Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012853
(1083 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865315.1| PREDICTED: similar to kelch domain containing 3... 569 e-162
Alignment gi|XP_865298.1| PREDICTED: similar to kelch domain containing 3... 569 e-162
Alignment gi|XP_865234.1| PREDICTED: similar to kelch domain containing 3... 569 e-162
Alignment gi|XP_852194.1| PREDICTED: similar to kelch domain containing 3... 569 e-162
Alignment gi|XP_532142.2| PREDICTED: similar to kelch domain containing 3... 504 e-143
Alignment gi|XP_865249.1| PREDICTED: similar to kelch domain containing 3... 345 3e-95
Alignment gi|XP_865265.1| PREDICTED: similar to testis intracellular medi... 257 1e-72
Alignment gi|XP_867453.1| PREDICTED: similar to Host cell factor (HCF) (H... 86 6e-17
Alignment gi|XP_867443.1| PREDICTED: similar to Host cell factor (HCF) (H... 86 6e-17
Alignment gi|XP_549366.2| PREDICTED: similar to Host cell factor (HCF) (H... 86 6e-17
>ref|XP_865315.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 8
[Canis familiaris].
Length = 311
Score = 569 bits (1467), Expect = e-162
Identities = 262/265 (98%), Positives = 264/265 (99%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKTMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLI-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|XP_865298.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 7
[Canis familiaris].
Length = 371
Score = 569 bits (1467), Expect = e-162
Identities = 262/265 (98%), Positives = 264/265 (99%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKTMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLI-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|XP_865234.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 4
[Canis familiaris].
Length = 382
Score = 569 bits (1467), Expect = e-162
Identities = 262/265 (98%), Positives = 264/265 (99%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKTMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLI-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|XP_852194.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 3
[Canis familiaris].
Length = 550
Score = 569 bits (1467), Expect = e-162
Identities = 262/265 (98%), Positives = 264/265 (99%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKTMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLI-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|XP_532142.2| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 1
[Canis familiaris].
Length = 358
Score = 504 bits (1297), Expect = e-143
Identities = 238/265 (89%), Positives = 240/265 (90%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAIRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGKTMYIFGGYEQL GNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQL------------------------GNPARWR 156
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 157 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 216
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 217 SHSAFGYNGELYIFGGYNARLNRHF 241
Score = 60.1 bits (144), Expect = 4e-09
Identities = 50/192 (26%), Positives = 72/192 (37%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E L RW
Sbjct: 128 RDGHSACVLGKTMYIFGGY------EQLGN---------PARW----------------- 155
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 156 ---RDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 212
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 213 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 272
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 273 CIVGDKIVLFGG 284
>ref|XP_865249.1| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 5
[Canis familiaris].
Length = 323
Score = 345 bits (886), Expect = 3e-95
Identities = 161/193 (83%), Positives = 172/193 (89%), Gaps = 4/193 (2%)
Frame = +2
Query: 443 RYGHSTVLIDDTVFLWGGR---NDTEGACNV-LYAFDVNTHKWSTPRVAGTVPGARDGHS 610
R H+ V + V+ +GG D E + ++ F+ +THKWSTPRV+GTVPGARDGHS
Sbjct: 14 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNADTHKWSTPRVSGTVPGARDGHS 73
Query: 611 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHM 790
ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLG+HM
Sbjct: 74 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGSHM 133
Query: 791 YVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELY 970
YVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELY
Sbjct: 134 YVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELY 193
Query: 971 IFGGYNARLNRHF 1009
IFGGYNARLNRHF
Sbjct: 194 IFGGYNARLNRHF 206
Score = 166 bits (421), Expect = 3e-41
Identities = 103/264 (39%), Positives = 135/264 (51%), Gaps = 8/264 (3%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNA + +W+
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNADTHKWS--- 57
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRND-TEGACNVLYAFDVNTHKWSTPR 571
P G VP R GHS ++ T++++GG + N ++ D +T W+
Sbjct: 58 --TPRVSG---TVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 112
Query: 572 VAGTVPGARDGHSACVLGKTMYIFGG-------YEQLADCFSNDIHKLDTSTMTWTLICT 730
G RD HSA +LG MY+FGG + + + N I DT T W
Sbjct: 113 TKGNPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 172
Query: 731 KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPT 910
R HSA +Y+FGG +++ + + + F+ + W P
Sbjct: 173 TPVLPEGRRSHSAFGYNGELYIFGG-------YNARLNRHFHDLWKFNPVSFTWKKIEPK 225
Query: 911 PVLPEGRRSHSAFGYNGELYIFGG 982
P RR ++ +FGG
Sbjct: 226 GKGPCPRRRQCCCIVGDKIVLFGG 249
>ref|XP_865265.1| PREDICTED: similar to testis intracellular mediator protein isoform 6
[Canis familiaris].
Length = 266
Score = 257 bits (656), Expect(2) = 1e-72
Identities = 115/116 (99%), Positives = 116/116 (100%)
Frame = +2
Query: 662 ADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNN 841
ADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLG+HMYVFGGRADRFGPFHSNN
Sbjct: 34 ADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNN 93
Query: 842 EIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHF 1009
EIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 94 EIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHF 149
Score = 35.8 bits (81), Expect(2) = 1e-72
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 486 FGVGGMTPKGPAMCFMLLMS 545
FG GG TPK PAMC+M LMS
Sbjct: 14 FGAGGTTPKEPAMCYMPLMS 33
Score = 62.8 bits (151), Expect = 6e-10
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%)
Frame = +2
Query: 347 DVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGA--- 517
D+H + ++ WT + T+G R HS ++ ++++GGR D G
Sbjct: 40 DIHKLDTSTMTWTLI-----CTKGNPA---RWRDFHSATMLGSHMYVFGGRADRFGPFHS 91
Query: 518 -----CNVLYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSND 682
CN + FD T W +P R HSA +YIFGGY + +D
Sbjct: 92 NNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHD 151
Query: 683 IHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGG 805
+ K + + TW I KG R ++G+ + +FGG
Sbjct: 152 LWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGG 192
Score = 50.4 bits (119), Expect = 3e-06
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 7/161 (4%)
Frame = +2
Query: 521 NVLYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGG-------YEQLADCFSN 679
N ++ D +T W+ G RD HSA +LG MY+FGG + + + N
Sbjct: 39 NDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCN 98
Query: 680 DIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNR 859
I DT T W R HSA +Y+FGG +++ + +
Sbjct: 99 RIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGG-------YNARLNRHFHD 151
Query: 860 IRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGG 982
+ F+ + W P P RR ++ +FGG
Sbjct: 152 LWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGG 192
Score = 49.3 bits (116), Expect = 6e-06
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 17/185 (9%)
Frame = +2
Query: 218 LRWT-VHLEGGPRRVN--HAAVAVGHRVYSFGGYCSG-EDYETLRQI---DVHIFNAVSL 376
+ WT + +G P R H+A +G +Y FGG + + +I + +F+ +
Sbjct: 49 MTWTLICTKGNPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTE 108
Query: 377 RWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRN-DTEGACNVLYAFDVNTH 553
W PP PV+P R HS + ++++GG N + L+ F+ +
Sbjct: 109 AWLDCPP--------TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSF 160
Query: 554 KWSTPRVAGTVPGARDGHSACVLGKTMYIFGG-----YEQLADCFS----NDIHKLDTST 706
W G P R C++G + +FGG E L D F +D+H LD S
Sbjct: 161 TWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDDFDLIDHSDLHILDFSP 220
Query: 707 MTWTL 721
TL
Sbjct: 221 SLKTL 225
>ref|XP_867453.1| PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1 factor)
(VP16 accessory protein) (VCAF) (CFF) isoform 3 [Canis
familiaris].
Length = 2053
Score = 85.9 bits (211), Expect = 6e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIETLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.0 bits (97), Expect(2) = 9e-06
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + +P AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 9e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
>ref|XP_867443.1| PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1 factor)
(VP16 accessory protein) (VCAF) (CFF) isoform 2 [Canis
familiaris].
Length = 2039
Score = 85.9 bits (211), Expect = 6e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIETLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.0 bits (97), Expect(2) = 9e-06
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + +P AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 9e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
>ref|XP_549366.2| PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1 factor)
(VP16 accessory protein) (VCAF) (CFF) isoform 1 [Canis
familiaris].
Length = 2098
Score = 85.9 bits (211), Expect = 6e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIETLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.0 bits (97), Expect(2) = 9e-06
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + +P AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 9e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,857,042
Number of extensions: 1675602
Number of successful extensions: 8474
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 8095
Number of HSP's successfully gapped: 83
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012853
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012853
(1083 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014966.1| kelch domain-containing protein 3 [Bos tauru... 570 e-162
Alignment gi|XP_002707954.1| PREDICTED: Host cell factor (predicted)-like... 87 3e-17
Alignment gi|NP_001030476.1| rab9 effector protein with kelch motifs [Bos... 86 4e-17
Alignment gi|XP_590515.2| PREDICTED: Host cell factor (predicted)-like [B... 86 6e-17
Alignment gi|NP_001014948.1| kelch domain-containing protein 2 [Bos tauru... 83 5e-16
Alignment gi|NP_001179877.1| host cell factor 2 [Bos taurus]. 80 2e-15
Alignment gi|XP_002687688.1| PREDICTED: host cell factor C2 [Bos taurus]. 80 2e-15
Alignment gi|XP_002707834.1| PREDICTED: attractin-like 1-like [Bos taurus]. 79 9e-15
Alignment gi|XP_001787595.1| PREDICTED: attractin-like 1 [Bos taurus]. 79 9e-15
Alignment gi|NP_001179040.1| leucine-zipper-like transcriptional regulato... 75 1e-13
>ref|NP_001014966.1| kelch domain-containing protein 3 [Bos taurus].
Length = 382
Score = 570 bits (1468), Expect = e-162
Identities = 262/265 (98%), Positives = 264/265 (99%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAARGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 SGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKTMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLI-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|XP_002707954.1| PREDICTED: Host cell factor (predicted)-like [Bos taurus].
Length = 1992
Score = 86.7 bits (213), Expect = 3e-17
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Frame = +2
Query: 389 LPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTP 568
L P G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P
Sbjct: 15 LQPRXKGVVGWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIP 72
Query: 569 RVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----G 736
V G +P + G + +FGG + +SND+++L S W + K G
Sbjct: 73 AVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNG 131
Query: 737 NPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCP 904
P R HS +++GN Y+FGG A+ +N Y N + + + R AW D P
Sbjct: 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIP 190
Query: 905 PT-PVLPEGRRSHSAFGY------NGELYIFGG 982
T VLP R SH+A Y +L I+GG
Sbjct: 191 ITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 57.8 bits (138), Expect = 2e-08
Identities = 72/287 (25%), Positives = 118/287 (41%), Gaps = 25/287 (8%)
Frame = +2
Query: 200 PVAQGMLRWTVHLEGGPR-RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL 376
P +G++ W+ + PR R H AVA+ + FGG G E +H++N +
Sbjct: 17 PRXKGVVGWSGPV---PRPRHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATN 67
Query: 377 RWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTH 553
+W PA RG P YG + D T + ++GG + N LY +
Sbjct: 68 QW-----FIPAVRGDIPP-GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRW 118
Query: 554 KWS-----TPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD 697
+W TP+ G P R GHS ++G Y+FGG ++ + ND++ L+
Sbjct: 119 EWKRLKAKTPK-NGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILE 177
Query: 698 ----TSTMTWTLICTKGNPARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNE 844
+ + W + T G R+ H+A + + + ++GG + R G +
Sbjct: 178 LRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT--- 234
Query: 845 IYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY 985
D T W + V P R HSA ++Y+FGG+
Sbjct: 235 --------LDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.0 bits (97), Expect(2) = 8e-06
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + +P AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 8e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
>ref|NP_001030476.1| rab9 effector protein with kelch motifs [Bos taurus].
Length = 372
Score = 86.3 bits (212), Expect = 4e-17
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 6/186 (3%)
Frame = +2
Query: 443 RYGHSTVLIDDT---VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH-S 610
RY H++ + T ++++GG D G N L + +T W+TP V G P R H S
Sbjct: 86 RYEHTSFIPSCTPHSIWVFGGA-DQSGNRNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTS 144
Query: 611 ACVLGKTMYIFGGYEQLADCFSN-DIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNH 787
+ +G +Y+FGG E+ A + +H D +T+TW+ T G P R H G
Sbjct: 145 SAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTK 204
Query: 788 MYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGE 964
+++ GG A D F ++++C D W PT P G +HSA
Sbjct: 205 LFIHGGLAGDNF-----YDDLHC-----IDISDMKWQKLRPTGAAPTGCAAHSAVAVGKH 254
Query: 965 LYIFGG 982
LY+FGG
Sbjct: 255 LYVFGG 260
Score = 77.4 bits (189), Expect = 2e-14
Identities = 67/228 (29%), Positives = 92/228 (40%), Gaps = 8/228 (3%)
Frame = +2
Query: 284 HRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKL----PPVRPATRGQAPVVPYMRYG 451
H ++ FGG + L+ + N + WT PP P T +
Sbjct: 99 HSIWVFGGADQSGNRNCLQ-----VLNPDTRTWTTPEVTGPPPSPRT-----------FH 142
Query: 452 HSTVLIDDTVFLWGGRNDTEGACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACV 619
S+ I D ++++GG GA V L+ FD NT WS P G P R GH
Sbjct: 143 TSSAAIGDQLYVFGGGE--RGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVA 200
Query: 620 LGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVF 799
G ++I GG D F +D+H +D S M W + G HSA +G H+YVF
Sbjct: 201 AGTKLFIHGGLA--GDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVF 258
Query: 800 GGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 943
GG P + N +Y I + + PPT GR HS
Sbjct: 259 GGMT----PTGALNTMYQYHIEKQHWTLLKFENSPPT-----GRLDHS 297
Score = 75.9 bits (185), Expect = 6e-14
Identities = 49/177 (27%), Positives = 85/177 (48%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 427
PR + ++ A+G ++Y FGG G + ++ + +H+F+A +L W+ +P T G+
Sbjct: 138 PRTFHTSSAAIGDQLYVFGGGERGA--QPVQDVQLHVFDANTLTWS-----QPETHGKP- 189
Query: 428 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 607
P R+GH V +F+ GG + + L+ D++ KW R G P H
Sbjct: 190 --PSPRHGHVMVAAGTKLFIHGGLAG-DNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAH 246
Query: 608 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATML 778
SA +GK +Y+FGG N +++ WTL+ + +P R HS ++
Sbjct: 247 SAVAVGKHLYVFGGMTPTGAL--NTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCII 301
>ref|XP_590515.2| PREDICTED: Host cell factor (predicted)-like [Bos taurus].
Length = 1992
Score = 85.9 bits (211), Expect = 6e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIETLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.0 bits (97), Expect(2) = 8e-06
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + +P AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 8e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
>ref|NP_001014948.1| kelch domain-containing protein 2 [Bos taurus].
Length = 406
Score = 82.8 bits (203), Expect = 5e-16
Identities = 72/275 (26%), Positives = 113/275 (41%), Gaps = 31/275 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGE-----DYETLRQIDVHIFNAVSLRWTKLPPVRPATRG 418
R H AV+ G ++ +GGY S + D+ R+ ++ I+N + RW K+ T G
Sbjct: 32 RSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPRE-ELWIYNMETGRWKKIN-----TEG 85
Query: 419 QAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHK----WSTPRVAGTV 586
P P M G V +D ++L+GG + + G N Y D + W G
Sbjct: 86 DVP--PSMS-GSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLHWERIDCQGVP 141
Query: 587 PGARDGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTS 703
P ++D V + FGGY L + +++ +H LDT
Sbjct: 142 PSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTE 201
Query: 704 TMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRT 883
T W+ T G P R H+ +GN +VFGGR + N + + T
Sbjct: 202 TFIWSQPITTGKPPSPRAAHACATVGNKGFVFGGR---------YRDARMNDLHYLNLDT 252
Query: 884 EAWLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGY 985
W + P + P GR HS + + L++FGG+
Sbjct: 253 WEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGGF 287
Score = 62.8 bits (151), Expect = 5e-10
Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 30/250 (12%)
Frame = +2
Query: 374 LRWTKLP-PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG--RNDTEGACNV------ 526
LR +LP P P R GH V +F+WGG N G +
Sbjct: 8 LREDELPGPAYEGYESAELACPAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREE 67
Query: 527 LYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST 706
L+ +++ T +W G VP + G A + + +Y+FGG+ + +N + LD+ +
Sbjct: 68 LWIYNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRS 125
Query: 707 ----MTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN- 856
+ W I +G P +D + N + FGG D+ G F + + N
Sbjct: 126 TDRVLHWERIDCQGVPPSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNS 185
Query: 857 --------RIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLN-R 1003
+ + DT T W T P R +H+ + ++FGG +AR+N
Sbjct: 186 SHPRGWNDHVHILDTETFIWSQPITTGKPPSPRAAHACATVGNKGFVFGGRYRDARMNDL 245
Query: 1004 HFMISEV*PW 1033
H++ + W
Sbjct: 246 HYLNLDTWEW 255
>ref|NP_001179877.1| host cell factor 2 [Bos taurus].
Length = 792
Score = 80.5 bits (197), Expect = 2e-15
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Frame = +2
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 610
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 611 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI----CTKGNPARWRDFHSATML 778
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 779 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 946
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 947 FGY------NGELYIFGGY-NARLN 1000
Y + ++Y+FGG ARL+
Sbjct: 196 VIYCKRDSGSPKMYVFGGMCGARLD 220
Score = 68.6 bits (166), Expect = 9e-12
Identities = 73/285 (25%), Positives = 111/285 (38%), Gaps = 25/285 (8%)
Frame = +2
Query: 206 AQGMLRWT-VHLEGGP---RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVS 373
A +L W V GP R H AVA+ + FGG G E +H++N V+
Sbjct: 3 APSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADE------LHVYNTVT 56
Query: 374 LRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH 553
+W PA RG +P H V + ++GG + N LY +
Sbjct: 57 NQW-----FLPAVRGD---IPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRW 108
Query: 554 KWST----PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD- 697
W P +G P R GHS + G Y+FGG ++ + ND ++L+
Sbjct: 109 LWKKVKPHPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELEL 168
Query: 698 ---TSTMTWTLICTKGNPARWRDFHSATMLGNH------MYVFGGRADRFGPFHSNNEIY 850
+ + W++ TKG R+ H+A + MYVFGG
Sbjct: 169 QHGSGVVGWSIPVTKGIVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGA----------R 218
Query: 851 CNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ + D T +W +P R H+A ++YIFGG+
Sbjct: 219 LDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGW 263
Score = 65.5 bits (158), Expect = 8e-11
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 421
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 422 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 584 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 727
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 728 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 889
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 890 WLDCPPTP 913
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_002687688.1| PREDICTED: host cell factor C2 [Bos taurus].
Length = 792
Score = 80.5 bits (197), Expect = 2e-15
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Frame = +2
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 610
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 611 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI----CTKGNPARWRDFHSATML 778
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 779 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 946
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 947 FGY------NGELYIFGGY-NARLN 1000
Y + ++Y+FGG ARL+
Sbjct: 196 VIYCKRDSGSPKMYVFGGMCGARLD 220
Score = 68.6 bits (166), Expect = 9e-12
Identities = 73/285 (25%), Positives = 111/285 (38%), Gaps = 25/285 (8%)
Frame = +2
Query: 206 AQGMLRWT-VHLEGGP---RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVS 373
A +L W V GP R H AVA+ + FGG G E +H++N V+
Sbjct: 3 APSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADE------LHVYNTVT 56
Query: 374 LRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH 553
+W PA RG +P H V + ++GG + N LY +
Sbjct: 57 NQW-----FLPAVRGD---IPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRW 108
Query: 554 KWST----PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD- 697
W P +G P R GHS + G Y+FGG ++ + ND ++L+
Sbjct: 109 LWKKVKPHPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELEL 168
Query: 698 ---TSTMTWTLICTKGNPARWRDFHSATMLGNH------MYVFGGRADRFGPFHSNNEIY 850
+ + W++ TKG R+ H+A + MYVFGG
Sbjct: 169 QHGSGVVGWSIPVTKGIVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGA----------R 218
Query: 851 CNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ + D T +W +P R H+A ++YIFGG+
Sbjct: 219 LDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGW 263
Score = 65.5 bits (158), Expect = 8e-11
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 421
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 422 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 584 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 727
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 728 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 889
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 890 WLDCPPTP 913
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_002707834.1| PREDICTED: attractin-like 1-like [Bos taurus].
Length = 1438
Score = 78.6 bits (192), Expect = 9e-15
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 13/270 (4%)
Frame = +2
Query: 245 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 418
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 408 GPLQRYGHSLALYQENIFMYGGRIETSDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 463
Query: 419 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 464 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 519
Query: 584 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 748
+ GH++ + K++Y+ GGY+ L +D++K + + TWT++ G
Sbjct: 520 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNPKTWTILKESGFA-- 577
Query: 749 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 925
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 578 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 636
Query: 926 GRRSHSAFGYNGELYIFGGYNARLNRHFMI 1015
R HSA NG +YIFGG+++ L ++
Sbjct: 637 NRFGHSAVVINGSMYIFGGFSSVLLNDILV 666
>ref|XP_001787595.1| PREDICTED: attractin-like 1 [Bos taurus].
Length = 1317
Score = 78.6 bits (192), Expect = 9e-15
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 13/270 (4%)
Frame = +2
Query: 245 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 418
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 288 GPLQRYGHSLALYQENIFMYGGRIETSDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 343
Query: 419 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 344 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 399
Query: 584 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 748
+ GH++ + K++Y+ GGY+ L +D++K + + TWT++ G
Sbjct: 400 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNPKTWTILKESGFA-- 457
Query: 749 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 925
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 458 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 516
Query: 926 GRRSHSAFGYNGELYIFGGYNARLNRHFMI 1015
R HSA NG +YIFGG+++ L ++
Sbjct: 517 NRFGHSAVVINGSMYIFGGFSSVLLNDILV 546
>ref|NP_001179040.1| leucine-zipper-like transcriptional regulator 1 [Bos taurus].
Length = 840
Score = 74.7 bits (182), Expect = 1e-13
Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 16/262 (6%)
Frame = +2
Query: 245 GPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQA 424
G RR H VA +Y FGG ++ +T+ D+ F+ W R T G
Sbjct: 65 GARRSKHTVVAYKDAIYVFGG----DNGKTMLN-DLLRFDVKDCSWC-----RAFTTGTP 114
Query: 425 PVVPYMRYGHSTVLIDDTVFLWGG------RNDTEGACNVLYAFDVNTHKWSTPRVAGTV 586
P RY HS V+ ++F++GG N N L+ + T +W+ ++ G +
Sbjct: 115 PAP---RYHHSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRL 171
Query: 587 PGARDGHSACVLGKTMYIFGGYE---QLADCFSNDIHKLDTSTMTWTLICTKGN-PARWR 754
P AR H A V ++IF GY+ +L D ++ I D W + G P
Sbjct: 172 PVARSAHGATVYSDKLWIFAGYDGNARLNDMWT--IGLQDRELTCWEEVAQSGEIPPSCC 229
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP------TPV 916
+F A + + M+VF G++ G +NN + F+ + + W P +P
Sbjct: 230 NF-PAAVCRDRMFVFSGQS---GAKITNN------LFQFEFKDQTWTRIPTEHLLRGSPP 279
Query: 917 LPEGRRSHSAFGYNGELYIFGG 982
P+ R H+ ++ LY+FGG
Sbjct: 280 PPQRRYGHTMVAFDRHLYVFGG 301
Score = 70.1 bits (170), Expect = 3e-12
Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Frame = +2
Query: 551 HKWST-PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 727
H+W P V R H+ +Y+FGG ND+ + D +W
Sbjct: 52 HRWRRLPPCDEFVGARRSKHTVVAYKDAIYVFGGDN--GKTMLNDLLRFDVKDCSWCRAF 109
Query: 728 TKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR--TEAWLDC 901
T G P R HSA + G+ M+VFGG G +SN+ + N+ +F+ + T W +
Sbjct: 110 TTGTPPAPRYHHSAVVYGSSMFVFGGYT---GDIYSNSNLK-NKNDLFEYKFATGQWTEW 165
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY--NARLN 1000
LP R +H A Y+ +L+IF GY NARLN
Sbjct: 166 KIEGRLPVARSAHGATVYSDKLWIFAGYDGNARLN 200
Score = 55.1 bits (131), Expect = 1e-07
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 4/193 (2%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 427
P N A R++ F G + L Q F WT++P RG P
Sbjct: 226 PSCCNFPAAVCRDRMFVFSGQSGAKITNNLFQ-----FEFKDQTWTRIP-TEHLLRGSPP 279
Query: 428 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWST--PRVAGTVPGARD 601
P RYGH+ V D ++++GG D N L+ +DV+ W P V GA
Sbjct: 280 P-PQRRYGHTMVAFDRHLYVFGGAADNT-LPNELHCYDVDFQTWEVIQPSSDSEVGGAEM 337
Query: 602 GHSACVLGKTMYIFGGYEQLADC-FSNDIHKLD-TSTMTWTLICTKGNPARWRDFHSATM 775
A + G E+ A C S D+ LD ST + R FH+A +
Sbjct: 338 PERASASEEVP--APGSEERAGCKKSRDVFGLDFGSTTSRQPSLPASELPSGRLFHAAAV 395
Query: 776 LGNHMYVFGGRAD 814
+ + MY+FGG D
Sbjct: 396 ISDAMYIFGGTVD 408
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,981,436
Number of extensions: 1649020
Number of successful extensions: 8402
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 8088
Number of HSP's successfully gapped: 71
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012853
(1083 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098784.1| kelch domain-containing protein 3 [Sus scrof... 575 e-164
Alignment gi|XP_003135533.1| PREDICTED: host cell factor 1 [Sus scrofa]. 86 4e-17
Alignment gi|XP_001929462.3| PREDICTED: attractin-like protein 1 [Sus scr... 81 1e-15
Alignment gi|XP_003126692.1| PREDICTED: host cell factor 2 [Sus scrofa]. 80 2e-15
Alignment gi|XP_003133045.1| PREDICTED: leucine-zipper-like transcription... 74 1e-13
Alignment gi|XP_003360845.1| PREDICTED: kelch domain-containing protein 1... 74 1e-13
Alignment gi|XP_003121855.1| PREDICTED: kelch domain-containing protein 1... 71 1e-12
Alignment gi|XP_001927324.3| PREDICTED: attractin, partial [Sus scrofa]. 67 1e-11
Alignment gi|XP_001925243.3| PREDICTED: kelch domain-containing protein 2... 64 1e-10
Alignment gi|XP_003127214.2| PREDICTED: multiple epidermal growth factor-... 63 3e-10
>ref|NP_001098784.1| kelch domain-containing protein 3 [Sus scrofa].
Length = 410
Score = 575 bits (1481), Expect = e-164
Identities = 265/265 (100%), Positives = 265/265 (100%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR
Sbjct: 121 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 75.1 bits (183), Expect = 6e-14
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKTMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLI-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ + ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|XP_003135533.1| PREDICTED: host cell factor 1 [Sus scrofa].
Length = 2029
Score = 85.9 bits (211), Expect = 4e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 80.5 bits (197), Expect = 2e-15
Identities = 77/264 (29%), Positives = 104/264 (39%), Gaps = 27/264 (10%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW----LDCPPT 910
HSAT +GN MYVFGG D H N + + T AW +D
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 911 PVLPEGRRSHSAFGYNGELYIFGG 982
V P R H A N LYI+ G
Sbjct: 317 NV-PRARAGHCAVAINSRLYIWSG 339
Score = 56.2 bits (134), Expect = 3e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIETLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.7 bits (99), Expect(2) = 3e-06
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + VP AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNVPRARAGHCAVAINSRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 3e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
>ref|XP_001929462.3| PREDICTED: attractin-like protein 1 [Sus scrofa].
Length = 838
Score = 80.9 bits (198), Expect = 1e-15
Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 13/270 (4%)
Frame = +2
Query: 245 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 418
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 352 GPLQRYGHSLALYQENIFMYGGRIETSDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 407
Query: 419 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 408 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 463
Query: 584 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 748
+ GH++ + K++Y+ GGY+ L +D++K + +T TWT++ G
Sbjct: 464 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNTKTWTILKESGFA-- 521
Query: 749 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 925
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 522 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 580
Query: 926 GRRSHSAFGYNGELYIFGGYNARLNRHFMI 1015
R HSA NG +YIFGG+++ L ++
Sbjct: 581 NRFGHSAVVINGSMYIFGGFSSVLLNDILV 610
>ref|XP_003126692.1| PREDICTED: host cell factor 2 [Sus scrofa].
Length = 792
Score = 80.5 bits (197), Expect = 2e-15
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Frame = +2
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 610
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 611 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI----CTKGNPARWRDFHSATML 778
G + +FGG + +SN++++L S W + + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWRKVKPHPPSSGLPPCPRLGHSFSLY 135
Query: 779 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 946
GN Y+FGG A+ ++N Y N + + W ++P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTA 195
Query: 947 FGY------NGELYIFGGY-NARLN 1000
Y + ++Y+FGG ARL+
Sbjct: 196 VIYCRRDSGSPKMYVFGGMCGARLD 220
Score = 68.2 bits (165), Expect = 8e-12
Identities = 73/285 (25%), Positives = 111/285 (38%), Gaps = 25/285 (8%)
Frame = +2
Query: 206 AQGMLRWT-VHLEGGP---RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVS 373
A +L W V GP R H AVA+ + FGG G E +H++N V+
Sbjct: 3 APSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADE------LHVYNTVT 56
Query: 374 LRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH 553
+W PA RG +P H V + ++GG + N LY +
Sbjct: 57 NQW-----FLPAVRGD---IPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRW 108
Query: 554 KWST----PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD- 697
W P +G P R GHS + G Y+FGG ++ + ND ++L+
Sbjct: 109 LWRKVKPHPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELEL 168
Query: 698 ---TSTMTWTLICTKGNPARWRDFHSATMLGNH------MYVFGGRADRFGPFHSNNEIY 850
+ + W++ TKG R+ H+A + MYVFGG
Sbjct: 169 QHGSGVVGWSIPVTKGIVPSPRESHTAVIYCRRDSGSPKMYVFGGMCGA----------R 218
Query: 851 CNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ + D T +W +P R H+A ++YIFGG+
Sbjct: 219 LDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGW 263
Score = 65.5 bits (158), Expect = 5e-11
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 28/248 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 421
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 422 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
+VP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --IVPSPRESHTAVIYCRRDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 584 VPGARDGHSACVLGKTMYIFGGY-----EQLA----DC---FSNDIHKLDTSTMTWTLIC 727
VP R H+A V+G MYIFGG+ E + DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENIEASPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 728 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 889
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 890 WLDCPPTP 913
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|XP_003133045.1| PREDICTED: leucine-zipper-like transcriptional regulator 1-like
[Sus scrofa].
Length = 840
Score = 74.3 bits (181), Expect = 1e-13
Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 16/262 (6%)
Frame = +2
Query: 245 GPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQA 424
G RR H VA +Y FGG ++ +T+ D+ F+ W R T G
Sbjct: 65 GARRSKHTVVAYKDAIYVFGG----DNGKTMLN-DLLRFDVKDCSWC-----RAFTTGTP 114
Query: 425 PVVPYMRYGHSTVLIDDTVFLWGG------RNDTEGACNVLYAFDVNTHKWSTPRVAGTV 586
P RY HS V+ ++F++GG N N L+ + T +W+ ++ G +
Sbjct: 115 PAP---RYHHSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRL 171
Query: 587 PGARDGHSACVLGKTMYIFGGYE---QLADCFSNDIHKLDTSTMTWTLICTKGN-PARWR 754
P AR H A V ++IF GY+ +L D ++ I D W + G P
Sbjct: 172 PVARSAHGATVYSDKLWIFAGYDGNARLNDMWT--IGLQDRELTCWEEVAQSGEIPPSCC 229
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP------TPV 916
+F A + + M+VF G++ G +NN + F+ + + W P +P
Sbjct: 230 NF-PAAVCRDRMFVFSGQS---GAKITNN------LFQFEFKDKTWTRIPTEHLLRGSPP 279
Query: 917 LPEGRRSHSAFGYNGELYIFGG 982
P+ R H+ ++ LY+FGG
Sbjct: 280 PPQRRYGHTMVAFDRHLYVFGG 301
Score = 70.1 bits (170), Expect = 2e-12
Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Frame = +2
Query: 551 HKWST-PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 727
H+W P V R H+ +Y+FGG ND+ + D +W
Sbjct: 52 HRWRRLPPCDEFVGARRSKHTVVAYKDAIYVFGGDN--GKTMLNDLLRFDVKDCSWCRAF 109
Query: 728 TKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR--TEAWLDC 901
T G P R HSA + G+ M+VFGG G +SN+ + N+ +F+ + T W +
Sbjct: 110 TTGTPPAPRYHHSAVVYGSSMFVFGGYT---GDIYSNSNLK-NKNDLFEYKFATGQWTEW 165
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY--NARLN 1000
LP R +H A Y+ +L+IF GY NARLN
Sbjct: 166 KIEGRLPVARSAHGATVYSDKLWIFAGYDGNARLN 200
Score = 55.8 bits (133), Expect = 4e-08
Identities = 54/192 (28%), Positives = 75/192 (39%), Gaps = 3/192 (1%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 427
P N A R++ F G + L Q F WT++P RG P
Sbjct: 226 PSCCNFPAAVCRDRMFVFSGQSGAKITNNLFQ-----FEFKDKTWTRIP-TEHLLRGSPP 279
Query: 428 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWST--PRVAGTVPGARD 601
P RYGH+ V D ++++GG D N L+ +DV+ W P V GA
Sbjct: 280 P-PQRRYGHTMVAFDRHLYVFGGAADNT-LPNELHCYDVDFQTWEVIQPSSDSEVGGAET 337
Query: 602 GHSACVLGKTMYIFGGYEQLADCFSNDIHKLD-TSTMTWTLICTKGNPARWRDFHSATML 778
A + G E+ A S D+ LD ST R FH+A ++
Sbjct: 338 PERASA-SEEAPALGSEERGACKKSRDVFGLDFGSTTARQPTLPASELPSGRLFHAAAVI 396
Query: 779 GNHMYVFGGRAD 814
+ MY+FGG D
Sbjct: 397 SDAMYIFGGTVD 408
>ref|XP_003360845.1| PREDICTED: kelch domain-containing protein 10-like, partial [Sus
scrofa].
Length = 386
Score = 73.9 bits (180), Expect = 1e-13
Identities = 68/271 (25%), Positives = 104/271 (38%), Gaps = 21/271 (7%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYC---------SGEDYETLRQI-DVHIFNAVSLRWTKLPP 397
P R H VA +Y FGGY EDY R++ H V W ++
Sbjct: 34 PARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGV---WHQM-- 88
Query: 398 VRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNV--LYAFDVNTHKWSTPR 571
G +P S VL + + ++GG G N ++ +V +W+
Sbjct: 89 ------GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS 142
Query: 572 VAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPA-- 745
G P G + ++ ++Y+FGG +S D+HKLD +T WT +
Sbjct: 143 CRGKKPSRIYGQAMAIINGSLYVFGG--TTGYIYSTDLHKLDLNTREWTQLKPNNLSCDL 200
Query: 746 ---RWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPV 916
R+R H G +Y+ GG S N+I ++ T AW + P
Sbjct: 201 PEERYR--HEIAHDGQRIYILGGGT-------SWTAYSLNKIHAYNLETNAWEEIATKPH 251
Query: 917 ----LPEGRRSHSAFGYNGELYIFGGYNARL 997
P RR HS +++I GGYN +
Sbjct: 252 DKIGFPAARRCHSCVQIKNDVFICGGYNGEV 282
Score = 66.6 bits (161), Expect = 2e-11
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 9/243 (3%)
Frame = +2
Query: 281 GHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHST 460
G+ + FGG +G + DVH+ N RW L + RG+ P YG +
Sbjct: 107 GNNLLVFGG--TGIPFGESNGNDVHVCNVKYKRWALL-----SCRGKKPS---RIYGQAM 156
Query: 461 VLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPR---VAGTVPGARDGHSACVLGKT 631
+I+ +++++GG + + L+ D+NT +W+ + ++ +P R H G+
Sbjct: 157 AIINGSLYVFGGTTGYIYSTD-LHKLDLNTREWTQLKPNNLSCDLPEERYRHEIAHDGQR 215
Query: 632 MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSATMLGNHMYV 796
+YI GG N IH + T W I TK G PA R HS + N +++
Sbjct: 216 IYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHDKIGFPAA-RRCHSCVQIKNDVFI 274
Query: 797 FGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSH-SAFGYNGELYI 973
GG N E+ I + +T W+ P T +PE H +A G +YI
Sbjct: 275 CGG---------YNGEVILGDIWKLNLQTFQWVKLPAT--MPEPVYFHCAAVTPAGCMYI 323
Query: 974 FGG 982
GG
Sbjct: 324 HGG 326
Score = 48.5 bits (114), Expect = 6e-06
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Frame = +2
Query: 587 PGARDGHSACVLGKTMYIFGGYEQLAD----------CFSNDIHKLDTSTMTWTLICTKG 736
P AR GH +Y+FGGY D ++ + +T W + T G
Sbjct: 33 PPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDG 92
Query: 737 NPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPV 916
R S + GN++ VFGG FG + N+ CN + A L C
Sbjct: 93 YMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCN----VKYKRWALLSC----- 143
Query: 917 LPEGRRSHSAFG-----YNGELYIFGG 982
G++ +G NG LY+FGG
Sbjct: 144 --RGKKPSRIYGQAMAIINGSLYVFGG 168
>ref|XP_003121855.1| PREDICTED: kelch domain-containing protein 1 [Sus scrofa].
Length = 406
Score = 70.9 bits (172), Expect = 1e-12
Identities = 76/275 (27%), Positives = 112/275 (40%), Gaps = 29/275 (10%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 430
R H AV G+ +Y +GGY S ED E L ++ ++ S WT G+
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWT-----MHLMEGE--- 64
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 595
+P G I+ ++++GG +D +G N LY ++ T+ W G P
Sbjct: 65 LPTSMSGSCGACINGKLYVFGGYDD-KGYSNRLYFVNLRTRDGTYIWEKITNFEGQPPTP 123
Query: 596 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 715
RD S V + FGGY +L DCF ND+H DT T +W
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGCRRHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTQSW 183
Query: 716 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW 892
KG P + R H+ +LGN Y+FGGR + N + + T W
Sbjct: 184 LQPEIKGGVPPQPRAAHTCAVLGNKGYIFGGRV---------LQTRMNDLHYLNLDTWTW 234
Query: 893 LD-CPPTPVLPEGRRSHSAFGY-NGELYIFGGYNA 991
P P+ R H+ + L++FGG +A
Sbjct: 235 SGRIPVNGENPKHRSWHTLTPIADDTLFLFGGLSA 269
Score = 67.4 bits (163), Expect = 1e-11
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Frame = +2
Query: 443 RYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 607
R GH V+ + +++WGG N+ + ++ +D+++ W+ + G +P + G
Sbjct: 13 RSGHCAVVDGNFLYVWGGYVSIEDNEVYLPNDEIWTYDIDSGLWTMHLMEGELPTSMSGS 72
Query: 608 -SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSA 769
AC+ GK +Y+FGGY+ +SN ++ ++ T T I K G P RD S
Sbjct: 73 CGACINGK-LYVFGGYDDKG--YSNRLYFVNLRTRDGTYIWEKITNFEGQPPTPRDKLSC 129
Query: 770 TMLGNHMYVFGGRADRFGPFHSNNEI------------------YCNRIRVFDTRTEAWL 895
+ + + FGG R +NE+ + N + +FDT+T++WL
Sbjct: 130 WVYKDRLIYFGGYGCR-----RHNELQDCFDVHDASWEEQIFWGWHNDVHIFDTKTQSWL 184
Query: 896 DCP-PTPVLPEGRRSHSAFGYNGELYIFGG--YNARLN-RHFMISEV*PW 1033
V P+ R +H+ + YIFGG R+N H++ + W
Sbjct: 185 QPEIKGGVPPQPRAAHTCAVLGNKGYIFGGRVLQTRMNDLHYLNLDTWTW 234
>ref|XP_001927324.3| PREDICTED: attractin, partial [Sus scrofa].
Length = 1158
Score = 67.4 bits (163), Expect = 1e-11
Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 13/260 (5%)
Frame = +2
Query: 257 VNHAAVAVGH-------RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATR 415
VN V GH ++Y +GG T HI N + T + A
Sbjct: 373 VNSVVVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKEQYAVV 432
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + + + G +L+ +F G G + + +D++ + WS G +
Sbjct: 433 GHSAHIVTLTSGRVVMLV---IF---GHCPLYGYISNVQEYDLDKNTWSILHTQGALVQG 486
Query: 596 RDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPARWRDF 760
GHS+ + + +Y+ GGY+ + ++D+++ + T WT++ + +R
Sbjct: 487 GYGHSSVFDHITRALYVHGGYKAFSANKYRLADDLYRYNVDTQMWTIL---KDSRFFRYL 543
Query: 761 HSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR-S 937
H+A ++ M VFGG + + + +D + W P + + R
Sbjct: 544 HTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRWSVLPRPDLHHDVNRFG 603
Query: 938 HSAFGYNGELYIFGGYNARL 997
HSA +N +Y+FGG+N+ L
Sbjct: 604 HSAVLHNSTMYVFGGFNSLL 623
Score = 63.2 bits (152), Expect = 2e-10
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 9/252 (3%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYC-SGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 430
R +H AV G+ ++ GGY + DY + D+ S W L +
Sbjct: 328 RASHKAVVNGNIMWIVGGYMFNHSDYNMVLAYDL-----ASREWLAL--------NSSVN 374
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEG-ACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 607
+RYGHS L D ++++GG+ D+ G N L F ++ W A GH
Sbjct: 375 SVVVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKEQYAVVGH 434
Query: 608 SACVLGKT-----MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSAT 772
SA ++ T M + G+ L SN + + D TW+++ T+G + HS+
Sbjct: 435 SAHIVTLTSGRVVMLVIFGHCPLYGYISN-VQEYDLDKNTWSILHTQGALVQGGYGHSSV 493
Query: 773 M--LGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSA 946
+ +YV GG + F +N + + ++ T+ W + R H+A
Sbjct: 494 FDHITRALYVHGG----YKAFSANKYRLADDLYRYNVDTQMWTILKDSRFF---RYLHTA 546
Query: 947 FGYNGELYIFGG 982
+G + +FGG
Sbjct: 547 VIVSGTMLVFGG 558
>ref|XP_001925243.3| PREDICTED: kelch domain-containing protein 2 [Sus scrofa].
Length = 344
Score = 63.9 bits (154), Expect = 1e-10
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 26/211 (12%)
Frame = +2
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHK----WSTPRVAGTVPGAR 598
VP G V +D ++L+GG + + G N Y D + W G P ++
Sbjct: 25 VPPSMSGSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLHWERIDCQGIPPSSK 83
Query: 599 DGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTSTMTW 715
D V + FGGY L + +++ +H LDT T W
Sbjct: 84 DKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFIW 143
Query: 716 TLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWL 895
+ T G R H+ +GN +VFGGR + N + + T W
Sbjct: 144 SQPITTGKAPSPRAAHACATVGNKGFVFGGR---------YRDARMNDLHYLNLDTWEWN 194
Query: 896 DCPPTPVLPEGRRSHSAFGYNGE-LYIFGGY 985
+ P + P GR HS + + L++FGG+
Sbjct: 195 ELIPQGICPVGRSWHSLTPVSSDHLFLFGGF 225
>ref|XP_003127214.2| PREDICTED: multiple epidermal growth factor-like domains protein 8,
partial [Sus scrofa].
Length = 2550
Score = 62.8 bits (151), Expect = 3e-10
Identities = 78/284 (27%), Positives = 114/284 (40%), Gaps = 24/284 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSL-RWTKLPPVRPATRGQAPV 430
R +H AVA + GG + DV F+ + W L P PA+ P
Sbjct: 93 RHSHVAVAWAGSLVLMGGELADGSLTN----DVWAFSPLGGGHWELLAP--PASSSSGP- 145
Query: 431 VPYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHK---WSTPRVAGTVPGAR 598
P + GH+ L+D+ +++ GGR + + L+ F +N+ W AG P A
Sbjct: 146 -PGLA-GHAAALVDNIWLYVSGGRTQHDLFSSGLFRFRLNSTSRGYWEQVIPAGGRPPAA 203
Query: 599 DGHSAC--VLGKTMYIFGGYEQLADCFS---NDIHKLDTSTMTWTLICTKGNPA----RW 751
GHS + + + GG+ FS N WT + KG R
Sbjct: 204 TGHSMVFHAPSRALLVHGGHRPSTARFSVRVNSTELFHVDRRVWTTL--KGRDGLQGPRE 261
Query: 752 RDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAW-----LDCPPTP- 913
R FH+A++LGN+M V+GG + + Y + I + W L P TP
Sbjct: 262 RAFHTASVLGNYMVVYGGNVH---THYQEEKCYEDGIFFYHLGCHQWVSGAELAPPGTPE 318
Query: 914 ---VLPEGRRSHSAFGYNGE-LYIFGGYNARLNRHFMISEV*PW 1033
P GR SH A G L + GGY+ R M +V P+
Sbjct: 319 GRAAPPSGRYSHVAAVLGGSVLLVAGGYSGRPRGDLMAYKVPPF 362
Score = 61.6 bits (148), Expect = 7e-10
Identities = 79/294 (26%), Positives = 117/294 (39%), Gaps = 39/294 (13%)
Frame = +2
Query: 221 RWTVHLEGG--------PRRVNHAAVAVGHR--VYSFGGYCSGEDYETLRQIDVHIFNAV 370
RWT L G PR + AA R +Y GG +G D + N
Sbjct: 1295 RWTQMLAGAEDGGPGPSPRSFHAAAYVPAGRGAMYLLGGLTAGGVAR-----DFWVLNLT 1349
Query: 371 SLRWT--KLPPV--RPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAF 538
+L+W K P PA G + P R G S +L+ GG + G L +
Sbjct: 1350 TLQWRQEKAPQTVELPAVAGHT-LTP--RRGLSLLLV-------GGYSPENGFNQQLLEY 1399
Query: 539 DVNTHKWSTPRVAGTVPGARDGHSACVLGKT--MYIFGGYE---QLADCFSNDIHKLDTS 703
+ T W + +GT P GHSA T +Y+FGG+ +LA S +++ L
Sbjct: 1400 QLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVFGGFRFHVELA-APSPELYSLHCP 1458
Query: 704 TMTWTLIC----TKGNPARW-----------RDFHSATMLGNHMYVFGGRADRFGPFHSN 838
TW+L+ K + W R FH++ +LG+ M V GGR+D
Sbjct: 1459 DRTWSLLAPSQGAKSSSDGWSCHVSPRQPRPRLFHASALLGDTMVVLGGRSD-------- 1510
Query: 839 NEIYCNRIRVFDTRTEAWL---DCPPTPVLP--EGRRSHSAFGYNGELYIFGGY 985
+ + + + ++ WL P V P E +H+ G LYI GG+
Sbjct: 1511 PDEFSSDVLLYQVNCNTWLLPDLIRPASVGPPMEESVAHAVAAVGGRLYISGGF 1564
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,487,363
Number of extensions: 1092633
Number of successful extensions: 5470
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5291
Number of HSP's successfully gapped: 40
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012853
(1083 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157201.2| kelch domain-containing protein 3 [Mus muscu... 563 e-161
Alignment gi|NP_082186.2| kelch domain-containing protein 3 [Mus musculus]. 563 e-161
Alignment gi|NP_032250.2| host cell factor 1 [Mus musculus]. 86 5e-17
Alignment gi|NP_663497.2| rab9 effector protein with kelch motifs [Mus mu... 85 9e-17
Alignment gi|NP_001074687.1| host cell factor 2 [Mus musculus]. 82 9e-16
Alignment gi|NP_852080.3| attractin-like protein 1 precursor [Mus musculu... 81 2e-15
Alignment gi|NP_081393.2| kelch domain-containing protein 2 [Mus musculus]. 81 2e-15
Alignment gi|NP_839984.1| kelch domain-containing protein 1 [Mus musculus]. 75 7e-14
Alignment gi|NP_084018.1| kelch domain-containing protein 10 [Mus musculu... 75 7e-14
Alignment gi|NP_033860.2| attractin precursor [Mus musculus]. 74 3e-13
>ref|NP_001157201.2| kelch domain-containing protein 3 [Mus musculus].
Length = 382
Score = 563 bits (1452), Expect = e-161
Identities = 259/265 (97%), Positives = 261/265 (98%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+G VPGARDGHSACVLGK MYIFGGYEQLADCFSNDIHKLDTSTMTWTL+CTKGNPARWR
Sbjct: 121 SGAVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP TPVLPEGRR
Sbjct: 181 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.3 bits (181), Expect = 2e-13
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKIMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLV-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ + ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|NP_082186.2| kelch domain-containing protein 3 [Mus musculus].
Length = 382
Score = 563 bits (1452), Expect = e-161
Identities = 259/265 (97%), Positives = 261/265 (98%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PVRPA RGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV
Sbjct: 61 PVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+G VPGARDGHSACVLGK MYIFGGYEQLADCFSNDIHKLDTSTMTWTL+CTKGNPARWR
Sbjct: 121 SGAVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP TPVLPEGRR
Sbjct: 181 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 74.3 bits (181), Expect = 2e-13
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKIMYIFGGY---EQLADCFSNDIHKLDTSTMTWTLV-----CTKGNPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ + ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|NP_032250.2| host cell factor 1 [Mus musculus].
Length = 2045
Score = 85.9 bits (211), Expect = 5e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 56.2 bits (134), Expect = 4e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIETLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
Score = 42.0 bits (97), Expect(2) = 7e-06
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Frame = +2
Query: 212 GMLRWTVHLEGG---PRRVNHAAVAVGHR------VYSFGGYCSGEDYETLRQIDVHIFN 364
G++ W + + G P R +H AV + + +GG SG L +D+
Sbjct: 183 GVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGM-SGCRLGDLWTLDIE--- 238
Query: 365 AVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGG------------RNDT 508
+L W K P+ G AP+ R HS I + ++++GG ++
Sbjct: 239 --TLTWNK-----PSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288
Query: 509 EGAC-NVLYAFDVNTHKWST---PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFS 676
E C N L +++T W T + +P AR GH A + +YI+ G + ++
Sbjct: 289 EWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWN 348
Query: 677 NDI 685
N +
Sbjct: 349 NQV 351
Score = 26.2 bits (56), Expect(2) = 7e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +3
Query: 792 MSLGAVPTVSGHSTPTMRF----TATASASLTRGPRPGWTVHPPR--CCLRGAGATQPLA 953
+S GAV T + ++ TA + S T P P +PP+ A A QPL
Sbjct: 382 VSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLT 441
Query: 954 TMG 962
+G
Sbjct: 442 QVG 444
>ref|NP_663497.2| rab9 effector protein with kelch motifs [Mus musculus].
Length = 380
Score = 85.1 bits (209), Expect = 9e-17
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 7/222 (3%)
Frame = +2
Query: 347 DVHIFNAVSLRWTKLPPVRPATR-GQAPVVPYMRYGHSTVLID---DTVFLWGGRNDTEG 514
DVH + + +W ATR G P RY H++ L +++++GG D G
Sbjct: 72 DVHTMDLGTHQWDT------ATREGLLP-----RYEHASFLPSCSPHSIWVFGGA-DQSG 119
Query: 515 ACNVLYAFDVNTHKWSTPRVAGTVPGARDGH-SACVLGKTMYIFGGYEQLADCFSN-DIH 688
N L WSTP V G+ P R H S+ +G +Y+FGG E+ A + +H
Sbjct: 120 NRNCLQVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLH 179
Query: 689 KLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRA-DRFGPFHSNNEIYCNRIR 865
D +T+TW+ T G+P R H G +++ GG A D+F ++++C
Sbjct: 180 VFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGLAGDKFF-----DDLHC---- 230
Query: 866 VFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNA 991
D +W PT +P G +H+A +Y+FGG A
Sbjct: 231 -IDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTA 271
Score = 71.2 bits (173), Expect = 1e-12
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 8/252 (3%)
Frame = +2
Query: 212 GMLRW-TVHLEGGPRRVNHAAVAVG---HRVYSFGGYCSGEDYETLRQIDVHIFNAVSLR 379
G +W T EG R HA+ H ++ FGG + L+ + +
Sbjct: 79 GTHQWDTATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQ-----VMSPEDRT 133
Query: 380 WTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNV----LYAFDVN 547
W+ P G P + S+ I + ++++GG GA V L+ FD N
Sbjct: 134 WST-----PEVTGSPPSP--RTFHTSSAAIGNQLYVFGGGE--RGAQPVEDVKLHVFDAN 184
Query: 548 THKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 727
T WS P G+ P R GH G ++I GG D F +D+H +D M+W +
Sbjct: 185 TLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGL--AGDKFFDDLHCIDIGDMSWQKLG 242
Query: 728 TKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 907
G H+A +G+H+Y+FGG N + + T + W
Sbjct: 243 PTGAVPVGCAAHAAVAVGHHVYMFGGMTATGA---------LNMMYKYHTEKQHWTVLQF 293
Query: 908 TPVLPEGRRSHS 943
LP GR HS
Sbjct: 294 DTSLPAGRLDHS 305
Score = 53.1 bits (126), Expect = 4e-07
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 3/159 (1%)
Frame = +2
Query: 155 GSRGSRPCRGGMWL*PVAQGMLRWTV-HLEGGPR--RVNHAAVAVGHRVYSFGGYCSGED 325
G RG++P + L L W+ G P R H VA G +++ GG +
Sbjct: 166 GERGAQPVED-VKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGLAGDKF 224
Query: 326 YETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRND 505
++ L ID+ + W KL P G A H+ V + V+++GG
Sbjct: 225 FDDLHCIDIG-----DMSWQKLGPTGAVPVGCA--------AHAAVAVGHHVYMFGGMTA 271
Query: 506 TEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHSACVL 622
T GA N++Y + W+ + ++P R HS CV+
Sbjct: 272 T-GALNMMYKYHTEKQHWTVLQFDTSLPAGRLDHSMCVI 309
>ref|NP_001074687.1| host cell factor 2 [Mus musculus].
Length = 722
Score = 81.6 bits (200), Expect = 9e-16
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 15/205 (7%)
Frame = +2
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 610
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHG 76
Query: 611 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARW----RDFHSATML 778
G + +FGG + +SN++++L S W + + P+ + R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPQPPPSGFPPCPRLGHSFSLY 135
Query: 779 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 946
GN Y+FGG A+ ++N Y N + + W V+P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPATKGVVPSPRESHTA 195
Query: 947 FGY------NGELYIFGGY-NARLN 1000
Y + ++Y+FGG ARL+
Sbjct: 196 IIYCKKDSASPKMYVFGGMCGARLD 220
Score = 68.2 bits (165), Expect = 1e-11
Identities = 73/285 (25%), Positives = 111/285 (38%), Gaps = 25/285 (8%)
Frame = +2
Query: 206 AQGMLRWT-VHLEGGP---RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVS 373
A +L W V GP R H AVA+ + FGG G E +H++N V+
Sbjct: 3 APSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADE------LHVYNTVT 56
Query: 374 LRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH 553
+W PA RG +P H V + ++GG + N LY +
Sbjct: 57 NQW-----FLPAVRGD---IPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRW 108
Query: 554 KWST----PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD- 697
W P +G P R GHS + G Y+FGG ++ + ND ++L+
Sbjct: 109 LWKKVKPQPPPSGFPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELEL 168
Query: 698 ---TSTMTWTLICTKGNPARWRDFHSATML------GNHMYVFGGRADRFGPFHSNNEIY 850
+ + W++ TKG R+ H+A + MYVFGG
Sbjct: 169 QHGSGVVGWSIPATKGVVPSPRESHTAIIYCKKDSASPKMYVFGGMCGA----------R 218
Query: 851 CNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ + D T +W +P R H+A ++YIFGG+
Sbjct: 219 LDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGW 263
Score = 66.6 bits (161), Expect = 3e-11
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 28/248 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 421
R+ H+ G++ Y FGG + E ++ + ++ + L V PAT+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPATKG- 184
Query: 422 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
VVP R H+ ++ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --VVPSPRESHTAIIYCKKDSASPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 584 VPGARDGHSACVLGKTMYIFGGY---------EQLADC---FSNDIHKLDTSTMTWTLIC 727
VP R H+A V+G MYIFGG+ DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENPETSPHDCEWRCTSSFSYLNLDTAEWTTLV 300
Query: 728 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 889
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 890 WLDCPPTP 913
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|NP_852080.3| attractin-like protein 1 precursor [Mus musculus].
Length = 1378
Score = 80.9 bits (198), Expect = 2e-15
Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 13/270 (4%)
Frame = +2
Query: 245 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 418
GP +R H+ ++ +GG D ++ +FN S W TK P V ++
Sbjct: 350 GPLQRYGHSLALYQENIFMYGGRMETSDGNVTDEL--WVFNVRSQSWSTKTPTVLGHSQ- 406
Query: 419 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 407 -----QYAVEGHSAHIMELDSRDVVMIVIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 461
Query: 584 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 748
+ GH++ + K++Y+ GGY+ L +D++K + +T TWT++ G
Sbjct: 462 IVQGGYGHTSVYDEVTKSIYVHGGYKALPGNKYGLVDDLYKYEVNTRTWTILKESGFA-- 519
Query: 749 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 925
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 520 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKTLPKPNLHRDV 578
Query: 926 GRRSHSAFGYNGELYIFGGYNARLNRHFMI 1015
R HSA NG +YIFGG+++ L ++
Sbjct: 579 NRFGHSAVVINGSMYIFGGFSSVLLNDILV 608
>ref|NP_081393.2| kelch domain-containing protein 2 [Mus musculus].
Length = 406
Score = 80.9 bits (198), Expect = 2e-15
Identities = 72/275 (26%), Positives = 113/275 (41%), Gaps = 31/275 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGE-----DYETLRQIDVHIFNAVSLRWTKLPPVRPATRG 418
R H AV+ G ++ +GGY S + D+ R+ ++ I+N + RW K+ T G
Sbjct: 32 RSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPRE-ELWIYNMETGRWKKIN-----TEG 85
Query: 419 QAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH----KWSTPRVAGTV 586
P P M G V +D ++L+GG + + G N Y D + +W G
Sbjct: 86 DVP--PSMS-GSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSADRGLQWERIDCQGIP 141
Query: 587 PGARDGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTS 703
P ++D V + FGGY L + +++ +H LDT
Sbjct: 142 PSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTE 201
Query: 704 TMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRT 883
T W+ T G R H+ +GN +VFGGR + N + + T
Sbjct: 202 TFAWSQPITTGKAPSPRAAHACATVGNKGFVFGGR---------YRDARMNDLHYLNLDT 252
Query: 884 EAWLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGY 985
W + P V P GR HS + + L++FGG+
Sbjct: 253 WEWNELIPQGVCPVGRSWHSLTPVSSDHLFLFGGF 287
Score = 65.5 bits (158), Expect = 7e-11
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 29/229 (12%)
Frame = +2
Query: 434 PYMRYGHSTVLIDDTVFLWGG--RNDTEGACNV------LYAFDVNTHKWSTPRVAGTVP 589
P R GH V +F+WGG N G + L+ +++ T +W G VP
Sbjct: 29 PAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWIYNMETGRWKKINTEGDVP 88
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST----MTWTLICTKGNPARWRD 757
+ G A + + +Y+FGG+ + +N + LD+ + + W I +G P +D
Sbjct: 89 PSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRSADRGLQWERIDCQGIPPSSKD 146
Query: 758 FHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN---------RIRVFDTRTEAWL 895
+ N + FGG D+ G F + + N + + DT T AW
Sbjct: 147 KLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFAWS 206
Query: 896 DCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLN-RHFMISEV*PW 1033
T P R +H+ + ++FGG +AR+N H++ + W
Sbjct: 207 QPITTGKAPSPRAAHACATVGNKGFVFGGRYRDARMNDLHYLNLDTWEW 255
>ref|NP_839984.1| kelch domain-containing protein 1 [Mus musculus].
Length = 406
Score = 75.5 bits (184), Expect = 7e-14
Identities = 83/279 (29%), Positives = 115/279 (41%), Gaps = 33/279 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYET-LRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 430
R H AV GH +Y +GGY S ED E L ++ ++ S W G+ P
Sbjct: 13 RSGHCAVVDGHFLYVWGGYVSIEDNEVYLPNDEMWTYDIDSGLWK-----MHLMEGELP- 66
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDV----NTHKW-STPRVAGTVPGA 595
P M G I ++++GG +D +G N LY ++ T+ W + G P
Sbjct: 67 -PSMS-GSCGACIHGRLYVFGGYDD-KGYSNRLYFVNLRTRDGTYTWEKITKFDGQPPTP 123
Query: 596 RDGHSACVLGKTMYIFGGY-----EQLADCFS---------------NDIHKLDTSTMTW 715
RD S V + FGGY +L +CF ND+H DT T TW
Sbjct: 124 RDKLSCWVYKDRLIYFGGYGYRRHSELQECFDVHDASWEEQIFWGWHNDVHVFDTKTRTW 183
Query: 716 TLICTKGN-PARWRDFHSATMLGNHMYVFGGRA--DRFGPFHSNN---EIYCNRIRVFDT 877
+ KG P + R HS +LGN YVFGGR R H N ++ RI V
Sbjct: 184 SQPEIKGGVPPQPRAAHSCAVLGNKGYVFGGRVLQTRMNDLHYLNLDTWVWSGRISV--- 240
Query: 878 RTEAWLDCPPTPVLPEGRRSHSAFGY-NGELYIFGGYNA 991
P+ R H+ + +L++FGG NA
Sbjct: 241 ----------NGESPKHRSWHTLTAITDDKLFLFGGLNA 269
Score = 61.6 bits (148), Expect = 1e-09
Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Frame = +2
Query: 419 QAPVVPYMRYGHSTVLIDDTVFLWGGR-----NDTEGACNVLYAFDVNTHKWSTPRVAGT 583
QA V R GH V+ +++WGG N+ + ++ +D+++ W + G
Sbjct: 5 QAFCVAEERSGHCAVVDGHFLYVWGGYVSIEDNEVYLPNDEMWTYDIDSGLWKMHLMEGE 64
Query: 584 VPGARDGH-SACVLGKTMYIFGGYEQLADCFSNDIH----KLDTSTMTWTLICT-KGNPA 745
+P + G AC+ G+ +Y+FGGY+ +SN ++ + T TW I G P
Sbjct: 65 LPPSMSGSCGACIHGR-LYVFGGYDDKG--YSNRLYFVNLRTRDGTYTWEKITKFDGQPP 121
Query: 746 RWRDFHSATMLGNHMYVFGGRADR--------FGPFHSNNEI-----YCNRIRVFDTRTE 886
RD S + + + FGG R F ++ E + N + VFDT+T
Sbjct: 122 TPRDKLSCWVYKDRLIYFGGYGYRRHSELQECFDVHDASWEEQIFWGWHNDVHVFDTKTR 181
Query: 887 AWLDCP-PTPVLPEGRRSHSAFGYNGELYIFGG 982
W V P+ R +HS + Y+FGG
Sbjct: 182 TWSQPEIKGGVPPQPRAAHSCAVLGNKGYVFGG 214
>ref|NP_084018.1| kelch domain-containing protein 10 [Mus musculus].
Length = 439
Score = 75.5 bits (184), Expect = 7e-14
Identities = 68/269 (25%), Positives = 104/269 (38%), Gaps = 19/269 (7%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYC---------SGEDYETLRQI-DVHIFNAVSLRWTKLPP 397
P R H VA +Y FGGY EDY R++ H V W ++
Sbjct: 87 PARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGV---WHQM-- 141
Query: 398 VRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNV--LYAFDVNTHKWSTPR 571
G +P S VL + + ++GG G N ++ +V +W+
Sbjct: 142 ------GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS 195
Query: 572 VAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKG---NP 742
G P G + ++ ++Y+FGG +S D+HKLD +TM WT + +
Sbjct: 196 CRGKRPSRIYGQAMALINGSLYVFGG--TTGYIYSTDLHKLDLNTMVWTQLKPNNLSCDL 253
Query: 743 ARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTP--- 913
R H G +Y+ GG S N+I ++ T AW + P
Sbjct: 254 PEERYRHEIAHDGQRIYILGGGT-------SWTAYSLNKIHAYNLETNAWEEIATKPHEK 306
Query: 914 -VLPEGRRSHSAFGYNGELYIFGGYNARL 997
P RR HS +++I GGYN +
Sbjct: 307 IGFPAARRCHSCVQIKNDVFICGGYNGEV 335
Score = 49.7 bits (117), Expect = 4e-06
Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Frame = +2
Query: 587 PGARDGHSACVLGKTMYIFGGYEQLAD----------CFSNDIHKLDTSTMTWTLICTKG 736
P AR GH +Y+FGGY D ++ + +T W + T G
Sbjct: 86 PPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDG 145
Query: 737 NPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPV 916
R S + GN++ VFGG FG + N+ CN + A L C
Sbjct: 146 YMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCN----VKYKRWALLSC----- 196
Query: 917 LPEGRRSHSAFG-----YNGELYIFGG 982
G+R +G NG LY+FGG
Sbjct: 197 --RGKRPSRIYGQAMALINGSLYVFGG 221
>ref|NP_033860.2| attractin precursor [Mus musculus].
Length = 1428
Score = 73.6 bits (179), Expect = 3e-13
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 14/261 (5%)
Frame = +2
Query: 257 VNHAAVAVGH-------RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATR 415
VN V GH ++Y +GG T HI N + T + A
Sbjct: 385 VNSVVVRYGHSLALHKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKDQYAVV 444
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + + + G +L+ +F G G +V+ +D+ + WS G +
Sbjct: 445 GHSAHIVTLASGRVVMLV---IF---GHCPLYGYISVVQEYDLEKNTWSILHTQGALVQG 498
Query: 596 RDGHSACVLGKT--MYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPARWRDF 760
GHS+ +T +Y+ GGY+ + ++D+++ D T WT++ + +R
Sbjct: 499 GYGHSSVYDDRTKALYVHGGYKAFSANKYRLADDLYRYDVDTQMWTIL---KDSRFFRYL 555
Query: 761 HSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPE--GRR 934
H+A ++ M VFGG + + + +D + W P P L R
Sbjct: 556 HTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRW-SVLPRPELHHDVNRF 614
Query: 935 SHSAFGYNGELYIFGGYNARL 997
HSA YN +Y+FGG+N+ L
Sbjct: 615 GHSAVLYNSTMYVFGGFNSLL 635
Score = 58.9 bits (141), Expect = 7e-09
Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 14/257 (5%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYC-SGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPV 430
R +H AV G+ ++ GGY + DY + D+ S W P V
Sbjct: 340 RASHKAVVNGNIMWVVGGYMFNHSDYSMVLAYDL-----TSREWL------PLNHSVNSV 388
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEG-ACNVLYAFDVNTHKWSTPRVAGTVPGARD-- 601
V +RYGHS L D ++++GG+ D+ G N L F ++ W P A+D
Sbjct: 389 V--VRYGHSLALHKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVL-----LTPKAKDQY 441
Query: 602 ---GHSACVL----GK-TMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
GHSA ++ G+ M + G+ L + + + + D TW+++ T+G +
Sbjct: 442 AVVGHSAHIVTLASGRVVMLVIFGHCPLYG-YISVVQEYDLEKNTWSILHTQGALVQGGY 500
Query: 758 FHSATM--LGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGR 931
HS+ +YV GG + F +N + + +D T+ W + R
Sbjct: 501 GHSSVYDDRTKALYVHGG----YKAFSANKYRLADDLYRYDVDTQMWTILKDSRFF---R 553
Query: 932 RSHSAFGYNGELYIFGG 982
H+A +G + +FGG
Sbjct: 554 YLHTAVIVSGTMLVFGG 570
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,608,659
Number of extensions: 1343441
Number of successful extensions: 6291
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 6045
Number of HSP's successfully gapped: 46
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012853
(1083 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_476502.1| kelch domain-containing protein 3 isoform 1 [Ho... 554 e-158
Alignment gi|NP_001229801.1| kelch domain-containing protein 3 isoform 2 ... 446 e-125
Alignment gi|NP_001167623.1| rab9 effector protein with kelch motifs isof... 89 7e-18
Alignment gi|NP_005824.2| rab9 effector protein with kelch motifs isoform... 89 7e-18
Alignment gi|NP_001167624.1| rab9 effector protein with kelch motifs isof... 88 1e-17
Alignment gi|NP_005325.2| host cell factor 1 [Homo sapiens]. 86 6e-17
Alignment gi|NP_055130.1| kelch domain-containing protein 2 [Homo sapiens]. 83 5e-16
Alignment gi|NP_997186.1| attractin-like protein 1 precursor [Homo sapien... 81 2e-15
Alignment gi|NP_037452.1| host cell factor 2 [Homo sapiens]. 80 2e-15
Alignment gi|NP_055812.1| kelch domain-containing protein 10 [Homo sapien... 74 2e-13
>ref|NP_476502.1| kelch domain-containing protein 3 isoform 1 [Homo sapiens].
Length = 382
Score = 554 bits (1427), Expect = e-158
Identities = 255/265 (96%), Positives = 259/265 (97%)
Frame = +2
Query: 215 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 394
MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP
Sbjct: 1 MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLP 60
Query: 395 PVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRV 574
PV+ A RGQAPVVPYMRYGHSTVLIDDTV LWGGRNDTEGACNVLYAFDVNTHKW TPRV
Sbjct: 61 PVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRV 120
Query: 575 AGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWR 754
+GTVPGARDGHSACVLGK MYIFGGYEQ ADCFSNDIHKLDTSTMTWTLICTKG+PARWR
Sbjct: 121 SGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWR 180
Query: 755 DFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 934
DFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR
Sbjct: 181 DFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRR 240
Query: 935 SHSAFGYNGELYIFGGYNARLNRHF 1009
SHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 241 SHSAFGYNGELYIFGGYNARLNRHF 265
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 128 RDGHSACVLGKIMYIFGGY---EQQADCFSNDIHKLDTSTMTWTLI-----CTKGSPA-- 177
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 178 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 236
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 237 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 296
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 297 CIVGDKIVLFGG 308
>ref|NP_001229801.1| kelch domain-containing protein 3 isoform 2 [Homo sapiens].
Length = 367
Score = 446 bits (1147), Expect = e-125
Identities = 204/214 (95%), Positives = 208/214 (97%)
Frame = +2
Query: 368 VSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVN 547
VSLRWTKLPPV+ A RGQAPVVPYMRYGHSTVLIDDTV LWGGRNDTEGACNVLYAFDVN
Sbjct: 37 VSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVN 96
Query: 548 THKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLIC 727
THKW TPRV+GTVPGARDGHSACVLGK MYIFGGYEQ ADCFSNDIHKLDTSTMTWTLIC
Sbjct: 97 THKWFTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLIC 156
Query: 728 TKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 907
TKG+PARWRDFHSATMLG+HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP
Sbjct: 157 TKGSPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPP 216
Query: 908 TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHF 1009
TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHF
Sbjct: 217 TPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHF 250
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H+A +G +Y FGGY E D+H + ++ WT + T+G
Sbjct: 113 RDGHSACVLGKIMYIFGGY---EQQADCFSNDIHKLDTSTMTWTLI-----CTKGSPA-- 162
Query: 434 PYMRYGHSTVLIDDTVFLWGGRNDTEGA--------CNVLYAFDVNTHKWSTPRVAGTVP 589
R HS ++ ++++GGR D G CN + FD T W +P
Sbjct: 163 -RWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLP 221
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSA 769
R HSA +YIFGGY + +D+ K + + TW I KG R
Sbjct: 222 EGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCC 281
Query: 770 TMLGNHMYVFGG 805
++G+ + +FGG
Sbjct: 282 CIVGDKIVLFGG 293
>ref|NP_001167623.1| rab9 effector protein with kelch motifs isoform a [Homo sapiens].
Length = 372
Score = 89.0 bits (219), Expect = 7e-18
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Frame = +2
Query: 443 RYGHSTVL---IDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH-S 610
RY H++ + D ++++GG N + G N L + T W+TP V P R H S
Sbjct: 86 RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTS 144
Query: 611 ACVLGKTMYIFGGYEQLADCFSND-IHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNH 787
+ +G +Y+FGG E+ A + +H D +T+TW+ T GNP R H G
Sbjct: 145 SAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTK 204
Query: 788 MYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGE 964
+++ GG A DRF ++++C D W PT P G +HSA
Sbjct: 205 LFIHGGLAGDRF-----YDDLHC-----IDISDMKWQKLNPTGAAPAGCAAHSAVAMGKH 254
Query: 965 LYIFGG 982
+YIFGG
Sbjct: 255 VYIFGG 260
Score = 78.2 bits (191), Expect = 1e-14
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
Frame = +2
Query: 287 RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTK----LPPVRPATRGQAPVVPYMRYGH 454
R++ FGG + L+ + N + WT PP P T +
Sbjct: 100 RIWVFGGANQSGNRNCLQ-----VLNPETRTWTTPEVTSPPPSPRT-----------FHT 143
Query: 455 STVLIDDTVFLWGGRNDTEGACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACVL 622
S+ I + ++++GG GA V L+ FD NT WS P G P R GH
Sbjct: 144 SSAAIGNQLYVFGGGE--RGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAA 201
Query: 623 GKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFG 802
G ++I GG D F +D+H +D S M W + G HSA +G H+Y+FG
Sbjct: 202 GTKLFIHGGL--AGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFG 259
Query: 803 GRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 943
G P + + +Y + T + W +LP GR HS
Sbjct: 260 GMT----PAGALDTMY-----QYHTEEQHWTLLKFDTLLPPGRLDHS 297
Score = 68.2 bits (165), Expect = 1e-11
Identities = 45/159 (28%), Positives = 76/159 (47%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 427
PR + ++ A+G+++Y FGG G + ++ +H+F+A +L W+ +P T G
Sbjct: 138 PRTFHTSSAAIGNQLYVFGGGERGA--QPVQDTKLHVFDANTLTWS-----QPETLGNP- 189
Query: 428 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 607
P R+GH V +F+ GG + + L+ D++ KW G P H
Sbjct: 190 --PSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAH 246
Query: 608 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI 724
SA +GK +YIFGG + +++ T WTL+
Sbjct: 247 SAVAMGKHVYIFGGMTPAGAL--DTMYQYHTEEQHWTLL 283
>ref|NP_005824.2| rab9 effector protein with kelch motifs isoform a [Homo sapiens].
Length = 372
Score = 89.0 bits (219), Expect = 7e-18
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Frame = +2
Query: 443 RYGHSTVL---IDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH-S 610
RY H++ + D ++++GG N + G N L + T W+TP V P R H S
Sbjct: 86 RYEHASFIPSCTPDRIWVFGGANQS-GNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTS 144
Query: 611 ACVLGKTMYIFGGYEQLADCFSND-IHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNH 787
+ +G +Y+FGG E+ A + +H D +T+TW+ T GNP R H G
Sbjct: 145 SAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTK 204
Query: 788 MYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGE 964
+++ GG A DRF ++++C D W PT P G +HSA
Sbjct: 205 LFIHGGLAGDRF-----YDDLHC-----IDISDMKWQKLNPTGAAPAGCAAHSAVAMGKH 254
Query: 965 LYIFGG 982
+YIFGG
Sbjct: 255 VYIFGG 260
Score = 78.2 bits (191), Expect = 1e-14
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
Frame = +2
Query: 287 RVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTK----LPPVRPATRGQAPVVPYMRYGH 454
R++ FGG + L+ + N + WT PP P T +
Sbjct: 100 RIWVFGGANQSGNRNCLQ-----VLNPETRTWTTPEVTSPPPSPRT-----------FHT 143
Query: 455 STVLIDDTVFLWGGRNDTEGACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACVL 622
S+ I + ++++GG GA V L+ FD NT WS P G P R GH
Sbjct: 144 SSAAIGNQLYVFGGGE--RGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAA 201
Query: 623 GKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFG 802
G ++I GG D F +D+H +D S M W + G HSA +G H+Y+FG
Sbjct: 202 GTKLFIHGGL--AGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFG 259
Query: 803 GRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 943
G P + + +Y + T + W +LP GR HS
Sbjct: 260 GMT----PAGALDTMY-----QYHTEEQHWTLLKFDTLLPPGRLDHS 297
Score = 68.2 bits (165), Expect = 1e-11
Identities = 45/159 (28%), Positives = 76/159 (47%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 427
PR + ++ A+G+++Y FGG G + ++ +H+F+A +L W+ +P T G
Sbjct: 138 PRTFHTSSAAIGNQLYVFGGGERGA--QPVQDTKLHVFDANTLTWS-----QPETLGNP- 189
Query: 428 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 607
P R+GH V +F+ GG + + L+ D++ KW G P H
Sbjct: 190 --PSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAH 246
Query: 608 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI 724
SA +GK +YIFGG + +++ T WTL+
Sbjct: 247 SAVAMGKHVYIFGGMTPAGAL--DTMYQYHTEEQHWTLL 283
>ref|NP_001167624.1| rab9 effector protein with kelch motifs isoform b [Homo sapiens].
Length = 321
Score = 88.2 bits (217), Expect = 1e-17
Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 10/193 (5%)
Frame = +2
Query: 434 PYMRYGHSTVLIDDT-------VFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPG 592
P R GHS + VF+ GG N +V + D+ T W+TP V P
Sbjct: 28 PCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDV-HTMDLETRTWTTPEVTSPPPS 86
Query: 593 ARDGH-SACVLGKTMYIFGGYEQLADCFSND-IHKLDTSTMTWTLICTKGNPARWRDFHS 766
R H S+ +G +Y+FGG E+ A + +H D +T+TW+ T GNP R H
Sbjct: 87 PRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHV 146
Query: 767 ATMLGNHMYVFGGRA-DRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHS 943
G +++ GG A DRF ++++C D W PT P G +HS
Sbjct: 147 MVAAGTKLFIHGGLAGDRF-----YDDLHC-----IDISDMKWQKLNPTGAAPAGCAAHS 196
Query: 944 AFGYNGELYIFGG 982
A +YIFGG
Sbjct: 197 AVAMGKHVYIFGG 209
Score = 79.3 bits (194), Expect = 6e-15
Identities = 61/207 (29%), Positives = 86/207 (41%), Gaps = 8/207 (3%)
Frame = +2
Query: 347 DVHIFNAVSLRWTK----LPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEG 514
DVH + + WT PP P T + S+ I + ++++GG G
Sbjct: 64 DVHTMDLETRTWTTPEVTSPPPSPRT-----------FHTSSAAIGNQLYVFGGGE--RG 110
Query: 515 ACNV----LYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSND 682
A V L+ FD NT WS P G P R GH G ++I GG D F +D
Sbjct: 111 AQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGL--AGDRFYDD 168
Query: 683 IHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRI 862
+H +D S M W + G HSA +G H+Y+FGG P + + +Y
Sbjct: 169 LHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMT----PAGALDTMY---- 220
Query: 863 RVFDTRTEAWLDCPPTPVLPEGRRSHS 943
+ T + W +LP GR HS
Sbjct: 221 -QYHTEEQHWTLLKFDTLLPPGRLDHS 246
Score = 68.2 bits (165), Expect = 1e-11
Identities = 45/159 (28%), Positives = 76/159 (47%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 427
PR + ++ A+G+++Y FGG G + ++ +H+F+A +L W+ +P T G
Sbjct: 87 PRTFHTSSAAIGNQLYVFGGGERGA--QPVQDTKLHVFDANTLTWS-----QPETLGNP- 138
Query: 428 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 607
P R+GH V +F+ GG + + L+ D++ KW G P H
Sbjct: 139 --PSPRHGHVMVAAGTKLFIHGGLAG-DRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAH 195
Query: 608 SACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI 724
SA +GK +YIFGG + +++ T WTL+
Sbjct: 196 SAVAMGKHVYIFGGMTPAGAL--DTMYQYHTEEQHWTLL 232
Score = 60.8 bits (146), Expect = 2e-09
Identities = 51/156 (32%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Frame = +2
Query: 557 WSTPRVAGTVPGARDGHSACVL--------GKTMYIFGGYEQLADCFSNDIHKLDTSTMT 712
W T V G P AR GHS L GK ++I GG + +D+H +D T T
Sbjct: 18 WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGK-VFIVGGAN--PNRSFSDVHTMDLETRT 74
Query: 713 WTLICTKGNPARWRDFH-SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 889
WT P R FH S+ +GN +YVFGG P + ++ VFD T
Sbjct: 75 WTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQP------VQDTKLHVFDANTLT 128
Query: 890 W-----LDCPPTPVLPEGRRSHSAFGYNGELYIFGG 982
W L PP+P R H +L+I GG
Sbjct: 129 WSQPETLGNPPSP-----RHGHVMVAAGTKLFIHGG 159
>ref|NP_005325.2| host cell factor 1 [Homo sapiens].
Length = 2035
Score = 85.9 bits (211), Expect = 6e-17
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Frame = +2
Query: 416 GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGA 595
G + VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P
Sbjct: 24 GWSGPVPRPRHGHRAVAIKELIVVFGGGN--EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
Query: 596 RDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK----GNPARWRDFH 763
+ G + +FGG + +SND+++L S W + K G P R H
Sbjct: 82 CAAYGFVCDGTRLLVFGGMVEYGK-YSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGH 140
Query: 764 SATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPT-PVLPEG 928
S +++GN Y+FGG A+ +N Y N + + + R AW D P T VLP
Sbjct: 141 SFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAW-DIPITYGVLPPP 199
Query: 929 RRSHSAFGY------NGELYIFGG 982
R SH+A Y +L I+GG
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG 223
Score = 79.7 bits (195), Expect = 4e-15
Identities = 76/263 (28%), Positives = 103/263 (39%), Gaps = 26/263 (9%)
Frame = +2
Query: 272 VAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYG 451
V G R+ FGG Y D++ A W +L P + P P R G
Sbjct: 88 VCDGTRLLVFGGMVEYGKYSN----DLYELQASRWEWKRLKAKTP--KNGPPPCP--RLG 139
Query: 452 HSTVLIDDTVFLWGG-RNDTEGA-------CNVLYAFDVNTHK----WSTPRVAGTVPGA 595
HS L+ + +L+GG ND+E N LY ++ W P G +P
Sbjct: 140 HSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199
Query: 596 RDGHSACVLGKT------MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRD 757
R+ H+A V + + I+GG ++ C D+ LD T+TW G R
Sbjct: 200 RESHTAVVYTEKDNKKSKLVIYGG---MSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRS 256
Query: 758 FHSATMLGNHMYVFGG-----RADRFGPFHSNNEIYCNRIRVFDTRTEAW---LDCPPTP 913
HSAT +GN MYVFGG D H N + + T AW L
Sbjct: 257 LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLED 316
Query: 914 VLPEGRRSHSAFGYNGELYIFGG 982
+P R H A N LYI+ G
Sbjct: 317 NIPRARAGHCAVAINTRLYIWSG 339
Score = 55.5 bits (132), Expect = 9e-08
Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVV 433
R H AVA+ + FGG G E +H++N + +W PA RG P
Sbjct: 33 RHGHRAVAIKELIVVFGGGNEGIVDE------LHVYNTATNQW-----FIPAVRGDIPP- 80
Query: 434 PYMRYGHSTVLIDDT-VFLWGGRNDTEGACNVLYAFDVNTHKWS-----TPRVAGTVPGA 595
YG + D T + ++GG + N LY + +W TP+ G P
Sbjct: 81 GCAAYGF---VCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPK-NGPPPCP 136
Query: 596 RDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD----TSTMTWTLICTKGNP 742
R GHS ++G Y+FGG ++ + ND++ L+ + + W + T G
Sbjct: 137 RLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
Query: 743 ARWRDFHSATMLG------NHMYVFGGRAD-RFGPFHSNNEIYCNRIRVFDTRTEAWLDC 901
R+ H+A + + + ++GG + R G + D T W
Sbjct: 197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWT-----------LDIDTLTWNKP 245
Query: 902 PPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ V P R HSA ++Y+FGG+
Sbjct: 246 SLSGVAPLPRSLHSATTIGNKMYVFGGW 273
>ref|NP_055130.1| kelch domain-containing protein 2 [Homo sapiens].
Length = 406
Score = 82.8 bits (203), Expect = 5e-16
Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 31/275 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGE-----DYETLRQIDVHIFNAVSLRWTKLPPVRPATRG 418
R H AV+ G ++ +GGY S + D+ R+ ++ I+N + RW K+ T G
Sbjct: 32 RSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPRE-ELWIYNMETGRWKKIN-----TEG 85
Query: 419 QAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH----KWSTPRVAGTV 586
P P M G V +D ++L+GG + + G N Y D + +W G
Sbjct: 86 DVP--PSMS-GSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLQWERIDCQGIP 141
Query: 587 PGARDGHSACVLGKTMYIFGGYEQLADC---------------------FSNDIHKLDTS 703
P ++D V + FGGY L + +++ +H LDT
Sbjct: 142 PSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTE 201
Query: 704 TMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRT 883
T TW+ T G R H+ +GN +VFGGR + N + + T
Sbjct: 202 TFTWSQPITTGKAPSPRAAHACATVGNRGFVFGGR---------YRDARMNDLHYLNLDT 252
Query: 884 EAWLDCPPTPVLPEGRRSHSAFGYNGE-LYIFGGY 985
W + P + P GR HS + + L++FGG+
Sbjct: 253 WEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGGF 287
Score = 63.5 bits (153), Expect = 3e-10
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 29/229 (12%)
Frame = +2
Query: 434 PYMRYGHSTVLIDDTVFLWGG--RNDTEGACNV------LYAFDVNTHKWSTPRVAGTVP 589
P R GH V +F+WGG N G + L+ +++ T +W G VP
Sbjct: 29 PAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWIYNMETGRWKKINTEGDVP 88
Query: 590 GARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTST----MTWTLICTKGNPARWRD 757
+ G A + + +Y+FGG+ + +N + LD+ + + W I +G P +D
Sbjct: 89 PSMSGSCAVCVDRVLYLFGGHHSRGN--TNKFYMLDSRSTDRVLQWERIDCQGIPPSSKD 146
Query: 758 FHSATMLGNHMYVFGGRA----DR-FGPFHSNNEIYCN---------RIRVFDTRTEAWL 895
+ N + FGG D+ G F + + N + + DT T W
Sbjct: 147 KLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFTWS 206
Query: 896 DCPPTPVLPEGRRSHSAFGYNGELYIFGG--YNARLN-RHFMISEV*PW 1033
T P R +H+ ++FGG +AR+N H++ + W
Sbjct: 207 QPITTGKAPSPRAAHACATVGNRGFVFGGRYRDARMNDLHYLNLDTWEW 255
>ref|NP_997186.1| attractin-like protein 1 precursor [Homo sapiens].
Length = 1379
Score = 80.9 bits (198), Expect = 2e-15
Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 13/270 (4%)
Frame = +2
Query: 245 GP-RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW-TKLPPVRPATRG 418
GP +R H+ ++ +GG D ++ +FN S W TK P V G
Sbjct: 351 GPLQRYGHSLALYQENIFMYGGRIETNDGNVTDEL--WVFNIHSQSWSTKTPTV--LGHG 406
Query: 419 QAPVVPYMRYGHSTVLI-----DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
Q Y GHS ++ D + + G + G + + + ++++ W P G
Sbjct: 407 QQ----YAVEGHSAHIMELDSRDVVMIIIFGYSAIYGYTSSIQEYHISSNTWLVPETKGA 462
Query: 584 VPGARDGHSACV--LGKTMYIFGGYEQLADC---FSNDIHKLDTSTMTWTLICTKGNPAR 748
+ GH++ + K++Y+ GGY+ L +D++K + +T TWT++ G
Sbjct: 463 IVQGGYGHTSVYDEITKSIYVHGGYKALPGNKYGLVDDLYKYEVNTKTWTILKESGFA-- 520
Query: 749 WRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCP-PTPVLPE 925
R HSA ++ M +FGG + + + +D + W P P
Sbjct: 521 -RYLHSAVLINGAMLIFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWKILPKPNLHRDV 579
Query: 926 GRRSHSAFGYNGELYIFGGYNARLNRHFMI 1015
R HSA NG +YIFGG+++ L ++
Sbjct: 580 NRFGHSAVVINGSMYIFGGFSSVLLNDILV 609
>ref|NP_037452.1| host cell factor 2 [Homo sapiens].
Length = 792
Score = 80.5 bits (197), Expect = 2e-15
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 15/205 (7%)
Frame = +2
Query: 431 VPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHS 610
VP R+GH V I + + ++GG N EG + L+ ++ T++W P V G +P H
Sbjct: 19 VPRARHGHRAVAIRELMIIFGGGN--EGIADELHVYNTATNQWFLPAVRGDIPPGCAAHG 76
Query: 611 ACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLI----CTKGNPARWRDFHSATML 778
G + +FGG + +SN++++L S W + G P R HS ++
Sbjct: 77 FVCDGTRILVFGGMVEYGR-YSNELYELQASRWLWKKVKPHPPPSGLPPCPRLGHSFSLY 135
Query: 779 GNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTR----TEAWLDCPPTPVLPEGRRSHSA 946
GN Y+FGG A+ ++N Y N + + W V+P R SH+A
Sbjct: 136 GNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGVVPSPRESHTA 195
Query: 947 FGY------NGELYIFGGY-NARLN 1000
Y + ++Y+FGG ARL+
Sbjct: 196 VIYCKKDSGSPKMYVFGGMCGARLD 220
Score = 67.0 bits (162), Expect = 3e-11
Identities = 72/285 (25%), Positives = 110/285 (38%), Gaps = 25/285 (8%)
Frame = +2
Query: 206 AQGMLRWT-VHLEGGP---RRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVS 373
A +L W V GP R H AVA+ + FGG G E +H++N +
Sbjct: 3 APSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADE------LHVYNTAT 56
Query: 374 LRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTH 553
+W PA RG +P H V + ++GG + N LY +
Sbjct: 57 NQW-----FLPAVRGD---IPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRW 108
Query: 554 KWST----PRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADC-------FSNDIHKLD- 697
W P +G P R GHS + G Y+FGG ++ + ND ++L+
Sbjct: 109 LWKKVKPHPPPSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELEL 168
Query: 698 ---TSTMTWTLICTKGNPARWRDFHSATML------GNHMYVFGGRADRFGPFHSNNEIY 850
+ + W++ TKG R+ H+A + MYVFGG
Sbjct: 169 QHGSGVVGWSIPVTKGVVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGA----------R 218
Query: 851 CNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGY 985
+ + D T +W +P R H+A ++YIFGG+
Sbjct: 219 LDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGW 263
Score = 65.5 bits (158), Expect = 8e-11
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 28/248 (11%)
Frame = +2
Query: 254 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVR----PATRGQ 421
R+ H+ G++ Y FGG + E ++ + ++ + L V P T+G
Sbjct: 127 RLGHSFSLYGNKCYLFGGLAN-ESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKG- 184
Query: 422 APVVPYMRYGHSTVLI------DDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGT 583
VVP R H+ V+ ++++GG + L+ D+ T WS P GT
Sbjct: 185 --VVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGAR--LDDLWQLDLETMSWSKPETKGT 240
Query: 584 VPGARDGHSACVLGKTMYIFGGY---------EQLADC---FSNDIHKLDTSTMTWTLIC 727
VP R H+A V+G MYIFGG+ DC ++ L+ T WT +
Sbjct: 241 VPLPRSLHTASVIGNKMYIFGGWVPHKGENTETSPHDCEWRCTSSFSYLNLDTTEWTTLV 300
Query: 728 T------KGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEA 889
+ K + R R H A +G +Y + GR D + N+++ C + DT
Sbjct: 301 SDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGR-DGYKK-ALNSQVCCKDLWYLDT---- 354
Query: 890 WLDCPPTP 913
+ PP P
Sbjct: 355 --EKPPAP 360
>ref|NP_055812.1| kelch domain-containing protein 10 [Homo sapiens].
Length = 442
Score = 73.9 bits (180), Expect = 2e-13
Identities = 68/271 (25%), Positives = 104/271 (38%), Gaps = 21/271 (7%)
Frame = +2
Query: 248 PRRVNHAAVAVGHRVYSFGGYC---------SGEDYETLRQI-DVHIFNAVSLRWTKLPP 397
P R H VA +Y FGGY EDY R++ H V W ++
Sbjct: 90 PARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGV---WHQM-- 144
Query: 398 VRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNV--LYAFDVNTHKWSTPR 571
G +P S VL + + ++GG G N ++ +V +W+
Sbjct: 145 ------GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS 198
Query: 572 VAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPA-- 745
G P G + ++ ++Y+FGG +S D+HKLD +T WT +
Sbjct: 199 CRGKKPSRIYGQAMAIINGSLYVFGG--TTGYIYSTDLHKLDLNTREWTQLKPNNLSCDL 256
Query: 746 ---RWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPV 916
R+R H G +Y+ GG S N+I ++ T AW + P
Sbjct: 257 PEERYR--HEIAHDGQRIYILGGGT-------SWTAYSLNKIHAYNLETNAWEEIATKPH 307
Query: 917 ----LPEGRRSHSAFGYNGELYIFGGYNARL 997
P RR HS +++I GGYN +
Sbjct: 308 EKIGFPAARRCHSCVQIKNDVFICGGYNGEV 338
Score = 66.6 bits (161), Expect = 4e-11
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 9/243 (3%)
Frame = +2
Query: 281 GHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHST 460
G+ + FGG +G + DVH+ N RW L + RG+ P YG +
Sbjct: 163 GNNLLVFGG--TGIPFGESNGNDVHVCNVKYKRWALL-----SCRGKKPS---RIYGQAM 212
Query: 461 VLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPR---VAGTVPGARDGHSACVLGKT 631
+I+ +++++GG + + L+ D+NT +W+ + ++ +P R H G+
Sbjct: 213 AIINGSLYVFGGTTGYIYSTD-LHKLDLNTREWTQLKPNNLSCDLPEERYRHEIAHDGQR 271
Query: 632 MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTK-----GNPARWRDFHSATMLGNHMYV 796
+YI GG N IH + T W I TK G PA R HS + N +++
Sbjct: 272 IYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKIGFPAA-RRCHSCVQIKNDVFI 330
Query: 797 FGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSH-SAFGYNGELYI 973
GG N E+ I + +T W+ P T +PE H +A G +YI
Sbjct: 331 CGG---------YNGEVILGDIWKLNLQTFQWVKLPAT--MPEPVYFHCAAVTPAGCMYI 379
Query: 974 FGG 982
GG
Sbjct: 380 HGG 382
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,671,429
Number of extensions: 1629937
Number of successful extensions: 8312
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 8058
Number of HSP's successfully gapped: 52
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012853
(1083 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 428 e-117
>Sscrofa_Chr07
|| Length = 134764511
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 732 agggcaaccccgcacgctggagggacttccactcggccaccatgctgggcaatcacatgt 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532794 agggcaaccccgcacgctggagggacttccactcggccaccatgctgggcaatcacatgt 43532853
Query: 792 atgtctttgggggccgtgccgaccgtttcgggccattccactccaacaatgagatttact 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532854 atgtctttgggggccgtgccgaccgtttcgggccattccactccaacaatgagatttact 43532913
Query: 852 gcaaccgcatccgcgtctttgacacgaggaccgaggcctggctggactgtccacccaccc 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532914 gcaaccgcatccgcgtctttgacacgaggaccgaggcctggctggactgtccacccaccc 43532973
Query: 912 cggtgctgcctgaggggcgccggagccactcagcct 947
||||||||||||||||||||||||||||||||||||
Sbjct: 43532974 cggtgctgcctgaggggcgccggagccactcagcct 43533009
Score = 389 bits (196), Expect = e-105
Identities = 210/217 (96%)
Strand = Plus / Plus
Query: 152 gcaggtagcagaggcagcaggccgtgccnnnnnnncatgtggctgtaaccagtggcccag 211
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 43531474 gcaggtagcagaggcagcaggccgtgccgggggggcatgtggctgtaaccagtggcccag 43531533
Query: 212 gggatgttacgctggacggtgcacctggagggcgggccccgcagggtgaaccatgctgca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531534 gggatgttacgctggacggtgcacctggagggcgggccccgcagggtgaaccatgctgca 43531593
Query: 272 gtggccgtcgggcacagggtgtactccttcgggggttactgctccggcgaggactatgag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531594 gtggccgtcgggcacagggtgtactccttcgggggttactgctccggcgaggactatgag 43531653
Query: 332 acgctgcgtcagattgatgtacacattttcaatgcag 368
|||||||||||||||||||||||||||||||||||||
Sbjct: 43531654 acgctgcgtcagattgatgtacacattttcaatgcag 43531690
Score = 357 bits (180), Expect = 8e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 366 cagtgtccttgcgttggacaaagctgcccccggtgaggcccgccacccgcgggcaggctc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531867 cagtgtccttgcgttggacaaagctgcccccggtgaggcccgccacccgcgggcaggctc 43531926
Query: 426 ctgtggtaccctacatgcggtacggacactccaccgtcctcatcgacgacacagtcttcc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531927 ctgtggtaccctacatgcggtacggacactccaccgtcctcatcgacgacacagtcttcc 43531986
Query: 486 tttggggtgggcggaatgacaccgaaggggcctgcaatgtgctttatgcttttgatgtca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43531987 tttggggtgggcggaatgacaccgaaggggcctgcaatgtgctttatgcttttgatgtca 43532046
Score = 238 bits (120), Expect = 5e-60
Identities = 123/124 (99%)
Strand = Plus / Plus
Query: 1 gagctgaatgcacgtgcgcttacagctgcccgccggaaggaccgagcctggctgtgttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43529190 gagctgaatgcacgtgcgcttacagctgcccgccggaaggaccgagcctggctgtgttta 43529249
Query: 61 tctcgttggagacccagtcggcagttggcgggcaacgggttcaaagctgcaggcagcgcg 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43529250 tctcgttggagatccagtcggcagttggcgggcaacgggttcaaagctgcaggcagcgcg 43529309
Query: 121 agga 124
||||
Sbjct: 43529310 agga 43529313
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 546 atactcacaaatggtccacaccccgagtagcaggaacagttcctggggcccgggacggac 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532202 atactcacaaatggtccacaccccgagtagcaggaacagttcctggggcccgggacggac 43532261
Query: 606 attcggcttgtgtcctgggcaagaccatgtatattttcgggggctacgagcagctgg 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532262 attcggcttgtgtcctgggcaagaccatgtatattttcgggggctacgagcagctgg 43532318
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 661 ggcggactgcttttccaatgacattcacaagctggataccagcaccatgacatggaccct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43532496 ggcggactgcttttccaatgacattcacaagctggataccagcaccatgacatggaccct 43532555
Query: 721 gatctgtacaaagg 734
||||||||||||||
Sbjct: 43532556 gatctgtacaaagg 43532569
Score = 143 bits (72), Expect = 2e-31
Identities = 86/88 (97%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 948 ttggctacaatggggagctgtacatttttggtggctataatgcaaggctgaatcggcact 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43533089 ttggctacaatggggagctgtacatttttggtggctataatgcaaggctgaatcggcact 43533148
Query: 1008 t-catgatctct-gaagtttaaccctgg 1033
| |||||||||| |||||||||||||||
Sbjct: 43533149 tccatgatctctggaagtttaaccctgg 43533176
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,023,112
Number of extensions: 107
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 7
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)