+LK++SSQPSGSFKIRGIGHLCK A++GC HF
Sbjct: 1 MAAQESLHVKTPLRDSMALSKLAGTSVFLKMDSSQPSGSFKIRGIGHLCKMKAKQGCRHF 60
Query: 347 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 526
VCSS R+LGIPA IVVP+TTPALTI+RLKNEGA V+VVGE LDEAI++A
Sbjct: 61 VCSSAGNAGMATAYAARRLGIPATIVVPNTTPALTIERLKNEGATVEVVGEMLDEAIQVA 120
Query: 527 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 706
K L KNN WVY+ PFDDPLIWEGH S+VKELKET+SAKP
Sbjct: 121 KALEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPGAIVLSVGGGGLLCGVVQGL 180
Query: 707 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 886
EVGW DVPI+A+ET GA SF+A+ K GKLVTLP+ITSVAKALGV TV AQ +K+F E P
Sbjct: 181 REVGWEDVPIIAMETFGAHSFHAAIKEGKLVTLPKITSVAKALGVNTVGAQTLKLFYEHP 240
Query: 887 VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV 1066
+FSEV+SDQEAV+ALEKFVDDEKILVEPACGAALAAVYS+VV +LQ EG+L TPL+SLVV
Sbjct: 241 IFSEVISDQEAVSALEKFVDDEKILVEPACGAALAAVYSRVVCRLQDEGRLQTPLASLVV 300
Query: 1067 IVCGGSNISLAQLPALKEQLGMKSGP 1144
IVCGGSNISLAQL ALK QLG+ P
Sbjct: 301 IVCGGSNISLAQLQALKVQLGLNGLP 326
>ref|NP_598663.2| serine dehydratase-like [Mus musculus].
Length = 329
Score = 308 bits (790), Expect = 5e-84
Identities = 163/317 (51%), Positives = 214/317 (67%)
Frame = +2
Query: 179 QPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFVCSS 358
+P H TP+ +S LS+VAG V+LK E+ Q +GSFKIRGIGH C+ A+RGC H VCSS
Sbjct: 12 EPFHRVTPLLESWALSQVAGMPVFLKYENVQIAGSFKIRGIGHFCQQMAKRGCRHLVCSS 71
Query: 359 XXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLV 538
RKLGIP IV+P T ++RL+ EGA V++ G+ DEA A++L
Sbjct: 72 GGNAGIAAAYSARKLGIPVTIVLPEGTSVQVVRRLEGEGAEVQLTGKVWDEANVKAQELA 131
Query: 539 KNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVG 718
+ WV V PFD PLIWEGHAS+V+ELKE++ P EVG
Sbjct: 132 TRDG-WVNVSPFDHPLIWEGHASLVRELKESLGTPPGAVVLAVGGGGLLAGVTAGLLEVG 190
Query: 719 WGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPVFSE 898
W VPI+A+ET GA SFN++ +AG+ VTLP ITSVAK+LG TV A+ ++ +E V SE
Sbjct: 191 WQHVPIVAMETRGAHSFNSALQAGRPVTLPDITSVAKSLGAKTVAARTLECAKECEVLSE 250
Query: 899 VVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVIVCG 1078
VV D+EAV+A+++F+DDE++LVEPACGAALAA+YS ++ +LQ EG+L + L+S+VVIVCG
Sbjct: 251 VVEDREAVSAVQRFLDDERMLVEPACGAALAAIYSGILWRLQAEGRLSSALASVVVIVCG 310
Query: 1079 GSNISLAQLPALKEQLG 1129
G+NIS QL LK QLG
Sbjct: 311 GNNISSQQLQELKIQLG 327
>ref|NP_001156783.1| serine racemase [Mus musculus].
Length = 339
Score = 65.1 bits (157), Expect = 1e-10
Identities = 77/308 (25%), Positives = 119/308 (38%), Gaps = 5/308 (1%)
Frame = +2
Query: 197 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 364
TP+ S L+++AG ++ K E Q +GSFKIRG I L E + V S
Sbjct: 26 TPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSSG 85
Query: 365 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 544
+ GIPA IVVP T P ++ GA + V + DE+ + +
Sbjct: 86 NHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYCDPSDESREKVTQRIMQ 144
Query: 545 NSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVGWG 724
+ + V P +P + G +I E+ + +
Sbjct: 145 ETEGILVHPNQEPAVIAGQGTIALEVLNQVPL--VDALVVPVGGGGMVAGIAITIKALKP 202
Query: 725 DVPILAIETIGADSFNASTKAGKLV-TLPRITSVAKALGVTTVTAQAMKVFQEQPVFSEV 901
V + A E AD S G+L L ++A + +++ + ++
Sbjct: 203 SVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGV-KSSIGLNTWPIIRDLVDDVFT 261
Query: 902 VSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVIVCGG 1081
V++ E A + K+L+EP G ALAAV SQ Q + E K V IV G
Sbjct: 262 VTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQTVSPEVK-------NVCIVLSG 314
Query: 1082 SNISLAQL 1105
N+ L L
Sbjct: 315 GNVDLTSL 322
>ref|NP_038789.1| serine racemase [Mus musculus].
Length = 339
Score = 65.1 bits (157), Expect = 1e-10
Identities = 77/308 (25%), Positives = 119/308 (38%), Gaps = 5/308 (1%)
Frame = +2
Query: 197 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 364
TP+ S L+++AG ++ K E Q +GSFKIRG I L E + V S
Sbjct: 26 TPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSSG 85
Query: 365 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 544
+ GIPA IVVP T P ++ GA + V + DE+ + +
Sbjct: 86 NHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYCDPSDESREKVTQRIMQ 144
Query: 545 NSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVGWG 724
+ + V P +P + G +I E+ + +
Sbjct: 145 ETEGILVHPNQEPAVIAGQGTIALEVLNQVPL--VDALVVPVGGGGMVAGIAITIKALKP 202
Query: 725 DVPILAIETIGADSFNASTKAGKLV-TLPRITSVAKALGVTTVTAQAMKVFQEQPVFSEV 901
V + A E AD S G+L L ++A + +++ + ++
Sbjct: 203 SVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGV-KSSIGLNTWPIIRDLVDDVFT 261
Query: 902 VSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVVIVCGG 1081
V++ E A + K+L+EP G ALAAV SQ Q + E K V IV G
Sbjct: 262 VTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQTVSPEVK-------NVCIVLSG 314
Query: 1082 SNISLAQL 1105
N+ L L
Sbjct: 315 GNVDLTSL 322
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,163,847
Number of extensions: 1402986
Number of successful extensions: 8726
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8514
Number of HSP's successfully gapped: 4
Length of query: 447
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 342
Effective length of database: 12,463,779
Effective search space: 4262612418
Effective search space used: 4262612418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012845
(1343 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Hom... 461 e-130
Alignment gi|NP_612441.1| serine dehydratase-like [Homo sapiens]. 315 5e-86
Alignment gi|NP_068766.1| serine racemase [Homo sapiens]. 65 2e-10
>ref|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Homo sapiens].
Length = 328
Score = 461 bits (1186), Expect = e-130
Identities = 234/322 (72%), Positives = 262/322 (81%)
Frame = +2
Query: 167 MASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHF 346
M SG+PLHV+TPIRDSM LSK+AGT+VYLK++S+QPSGSFKIRGIGH CK WA++GC HF
Sbjct: 1 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHF 60
Query: 347 VCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLA 526
VCSS R+LG+PA IVVPSTTPALTI+RLKNEGA VKVVGE LDEA +LA
Sbjct: 61 VCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELA 120
Query: 527 KDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXX 706
K L KNN WVY+PPFDDPLIWEGHASIVKELKET+ KP
Sbjct: 121 KALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGL 180
Query: 707 XEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQP 886
EVGWGDVP++A+ET GA SF+A+T AGKLV+LP+ITSVAKALGV TV AQA+K+FQE P
Sbjct: 181 QEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHP 240
Query: 887 VFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLSSLVV 1066
+FSEV+SDQEAVAA+EKFVDDEKILVEPACGAALAAVYS V+QKLQ EG L TPL SLVV
Sbjct: 241 IFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV 300
Query: 1067 IVCGGSNISLAQLPALKEQLGM 1132
IVCGGSNISLAQL ALKEQLGM
Sbjct: 301 IVCGGSNISLAQLRALKEQLGM 322
>ref|NP_612441.1| serine dehydratase-like [Homo sapiens].
Length = 329
Score = 315 bits (808), Expect = 5e-86
Identities = 168/325 (51%), Positives = 216/325 (66%)
Frame = +2
Query: 155 PVPAMASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERG 334
PV A +P HV TP+ +S LS+VAG V+LK E+ QPSGSFKIRGIGH C+ A++G
Sbjct: 4 PVAEHAKQEPFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKG 63
Query: 335 CEHFVCSSXXXXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEA 514
C H VCSS RKLGIPA IV+P +T +QRL+ EGA V++ G+ DEA
Sbjct: 64 CRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA 123
Query: 515 IKLAKDLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXX 694
A++L K + W VPPFD PLIW+GHAS+V+ELK + P
Sbjct: 124 NLRAQELAKRDG-WENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGV 182
Query: 695 XXXXXEVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVF 874
EVGW VPI+A+ET GA FNA+ AGKLVTLP ITSVAK+LG TV A+A++
Sbjct: 183 VAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECM 242
Query: 875 QEQPVFSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCTPLS 1054
Q + SEVV D EAV+A+++ +DDE++LVEPACGAALAA+YS ++++LQ EG L L+
Sbjct: 243 QVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLT 302
Query: 1055 SLVVIVCGGSNISLAQLPALKEQLG 1129
S+VVIVCGG+NI+ +L ALK LG
Sbjct: 303 SVVVIVCGGNNINSRELQALKTHLG 327
>ref|NP_068766.1| serine racemase [Homo sapiens].
Length = 340
Score = 64.7 bits (156), Expect = 2e-10
Identities = 79/317 (24%), Positives = 119/317 (37%), Gaps = 17/317 (5%)
Frame = +2
Query: 197 TPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRG----IGHLCKTWAERGCEHFVCSSXX 364
TP+ S L+++ G ++ K E Q +GSFKIRG + L ER + V S
Sbjct: 26 TPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSG 85
Query: 365 XXXXXXXXXXRKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAKDLVKN 544
+ GIPA IVVP T P ++ GA + V E DE+ + V
Sbjct: 86 NHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASI-VYCEPSDESRENVAKRVTE 144
Query: 545 NSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPXXXXXXXXXXXXXXXXXXXXXEVGWG 724
+ + V P +P + G +I E+ + +
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIALEVLNQVPL--VDALVVPVGGGGMLAGIAITVKALKP 202
Query: 725 DVPILAIETIGADSFNASTKAGKLVTLPRI-------TSVAKALGVTTVTAQAMKVFQEQ 883
V + A E AD S GKL +P + V ++G+ T
Sbjct: 203 SVKVYAAEPSNADDCYQSKLKGKL--MPNLYPPETIADGVKSSIGLNT-----------W 249
Query: 884 PVFSEVVSD------QEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKLCT 1045
P+ ++V D E A + + K+L+EP G +AAV SQ Q + E K
Sbjct: 250 PIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVK--- 306
Query: 1046 PLSSLVVIVCGGSNISL 1096
+ IV G N+ L
Sbjct: 307 ----NICIVLSGGNVDL 319
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,090,947
Number of extensions: 1705835
Number of successful extensions: 10886
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10615
Number of HSP's successfully gapped: 4
Length of query: 447
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 341
Effective length of database: 14,802,980
Effective search space: 5047816180
Effective search space used: 5047816180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012845
(1343 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1326 0.0
Sscrofa_Chr14 793 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1326 bits (669), Expect = 0.0
Identities = 1107/1249 (88%), Gaps = 8/1249 (0%)
Strand = Plus / Minus
Query: 95 ccagtccaaccctcccctgctcgcaggctctgtccagccacccaactcaccgtcttgcct 154
|||||| ||| ||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 24070807 ccagtctaactctcccctgctcacaggctctgtccagccacccagctcaccgccttggtg 24070748
Query: 155 cctgtgccagcaatggcgtcaggacaacccctgcacgtgagaacccctattcgtgacagt 214
|||||||||||||||||||||||| ||| ||||||| | | | |||||||||||||||
Sbjct: 24070747 cctgtgccagcaatggcgtcaggaaaacacctgcacattaagattcctattcgtgacagt 24070688
Query: 215 atgaccttatccaaagtggctggcaccacagtctatctcaagctagaaagttcccaaccc 274
|||||||| || ||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct: 24070687 atgaccttgtctaaagtggctggcaccacagtctatctccagctagaaagtttccagccc 24070628
Query: 275 tccggctctttcaagattcggggcatcggacacctctgcaaaacgtgggctgagcgaggc 334
|||||||| |||||||| ||||||| |||||| ||||| | |||| |||||||||||
Sbjct: 24070627 tccggctccttcaagatctggggcattaaacacctatgcaagatgtggtctgagcgaggc 24070568
Query: 335 tgtgaacatttcgtctgctcctctgcgggtaatgcaggcttggcagccgcctatgcagcc 394
|||||||||||| ||||||||||||| || || |||||| |||||||||||| |||||||
Sbjct: 24070567 tgtgaacatttcatctgctcctctgcaggcaaagcaggcatggcagccgcctgtgcagcc 24070508
Query: 395 aggaagctgggcatccctgccttgattgtcgtgcccagcaccacacctgccctcaccatc 454
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24070507 aggaagctgggcatccctgccttgattgttgtgcccagcaccacacctgccctcaccatc 24070448
Query: 455 cagcggctcaagaatgagggtgccatggtcaaggtggtgggtgagaccttggacgaggcc 514
||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24070447 cagtggttcaagaataagggtgccatggtcaaggtggggggtgagaccttggacgaggcc 24070388
Query: 515 atcaagctggccaaggacctggtgaagaacaactcaaactgggtctacgtccctcccttt 574
|||||||||||||||||||||||||| |||||| | |||||||||| ||||||||| |
Sbjct: 24070387 atcaagctggccaaggacctggtgaa-aacaaccgaggctgggtctacatccctccctct 24070329
Query: 575 gacgaccccctcatctgggaaggccacgcttccatcgtaaaggagctgaaggagacgatg 634
|| |||||||||||||| ||||||||| |||||| | || ||||||||||||| ||||
Sbjct: 24070328 gatgaccccctcatctgagaaggccacatgtccatcatgaaagagctgaaggagatgatg 24070269
Query: 635 agtgcaaagccgggggccatcgtgctggcagtggggggtggaggcctattgagcggagtg 694
||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||
Sbjct: 24070268 agtgcaaagccgggggccatcatactggcagtggggggtggaggcctgttgtatggagtg 24070209
Query: 695 gcccaggggctgctggaagtgggctggggagacgtgcccatcctcgccatagagaccatc 754
||||||||||||||||||||||||||||| || || ||||| | ||||| ||||||||
Sbjct: 24070208 gcccaggggctgctggaagtgggctggggcgatgtttccatcattgccatggagaccatt 24070149
Query: 755 ggagccgacagcttcaacgcttccaccaaggccggcaagctggtcaccctgccccggatt 814
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24070148 ggagccaacagcttcaatgcttccaccaaggccggcaagctggtcaccctgccccggatt 24070089
Query: 815 accagtgttgccaaagcgctgggcgtgaccaccgtgacagctcaggccatgaaggtgttc 874
|||||| || ||||||| ||||| |||||||||||||| ||| | |||||||| |||||
Sbjct: 24070088 accagtattaccaaagccctgggtgtgaccaccgtgacggcttaagccatgaaagtgttt 24070029
Query: 875 caggaacagcctgttttctctgaagtggtctcagaccaggaggctgtagccgctcttgag 934
|||||| |||||||||||||| |||| |||| |||||||||||||| ||| ||||||||
Sbjct: 24070028 caggaaaagcctgttttctcttaagttatctcggaccaggaggctgtggcctctcttgag 24069969
Query: 935 aagtttgtggatgatgagaagatcctggtagagcctgcctgtggggcagccctggccgcc 994
|| |||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||
Sbjct: 24069968 aaatttgtggatgatgatatgatcctggtagagcttgcctgtggggcagccctggccacc 24069909
Query: 995 gtctacagccaggtggttcagaagctgcagggagaggggaaactctgcaccccgctgtcc 1054
|||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 24069908 aactacggcaaggtggttcagaagctgcagggagagggcaaactctgcacccagctgtcc 24069849
Query: 1055 tccctcgtggtcatcgtctgcgggggcagcaacatcagcctggcccagctgccagccctc 1114
|||||||||||||| ||||| ||| |||||||||||||||| |||||||||| ||||||
Sbjct: 24069848 tccctcgtggtcattgtctgtgggagcagcaacatcagcct-gcccagctgctggccctc 24069790
Query: 1115 aaggaacagctgggcatgaagagcgggcctctccattgaagacccaccacaccccctcct 1174
|||||||||||||||||||||| | |||||| ||| ||| |||| | |||| |||
Sbjct: 24069789 aaggaacagctgggcatgaagaacaggcctccccagtgaggacc-----cctccccgcct 24069735
Query: 1175 ctggaagggctggagttttatccagagcctcactgtaaatactcttcttgtatctgctgg 1234
| ||||||||||||||||||||| |||| ||| |||||||| ||||||| || |||
Sbjct: 24069734 ccataagggctggagttttatccagtgcctgactataaatactgttcttgtgtccagtgg 24069675
Query: 1235 gagcctcctggcccaggccagccagtaaccttcctgttctcatgatgggtcagctgtaca 1294
|||||| ||||||||| |||||||||||||||||||| ||||||| ||||| | ||||
Sbjct: 24069674 gagccttttggcccagg-cagccagtaaccttcctgtttccatgatgagtcagttataca 24069616
Query: 1295 ggtgccagaaggtcagcagccagcaaggctgtgaacaggactctggtat 1343
||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 24069615 ggtgccagaaggtcagcagccagtgaggctgtgaacagcactctggtat 24069567
>Sscrofa_Chr14
|| Length = 153851969
Score = 793 bits (400), Expect = 0.0
Identities = 400/400 (100%)
Strand = Plus / Minus
Query: 944 gatgatgagaagatcctggtagagcctgcctgtggggcagccctggccgccgtctacagc 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856771 gatgatgagaagatcctggtagagcctgcctgtggggcagccctggccgccgtctacagc 40856712
Query: 1004 caggtggttcagaagctgcagggagaggggaaactctgcaccccgctgtcctccctcgtg 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856711 caggtggttcagaagctgcagggagaggggaaactctgcaccccgctgtcctccctcgtg 40856652
Query: 1064 gtcatcgtctgcgggggcagcaacatcagcctggcccagctgccagccctcaaggaacag 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856651 gtcatcgtctgcgggggcagcaacatcagcctggcccagctgccagccctcaaggaacag 40856592
Query: 1124 ctgggcatgaagagcgggcctctccattgaagacccaccacaccccctcctctggaaggg 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856591 ctgggcatgaagagcgggcctctccattgaagacccaccacaccccctcctctggaaggg 40856532
Query: 1184 ctggagttttatccagagcctcactgtaaatactcttcttgtatctgctgggagcctcct 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856531 ctggagttttatccagagcctcactgtaaatactcttcttgtatctgctgggagcctcct 40856472
Query: 1244 ggcccaggccagccagtaaccttcctgttctcatgatgggtcagctgtacaggtgccaga 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856471 ggcccaggccagccagtaaccttcctgttctcatgatgggtcagctgtacaggtgccaga 40856412
Query: 1304 aggtcagcagccagcaaggctgtgaacaggactctggtat 1343
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40856411 aggtcagcagccagcaaggctgtgaacaggactctggtat 40856372
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 591 gggaaggccacgcttccatcgtaaaggagctgaaggagacgatgagtgcaaagccggggg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859728 gggaaggccacgcttccatcgtaaaggagctgaaggagacgatgagtgcaaagccggggg 40859669
Query: 651 ccatcgtgctggcagtggggggtggaggcctattgagcggagtggcccaggggctgctgg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859668 ccatcgtgctggcagtggggggtggaggcctattgagcggagtggcccaggggctgctgg 40859609
Query: 711 aagtgggctggggagacgtgcccatcctcgccatagagaccatcggagccgacagcttca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859608 aagtgggctggggagacgtgcccatcctcgccatagagaccatcggagccgacagcttca 40859549
Query: 771 acgcttccaccaaggccggcaagctggtcaccctgccccggattaccag 819
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40859548 acgcttccaccaaggccggcaagctggtcaccctgccccggattaccag 40859500
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 5 atcaagtcgctttacctgcgctcctgttccgtctctccgtggatcgtctctccgtggatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866167 atcaagtcgctttacctgcgctcctgttccgtctctccgtggatcgtctctccgtggatc 40866108
Query: 65 gtctacccagtctctccatctagaccatctccagtccaaccctcccctgctcgcaggctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866107 gtctacccagtctctccatctagaccatctccagtccaaccctcccctgctcgcaggctc 40866048
Query: 125 tgtccagccacccaactcaccgtcttgcctcctgtgccag 164
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866047 tgtccagccacccaactcaccgtcttgcctcctgtgccag 40866008
Score = 307 bits (155), Expect = 8e-81
Identities = 158/159 (99%)
Strand = Plus / Minus
Query: 161 ccagcaatggcgtcaggacaacccctgcacgtgagaacccctattcgtgacagtatgacc 220
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40861431 ccagcgatggcgtcaggacaacccctgcacgtgagaacccctattcgtgacagtatgacc 40861372
Query: 221 ttatccaaagtggctggcaccacagtctatctcaagctagaaagttcccaaccctccggc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40861371 ttatccaaagtggctggcaccacagtctatctcaagctagaaagttcccaaccctccggc 40861312
Query: 281 tctttcaagattcggggcatcggacacctctgcaaaacg 319
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40861311 tctttcaagattcggggcatcggacacctctgcaaaacg 40861273
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 359 gcgggtaatgcaggcttggcagccgcctatgcagccaggaagctgggcatccctgccttg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860545 gcgggtaatgcaggcttggcagccgcctatgcagccaggaagctgggcatccctgccttg 40860486
Query: 419 attgtcgtgcccagcaccacacctgccctcaccatccagcggctcaagaatgagggtgcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860485 attgtcgtgcccagcaccacacctgccctcaccatccagcggctcaagaatgagggtgcc 40860426
Query: 479 atggtcaaggtggtgggtgag 499
|||||||||||||||||||||
Sbjct: 40860425 atggtcaaggtggtgggtgag 40860405
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 817 cagtgttgccaaagcgctgggcgtgaccaccgtgacagctcaggccatgaaggtgttcca 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40857751 cagtgttgccaaagcgctgggcgtgaccaccgtgacagctcaggccatgaaggtgttcca 40857692
Query: 877 ggaacagcctgttttctctgaagtggtctcagaccaggaggctgtagccgctcttgagaa 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40857691 ggaacagcctgttttctctgaagtggtctcagaccaggaggctgtagccgctcttgagaa 40857632
Query: 937 gtttgtgg 944
||||||||
Sbjct: 40857631 gtttgtgg 40857624
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 498 agaccttggacgaggccatcaagctggccaaggacctggtgaagaacaactcaaactggg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860305 agaccttggacgaggccatcaagctggccaaggacctggtgaagaacaactcaaactggg 40860246
Query: 558 tctacgtccctccctttgacgaccccctcatctgg 592
|||||||||||||||||||||||||||||||||||
Sbjct: 40860245 tctacgtccctccctttgacgaccccctcatctgg 40860211
Score = 81.8 bits (41), Expect = 9e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 319 gtgggctgagcgaggctgtgaacatttcgtctgctcctctg 359
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860807 gtgggctgagcgaggctgtgaacatttcgtctgctcctctg 40860767
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,313,614
Number of extensions: 271
Number of successful extensions: 271
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 10
Length of query: 1343
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1322
Effective length of database: 2,808,413,156
Effective search space: 3712722192232
Effective search space used: 3712722192232
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)