Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012852
(1606 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865234.1| PREDICTED: similar to kelch domain containing 3... 789 0.0
Alignment gi|XP_865298.1| PREDICTED: similar to kelch domain containing 3... 746 0.0
Alignment gi|XP_532142.2| PREDICTED: similar to kelch domain containing 3... 724 0.0
Alignment gi|XP_852194.1| PREDICTED: similar to kelch domain containing 3... 694 0.0
Alignment gi|XP_865315.1| PREDICTED: similar to kelch domain containing 3... 672 0.0
Alignment gi|XP_865249.1| PREDICTED: similar to kelch domain containing 3... 565 e-161
Alignment gi|XP_865265.1| PREDICTED: similar to testis intracellular medi... 477 e-138
Alignment gi|XP_867075.1| PREDICTED: similar to host cell factor C2 (pred... 113 5e-25
Alignment gi|XP_867065.1| PREDICTED: similar to Host cell factor 2 (HCF-2... 113 5e-25
Alignment gi|XP_532674.2| PREDICTED: similar to Host cell factor 2 (HCF-2... 113 5e-25
>ref|XP_865234.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 4
[Canis familiaris].
Length = 382
Score = 789 bits (2038), Expect = 0.0
Identities = 366/382 (95%), Positives = 369/382 (96%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGD+F FSPSLKTLCKLAVIQYNLDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDDFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI 360
Query: 1245 RWELNAMTTNSNISRPIVSSHG 1310
RWELNAMTTNSNISRPIVSSHG
Sbjct: 361 RWELNAMTTNSNISRPIVSSHG 382
>ref|XP_865298.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 7
[Canis familiaris].
Length = 371
Score = 746 bits (1927), Expect = 0.0
Identities = 345/361 (95%), Positives = 348/361 (96%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGD+F FSPSLKTLCKLAVIQYNLDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDDFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI 360
Query: 1245 R 1247
R
Sbjct: 361 R 361
>ref|XP_532142.2| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 1
[Canis familiaris].
Length = 358
Score = 724 bits (1868), Expect = 0.0
Identities = 342/382 (89%), Positives = 345/382 (90%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGKTMYIFGGYEQL GNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQL------------------------GNPARWR 156
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 157 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 216
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 217 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 276
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGD+F FSPSLKTLCKLAVIQYNLDQSCLPHDI
Sbjct: 277 DKIVLFGGTSPSPEEGLGDDFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI 336
Query: 1245 RWELNAMTTNSNISRPIVSSHG 1310
RWELNAMTTNSNISRPIVSSHG
Sbjct: 337 RWELNAMTTNSNISRPIVSSHG 358
>ref|XP_852194.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 3
[Canis familiaris].
Length = 550
Score = 694 bits (1790), Expect = 0.0
Identities = 317/321 (98%), Positives = 320/321 (99%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEF 1127
DKIVLFGGTSPSPEEGLGD+F
Sbjct: 301 DKIVLFGGTSPSPEEGLGDDF 321
>ref|XP_865315.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 8
[Canis familiaris].
Length = 311
Score = 672 bits (1734), Expect = 0.0
Identities = 307/311 (98%), Positives = 309/311 (99%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSP 1097
DKIVLFGGT P
Sbjct: 301 DKIVLFGGTRP 311
>ref|XP_865249.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 5
[Canis familiaris].
Length = 323
Score = 565 bits (1457), Expect = e-161
Identities = 265/310 (85%), Positives = 277/310 (89%), Gaps = 4/310 (1%)
Frame = +3
Query: 393 RYGHSTVLIDDTVFLWGGR---NDTEGACNV-LYAFDVNTHKWSTPRVAGTVPGARDGHS 560
R H+ V + V+ +GG D E + ++ F+ +THKWSTPRV+GTVPGARDGHS
Sbjct: 14 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNADTHKWSTPRVSGTVPGARDGHS 73
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHM 740
ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLG+HM
Sbjct: 74 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGSHM 133
Query: 741 YVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELY 920
YVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELY
Sbjct: 134 YVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELY 193
Query: 921 IFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPS 1100
IFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPS
Sbjct: 194 IFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPS 253
Query: 1101 PEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSN 1280
PEEGLGD+F FSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSN
Sbjct: 254 PEEGLGDDFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSN 313
Query: 1281 ISRPIVSSHG 1310
ISRPIVSSHG
Sbjct: 314 ISRPIVSSHG 323
>ref|XP_865265.1| PREDICTED: similar to testis intracellular mediator protein isoform 6
[Canis familiaris].
Length = 266
Score = 477 bits (1227), Expect(2) = e-138
Identities = 219/233 (93%), Positives = 221/233 (94%)
Frame = +3
Query: 612 ADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNN 791
ADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLG+HMYVFGGRADRFGPFHSNN
Sbjct: 34 ADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNN 93
Query: 792 EIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLW 971
EIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLW
Sbjct: 94 EIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLW 153
Query: 972 KFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFXXXXXXXX 1151
KFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGD+F
Sbjct: 154 KFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDDFDLIDHSDL 213
Query: 1152 XXXXFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG 1310
FSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG
Sbjct: 214 HILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG 266
Score = 35.8 bits (81), Expect(2) = e-138
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 436 FGVGGMTPKGPAMCFMLLMS 495
FG GG TPK PAMC+M LMS
Sbjct: 14 FGAGGTTPKEPAMCYMPLMS 33
Score = 62.8 bits (151), Expect = 9e-10
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%)
Frame = +3
Query: 297 DVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGA--- 467
D+H + ++ WT + T+G R HS ++ ++++GGR D G
Sbjct: 40 DIHKLDTSTMTWTLI-----CTKGNPA---RWRDFHSATMLGSHMYVFGGRADRFGPFHS 91
Query: 468 -----CNVLYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSND 632
CN + FD T W +P R HSA +YIFGGY + +D
Sbjct: 92 NNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHD 151
Query: 633 IHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGG 755
+ K + + TW I KG R ++G+ + +FGG
Sbjct: 152 LWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGG 192
>ref|XP_867075.1| PREDICTED: similar to host cell factor C2 (predicted) isoform 5
[Canis familiaris].
Length = 722
Score = 113 bits (283), Expect = 5e-25
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC----TKGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCKKDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEEGL 1115
++G+K+ +FGG P E +
Sbjct: 252 VIGNKMYIFGGWVPHKGENI 271
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_867065.1| PREDICTED: similar to Host cell factor 2 (HCF-2) (C2 factor) isoform
4 [Canis familiaris].
Length = 412
Score = 113 bits (283), Expect = 5e-25
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC----TKGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCKKDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEEGL 1115
++G+K+ +FGG P E +
Sbjct: 252 VIGNKMYIFGGWVPHKGENI 271
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_532674.2| PREDICTED: similar to Host cell factor 2 (HCF-2) (C2 factor) isoform
1 [Canis familiaris].
Length = 790
Score = 113 bits (283), Expect = 5e-25
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC----TKGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCKKDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEEGL 1115
++G+K+ +FGG P E +
Sbjct: 252 VIGNKMYIFGGWVPHKGENI 271
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,680,577
Number of extensions: 2500687
Number of successful extensions: 13899
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 13371
Number of HSP's successfully gapped: 87
Length of query: 535
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 427
Effective length of database: 15,274,216
Effective search space: 6522090232
Effective search space used: 6522090232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012852
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012852
(1606 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014966.1| kelch domain-containing protein 3 [Bos tauru... 791 0.0
Alignment gi|NP_001179877.1| host cell factor 2 [Bos taurus]. 113 4e-25
Alignment gi|XP_002687688.1| PREDICTED: host cell factor C2 [Bos taurus]. 113 4e-25
Alignment gi|XP_002707954.1| PREDICTED: Host cell factor (predicted)-like... 112 9e-25
Alignment gi|XP_590515.2| PREDICTED: Host cell factor (predicted)-like [B... 111 2e-24
Alignment gi|NP_001030476.1| rab9 effector protein with kelch motifs [Bos... 88 2e-17
Alignment gi|NP_001014948.1| kelch domain-containing protein 2 [Bos tauru... 88 2e-17
Alignment gi|NP_001179826.1| kelch domain-containing protein 1 [Bos tauru... 83 8e-16
Alignment gi|XP_002690930.1| PREDICTED: kelch domain containing 1 [Bos ta... 83 8e-16
Alignment gi|XP_002707834.1| PREDICTED: attractin-like 1-like [Bos taurus]. 79 1e-14
>ref|NP_001014966.1| kelch domain-containing protein 3 [Bos taurus].
Length = 382
Score = 791 bits (2042), Expect = 0.0
Identities = 367/382 (96%), Positives = 369/382 (96%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAARGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGDEF FSPSLKTLCKLAVIQYNLDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI 360
Query: 1245 RWELNAMTTNSNISRPIVSSHG 1310
RWELNAMTTNSNISRPIVSSHG
Sbjct: 361 RWELNAMTTNSNISRPIVSSHG 382
>ref|NP_001179877.1| host cell factor 2 [Bos taurus].
Length = 792
Score = 113 bits (283), Expect = 4e-25
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC----TKGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCKRDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEEGL 1115
++G+K+ +FGG P E +
Sbjct: 252 VIGNKMYIFGGWVPHKGENI 271
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_002687688.1| PREDICTED: host cell factor C2 [Bos taurus].
Length = 792
Score = 113 bits (283), Expect = 4e-25
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC----TKGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCKRDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEEGL 1115
++G+K+ +FGG P E +
Sbjct: 252 VIGNKMYIFGGWVPHKGENI 271
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_002707954.1| PREDICTED: Host cell factor (predicted)-like [Bos taurus].
Length = 1992
Score = 112 bits (280), Expect = 9e-25
Identities = 84/269 (31%), Positives = 125/269 (46%), Gaps = 16/269 (5%)
Frame = +3
Query: 339 LPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTP 518
L P G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P
Sbjct: 15 LQPRXKGVVGWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIP 72
Query: 519 RVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----G 686
V G +P + G + +FGG + +SND+++L S W + K G
Sbjct: 73 AVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNG 131
Query: 687 NPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCP 854
P R HS +++GN Y+FGG A+ +N Y N + + + R AW D P
Sbjct: 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIP 190
Query: 855 PT-PVLPEGRRSHSAFGYN------GELYIFGGYNA-RLNRHFHDLWKFNPVSFTWKKIE 1010
T VLP R SH+A Y +L I+GG + RL DLW + + TW K
Sbjct: 191 ITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLG----DLWTLDIETLTWNKPS 246
Query: 1011 PKGKGPCPRRRQCCCIVGDKIVLFGGTSP 1097
G P PR +G+K+ +FGG P
Sbjct: 247 LSGVAPLPRSLHSATTIGNKMYVFGGWVP 275
Score = 80.1 bits (196), Expect = 5e-15
Identities = 81/281 (28%), Positives = 108/281 (38%), Gaps = 31/281 (11%)
Frame = +3
Query: 222 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 401
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 402 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 545
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 546 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 707
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 708 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 863
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 864 VLPEGRRSHSAFGYNGELYIFG---GYNARLNRHF--HDLW 971
+P R H A N LYI+ GY N DLW
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLW 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +3
Query: 684 GNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTP 863
G R R H A + + VFGG NE + + V++T T W
Sbjct: 27 GPVPRPRHGHRAVAIKELIVVFGG----------GNEGIVDELHVYNTATNQWFIPAVRG 76
Query: 864 VLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPK----GKGPC 1031
+P G ++ L +FGG ++ +DL++ + WK+++ K G PC
Sbjct: 77 DIPPGCAAYGFVCDGTRLLVFGGM-VEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135
Query: 1032 PRRRQCCCIVGDKIVLFGGTSPSPEE 1109
PR +VG+K LFGG + E+
Sbjct: 136 PRLGHSFSLVGNKCYLFGGLANDSED 161
>ref|XP_590515.2| PREDICTED: Host cell factor (predicted)-like [Bos taurus].
Length = 1992
Score = 111 bits (278), Expect = 2e-24
Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 16/260 (6%)
Frame = +3
Query: 366 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 545
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 546 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 713
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 714 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 878
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 879 RRSHSAFGYN------GELYIFGGYNA-RLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR 1037
R SH+A Y +L I+GG + RL DLW + + TW K G P PR
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGGMSGCRLG----DLWTLDIETLTWNKPSLSGVAPLPR 255
Query: 1038 RRQCCCIVGDKIVLFGGTSP 1097
+G+K+ +FGG P
Sbjct: 256 SLHSATTIGNKMYVFGGWVP 275
Score = 80.1 bits (196), Expect = 5e-15
Identities = 81/281 (28%), Positives = 108/281 (38%), Gaps = 31/281 (11%)
Frame = +3
Query: 222 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 401
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 402 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 545
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 546 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 707
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 708 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 863
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 864 VLPEGRRSHSAFGYNGELYIFG---GYNARLNRHF--HDLW 971
+P R H A N LYI+ GY N DLW
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLW 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +3
Query: 684 GNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTP 863
G R R H A + + VFGG NE + + V++T T W
Sbjct: 27 GPVPRPRHGHRAVAIKELIVVFGG----------GNEGIVDELHVYNTATNQWFIPAVRG 76
Query: 864 VLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPK----GKGPC 1031
+P G ++ L +FGG ++ +DL++ + WK+++ K G PC
Sbjct: 77 DIPPGCAAYGFVCDGTRLLVFGGM-VEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135
Query: 1032 PRRRQCCCIVGDKIVLFGGTSPSPEE 1109
PR +VG+K LFGG + E+
Sbjct: 136 PRLGHSFSLVGNKCYLFGGLANDSED 161
>ref|NP_001030476.1| rab9 effector protein with kelch motifs [Bos taurus].
Length = 372
Score = 88.2 bits (217), Expect = 2e-17
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 6/229 (2%)
Frame = +3
Query: 393 RYGHSTVLIDDT---VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH-S 560
RY H++ + T ++++GG D G N L + +T W+TP V G P R H S
Sbjct: 86 RYEHTSFIPSCTPHSIWVFGGA-DQSGNRNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTS 144
Query: 561 ACVLGKTMYIFGGYEQLADCFSN-DIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNH 737
+ +G +Y+FGG E+ A + +H D +T+TW+ T G P R H G
Sbjct: 145 SAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTK 204
Query: 738 MYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGE 914
+++ GG A D F ++++C D W PT P G +HSA
Sbjct: 205 LFIHGGLAGDNF-----YDDLHC-----IDISDMKWQKLRPTGAAPTGCAAHSAVAVGKH 254
Query: 915 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIV 1061
LY+FGG + +++++ W ++ + P R CI+
Sbjct: 255 LYVFGGMTP--TGALNTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCII 301
Score = 82.4 bits (202), Expect = 1e-15
Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 11/250 (4%)
Frame = +3
Query: 384 PYMRYGHSTVLIDDT-------VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPG 542
P R GHS + VF+ GG + +V + D+ TH+W G +P
Sbjct: 28 PCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDV-HTIDLGTHQWDLATSEGLLP- 85
Query: 543 ARDGHSACVLGKT---MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFH 713
R H++ + T +++FGG +Q + N + L+ T TWT G P R FH
Sbjct: 86 -RYEHTSFIPSCTPHSIWVFGGADQSGN--RNCLQVLNPDTRTWTTPEVTGPPPSPRTFH 142
Query: 714 -SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSH 890
S+ +G+ +YVFGG P ++ VFD T W P R H
Sbjct: 143 TSSAAIGDQLYVFGGGERGAQPVQDV------QLHVFDANTLTWSQPETHGKPPSPRHGH 196
Query: 891 SAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDK 1070
+L+I GG + + DL + W+K+ P G P VG
Sbjct: 197 VMVAAGTKLFIHGGLAG--DNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKH 254
Query: 1071 IVLFGGTSPS 1100
+ +FGG +P+
Sbjct: 255 LYVFGGMTPT 264
Score = 77.4 bits (189), Expect = 3e-14
Identities = 67/228 (29%), Positives = 92/228 (40%), Gaps = 8/228 (3%)
Frame = +3
Query: 234 HRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKL----PPVRPATRGQAPVVPYMRYG 401
H ++ FGG + L+ + N + WT PP P T +
Sbjct: 99 HSIWVFGGADQSGNRNCLQ-----VLNPDTRTWTTPEVTGPPPSPRT-----------FH 142
Query: 402 HSTVLIDDTVFLWGGRNDTEGACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACV 569
S+ I D ++++GG GA V L+ FD NT WS P G P R GH
Sbjct: 143 TSSAAIGDQLYVFGGGE--RGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVA 200
Query: 570 LGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVF 749
G ++I GG D F +D+H +D S M W + G HSA +G H+YVF
Sbjct: 201 AGTKLFIHGGLA--GDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVF 258
Query: 750 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 893
GG P + N +Y I + + PPT GR HS
Sbjct: 259 GGMT----PTGALNTMYQYHIEKQHWTLLKFENSPPT-----GRLDHS 297
Score = 75.9 bits (185), Expect = 1e-13
Identities = 49/177 (27%), Positives = 85/177 (48%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 377
PR + ++ A+G ++Y FGG G + ++ + +H+F+A +L W+ +P T G+
Sbjct: 138 PRTFHTSSAAIGDQLYVFGGGERGA--QPVQDVQLHVFDANTLTWS-----QPETHGKP- 189
Query: 378 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
P R+GH V +F+ GG + + L+ D++ KW R G P H
Sbjct: 190 --PSPRHGHVMVAAGTKLFIHGGLAG-DNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAH 246
Query: 558 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATML 728
SA +GK +Y+FGG N +++ WTL+ + +P R HS ++
Sbjct: 247 SAVAVGKHLYVFGGMTPTGAL--NTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCII 301
Score = 62.4 bits (150), Expect = 1e-09
Identities = 61/206 (29%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Frame = +3
Query: 507 WSTPRVAGTVPGARDGHSACVL--------GKTMYIFGGYEQLADCFSNDIHKLDTSTMT 662
W T + G P AR GHS L GK ++I GG + +D+H +D T
Sbjct: 18 WYTLTLVGDSPCARVGHSCSYLPPVGDAERGK-VFIVGGADPNRSF--SDVHTIDLGTHQ 74
Query: 663 WTLICTKGNPARWRDFHSATMLGNH-MYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
W L ++G R+ H ++VFGG AD+ G N ++V + T
Sbjct: 75 WDLATSEGLLPRYEHTSFIPSCTPHSIWVFGG-ADQSGNR--------NCLQVLNPDTRT 125
Query: 840 WLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGYNARLNRHFHD--LWKFNPVSFTWKKIE 1010
W T P R H++ G+ LY+FGG R + D L F+ + TW + E
Sbjct: 126 WTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGG-GERGAQPVQDVQLHVFDANTLTWSQPE 184
Query: 1011 PKGKGPCPRRRQCCCIVGDKIVLFGG 1088
GK P PR G K+ + GG
Sbjct: 185 THGKPPSPRHGHVMVAAGTKLFIHGG 210
>ref|NP_001014948.1| kelch domain-containing protein 2 [Bos taurus].
Length = 406
Score = 88.2 bits (217), Expect = 2e-17
Identities = 83/327 (25%), Positives = 131/327 (40%), Gaps = 32/327 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGE-----DYETLRQIDVHIFNAVSLRWTKLPPVRPATRG 368
R H AV+ G ++ +GGY S + D+ R+ ++ I+N + RW K+ T G
Sbjct: 32 RSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPRE-ELWIYNMETGRWKKIN-----TEG 85
Query: 369 QAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHK----WSTPRVAGTV 536
P P M G V +D ++L+GG + + G N Y D + W G
Sbjct: 86 DVP--PSMS-GSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLHWERIDCQGVP 141
Query: 537 PGARDGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTS 653
P ++D V + FGGY L + +++ +H LDT
Sbjct: 142 PSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTE 201
Query: 654 TMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRT 833
T W+ T G P R H+ +GN +VFGGR + N + + T
Sbjct: 202 TFIWSQPITTGKPPSPRAAHACATVGNKGFVFGGR---------YRDARMNDLHYLNLDT 252
Query: 834 EAWLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGYNARLNRHFHDLWKFNPVSFTWKKI- 1007
W + P + P GR HS + + L++FGG+ + D W + W K
Sbjct: 253 WEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGGFTTD-KQPLSDAWTYCISKNEWIKFN 311
Query: 1008 EPKGKGPCPRRRQCCCIVGDKIVLFGG 1088
P + P C G+ +++FGG
Sbjct: 312 HPHTEKPRLWHTACASDEGE-VIVFGG 337
Score = 73.9 bits (180), Expect = 4e-13
Identities = 71/285 (24%), Positives = 115/285 (40%), Gaps = 30/285 (10%)
Frame = +3
Query: 324 LRWTKLP-PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG--RNDTEGACNV------ 476
LR +LP P P R GH V +F+WGG N G +
Sbjct: 8 LREDELPGPAYEGYESAELACPAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREE 67
Query: 477 LYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST 656
L+ +++ T +W G VP + G A + + +Y+FGG+ + +N + LD+ +
Sbjct: 68 LWIYNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRS 125
Query: 657 ----MTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN- 806
+ W I +G P +D + N + FGG D+ G F + + N
Sbjct: 126 TDRVLHWERIDCQGVPPSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNS 185
Query: 807 --------RIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLNRH 956
+ + DT T W T P R +H+ + ++FGG +AR+N
Sbjct: 186 SHPRGWNDHVHILDTETFIWSQPITTGKPPSPRAAHACATVGNKGFVFGGRYRDARMN-- 243
Query: 957 FHDLWKFNPVSFTWKKIEPKGKGPCPRR-RQCCCIVGDKIVLFGG 1088
DL N ++ W ++ P+G P R + D + LFGG
Sbjct: 244 --DLHYLNLDTWEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGG 286
>ref|NP_001179826.1| kelch domain-containing protein 1 [Bos taurus].
Length = 406
Score = 82.8 bits (203), Expect = 8e-16
Identities = 92/328 (28%), Positives = 138/328 (42%), Gaps = 32/328 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R H AV G+ +Y +GGY S ED E L ++ ++ S WT G+
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWT-----MHLMEGE--- 64
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 545
+P G I+ ++++GG +D +G N LY ++ T+ W G P
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDD-KGYSNRLYFVNLRTRDGTYVWEKITNFEGQPPTP 123
Query: 546 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 665
RD S V + FGGY +L DCF ND+H DT T +W
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGCRRHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTHSW 183
Query: 666 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW 842
KG P + R H+ +LGN Y+FGGR + N + + T W
Sbjct: 184 LQPEIKGGIPPQPRAAHTCAVLGNKGYIFGGRV---------LQTRMNDLHYLNLDTWTW 234
Query: 843 LD-CPPTPVLPEGRRSHSAFGY-NGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIE-- 1010
P P+ R H+ + L++FGG +A N D W N ++ WK++
Sbjct: 235 SGRIPINGENPKHRSWHTLTPIADDTLFLFGGLSAD-NIPLSDGWIHNVITNCWKQLTHL 293
Query: 1011 PKGKGPCPRRRQCCCI-VGDKIVLFGGT 1091
PK K PR C+ ++I++FGG+
Sbjct: 294 PKTK---PRLWHTACLGKENEIMVFGGS 318
Score = 77.0 bits (188), Expect = 4e-14
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 32/266 (12%)
Frame = +3
Query: 393 RYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
R GH V+ + +++WGG N+ + ++ +D+++ W+ + G +P + G
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWTMHLMEGELPTSMSGS 72
Query: 558 -SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSA 719
AC+ GK +Y+FGGY+ +SN ++ ++ T T + K G P RD S
Sbjct: 73 CGACINGK-LYVFGGYDDKG--YSNRLYFVNLRTRDGTYVWEKITNFEGQPPTPRDKLSC 129
Query: 720 TMLGNHMYVFGGRADRFGPFHSNNEI------------------YCNRIRVFDTRTEAWL 845
+ + + FGG R +NE+ + N + +FDT+T +WL
Sbjct: 130 WVYKDRLIYFGGYGCR-----RHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTHSWL 184
Query: 846 DCP-PTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWK-KIEPKG 1019
+ P+ R +H+ + YIFGG L +DL N ++TW +I G
Sbjct: 185 QPEIKGGIPPQPRAAHTCAVLGNKGYIFGG--RVLQTRMNDLHYLNLDTWTWSGRIPING 242
Query: 1020 KGPCPRR-RQCCCIVGDKIVLFGGTS 1094
+ P R I D + LFGG S
Sbjct: 243 ENPKHRSWHTLTPIADDTLFLFGGLS 268
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +3
Query: 693 ARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYC--NRIRVFDTRTEAWLDCPPTPV 866
A R H A + GN +YV+GG +NE+Y + I +D + W
Sbjct: 10 AEERSGHCAVVDGNFLYVWGGYVS-----IEDNEVYLPNDEIWTYDIDSGLWTMHLMEGE 64
Query: 867 LPEGRRSHSAFGYNGELYIFGGYNAR--LNRHFHDLWKFNPVSFTWKKIEP-KGKGPCPR 1037
LP NG+LY+FGGY+ + NR + + ++ W+KI +G+ P PR
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDDKGYSNRLYFVNLRTRDGTYVWEKITNFEGQPPTPR 124
Query: 1038 RRQCCCIVGDKIVLFGG 1088
+ C + D+++ FGG
Sbjct: 125 DKLSCWVYKDRLIYFGG 141
>ref|XP_002690930.1| PREDICTED: kelch domain containing 1 [Bos taurus].
Length = 406
Score = 82.8 bits (203), Expect = 8e-16
Identities = 92/328 (28%), Positives = 138/328 (42%), Gaps = 32/328 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R H AV G+ +Y +GGY S ED E L ++ ++ S WT G+
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWT-----MHLMEGE--- 64
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 545
+P G I+ ++++GG +D +G N LY ++ T+ W G P
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDD-KGYSNRLYFVNLRTRDGTYVWEKITNFEGQPPTP 123
Query: 546 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 665
RD S V + FGGY +L DCF ND+H DT T +W
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGCRRHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTHSW 183
Query: 666 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW 842
KG P + R H+ +LGN Y+FGGR + N + + T W
Sbjct: 184 LQPEIKGGIPPQPRAAHTCAVLGNKGYIFGGRV---------LQTRMNDLHYLNLDTWTW 234
Query: 843 LD-CPPTPVLPEGRRSHSAFGY-NGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIE-- 1010
P P+ R H+ + L++FGG +A N D W N ++ WK++
Sbjct: 235 SGRIPINGENPKHRSWHTLTPIADDTLFLFGGLSAD-NIPLSDGWIHNVITNCWKQLTHL 293
Query: 1011 PKGKGPCPRRRQCCCI-VGDKIVLFGGT 1091
PK K PR C+ ++I++FGG+
Sbjct: 294 PKTK---PRLWHTACLGKENEIMVFGGS 318
Score = 77.0 bits (188), Expect = 4e-14
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 32/266 (12%)
Frame = +3
Query: 393 RYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
R GH V+ + +++WGG N+ + ++ +D+++ W+ + G +P + G
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWTMHLMEGELPTSMSGS 72
Query: 558 -SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSA 719
AC+ GK +Y+FGGY+ +SN ++ ++ T T + K G P RD S
Sbjct: 73 CGACINGK-LYVFGGYDDKG--YSNRLYFVNLRTRDGTYVWEKITNFEGQPPTPRDKLSC 129
Query: 720 TMLGNHMYVFGGRADRFGPFHSNNEI------------------YCNRIRVFDTRTEAWL 845
+ + + FGG R +NE+ + N + +FDT+T +WL
Sbjct: 130 WVYKDRLIYFGGYGCR-----RHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTHSWL 184
Query: 846 DCP-PTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWK-KIEPKG 1019
+ P+ R +H+ + YIFGG L +DL N ++TW +I G
Sbjct: 185 QPEIKGGIPPQPRAAHTCAVLGNKGYIFGG--RVLQTRMNDLHYLNLDTWTWSGRIPING 242
Query: 1020 KGPCPRR-RQCCCIVGDKIVLFGGTS 1094
+ P R I D + LFGG S
Sbjct: 243 ENPKHRSWHTLTPIADDTLFLFGGLS 268
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +3
Query: 693 ARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYC--NRIRVFDTRTEAWLDCPPTPV 866
A R H A + GN +YV+GG +NE+Y + I +D + W
Sbjct: 10 AEERSGHCAVVDGNFLYVWGGYVS-----IEDNEVYLPNDEIWTYDIDSGLWTMHLMEGE 64
Query: 867 LPEGRRSHSAFGYNGELYIFGGYNAR--LNRHFHDLWKFNPVSFTWKKIEP-KGKGPCPR 1037
LP NG+LY+FGGY+ + NR + + ++ W+KI +G+ P PR
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDDKGYSNRLYFVNLRTRDGTYVWEKITNFEGQPPTPR 124
Query: 1038 RRQCCCIVGDKIVLFGG 1088
+ C + D+++ FGG
Sbjct: 125 DKLSCWVYKDRLIYFGG 141
>ref|XP_002707834.1| PREDICTED: attractin-like 1-like [Bos taurus].
Length = 1438
Score = 78.6 bits (192), Expect = 1e-14
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 13/276 (4%)
Frame = +3
Query: 195 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 368
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 408 GPLQRYGHSLALYQENIFMYGGRIETSDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 463
Query: 369 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 464 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 519
Query: 534 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 698
+ GH++ + K++Y+ GGY+ L +D++K + + TWT++ G
Sbjct: 520 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNPKTWTILKESGFA-- 577
Query: 699 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 875
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 578 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 636
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNP 983
R HSA NG +YIFGG+++ L +D+ + P
Sbjct: 637 NRFGHSAVVINGSMYIFGGFSSVL---LNDILVYKP 669
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,754,284
Number of extensions: 2448486
Number of successful extensions: 13226
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 12784
Number of HSP's successfully gapped: 86
Length of query: 535
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,140,958
Effective search space: 6052330024
Effective search space used: 6052330024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012852
(1606 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098784.1| kelch domain-containing protein 3 [Sus scrof... 754 0.0
Alignment gi|XP_003126692.1| PREDICTED: host cell factor 2 [Sus scrofa]. 113 3e-25
Alignment gi|XP_003135533.1| PREDICTED: host cell factor 1 [Sus scrofa]. 111 1e-24
Alignment gi|XP_003360845.1| PREDICTED: kelch domain-containing protein 1... 85 1e-16
Alignment gi|XP_003121855.1| PREDICTED: kelch domain-containing protein 1... 84 3e-16
Alignment gi|XP_001929462.3| PREDICTED: attractin-like protein 1 [Sus scr... 81 2e-15
Alignment gi|XP_003133045.1| PREDICTED: leucine-zipper-like transcription... 77 4e-14
Alignment gi|XP_001927324.3| PREDICTED: attractin, partial [Sus scrofa]. 67 2e-11
Alignment gi|XP_001925243.3| PREDICTED: kelch domain-containing protein 2... 67 2e-11
Alignment gi|XP_003127683.1| PREDICTED: f-box only protein 42-like [Sus s... 64 2e-10
>ref|NP_001098784.1| kelch domain-containing protein 3 [Sus scrofa].
Length = 410
Score = 754 bits (1946), Expect = 0.0
Identities = 349/362 (96%), Positives = 350/362 (96%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGDEF FSPSLKTLCKLAVIQYNLDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI 360
Query: 1245 RW 1250
R+
Sbjct: 361 RY 362
>ref|XP_003126692.1| PREDICTED: host cell factor 2 [Sus scrofa].
Length = 792
Score = 113 bits (283), Expect = 3e-25
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC----TKGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWRKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCRRDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEEGL 1115
++G+K+ +FGG P E +
Sbjct: 252 VIGNKMYIFGGWVPHKGENI 271
Score = 65.5 bits (158), Expect = 8e-11
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCRRDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIEASPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_003135533.1| PREDICTED: host cell factor 1 [Sus scrofa].
Length = 2029
Score = 111 bits (278), Expect = 1e-24
Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 16/260 (6%)
Frame = +3
Query: 366 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 545
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 546 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 713
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 714 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 878
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 879 RRSHSAFGYN------GELYIFGGYNA-RLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR 1037
R SH+A Y +L I+GG + RL DLW + + TW K G P PR
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGGMSGCRLG----DLWTLDIETLTWNKPSLSGVAPLPR 255
Query: 1038 RRQCCCIVGDKIVLFGGTSP 1097
+G+K+ +FGG P
Sbjct: 256 SLHSATTIGNKMYVFGGWVP 275
Score = 80.9 bits (198), Expect = 2e-15
Identities = 82/282 (29%), Positives = 109/282 (38%), Gaps = 32/282 (11%)
Frame = +3
Query: 222 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 401
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 402 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 545
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 546 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 707
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 708 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW----LDCPPT 860
HSAT +GN MYVFGG D H N + + T AW +D
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 861 PVLPEGRRSHSAFGYNGELYIFG---GYNARLNRHF--HDLW 971
V P R H A N LYI+ GY N DLW
Sbjct: 317 NV-PRARAGHCAVAINSRLYIWSGRDGYRKAWNNQVCCKDLW 357
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +3
Query: 684 GNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTP 863
G R R H A + + VFGG NE + + V++T T W
Sbjct: 27 GPVPRPRHGHRAVAIKELIVVFGG----------GNEGIVDELHVYNTATNQWFIPAVRG 76
Query: 864 VLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPK----GKGPC 1031
+P G ++ L +FGG ++ +DL++ + WK+++ K G PC
Sbjct: 77 DIPPGCAAYGFVCDGTRLLVFGGM-VEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135
Query: 1032 PRRRQCCCIVGDKIVLFGGTSPSPEE 1109
PR +VG+K LFGG + E+
Sbjct: 136 PRLGHSFSLVGNKCYLFGGLANDSED 161
>ref|XP_003360845.1| PREDICTED: kelch domain-containing protein 10-like, partial [Sus
scrofa].
Length = 386
Score = 85.1 bits (209), Expect = 1e-16
Identities = 75/291 (25%), Positives = 114/291 (39%), Gaps = 21/291 (7%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYC---------SGEDYETLRQI-DVHIFNAVSLRWTKLPP 347
P R H VA +Y FGGY EDY R++ H V W ++
Sbjct: 34 PARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGV---WHQM-- 88
Query: 348 VRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNV--LYAFDVNTHKWSTPR 521
G +P S VL + + ++GG G N ++ +V +W+
Sbjct: 89 ------GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS 142
Query: 522 VAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPA-- 695
G P G + ++ ++Y+FGG +S D+HKLD +T WT +
Sbjct: 143 CRGKKPSRIYGQAMAIINGSLYVFGG--TTGYIYSTDLHKLDLNTREWTQLKPNNLSCDL 200
Query: 696 ---RWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPV 866
R+R H G +Y+ GG S N+I ++ T AW + P
Sbjct: 201 PEERYR--HEIAHDGQRIYILGGGT-------SWTAYSLNKIHAYNLETNAWEEIATKPH 251
Query: 867 ----LPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKI 1007
P RR HS +++I GGYN + D+WK N +F W K+
Sbjct: 252 DKIGFPAARRCHSCVQIKNDVFICGGYNGEVI--LGDIWKLNLQTFQWVKL 300
Score = 67.8 bits (164), Expect = 2e-11
Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 10/258 (3%)
Frame = +3
Query: 231 GHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHST 410
G+ + FGG +G + DVH+ N RW L + RG+ P YG +
Sbjct: 107 GNNLLVFGG--TGIPFGESNGNDVHVCNVKYKRWALL-----SCRGKKPS---RIYGQAM 156
Query: 411 VLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPR---VAGTVPGARDGHSACVLGKT 581
+I+ +++++GG + + L+ D+NT +W+ + ++ +P R H G+
Sbjct: 157 AIINGSLYVFGGTTGYIYSTD-LHKLDLNTREWTQLKPNNLSCDLPEERYRHEIAHDGQR 215
Query: 582 MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSATMLGNHMYV 746
+YI GG N IH + T W I TK G PA R HS + N +++
Sbjct: 216 IYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHDKIGFPAA-RRCHSCVQIKNDVFI 274
Query: 747 FGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSH-SAFGYNGELYI 923
GG N E+ I + +T W+ P T +PE H +A G +YI
Sbjct: 275 CGG---------YNGEVILGDIWKLNLQTFQWVKLPAT--MPEPVYFHCAAVTPAGCMYI 323
Query: 924 FGG-YNARLNRHFHDLWK 974
GG N N+ L+K
Sbjct: 324 HGGVVNIHENKRTGSLFK 341
Score = 64.3 bits (155), Expect = 2e-10
Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 19/261 (7%)
Frame = +3
Query: 363 RGQAPVVPYMRYGHSTVLIDDTVFLWGGRN----DTEGACNV-------LYAFDVNTHKW 509
RG P P R GH V + ++++GG N ++ G N L+ + T W
Sbjct: 28 RGHRP--PPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVW 85
Query: 510 STPRVAGTVPGARDGHSACVLGKTMYIFGGYE-QLADCFSNDIHKLDTSTMTWTLICTKG 686
G +P S + G + +FGG + ND+H + W L+ +G
Sbjct: 86 HQMGTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLSCRG 145
Query: 687 NPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPV 866
+ ++ +YVFGG + IY + D T W P +
Sbjct: 146 KKPSRIYGQAMAIINGSLYVFGG---------TTGYIYSTDLHKLDLNTREWTQLKPNNL 196
Query: 867 ---LPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKI--EPKGKGPC 1031
LPE R H +YI GG + + + +N + W++I +P K
Sbjct: 197 SCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHDKIGF 256
Query: 1032 PRRRQC--CCIVGDKIVLFGG 1088
P R+C C + + + + GG
Sbjct: 257 PAARRCHSCVQIKNDVFICGG 277
>ref|XP_003121855.1| PREDICTED: kelch domain-containing protein 1 [Sus scrofa].
Length = 406
Score = 83.6 bits (205), Expect = 3e-16
Identities = 92/328 (28%), Positives = 138/328 (42%), Gaps = 32/328 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R H AV G+ +Y +GGY S ED E L ++ ++ S WT G+
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWT-----MHLMEGE--- 64
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 545
+P G I+ ++++GG +D +G N LY ++ T+ W G P
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDD-KGYSNRLYFVNLRTRDGTYIWEKITNFEGQPPTP 123
Query: 546 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 665
RD S V + FGGY +L DCF ND+H DT T +W
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGCRRHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTQSW 183
Query: 666 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW 842
KG P + R H+ +LGN Y+FGGR + N + + T W
Sbjct: 184 LQPEIKGGVPPQPRAAHTCAVLGNKGYIFGGRV---------LQTRMNDLHYLNLDTWTW 234
Query: 843 LD-CPPTPVLPEGRRSHSAFGY-NGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIE-- 1010
P P+ R H+ + L++FGG +A N D W N ++ WK++
Sbjct: 235 SGRIPVNGENPKHRSWHTLTPIADDTLFLFGGLSAD-NVPLSDGWIHNVITNCWKQLTHL 293
Query: 1011 PKGKGPCPRRRQCCCI-VGDKIVLFGGT 1091
PK K PR C+ ++I++FGG+
Sbjct: 294 PKTK---PRLWHTACLGKENEIMVFGGS 318
Score = 79.0 bits (193), Expect = 7e-15
Identities = 72/266 (27%), Positives = 119/266 (44%), Gaps = 32/266 (12%)
Frame = +3
Query: 393 RYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
R GH V+ + +++WGG N+ + ++ +D+++ W+ + G +P + G
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWTMHLMEGELPTSMSGS 72
Query: 558 -SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSA 719
AC+ GK +Y+FGGY+ +SN ++ ++ T T I K G P RD S
Sbjct: 73 CGACINGK-LYVFGGYDDKG--YSNRLYFVNLRTRDGTYIWEKITNFEGQPPTPRDKLSC 129
Query: 720 TMLGNHMYVFGGRADRFGPFHSNNEI------------------YCNRIRVFDTRTEAWL 845
+ + + FGG R +NE+ + N + +FDT+T++WL
Sbjct: 130 WVYKDRLIYFGGYGCR-----RHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTQSWL 184
Query: 846 DCP-PTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWK-KIEPKG 1019
V P+ R +H+ + YIFGG L +DL N ++TW +I G
Sbjct: 185 QPEIKGGVPPQPRAAHTCAVLGNKGYIFGG--RVLQTRMNDLHYLNLDTWTWSGRIPVNG 242
Query: 1020 KGPCPRR-RQCCCIVGDKIVLFGGTS 1094
+ P R I D + LFGG S
Sbjct: 243 ENPKHRSWHTLTPIADDTLFLFGGLS 268
Score = 57.8 bits (138), Expect = 2e-08
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +3
Query: 693 ARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYC--NRIRVFDTRTEAWLDCPPTPV 866
A R H A + GN +YV+GG +NE+Y + I +D + W
Sbjct: 10 AEERSGHCAVVDGNFLYVWGGYVS-----IEDNEVYLPNDEIWTYDIDSGLWTMHLMEGE 64
Query: 867 LPEGRRSHSAFGYNGELYIFGGYNAR--LNRHFHDLWKFNPVSFTWKKIEP-KGKGPCPR 1037
LP NG+LY+FGGY+ + NR + + ++ W+KI +G+ P PR
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDDKGYSNRLYFVNLRTRDGTYIWEKITNFEGQPPTPR 124
Query: 1038 RRQCCCIVGDKIVLFGG 1088
+ C + D+++ FGG
Sbjct: 125 DKLSCWVYKDRLIYFGG 141
>ref|XP_001929462.3| PREDICTED: attractin-like protein 1 [Sus scrofa].
Length = 838
Score = 80.9 bits (198), Expect = 2e-15
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 13/276 (4%)
Frame = +3
Query: 195 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 368
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 352 GPLQRYGHSLALYQENIFMYGGRIETSDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 407
Query: 369 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 408 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 463
Query: 534 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 698
+ GH++ + K++Y+ GGY+ L +D++K + +T TWT++ G
Sbjct: 464 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNTKTWTILKESGFA-- 521
Query: 699 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 875
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 522 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 580
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNP 983
R HSA NG +YIFGG+++ L +D+ + P
Sbjct: 581 NRFGHSAVVINGSMYIFGGFSSVL---LNDILVYKP 613
>ref|XP_003133045.1| PREDICTED: leucine-zipper-like transcriptional regulator 1-like [Sus
scrofa].
Length = 840
Score = 76.6 bits (187), Expect = 4e-14
Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 13/269 (4%)
Frame = +3
Query: 327 RWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHK 506
RW +LPP V R H+ V D ++++GG N + N L FDV
Sbjct: 53 RWRRLPPCDE-------FVGARRSKHTVVAYKDAIYVFGGDNG-KTMLNDLLRFDVKDCS 104
Query: 507 WSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS-------NDIHKLDTSTMTW 665
W GT P R HSA V G +M++FGGY D +S ND+ + +T W
Sbjct: 105 WCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGY--TGDIYSNSNLKNKNDLFEYKFATGQW 162
Query: 666 TLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWL 845
T +G R H AT+ + +++F G + N+++ I + D W
Sbjct: 163 TEWKIEGRLPVARSAHGATVYSDKLWIFAG----YDGNARLNDMW--TIGLQDRELTCWE 216
Query: 846 DCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEP---- 1013
+ + +P + A +++F G + + ++L++F TW +I
Sbjct: 217 EVAQSGEIPPSCCNFPAAVCRDRMFVFSGQSGA--KITNNLFQFEFKDKTWTRIPTEHLL 274
Query: 1014 KGKGPCPRRRQCCCIVG--DKIVLFGGTS 1094
+G P P+RR +V + +FGG +
Sbjct: 275 RGSPPPPQRRYGHTMVAFDRHLYVFGGAA 303
Score = 67.4 bits (163), Expect = 2e-11
Identities = 82/364 (22%), Positives = 133/364 (36%), Gaps = 65/364 (17%)
Frame = +3
Query: 195 GPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQA 374
G RR H VA +Y FGG ++ +T+ D+ F+ W R T G
Sbjct: 65 GARRSKHTVVAYKDAIYVFGG----DNGKTMLN-DLLRFDVKDCSWC-----RAFTTGTP 114
Query: 375 PVVPYMRYGHSTVLIDDTVFLWGG------RNDTEGACNVLYAFDVNTHKWSTPRVAGTV 536
P RY HS V+ ++F++GG N N L+ + T +W+ ++ G +
Sbjct: 115 PAP---RYHHSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRL 171
Query: 537 PGARDGHSACVLGKTMYIFGGYE------------------------------------- 605
P AR H A V ++IF GY+
Sbjct: 172 PVARSAHGATVYSDKLWIFAGYDGNARLNDMWTIGLQDRELTCWEEVAQSGEIPPSCCNF 231
Query: 606 --------------QLADCFSNDIHKLDTSTMTWTLICT----KGNPA--RWRDFHSATM 725
Q +N++ + + TWT I T +G+P + R H+
Sbjct: 232 PAAVCRDRMFVFSGQSGAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVA 291
Query: 726 LGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-LDCPPTPVLPEGRRSHSAFG 902
H+YVFGG AD P NE++C +D + W + P + G +
Sbjct: 292 FDRHLYVFGGAADNTLP----NELHC-----YDVDFQTWEVIQPSSDSEVGGAETPERAS 342
Query: 903 YNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKK-IEPKGKGPCPRRRQCCCIVGDKIVL 1079
+ E G + D++ + S T ++ P + P R ++ D + +
Sbjct: 343 ASEEAPALGSEERGACKKSRDVFGLDFGSTTARQPTLPASELPSGRLFHAAAVISDAMYI 402
Query: 1080 FGGT 1091
FGGT
Sbjct: 403 FGGT 406
Score = 55.8 bits (133), Expect = 6e-08
Identities = 54/192 (28%), Positives = 75/192 (39%), Gaps = 3/192 (1%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 377
P N A R++ F G + L Q F WT++P RG P
Sbjct: 226 PSCCNFPAAVCRDRMFVFSGQSGAKITNNLFQ-----FEFKDKTWTRIP-TEHLLRGSPP 279
Query: 378 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWST--PRVAGTVPGARD 551
P RYGH+ V D ++++GG D N L+ +DV+ W P V GA
Sbjct: 280 P-PQRRYGHTMVAFDRHLYVFGGAADNT-LPNELHCYDVDFQTWEVIQPSSDSEVGGAET 337
Query: 552 GHSACVLGKTMYIFGGYEQLADCFSNDIHKLD-TSTMTWTLICTKGNPARWRDFHSATML 728
A + G E+ A S D+ LD ST R FH+A ++
Sbjct: 338 PERASA-SEEAPALGSEERGACKKSRDVFGLDFGSTTARQPTLPASELPSGRLFHAAAVI 396
Query: 729 GNHMYVFGGRAD 764
+ MY+FGG D
Sbjct: 397 SDAMYIFGGTVD 408
>ref|XP_001927324.3| PREDICTED: attractin, partial [Sus scrofa].
Length = 1158
Score = 67.4 bits (163), Expect = 2e-11
Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 13/260 (5%)
Frame = +3
Query: 207 VNHAAVAVGH-------RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATR 365
VN V GH ++Y +GG T HI N + T + A
Sbjct: 373 VNSVVVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKEQYAVV 432
Query: 366 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 545
G + + + G +L+ +F G G + + +D++ + WS G +
Sbjct: 433 GHSAHIVTLTSGRVVMLV---IF---GHCPLYGYISNVQEYDLDKNTWSILHTQGALVQG 486
Query: 546 RDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPARWRDF 710
GHS+ + + +Y+ GGY+ + ++D+++ + T WT++ + +R
Sbjct: 487 GYGHSSVFDHITRALYVHGGYKAFSANKYRLADDLYRYNVDTQMWTIL---KDSRFFRYL 543
Query: 711 HSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR-S 887
H+A ++ M VFGG + + + +D + W P + + R
Sbjct: 544 HTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRWSVLPRPDLHHDVNRFG 603
Query: 888 HSAFGYNGELYIFGGYNARL 947
HSA +N +Y+FGG+N+ L
Sbjct: 604 HSAVLHNSTMYVFGGFNSLL 623
Score = 63.2 bits (152), Expect = 4e-10
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 9/252 (3%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYC-SGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R +H AV G+ ++ GGY + DY + D+ S W L +
Sbjct: 328 RASHKAVVNGNIMWIVGGYMFNHSDYNMVLAYDL-----ASREWLAL--------NSSVN 374
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEG-ACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
+RYGHS L D ++++GG+ D+ G N L F ++ W A GH
Sbjct: 375 SVVVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKEQYAVVGH 434
Query: 558 SACVLGKT-----MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSAT 722
SA ++ T M + G+ L SN + + D TW+++ T+G + HS+
Sbjct: 435 SAHIVTLTSGRVVMLVIFGHCPLYGYISN-VQEYDLDKNTWSILHTQGALVQGGYGHSSV 493
Query: 723 M--LGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSA 896
+ +YV GG + F +N + + ++ T+ W + R H+A
Sbjct: 494 FDHITRALYVHGG----YKAFSANKYRLADDLYRYNVDTQMWTILKDSRFF---RYLHTA 546
Query: 897 FGYNGELYIFGG 932
+G + +FGG
Sbjct: 547 VIVSGTMLVFGG 558
Score = 50.4 bits (119), Expect = 3e-06
Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 10/255 (3%)
Frame = +3
Query: 360 TRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVP 539
TR + + R H V+ + +++ GG N++ A+D+ + +W +
Sbjct: 317 TREEYTNLKLPRASHKAVVNGNIMWIVGGYMFNHSDYNMVLAYDLASREWLALNSSVNSV 376
Query: 540 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 719
R GHS + +Y++GG +N++ +W L+ K HSA
Sbjct: 377 VVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKEQYAVVGHSA 436
Query: 720 ---TMLGNH--MYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
T+ M V G +G Y + ++ +D W L +G
Sbjct: 437 HIVTLTSGRVVMLVIFGHCPLYG--------YISNVQEYDLDKNTWSILHTQGALVQGGY 488
Query: 885 SHSAF--GYNGELYIFGGY---NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQC 1049
HS+ LY+ GGY +A R DL+++N + W ++ R
Sbjct: 489 GHSSVFDHITRALYVHGGYKAFSANKYRLADDLYRYNVDTQMWTILK---DSRFFRYLHT 545
Query: 1050 CCIVGDKIVLFGGTS 1094
IV +++FGG +
Sbjct: 546 AVIVSGTMLVFGGNT 560
>ref|XP_001925243.3| PREDICTED: kelch domain-containing protein 2 [Sus scrofa].
Length = 344
Score = 67.4 bits (163), Expect = 2e-11
Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 27/263 (10%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHK----WSTPRVAGTVPGAR 548
VP G V +D ++L+GG + + G N Y D + W G P ++
Sbjct: 25 VPPSMSGSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLHWERIDCQGIPPSSK 83
Query: 549 DGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTSTMTW 665
D V + FGGY L + +++ +H LDT T W
Sbjct: 84 DKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFIW 143
Query: 666 TLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWL 845
+ T G R H+ +GN +VFGGR + N + + T W
Sbjct: 144 SQPITTGKAPSPRAAHACATVGNKGFVFGGR---------YRDARMNDLHYLNLDTWEWN 194
Query: 846 DCPPTPVLPEGRRSHSAFGYNGE-LYIFGGYNARLNRHFHDLWKFNPVSFTWKKI-EPKG 1019
+ P + P GR HS + + L++FGG+ + D W + W + P
Sbjct: 195 ELIPQGICPVGRSWHSLTPVSSDHLFLFGGFTTD-KQPLSDAWTYCISKNEWIQFNHPYT 253
Query: 1020 KGPCPRRRQCCCIVGDKIVLFGG 1088
+ P C G+ +++FGG
Sbjct: 254 EKPRLWHTACASDEGE-VIVFGG 275
Score = 58.2 bits (139), Expect = 1e-08
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 21/208 (10%)
Frame = +3
Query: 528 GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST----MTWTLICTKGNPA 695
G VP + G A + + +Y+FGG+ + +N + LD+ + + W I +G P
Sbjct: 23 GDVPPSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRSTDRVLHWERIDCQGIPP 80
Query: 696 RWRDFHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN---------RIRVFDTRT 833
+D + N + FGG D+ G F + + N + + DT T
Sbjct: 81 SSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTET 140
Query: 834 EAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLNRHFHDLWKFNPVSFTWKKI 1007
W T P R +H+ + ++FGG +AR+N DL N ++ W ++
Sbjct: 141 FIWSQPITTGKAPSPRAAHACATVGNKGFVFGGRYRDARMN----DLHYLNLDTWEWNEL 196
Query: 1008 EPKGKGPCPRR-RQCCCIVGDKIVLFGG 1088
P+G P R + D + LFGG
Sbjct: 197 IPQGICPVGRSWHSLTPVSSDHLFLFGG 224
>ref|XP_003127683.1| PREDICTED: f-box only protein 42-like [Sus scrofa].
Length = 717
Score = 64.3 bits (155), Expect = 2e-10
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 18/248 (7%)
Frame = +3
Query: 393 RYGHSTVLID--DTVFLWGG--RNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
R+ HS D +++++GG ++ A N L+ D+N+ +W P +G+ P + G +
Sbjct: 119 RFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGAT 178
Query: 561 ACVLGKTMYIFGGYEQLA-------DCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 719
V + +FGG+ + + + F ++IH S W I T P HS+
Sbjct: 179 LVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAG-HSS 237
Query: 720 TMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLD---CPPTPVLPEGRRSH 890
++ + M VFGG G +N+++ V D AW P+P P G +S
Sbjct: 238 CVIDDKMIVFGG---SLGSRQMSNDVW-----VLDLEQWAWSKPNISGPSP-HPRGGQSQ 288
Query: 891 SAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWK----KIEPKGKGPCPRRRQCCCI 1058
+ + I GG N F D W + S W K+E + G C
Sbjct: 289 IVID-DATILILGGCGGP-NALFKDAWLLHMHSGPWAWQPLKVENEDHGAPELWCHPACR 346
Query: 1059 VGDKIVLF 1082
VG +V+F
Sbjct: 347 VGQCVVVF 354
Score = 57.0 bits (136), Expect = 3e-08
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 4/196 (2%)
Frame = +3
Query: 528 GTVPGARDGHSACVL--GKTMYIFGGYEQLA-DCFSNDIHKLDTSTMTWTLICTKGNPAR 698
GT R HSAC ++MY+FGG Q + + ND+ +LD ++ W G+
Sbjct: 113 GTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPS 172
Query: 699 WRDFHSATMLGNHMYVFGGRADRFGPFHSNN-EIYCNRIRVFDTRTEAWLDCPPTPVLPE 875
+ + + + + +FGG R P+ + E + + I + ++ W +C T P
Sbjct: 173 PKAGATLVVYKDLLVLFGGWT-RPSPYPLHQPERFFDEIHTYSP-SKNWWNCIVTTHGPP 230
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
HS+ + ++ +FGG + + +D+W + + W K G P PR Q
Sbjct: 231 PMAGHSSCVIDDKMIVFGG-SLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQI 289
Query: 1056 IVGDKIVLFGGTSPSP 1103
++ D +L G P
Sbjct: 290 VIDDATILILGGCGGP 305
Score = 50.4 bits (119), Expect = 3e-06
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +3
Query: 852 PPTPVLPEGRRSHSAFGY--NGELYIFGGYN-ARLNRHFHDLWKFNPVSFTWKKIEPKGK 1022
P TP+ R SHSA Y N +Y+FGG + N F+DLW+ + S W + G
Sbjct: 112 PGTPITQ--RFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGS 169
Query: 1023 GPCPRRRQCCCIVGDKIVLFGG-TSPSP 1103
P P+ + D +VLFGG T PSP
Sbjct: 170 YPSPKAGATLVVYKDLLVLFGGWTRPSP 197
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,242,232
Number of extensions: 1609599
Number of successful extensions: 8827
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 8563
Number of HSP's successfully gapped: 50
Length of query: 535
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 431
Effective length of database: 8,754,644
Effective search space: 3773251564
Effective search space used: 3773251564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012852
(1606 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157201.2| kelch domain-containing protein 3 [Mus muscu... 780 0.0
Alignment gi|NP_082186.2| kelch domain-containing protein 3 [Mus musculus]. 780 0.0
Alignment gi|NP_001074687.1| host cell factor 2 [Mus musculus]. 114 3e-25
Alignment gi|NP_032250.2| host cell factor 1 [Mus musculus]. 111 1e-24
Alignment gi|NP_663497.2| rab9 effector protein with kelch motifs [Mus mu... 87 3e-17
Alignment gi|NP_081393.2| kelch domain-containing protein 2 [Mus musculus]. 85 2e-16
Alignment gi|NP_839984.1| kelch domain-containing protein 1 [Mus musculus]. 83 5e-16
Alignment gi|NP_852080.3| attractin-like protein 1 precursor [Mus musculu... 81 3e-15
Alignment gi|NP_080084.2| leucine-zipper-like transcriptional regulator 1... 75 1e-13
Alignment gi|NP_033860.2| attractin precursor [Mus musculus]. 74 4e-13
>ref|NP_001157201.2| kelch domain-containing protein 3 [Mus musculus].
Length = 382
Score = 780 bits (2014), Expect = 0.0
Identities = 362/382 (94%), Positives = 365/382 (95%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+G VPGARDGHSACVLGK MYIFGGYEQLADCFSNDIHKLDTSTMTWTL+CTKGNPARWR
Sbjct: 121 SGAVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP TPVLPEGRR
Sbjct: 181 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNP SFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGDEF FSPSLKTLCKLAVIQY+LDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYSLDQSCLPHDI 360
Query: 1245 RWELNAMTTNSNISRPIVSSHG 1310
RWELNAMTTNSNISRPIVSSHG
Sbjct: 361 RWELNAMTTNSNISRPIVSSHG 382
>ref|NP_082186.2| kelch domain-containing protein 3 [Mus musculus].
Length = 382
Score = 780 bits (2014), Expect = 0.0
Identities = 362/382 (94%), Positives = 365/382 (95%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+G VPGARDGHSACVLGK MYIFGGYEQLADCFSNDIHKLDTSTMTWTL+CTKGNPARWR
Sbjct: 121 SGAVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP TPVLPEGRR
Sbjct: 181 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNP SFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGDEF FSPSLKTLCKLAVIQY+LDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYSLDQSCLPHDI 360
Query: 1245 RWELNAMTTNSNISRPIVSSHG 1310
RWELNAMTTNSNISRPIVSSHG
Sbjct: 361 RWELNAMTTNSNISRPIVSSHG 382
>ref|NP_001074687.1| host cell factor 2 [Mus musculus].
Length = 722
Score = 114 bits (284), Expect = 3e-25
Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 15/258 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARW----RDFHSATML 728
G + +FGG + +SN++++L S W + + P+ + R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPQPPPSGFPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W V+P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPATKGVVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 IIYCKKDSASPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEE 1109
++G+K+ +FGG P E
Sbjct: 252 VIGNKMYIFGGWVPHKGE 269
Score = 66.6 bits (161), Expect = 5e-11
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V PAT+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPATKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
VVP R H+ ++ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --VVPSPRESHTAIIYCKKDSASPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY---------EQLADC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENPETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|NP_032250.2| host cell factor 1 [Mus musculus].
Length = 2045
Score = 111 bits (278), Expect = 1e-24
Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 16/260 (6%)
Frame = +3
Query: 366 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 545
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 546 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 713
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 714 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 878
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 879 RRSHSAFGYN------GELYIFGGYNA-RLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR 1037
R SH+A Y +L I+GG + RL DLW + + TW K G P PR
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGGMSGCRLG----DLWTLDIETLTWNKPSLSGVAPLPR 255
Query: 1038 RRQCCCIVGDKIVLFGGTSP 1097
+G+K+ +FGG P
Sbjct: 256 SLHSATTIGNKMYVFGGWVP 275
Score = 80.1 bits (196), Expect = 5e-15
Identities = 81/281 (28%), Positives = 108/281 (38%), Gaps = 31/281 (11%)
Frame = +3
Query: 222 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 401
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 402 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 545
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 546 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 707
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 708 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 863
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 864 VLPEGRRSHSAFGYNGELYIFG---GYNARLNRHF--HDLW 971
+P R H A N LYI+ GY N DLW
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLW 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +3
Query: 684 GNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTP 863
G R R H A + + VFGG NE + + V++T T W
Sbjct: 27 GPVPRPRHGHRAVAIKELIVVFGG----------GNEGIVDELHVYNTATNQWFIPAVRG 76
Query: 864 VLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPK----GKGPC 1031
+P G ++ L +FGG ++ +DL++ + WK+++ K G PC
Sbjct: 77 DIPPGCAAYGFVCDGTRLLVFGGM-VEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135
Query: 1032 PRRRQCCCIVGDKIVLFGGTSPSPEE 1109
PR +VG+K LFGG + E+
Sbjct: 136 PRLGHSFSLVGNKCYLFGGLANDSED 161
>ref|NP_663497.2| rab9 effector protein with kelch motifs [Mus musculus].
Length = 380
Score = 87.4 bits (215), Expect = 3e-17
Identities = 71/262 (27%), Positives = 116/262 (44%), Gaps = 7/262 (2%)
Frame = +3
Query: 297 DVHIFNAVSLRWTKLPPVRPATR-GQAPVVPYMRYGHSTVLID---DTVFLWGGRNDTEG 464
DVH + + +W ATR G P RY H++ L +++++GG D G
Sbjct: 72 DVHTMDLGTHQWDT------ATREGLLP-----RYEHASFLPSCSPHSIWVFGGA-DQSG 119
Query: 465 ACNVLYAFDVNTHKWSTPRVAGTVPGARDGH-SACVLGKTMYIFGGYEQLADCFSN-DIH 638
N L WSTP V G+ P R H S+ +G +Y+FGG E+ A + +H
Sbjct: 120 NRNCLQVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLH 179
Query: 639 KLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRA-DRFGPFHSNNEIYCNRIR 815
D +T+TW+ T G+P R H G +++ GG A D+F ++++C
Sbjct: 180 VFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGLAGDKFF-----DDLHC---- 230
Query: 816 VFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFT 995
D +W PT +P G +H+A +Y+FGG A + ++K++
Sbjct: 231 -IDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTA--TGALNMMYKYHTEKQH 287
Query: 996 WKKIEPKGKGPCPRRRQCCCIV 1061
W ++ P R C++
Sbjct: 288 WTVLQFDTSLPAGRLDHSMCVI 309
Score = 80.9 bits (198), Expect = 3e-15
Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 11/246 (4%)
Frame = +3
Query: 384 PYMRYGHSTVLIDDT-------VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPG 542
P R GHS +F+ GG N + +V + D+ TH+W T G +P
Sbjct: 36 PCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDV-HTMDLGTHQWDTATREGLLP- 93
Query: 543 ARDGHSACVLG---KTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFH 713
R H++ + ++++FGG +Q + N + + TW+ G+P R FH
Sbjct: 94 -RYEHASFLPSCSPHSIWVFGGADQSGN--RNCLQVMSPEDRTWSTPEVTGSPPSPRTFH 150
Query: 714 -SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSH 890
S+ +GN +YVFGG P ++ VFD T W P R H
Sbjct: 151 TSSAAIGNQLYVFGGGERGAQPVEDV------KLHVFDANTLTWSQPETHGSPPSPRHGH 204
Query: 891 SAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDK 1070
+L+I GG ++ F DL + +W+K+ P G P VG
Sbjct: 205 VMVAAGTKLFIHGGLAG--DKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHH 262
Query: 1071 IVLFGG 1088
+ +FGG
Sbjct: 263 VYMFGG 268
Score = 71.2 bits (173), Expect = 2e-12
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 8/252 (3%)
Frame = +3
Query: 162 GMLRW-TVHLEGGPRRVNHAAVAVG---HRVYSFGGYCSGEDYETLRQIDVHIFNAVSLR 329
G +W T EG R HA+ H ++ FGG + L+ + +
Sbjct: 79 GTHQWDTATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQ-----VMSPEDRT 133
Query: 330 WTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNV----LYAFDVN 497
W+ P G P + S+ I + ++++GG GA V L+ FD N
Sbjct: 134 WST-----PEVTGSPPSP--RTFHTSSAAIGNQLYVFGGGE--RGAQPVEDVKLHVFDAN 184
Query: 498 THKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 677
T WS P G+ P R GH G ++I GG D F +D+H +D M+W +
Sbjct: 185 TLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGL--AGDKFFDDLHCIDIGDMSWQKLG 242
Query: 678 TKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 857
G H+A +G+H+Y+FGG N + + T + W
Sbjct: 243 PTGAVPVGCAAHAAVAVGHHVYMFGGMTATGA---------LNMMYKYHTEKQHWTVLQF 293
Query: 858 TPVLPEGRRSHS 893
LP GR HS
Sbjct: 294 DTSLPAGRLDHS 305
Score = 51.6 bits (122), Expect = 2e-06
Identities = 61/219 (27%), Positives = 83/219 (37%), Gaps = 12/219 (5%)
Frame = +3
Query: 507 WSTPRVAGTVPGARDGHSACVL--------GKTMYIFGGYEQLADCFSNDIHKLDTSTMT 662
W T G P R GHS GK ++I GG FS D+H +D T
Sbjct: 26 WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGK-IFIVGGANP-NQSFS-DVHTMDLGTHQ 82
Query: 663 WTLICTKGNPARWRDFHSATMLGNH-MYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
W +G R+ H ++VFGG AD+ G N ++V
Sbjct: 83 WDTATREGLLPRYEHASFLPSCSPHSIWVFGG-ADQSGNR--------NCLQVMSPEDRT 133
Query: 840 WLDCPPTPVLPEGRRSH-SAFGYNGELYIFGGYNARLNRHFHD--LWKFNPVSFTWKKIE 1010
W T P R H S+ +LY+FGG R + D L F+ + TW + E
Sbjct: 134 WSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGG-GERGAQPVEDVKLHVFDANTLTWSQPE 192
Query: 1011 PKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEF 1127
G P PR G K+ + GG + GD+F
Sbjct: 193 THGSPPSPRHGHVMVAAGTKLFIHGGLA-------GDKF 224
>ref|NP_081393.2| kelch domain-containing protein 2 [Mus musculus].
Length = 406
Score = 84.7 bits (208), Expect = 2e-16
Identities = 82/327 (25%), Positives = 131/327 (40%), Gaps = 32/327 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGE-----DYETLRQIDVHIFNAVSLRWTKLPPVRPATRG 368
R H AV+ G ++ +GGY S + D+ R+ ++ I+N + RW K+ T G
Sbjct: 32 RSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPRE-ELWIYNMETGRWKKIN-----TEG 85
Query: 369 QAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH----KWSTPRVAGTV 536
P P M G V +D ++L+GG + + G N Y D + +W G
Sbjct: 86 DVP--PSMS-GSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSADRGLQWERIDCQGIP 141
Query: 537 PGARDGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTS 653
P ++D V + FGGY L + +++ +H LDT
Sbjct: 142 PSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTE 201
Query: 654 TMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRT 833
T W+ T G R H+ +GN +VFGGR + N + + T
Sbjct: 202 TFAWSQPITTGKAPSPRAAHACATVGNKGFVFGGR---------YRDARMNDLHYLNLDT 252
Query: 834 EAWLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGYNARLNRHFHDLWKFNPVSFTWKKI- 1007
W + P V P GR HS + + L++FGG+ + D W + W +
Sbjct: 253 WEWNELIPQGVCPVGRSWHSLTPVSSDHLFLFGGFTTE-KQPLSDAWTYCISKNEWIQFN 311
Query: 1008 EPKGKGPCPRRRQCCCIVGDKIVLFGG 1088
P + P C G+ +++FGG
Sbjct: 312 HPYVEKPRLWHTACASDEGE-VIVFGG 337
Score = 77.0 bits (188), Expect = 4e-14
Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 29/264 (10%)
Frame = +3
Query: 384 PYMRYGHSTVLIDDTVFLWGG--RNDTEGACNV------LYAFDVNTHKWSTPRVAGTVP 539
P R GH V +F+WGG N G + L+ +++ T +W G VP
Sbjct: 29 PAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWIYNMETGRWKKINTEGDVP 88
Query: 540 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST----MTWTLICTKGNPARWRD 707
+ G A + + +Y+FGG+ + +N + LD+ + + W I +G P +D
Sbjct: 89 PSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRSADRGLQWERIDCQGIPPSSKD 146
Query: 708 FHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN---------RIRVFDTRTEAWL 845
+ N + FGG D+ G F + + N + + DT T AW
Sbjct: 147 KLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFAWS 206
Query: 846 DCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLNRHFHDLWKFNPVSFTWKKIEPKG 1019
T P R +H+ + ++FGG +AR+N DL N ++ W ++ P+G
Sbjct: 207 QPITTGKAPSPRAAHACATVGNKGFVFGGRYRDARMN----DLHYLNLDTWEWNELIPQG 262
Query: 1020 KGPCPRR-RQCCCIVGDKIVLFGG 1088
P R + D + LFGG
Sbjct: 263 VCPVGRSWHSLTPVSSDHLFLFGG 286
>ref|NP_839984.1| kelch domain-containing protein 1 [Mus musculus].
Length = 406
Score = 83.2 bits (204), Expect = 5e-16
Identities = 97/332 (29%), Positives = 137/332 (41%), Gaps = 36/332 (10%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R H AV GH +Y +GGY S ED E L ++ ++ S W G+ P
Sbjct: 13 RSGHCAVVDGHFLYVWGGYVSIEDNEVYLPNDEMWTYDIDSGLWK-----MHLMEGELP- 66
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 545
P M G I ++++GG +D +G N LY ++ T+ W + G P
Sbjct: 67 -PSMS-GSCGACIHGRLYVFGGYDD-KGYSNRLYFVNLRTRDGTYTWEKITKFDGQPPTP 123
Query: 546 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 665
RD S V + FGGY +L +CF ND+H DT T TW
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGYRRHSELQECFDVHDASWEEQIFWGWHNDVHVFDTKTRTW 183
Query: 666 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRA--DRFGPFHSNN---EIYCNRIRVFDT 827
+ KG P + R HS +LGN YVFGGR R H N ++ RI V
Sbjct: 184 SQPEIKGGVPPQPRAAHSCAVLGNKGYVFGGRVLQTRMNDLHYLNLDTWVWSGRISV--- 240
Query: 828 RTEAWLDCPPTPVLPEGRRSHSAFGY-NGELYIFGGYNARLNRHFHDLWKFNPVSFTWKK 1004
P+ R H+ + +L++FGG NA N D W N + WK+
Sbjct: 241 ----------NGESPKHRSWHTLTAITDDKLFLFGGLNAD-NIPLSDGWIHNITTNCWKQ 289
Query: 1005 IEPKGKGPCPRRR---QCCCIVGDKIVLFGGT 1091
+ P R R C ++I++FGG+
Sbjct: 290 LRHL---PYTRPRLWHTACLGKENEIMVFGGS 318
Score = 74.3 bits (181), Expect = 2e-13
Identities = 73/267 (27%), Positives = 115/267 (43%), Gaps = 27/267 (10%)
Frame = +3
Query: 369 QAPVVPYMRYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGT 533
QA V R GH V+ +++WGG N+ + ++ +D+++ W + G
Sbjct: 5 QAFCVAEERSGHCAVVDGHFLYVWGGYVSIEDNEVYLPNDEMWTYDIDSGLWKMHLMEGE 64
Query: 534 VPGARDGH-SACVLGKTMYIFGGYEQLADCFSNDIH----KLDTSTMTWTLICT-KGNPA 695
+P + G AC+ G+ +Y+FGGY+ +SN ++ + T TW I G P
Sbjct: 65 LPPSMSGSCGACIHGR-LYVFGGYDDKG--YSNRLYFVNLRTRDGTYTWEKITKFDGQPP 121
Query: 696 RWRDFHSATMLGNHMYVFGGRADR--------FGPFHSNNEI-----YCNRIRVFDTRTE 836
RD S + + + FGG R F ++ E + N + VFDT+T
Sbjct: 122 TPRDKLSCWVYKDRLIYFGGYGYRRHSELQECFDVHDASWEEQIFWGWHNDVHVFDTKTR 181
Query: 837 AWLDCP-PTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWK-KIE 1010
W V P+ R +HS + Y+FGG L +DL N ++ W +I
Sbjct: 182 TWSQPEIKGGVPPQPRAAHSCAVLGNKGYVFGG--RVLQTRMNDLHYLNLDTWVWSGRIS 239
Query: 1011 PKGKGPCPRR-RQCCCIVGDKIVLFGG 1088
G+ P R I DK+ LFGG
Sbjct: 240 VNGESPKHRSWHTLTAITDDKLFLFGG 266
>ref|NP_852080.3| attractin-like protein 1 precursor [Mus musculus].
Length = 1378
Score = 80.9 bits (198), Expect = 3e-15
Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 13/276 (4%)
Frame = +3
Query: 195 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 368
GP +R H+ ++ +GG D ++ +FN S W TK P V ++
Sbjct: 350 GPLQRYGHSLALYQENIFMYGGRMETSDGNVTDEL--WVFNVRSQSWSTKTPTVLGHSQ- 406
Query: 369 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 407 -----QYAVEGHSAHIMELDSRDVVMIVIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 461
Query: 534 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 698
+ GH++ + K++Y+ GGY+ L +D++K + +T TWT++ G
Sbjct: 462 IVQGGYGHTSVYDEVTKSIYVHGGYKALPGNKYGLVDDLYKYEVNTRTWTILKESGFA-- 519
Query: 699 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 875
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 520 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKTLPKPNLHRDV 578
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNP 983
R HSA NG +YIFGG+++ L +D+ + P
Sbjct: 579 NRFGHSAVVINGSMYIFGGFSSVL---LNDILVYKP 611
>ref|NP_080084.2| leucine-zipper-like transcriptional regulator 1 [Mus musculus].
Length = 837
Score = 75.5 bits (184), Expect = 1e-13
Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 13/269 (4%)
Frame = +3
Query: 327 RWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHK 506
RW +LPP V R H+ V D ++++GG N + N L FDV
Sbjct: 50 RWRRLPPCDE-------FVGARRSKHTVVAYKDAIYVFGGDNG-KTMLNDLLRFDVKDCS 101
Query: 507 WSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS-------NDIHKLDTSTMTW 665
W GT P R HSA V G +M++FGGY D +S ND+ + +T W
Sbjct: 102 WCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGY--TGDIYSNSNLKNKNDLFEYKFATGQW 159
Query: 666 TLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWL 845
T +G R H AT+ + +++F G + N+++ I + D W
Sbjct: 160 TEWKIEGRLPVARSAHGATVYSDKLWIFAG----YDGNARLNDMW--TIGLQDRELTCWE 213
Query: 846 DCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEP---- 1013
+ + +P + ++++F G + + ++L++F TW +I
Sbjct: 214 EVAQSGEIPPSCCNFPVAVCRDKMFVFSGQSGA--KITNNLFQFEFKDKTWTRIPTEHLL 271
Query: 1014 KGKGPCPRRRQCCCIVG--DKIVLFGGTS 1094
+G P P+RR +V + +FGG +
Sbjct: 272 RGSPPPPQRRYGHTMVAFDRHLYVFGGAA 300
Score = 64.7 bits (156), Expect = 2e-10
Identities = 68/279 (24%), Positives = 105/279 (37%), Gaps = 63/279 (22%)
Frame = +3
Query: 195 GPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQA 374
G RR H VA +Y FGG ++ +T+ D+ F+ W R T G
Sbjct: 62 GARRSKHTVVAYKDAIYVFGG----DNGKTMLN-DLLRFDVKDCSWC-----RAFTTGTP 111
Query: 375 PVVPYMRYGHSTVLIDDTVFLWGG------RNDTEGACNVLYAFDVNTHKWSTPRVAGTV 536
P RY HS V+ ++F++GG N N L+ + T +W+ ++ G +
Sbjct: 112 PAP---RYHHSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRL 168
Query: 537 PGARDGHSACVLGKTMYIFGGYE------------------------------------- 605
P AR H A V ++IF GY+
Sbjct: 169 PVARSAHGATVYSDKLWIFAGYDGNARLNDMWTIGLQDRELTCWEEVAQSGEIPPSCCNF 228
Query: 606 QLADC--------------FSNDIHKLDTSTMTWTLICT----KGNPA--RWRDFHSATM 725
+A C +N++ + + TWT I T +G+P + R H+
Sbjct: 229 PVAVCRDKMFVFSGQSGAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVA 288
Query: 726 LGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW 842
H+YVFGG AD P NE++C +D + W
Sbjct: 289 FDRHLYVFGGAADNTLP----NELHC-----YDVDFQTW 318
Score = 49.3 bits (116), Expect = 9e-06
Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 6/195 (3%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 377
P N +++ F G + L Q F WT++P RG P
Sbjct: 223 PSCCNFPVAVCRDKMFVFSGQSGAKITNNLFQ-----FEFKDKTWTRIP-TEHLLRGSPP 276
Query: 378 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKW------STPRVAGTVP 539
P RYGH+ V D ++++GG D N L+ +DV+ W S V G
Sbjct: 277 P-PQRRYGHTMVAFDRHLYVFGGAADNT-LPNELHCYDVDFQTWEVVQPSSDSEVGGAEM 334
Query: 540 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 719
R S T +++ D F D T++ + P+ R FH+A
Sbjct: 335 PERASSSEDASTLTSEERSSFKKSRDVFGLDF---GTTSAKQPVHLASELPSG-RLFHAA 390
Query: 720 TMLGNHMYVFGGRAD 764
++ + MY+FGG D
Sbjct: 391 AVISDAMYIFGGTVD 405
>ref|NP_033860.2| attractin precursor [Mus musculus].
Length = 1428
Score = 73.6 bits (179), Expect = 4e-13
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 14/261 (5%)
Frame = +3
Query: 207 VNHAAVAVGH-------RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATR 365
VN V GH ++Y +GG T HI N + T + A
Sbjct: 385 VNSVVVRYGHSLALHKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKDQYAVV 444
Query: 366 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 545
G + + + G +L+ +F G G +V+ +D+ + WS G +
Sbjct: 445 GHSAHIVTLASGRVVMLV---IF---GHCPLYGYISVVQEYDLEKNTWSILHTQGALVQG 498
Query: 546 RDGHSACVLGKT--MYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPARWRDF 710
GHS+ +T +Y+ GGY+ + ++D+++ D T WT++ + +R
Sbjct: 499 GYGHSSVYDDRTKALYVHGGYKAFSANKYRLADDLYRYDVDTQMWTIL---KDSRFFRYL 555
Query: 711 HSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPE--GRR 884
H+A ++ M VFGG + + + +D + W P P L R
Sbjct: 556 HTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRW-SVLPRPELHHDVNRF 614
Query: 885 SHSAFGYNGELYIFGGYNARL 947
HSA YN +Y+FGG+N+ L
Sbjct: 615 GHSAVLYNSTMYVFGGFNSLL 635
Score = 58.9 bits (141), Expect = 1e-08
Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 14/257 (5%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYC-SGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R +H AV G+ ++ GGY + DY + D+ S W P V
Sbjct: 340 RASHKAVVNGNIMWVVGGYMFNHSDYSMVLAYDL-----TSREWL------PLNHSVNSV 388
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEG-ACNVLYAFDVNTHKWSTPRVAGTVPGARD-- 551
V +RYGHS L D ++++GG+ D+ G N L F ++ W P A+D
Sbjct: 389 V--VRYGHSLALHKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVL-----LTPKAKDQY 441
Query: 552 ---GHSACVL----GK-TMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 707
GHSA ++ G+ M + G+ L + + + + D TW+++ T+G +
Sbjct: 442 AVVGHSAHIVTLASGRVVMLVIFGHCPLYG-YISVVQEYDLEKNTWSILHTQGALVQGGY 500
Query: 708 FHSATM--LGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGR 881
HS+ +YV GG + F +N + + +D T+ W + R
Sbjct: 501 GHSSVYDDRTKALYVHGG----YKAFSANKYRLADDLYRYDVDTQMWTILKDSRFF---R 553
Query: 882 RSHSAFGYNGELYIFGG 932
H+A +G + +FGG
Sbjct: 554 YLHTAVIVSGTMLVFGG 570
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,230,782
Number of extensions: 1999231
Number of successful extensions: 9878
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 9534
Number of HSP's successfully gapped: 56
Length of query: 535
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 429
Effective length of database: 12,433,743
Effective search space: 5334075747
Effective search space used: 5334075747
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012852
(1606 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_476502.1| kelch domain-containing protein 3 isoform 1 [Ho... 775 0.0
Alignment gi|NP_001229801.1| kelch domain-containing protein 3 isoform 2 ... 667 0.0
Alignment gi|NP_037452.1| host cell factor 2 [Homo sapiens]. 112 7e-25
Alignment gi|NP_005325.2| host cell factor 1 [Homo sapiens]. 111 2e-24
Alignment gi|NP_055130.1| kelch domain-containing protein 2 [Homo sapiens]. 86 8e-17
Alignment gi|NP_001167623.1| rab9 effector protein with kelch motifs isof... 85 2e-16
Alignment gi|NP_005824.2| rab9 effector protein with kelch motifs isoform... 85 2e-16
Alignment gi|NP_001167624.1| rab9 effector protein with kelch motifs isof... 81 2e-15
Alignment gi|NP_997186.1| attractin-like protein 1 precursor [Homo sapien... 81 3e-15
Alignment gi|NP_751943.1| kelch domain-containing protein 1 [Homo sapiens]. 75 1e-13
>ref|NP_476502.1| kelch domain-containing protein 3 isoform 1 [Homo sapiens].
Length = 382
Score = 775 bits (2001), Expect = 0.0
Identities = 360/382 (94%), Positives = 364/382 (95%)
Frame = +3
Query: 165 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 344
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 345 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 524
PV+ A RGQAPVVPYMRYGHSTVLIDDTV LWGGRNDTEGACNVLYAFDVNTHKW TPRV
Sbjct: 61 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV 120
Query: 525 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 704
+GTVPGARDGHSACVLGK MYIFGGYEQ ADCFSNDIHKLDTSTMTWTLICTKG+PARWR
Sbjct: 121 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR 180
Query: 705 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 884
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 885 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 1064
SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVG 300
Query: 1065 DKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNLDQSCLPHDI 1244
DKIVLFGGTSPSPEEGLGDEF FSPSLKTLCKLAVIQYNLDQSCLPHDI
Sbjct: 301 DKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDI 360
Query: 1245 RWELNAMTTNSNISRPIVSSHG 1310
RWELNAMTTNSNISRPIVSSHG
Sbjct: 361 RWELNAMTTNSNISRPIVSSHG 382
>ref|NP_001229801.1| kelch domain-containing protein 3 isoform 2 [Homo sapiens].
Length = 367
Score = 667 bits (1721), Expect = 0.0
Identities = 309/331 (93%), Positives = 313/331 (94%)
Frame = +3
Query: 318 VSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVN 497
VSLRWTKLPPV+ A RGQAPVVPYMRYGHSTVLIDDTV LWGGRNDTEGACNVLYAFDVN
Sbjct: 37 VSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVN 96
Query: 498 THKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 677
THKW TPRV+GTVPGARDGHSACVLGK MYIFGGYEQ ADCFSNDIHKLDTSTMTWTLIC
Sbjct: 97 THKWFTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLIC 156
Query: 678 TKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 857
TKG+PARWRDFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP
Sbjct: 157 TKGSPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 216
Query: 858 TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR 1037
TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR
Sbjct: 217 TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR 276
Query: 1038 RRQCCCIVGDKIVLFGGTSPSPEEGLGDEFXXXXXXXXXXXXFSPSLKTLCKLAVIQYNL 1217
RRQCCCIVGDKIVLFGGTSPSPEEGLGDEF FSPSLKTLCKLAVIQYNL
Sbjct: 277 RRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNL 336
Query: 1218 DQSCLPHDIRWELNAMTTNSNISRPIVSSHG 1310
DQSCLPHDIRWELNAMTTNSNISRPIVSSHG
Sbjct: 337 DQSCLPHDIRWELNAMTTNSNISRPIVSSHG 367
Score = 73.9 bits (180), Expect = 4e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 383
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 113 RDGHSACVLGKIMYIFGGY---EQQADCFSNDIHKLDTSTMTWTLI-----CTKGSP--- 161
Query: 384 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 539
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 162 ARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 221
Query: 540 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 719
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 222 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 281
Query: 720 TMLGNHMYVFGG 755
++G+ + +FGG
Sbjct: 282 CIVGDKIVLFGG 293
>ref|NP_037452.1| host cell factor 2 [Homo sapiens].
Length = 792
Score = 112 bits (281), Expect = 7e-25
Identities = 77/258 (29%), Positives = 122/258 (47%), Gaps = 15/258 (5%)
Frame = +3
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 560
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTATNQWFLPAVRGDIPPGCAAHG 76
Query: 561 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICT----KGNPARWRDFHSATML 728
G + +FGG + +SN++++L S W + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPPSGLPPCPRLGHSFSLY 135
Query: 729 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 896
GN Y+FGG A+ ++N Y N + + W V+P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGVVPSPRESHTA 195
Query: 897 FGY------NGELYIFGGY-NARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
Y + ++Y+FGG ARL+ DLW+ + + +W K E KG P PR
Sbjct: 196 VIYCKKDSGSPKMYVFGGMCGARLD----DLWQLDLETMSWSKPETKGTVPLPRSLHTAS 251
Query: 1056 IVGDKIVLFGGTSPSPEE 1109
++G+K+ +FGG P E
Sbjct: 252 VIGNKMYIFGGWVPHKGE 269
Score = 65.5 bits (158), Expect = 1e-10
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 28/248 (11%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 371
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 372 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
VVP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --VVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 534 VPGARDGHSACVLGKTMYIFGGY---------EQLADC---FSNDIHKLDTSTMTWTLIC 677
VP R H+A V+G MYIFGG+ DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENTETSPHDCEWRCTSSFSYLNLDTTEWTTLV 300
Query: 678 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 840 WLDCPPTP 863
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|NP_005325.2| host cell factor 1 [Homo sapiens].
Length = 2035
Score = 111 bits (277), Expect = 2e-24
Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 16/260 (6%)
Frame = +3
Query: 366 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 545
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 546 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 713
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 714 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 878
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 879 RRSHSAFGYN------GELYIFGGYNA-RLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPR 1037
R SH+A Y +L I+GG + RL DLW + + TW K G P PR
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGGMSGCRLG----DLWTLDIDTLTWNKPSLSGVAPLPR 255
Query: 1038 RRQCCCIVGDKIVLFGGTSP 1097
+G+K+ +FGG P
Sbjct: 256 SLHSATTIGNKMYVFGGWVP 275
Score = 80.1 bits (196), Expect = 5e-15
Identities = 81/281 (28%), Positives = 108/281 (38%), Gaps = 31/281 (11%)
Frame = +3
Query: 222 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 401
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 402 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 545
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 546 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 707
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRS 256
Query: 708 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 863
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 864 VLPEGRRSHSAFGYNGELYIFG---GYNARLNRHF--HDLW 971
+P R H A N LYI+ GY N DLW
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLW 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +3
Query: 684 GNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTP 863
G R R H A + + VFGG NE + + V++T T W
Sbjct: 27 GPVPRPRHGHRAVAIKELIVVFGG----------GNEGIVDELHVYNTATNQWFIPAVRG 76
Query: 864 VLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPK----GKGPC 1031
+P G ++ L +FGG ++ +DL++ + WK+++ K G PC
Sbjct: 77 DIPPGCAAYGFVCDGTRLLVFGGM-VEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPC 135
Query: 1032 PRRRQCCCIVGDKIVLFGGTSPSPEE 1109
PR +VG+K LFGG + E+
Sbjct: 136 PRLGHSFSLVGNKCYLFGGLANDSED 161
>ref|NP_055130.1| kelch domain-containing protein 2 [Homo sapiens].
Length = 406
Score = 86.3 bits (212), Expect = 8e-17
Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 32/327 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGE-----DYETLRQIDVHIFNAVSLRWTKLPPVRPATRG 368
R H AV+ G ++ +GGY S + D+ R+ ++ I+N + RW K+ T G
Sbjct: 32 RSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPRE-ELWIYNMETGRWKKIN-----TEG 85
Query: 369 QAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH----KWSTPRVAGTV 536
P P M G V +D ++L+GG + + G N Y D + +W G
Sbjct: 86 DVP--PSMS-GSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLQWERIDCQGIP 141
Query: 537 PGARDGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTS 653
P ++D V + FGGY L + +++ +H LDT
Sbjct: 142 PSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTE 201
Query: 654 TMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRT 833
T TW+ T G R H+ +GN +VFGGR + N + + T
Sbjct: 202 TFTWSQPITTGKAPSPRAAHACATVGNRGFVFGGR---------YRDARMNDLHYLNLDT 252
Query: 834 EAWLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGYNARLNRHFHDLWKFNPVSFTWKKI- 1007
W + P + P GR HS + + L++FGG+ + D W + W +
Sbjct: 253 WEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGGFTTD-KQPLSDAWTYCISKNEWIQFN 311
Query: 1008 EPKGKGPCPRRRQCCCIVGDKIVLFGG 1088
P + P C G+ +++FGG
Sbjct: 312 HPYTEKPRLWHTACASDEGE-VIVFGG 337
Score = 74.7 bits (182), Expect = 2e-13
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 29/264 (10%)
Frame = +3
Query: 384 PYMRYGHSTVLIDDTVFLWGG--RNDTEGACNV------LYAFDVNTHKWSTPRVAGTVP 539
P R GH V +F+WGG N G + L+ +++ T +W G VP
Sbjct: 29 PAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWIYNMETGRWKKINTEGDVP 88
Query: 540 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST----MTWTLICTKGNPARWRD 707
+ G A + + +Y+FGG+ + +N + LD+ + + W I +G P +D
Sbjct: 89 PSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRSTDRVLQWERIDCQGIPPSSKD 146
Query: 708 FHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN---------RIRVFDTRTEAWL 845
+ N + FGG D+ G F + + N + + DT T W
Sbjct: 147 KLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFTWS 206
Query: 846 DCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLNRHFHDLWKFNPVSFTWKKIEPKG 1019
T P R +H+ ++FGG +AR+N DL N ++ W ++ P+G
Sbjct: 207 QPITTGKAPSPRAAHACATVGNRGFVFGGRYRDARMN----DLHYLNLDTWEWNELIPQG 262
Query: 1020 KGPCPRR-RQCCCIVGDKIVLFGG 1088
P R + D + LFGG
Sbjct: 263 ICPVGRSWHSLTPVSSDHLFLFGG 286
>ref|NP_001167623.1| rab9 effector protein with kelch motifs isoform a [Homo sapiens].
Length = 372
Score = 85.1 bits (209), Expect = 2e-16
Identities = 70/255 (27%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Frame = +3
Query: 384 PYMRYGHSTVLIDDT-------VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPG 542
P R GHS + VF+ GG N +V + D+ H+W G +P
Sbjct: 28 PCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDV-HTMDLGKHQWDLDTCKGLLP- 85
Query: 543 ARDGHSACVLGKT---MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFH 713
R H++ + T +++FGG Q + N + L+ T TWT P R FH
Sbjct: 86 -RYEHASFIPSCTPDRIWVFGGANQSGN--RNCLQVLNPETRTWTTPEVTSPPPSPRTFH 142
Query: 714 -SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPE 875
S+ +GN +YVFGG P ++ VFD T W L PP+P
Sbjct: 143 TSSAAIGNQLYVFGGGERGAQPVQDT------KLHVFDANTLTWSQPETLGNPPSP---- 192
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
R H +L+I GG +R + DL + W+K+ P G P
Sbjct: 193 -RHGHVMVAAGTKLFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAV 249
Query: 1056 IVGDKIVLFGGTSPS 1100
+G + +FGG +P+
Sbjct: 250 AMGKHVYIFGGMTPA 264
Score = 78.2 bits (191), Expect = 2e-14
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
Frame = +3
Query: 237 RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTK----LPPVRPATRGQAPVVPYMRYGH 404
R++ FGG + L+ + N + WT PP P T +
Sbjct: 100 RIWVFGGANQSGNRNCLQ-----VLNPETRTWTTPEVTSPPPSPRT-----------FHT 143
Query: 405 STVLIDDTVFLWGGRNDTEGACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACVL 572
S+ I + ++++GG GA V L+ FD NT WS P G P R GH
Sbjct: 144 SSAAIGNQLYVFGGGE--RGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAA 201
Query: 573 GKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFG 752
G ++I GG D F +D+H +D S M W + G HSA +G H+Y+FG
Sbjct: 202 GTKLFIHGGL--AGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFG 259
Query: 753 GRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 893
G P + + +Y + T + W +LP GR HS
Sbjct: 260 GMT----PAGALDTMY-----QYHTEEQHWTLLKFDTLLPPGRLDHS 297
Score = 68.2 bits (165), Expect = 2e-11
Identities = 45/159 (28%), Positives = 76/159 (47%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 377
PR + ++ A+G+++Y FGG G + ++ +H+F+A +L W+ +P T G
Sbjct: 138 PRTFHTSSAAIGNQLYVFGGGERGA--QPVQDTKLHVFDANTLTWS-----QPETLGNP- 189
Query: 378 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
P R+GH V +F+ GG + + L+ D++ KW G P H
Sbjct: 190 --PSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAH 246
Query: 558 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI 674
SA +GK +YIFGG + +++ T WTL+
Sbjct: 247 SAVAMGKHVYIFGGMTPAGAL--DTMYQYHTEEQHWTLL 283
>ref|NP_005824.2| rab9 effector protein with kelch motifs isoform a [Homo sapiens].
Length = 372
Score = 85.1 bits (209), Expect = 2e-16
Identities = 70/255 (27%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Frame = +3
Query: 384 PYMRYGHSTVLIDDT-------VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPG 542
P R GHS + VF+ GG N +V + D+ H+W G +P
Sbjct: 28 PCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDV-HTMDLGKHQWDLDTCKGLLP- 85
Query: 543 ARDGHSACVLGKT---MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFH 713
R H++ + T +++FGG Q + N + L+ T TWT P R FH
Sbjct: 86 -RYEHASFIPSCTPDRIWVFGGANQSGN--RNCLQVLNPETRTWTTPEVTSPPPSPRTFH 142
Query: 714 -SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTPVLPE 875
S+ +GN +YVFGG P ++ VFD T W L PP+P
Sbjct: 143 TSSAAIGNQLYVFGGGERGAQPVQDT------KLHVFDANTLTWSQPETLGNPPSP---- 192
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCC 1055
R H +L+I GG +R + DL + W+K+ P G P
Sbjct: 193 -RHGHVMVAAGTKLFIHGGLAG--DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAV 249
Query: 1056 IVGDKIVLFGGTSPS 1100
+G + +FGG +P+
Sbjct: 250 AMGKHVYIFGGMTPA 264
Score = 78.2 bits (191), Expect = 2e-14
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
Frame = +3
Query: 237 RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTK----LPPVRPATRGQAPVVPYMRYGH 404
R++ FGG + L+ + N + WT PP P T +
Sbjct: 100 RIWVFGGANQSGNRNCLQ-----VLNPETRTWTTPEVTSPPPSPRT-----------FHT 143
Query: 405 STVLIDDTVFLWGGRNDTEGACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACVL 572
S+ I + ++++GG GA V L+ FD NT WS P G P R GH
Sbjct: 144 SSAAIGNQLYVFGGGE--RGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAA 201
Query: 573 GKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFG 752
G ++I GG D F +D+H +D S M W + G HSA +G H+Y+FG
Sbjct: 202 GTKLFIHGGL--AGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFG 259
Query: 753 GRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 893
G P + + +Y + T + W +LP GR HS
Sbjct: 260 GMT----PAGALDTMY-----QYHTEEQHWTLLKFDTLLPPGRLDHS 297
Score = 68.2 bits (165), Expect = 2e-11
Identities = 45/159 (28%), Positives = 76/159 (47%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 377
PR + ++ A+G+++Y FGG G + ++ +H+F+A +L W+ +P T G
Sbjct: 138 PRTFHTSSAAIGNQLYVFGGGERGA--QPVQDTKLHVFDANTLTWS-----QPETLGNP- 189
Query: 378 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
P R+GH V +F+ GG + + L+ D++ KW G P H
Sbjct: 190 --PSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAH 246
Query: 558 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI 674
SA +GK +YIFGG + +++ T WTL+
Sbjct: 247 SAVAMGKHVYIFGGMTPAGAL--DTMYQYHTEEQHWTLL 283
>ref|NP_001167624.1| rab9 effector protein with kelch motifs isoform b [Homo sapiens].
Length = 321
Score = 81.3 bits (199), Expect = 2e-15
Identities = 62/212 (29%), Positives = 85/212 (40%), Gaps = 14/212 (6%)
Frame = +3
Query: 507 WSTPRVAGTVPGARDGHSACVL--------GKTMYIFGGYEQLADCFSNDIHKLDTSTMT 662
W T V G P AR GHS L GK + G + +D+H +D T T
Sbjct: 18 WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRS---FSDVHTMDLETRT 74
Query: 663 WTLICTKGNPARWRDFH-SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 839
WT P R FH S+ +GN +YVFGG P ++ VFD T
Sbjct: 75 WTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDT------KLHVFDANTLT 128
Query: 840 W-----LDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKK 1004
W L PP+P R H +L+I GG +R + DL + W+K
Sbjct: 129 WSQPETLGNPPSP-----RHGHVMVAAGTKLFIHGGLAG--DRFYDDLHCIDISDMKWQK 181
Query: 1005 IEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPS 1100
+ P G P +G + +FGG +P+
Sbjct: 182 LNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPA 213
Score = 79.3 bits (194), Expect = 9e-15
Identities = 61/207 (29%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Frame = +3
Query: 297 DVHIFNAVSLRWTK----LPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEG 464
DVH + + WT PP P T + S+ I + ++++GG G
Sbjct: 64 DVHTMDLETRTWTTPEVTSPPPSPRT-----------FHTSSAAIGNQLYVFGGGE--RG 110
Query: 465 ACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSND 632
A V L+ FD NT WS P G P R GH G ++I GG D F +D
Sbjct: 111 AQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGL--AGDRFYDD 168
Query: 633 IHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRI 812
+H +D S M W + G HSA +G H+Y+FGG P + + +Y
Sbjct: 169 LHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT----PAGALDTMY---- 220
Query: 813 RVFDTRTEAWLDCPPTPVLPEGRRSHS 893
+ T + W +LP GR HS
Sbjct: 221 -QYHTEEQHWTLLKFDTLLPPGRLDHS 246
Score = 68.2 bits (165), Expect = 2e-11
Identities = 45/159 (28%), Positives = 76/159 (47%)
Frame = +3
Query: 198 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 377
PR + ++ A+G+++Y FGG G + ++ +H+F+A +L W+ +P T G
Sbjct: 87 PRTFHTSSAAIGNQLYVFGGGERGA--QPVQDTKLHVFDANTLTWS-----QPETLGNP- 138
Query: 378 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
P R+GH V +F+ GG + + L+ D++ KW G P H
Sbjct: 139 --PSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAH 195
Query: 558 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI 674
SA +GK +YIFGG + +++ T WTL+
Sbjct: 196 SAVAMGKHVYIFGGMTPAGAL--DTMYQYHTEEQHWTLL 232
>ref|NP_997186.1| attractin-like protein 1 precursor [Homo sapiens].
Length = 1379
Score = 80.9 bits (198), Expect = 3e-15
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 13/276 (4%)
Frame = +3
Query: 195 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 368
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 351 GPLQRYGHSLALYQENIFMYGGRIETNDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 406
Query: 369 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 533
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 407 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 462
Query: 534 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 698
+ GH++ + K++Y+ GGY+ L +D++K + +T TWT++ G
Sbjct: 463 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNTKTWTILKESGFA-- 520
Query: 699 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 875
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 521 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 579
Query: 876 GRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNP 983
R HSA NG +YIFGG+++ L +D+ + P
Sbjct: 580 NRFGHSAVVINGSMYIFGGFSSVL---LNDILVYKP 612
>ref|NP_751943.1| kelch domain-containing protein 1 [Homo sapiens].
Length = 406
Score = 75.5 bits (184), Expect = 1e-13
Identities = 72/261 (27%), Positives = 116/261 (44%), Gaps = 27/261 (10%)
Frame = +3
Query: 393 RYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 557
R GH V+ + +++WGG N+ + ++ +D+++ W + G +P + G
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWRMHLMEGELPASMSGS 72
Query: 558 -SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSA 719
AC+ GK +YIFGGY+ +SN ++ ++ T T I K G P RD S
Sbjct: 73 CGACINGK-LYIFGGYDDKG--YSNRLYFVNLRTRDETYIWEKITDFEGQPPTPRDKLSC 129
Query: 720 TMLGNHMYVFGGRA--------DRFGPFHSNNEI-----YCNRIRVFDTRTEAWLDCP-P 857
+ + + FGG D F ++ E + N + +FDT+T+ W
Sbjct: 130 WVYKDRLIYFGGYGCRRHSELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTQTWFQPEIK 189
Query: 858 TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWK-KIEPKGKGPCP 1034
V P+ R +H+ + YIFGG L +DL N ++TW +I G+ P
Sbjct: 190 GGVPPQPRAAHTCAVLGNKGYIFGG--RVLQTRMNDLHYLNLDTWTWSGRITINGESPKH 247
Query: 1035 RR-RQCCCIVGDKIVLFGGTS 1094
R I DK+ L GG S
Sbjct: 248 RSWHTLTPIADDKLFLCGGLS 268
Score = 74.3 bits (181), Expect = 3e-13
Identities = 89/328 (27%), Positives = 135/328 (41%), Gaps = 32/328 (9%)
Frame = +3
Query: 204 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 380
R H AV G+ +Y +GGY S ED E L ++ ++ S W G+
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWR-----MHLMEGE--- 64
Query: 381 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 545
+P G I+ ++++GG +D +G N LY ++ T+ W G P
Sbjct: 65 LPASMSGSCGACINGKLYIFGGYDD-KGYSNRLYFVNLRTRDETYIWEKITDFEGQPPTP 123
Query: 546 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 665
RD S V + FGGY +L DCF ND+H DT T TW
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGCRRHSELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTQTW 183
Query: 666 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW 842
KG P + R H+ +LGN Y+FGGR + N + + T W
Sbjct: 184 FQPEIKGGVPPQPRAAHTCAVLGNKGYIFGGRV---------LQTRMNDLHYLNLDTWTW 234
Query: 843 LD-CPPTPVLPEGRRSHSAFGY-NGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIE-- 1010
P+ R H+ + +L++ GG +A N D W N + WK++
Sbjct: 235 SGRITINGESPKHRSWHTLTPIADDKLFLCGGLSAD-NIPLSDGWIHNVTTNCWKQLTHL 293
Query: 1011 PKGKGPCPRRRQCCCI-VGDKIVLFGGT 1091
PK + PR C+ ++I++FGG+
Sbjct: 294 PKTR---PRLWHTACLGKENEIMVFGGS 318
Score = 58.5 bits (140), Expect = 2e-08
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Frame = +3
Query: 693 ARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYC--NRIRVFDTRTEAWLDCPPTPV 866
A R H A + GN +YV+GG +NE+Y + I +D + W
Sbjct: 10 AEERSGHCAVVDGNFLYVWGGYVS-----IEDNEVYLPNDEIWTYDIDSGLWRMHLMEGE 64
Query: 867 LPEGRRSHSAFGYNGELYIFGGYNAR--LNRHFHDLWKFNPVSFTWKKI-EPKGKGPCPR 1037
LP NG+LYIFGGY+ + NR + + ++ W+KI + +G+ P PR
Sbjct: 65 LPASMSGSCGACINGKLYIFGGYDDKGYSNRLYFVNLRTRDETYIWEKITDFEGQPPTPR 124
Query: 1038 RRQCCCIVGDKIVLFGG 1088
+ C + D+++ FGG
Sbjct: 125 DKLSCWVYKDRLIYFGG 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,020,755
Number of extensions: 2433560
Number of successful extensions: 13177
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 12810
Number of HSP's successfully gapped: 79
Length of query: 535
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,770,016
Effective search space: 6321566848
Effective search space used: 6321566848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012852
(1606 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 666 0.0
Sscrofa_ChrX 62 1e-06
>Sscrofa_Chr07
|| Length = 134764511
Score = 666 bits (336), Expect = 0.0
Identities = 360/366 (98%), Gaps = 3/366 (0%)
Strand = Plus / Plus
Query: 1244 caggtgggagctgaatgccatgaccaccaacagcaatatcagtcgccccatcgtctcctc 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43534904 caggtgggagctgaatgccatgaccaccaacagcaatatcagtcgccccatcgtctcctc 43534963
Query: 1304 ccatgggtagaggaagtttctgctgcctcctttcctgagcctgcgttgtcttcactgccc 1363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 43534964 ccatgggtagaggaagtttctgctgcctcccttcctgagcctgcgttgtcttcactgccc 43535023
Query: 1364 ctgcccatctctcacccgcctgccccc--ttggaccctggactcgtatacctccacatgg 1421
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 43535024 ctgcccatctctcacccgcctgcccccctttggaccctggactcgtatacctccacatgg 43535083
Query: 1422 agttggactagaggtgttttctgtgctgtgaactcagtggggagctgtagggaggagggc 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43535084 agttggactagaggtgttttctgtgctgtgaactcagtggggagctgtagggaggagggc 43535143
Query: 1482 taggtcccctcctccttgggccgagggccccttccccttggtgctctttcccatccacct 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43535144 taggtcccctcctccttgggccgagggccccttccccttggtgctctttcccatccacct 43535203
Query: 1542 ccct-caactgctcctgggcctctgctctgccctggncagccatgctctgctgggaaatg 1600
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 43535204 ccctccaactgctcctgggcctctgctctgccctggccagccatgctctgctgggaagtg 43535263
Query: 1601 aaggga 1606
||||||
Sbjct: 43535264 aaggga 43535269
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 682 agggcaaccccgcacgctggagggacttccactcggccaccatgctgggcaatcacatgt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532794 agggcaaccccgcacgctggagggacttccactcggccaccatgctgggcaatcacatgt 43532853
Query: 742 atgtctttgggggccgtgccgaccgtttcgggccattccactccaacaatgagatttact 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532854 atgtctttgggggccgtgccgaccgtttcgggccattccactccaacaatgagatttact 43532913
Query: 802 gcaaccgcatccgcgtctttgacacgaggaccgaggcctggctggactgtccacccaccc 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532914 gcaaccgcatccgcgtctttgacacgaggaccgaggcctggctggactgtccacccaccc 43532973
Query: 862 cggtgctgcctgaggggcgccggagccactcagcct 897
||||||||||||||||||||||||||||||||||||
Sbjct: 43532974 cggtgctgcctgaggggcgccggagccactcagcct 43533009
Score = 383 bits (193), Expect = e-103
Identities = 207/214 (96%)
Strand = Plus / Plus
Query: 105 ggtagcagaggcagcaggccgtgccnnnnnnncatgtggctgtaaccagtggcccagggg 164
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 43531477 ggtagcagaggcagcaggccgtgccgggggggcatgtggctgtaaccagtggcccagggg 43531536
Query: 165 atgttacgctggacggtgcacctggagggcgggccccgcagggtgaaccatgctgcagtg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531537 atgttacgctggacggtgcacctggagggcgggccccgcagggtgaaccatgctgcagtg 43531596
Query: 225 gccgtcgggcacagggtgtactccttcgggggttactgctccggcgaggactatgagacg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531597 gccgtcgggcacagggtgtactccttcgggggttactgctccggcgaggactatgagacg 43531656
Query: 285 ctgcgtcagattgatgtacacattttcaatgcag 318
||||||||||||||||||||||||||||||||||
Sbjct: 43531657 ctgcgtcagattgatgtacacattttcaatgcag 43531690
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 316 cagtgtccttgcgttggacaaagctgcccccggtgaggcccgccacccgcgggcaggctc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531867 cagtgtccttgcgttggacaaagctgcccccggtgaggcccgccacccgcgggcaggctc 43531926
Query: 376 ctgtggtaccctacatgcggtacggacactccaccgtcctcatcgacgacacagtcttcc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531927 ctgtggtaccctacatgcggtacggacactccaccgtcctcatcgacgacacagtcttcc 43531986
Query: 436 tttggggtgggcggaatgacaccgaaggggcctgcaatgtgctttatgcttttgatgtca 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531987 tttggggtgggcggaatgacaccgaaggggcctgcaatgtgctttatgcttttgatgtca 43532046
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 496 atactcacaaatggtccacaccccgagtagcaggaacagttcctggggcccgggacggac 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532202 atactcacaaatggtccacaccccgagtagcaggaacagttcctggggcccgggacggac 43532261
Query: 556 attcggcttgtgtcctgggcaagaccatgtatattttcgggggctacgagcagctgg 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532262 attcggcttgtgtcctgggcaagaccatgtatattttcgggggctacgagcagctgg 43532318
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 984 gtgtcgtttacctggaagaagattgaaccgaaggggaaggggccgtgtccccgccggcgc 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43533289 gtgtcgtttacctggaagaagattgaaccgaaggggaaggggccgtgtccccgccggcgc 43533348
Query: 1044 cagtgctgctgtattgttggtgacaagattgttctctttgggggtaccag 1093
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43533349 cagtgctgctgtattgttggtgacaagattgttctctttgggggtaccag 43533398
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 898 ttggctacaatggggagctgtacatttttggtggctataatgcaaggctgaatcggcact 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43533089 ttggctacaatggggagctgtacatttttggtggctataatgcaaggctgaatcggcact 43533148
Query: 958 tccatgatctctggaagtttaaccctg 984
|||||||||||||||||||||||||||
Sbjct: 43533149 tccatgatctctggaagtttaaccctg 43533175
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1168 gccctagtctgaagactctgtgcaaactggctgtgattcagtataacctggaccagtcct 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43533716 gccctagtctgaagactctgtgcaaactggctgtgattcagtataacctggaccagtcct 43533775
Query: 1228 gtttgccccatgacatcaggt 1248
|||||||||||||||||||||
Sbjct: 43533776 gtttgccccatgacatcaggt 43533796
Score = 155 bits (78), Expect = 9e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1091 cagtccgtctcctgaggaaggcctgggagatgaatttgaccttatagatcattctgactt 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43533514 cagtccgtctcctgaggaaggcctgggagatgaatttgaccttatagatcattctgactt 43533573
Query: 1151 acacattttggactttag 1168
||||||||||||||||||
Sbjct: 43533574 acacattttggactttag 43533591
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 611 ggcggactgcttttccaatgacattcacaagctggataccagcaccatgacatggaccct 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532496 ggcggactgcttttccaatgacattcacaagctggataccagcaccatgacatggaccct 43532555
Query: 671 gatctgtacaaagg 684
||||||||||||||
Sbjct: 43532556 gatctgtacaaagg 43532569
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 tctcgttggagatccagtcggcagttggcgggcaacgggttcaaagctgcaggcagcgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43529250 tctcgttggagatccagtcggcagttggcgggcaacgggttcaaagctgcaggcagcgcg 43529309
Query: 61 agga 64
||||
Sbjct: 43529310 agga 43529313
>Sscrofa_ChrX
|| Length = 144288218
Score = 61.9 bits (31), Expect = 1e-06
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 1546 caactgctcctgggcctctgctctgcc-ctggncagccatgctctgctgggaaatgaagg 1604
||||| ||||||||||||||||||||| | || |||||| ||||||||||| | ||||||
Sbjct: 43669399 caacttctcctgggcctctgctctgcctcaggccagccaggctctgctggggagtgaagg 43669340
Query: 1605 ga 1606
||
Sbjct: 43669339 ga 43669338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,282,927
Number of extensions: 260
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 12
Length of query: 1606
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1584
Effective length of database: 2,808,408,574
Effective search space: 4448519181216
Effective search space used: 4448519181216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)