Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012864
(1209 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039767.1| ubiquinone biosynthesis protein COQ9, mitoch... 459 e-129
>ref|NP_001039767.1| ubiquinone biosynthesis protein COQ9, mitochondrial precursor [Bos
taurus].
Length = 319
Score = 459 bits (1182), Expect = e-129
Identities = 238/298 (79%), Positives = 248/298 (83%), Gaps = 1/298 (0%)
Frame = +3
Query: 87 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDXXXXXXXXXXXXH-SETRGAXXXXX 263
WRLLQLRC LPV RCR AL PRAF ASA+QLRS D SE +GA
Sbjct: 16 WRLLQLRC-LPVPRCRPALAPRAFRASAMQLRSLDQQKDQPPPSSSQQQSEAQGAEEPNP 74
Query: 264 XXXXXXXRYTDQXXXXXXXXXXXXQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTA 443
RYTDQ QLQHRILTAALEFVP HGWTAEAIAEGA+SLGLS+A
Sbjct: 75 EALRSPPRYTDQGGEEEEDYESEEQLQHRILTAALEFVPTHGWTAEAIAEGAQSLGLSSA 134
Query: 444 AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRML 623
AASMFG+DGSELILHFVTQCNARLT VLEEEQKLVQLGQAEKKKTD+FL+DAVETRLRML
Sbjct: 135 AASMFGDDGSELILHFVTQCNARLTHVLEEEQKLVQLGQAEKKKTDKFLRDAVETRLRML 194
Query: 624 IPYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 803
IPYI+HWPRA SILMLPHNIP L+LLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT
Sbjct: 195 IPYIQHWPRAFSILMLPHNIPPSLNLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 254
Query: 804 TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 977
TELVMMQDSSPDFEDTWRFLENRI+DAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL
Sbjct: 255 TELVMMQDSSPDFEDTWRFLENRISDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 312
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,297,641
Number of extensions: 1335480
Number of successful extensions: 5430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5395
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,207,134
Effective search space: 4233725932
Effective search space used: 4233725932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012864
(1209 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535284.2| PREDICTED: similar to CG30493-PB isoform 1 [Can... 469 e-132
Alignment gi|XP_862633.1| PREDICTED: similar to CG30493-PB isoform 2 [Can... 431 e-121
>ref|XP_535284.2| PREDICTED: similar to CG30493-PB isoform 1 [Canis familiaris].
Length = 320
Score = 469 bits (1207), Expect = e-132
Identities = 242/298 (81%), Positives = 254/298 (85%), Gaps = 1/298 (0%)
Frame = +3
Query: 87 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDXXXXXXXXXXXXH-SETRGAXXXXX 263
WRLLQLRC LPVSRC++A+V RAFHAS +QL+S+D SET A
Sbjct: 17 WRLLQLRC-LPVSRCQSAVVSRAFHASTMQLKSSDEQKQQPSQSFSQQQSETHEAEEPNP 75
Query: 264 XXXXXXXRYTDQXXXXXXXXXXXXQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTA 443
RYTDQ QLQHRILTAAL+FVPAHGWTAEAIAEGA+SLGLS+A
Sbjct: 76 ESSRSPPRYTDQGGEEEEDHESEEQLQHRILTAALDFVPAHGWTAEAIAEGAQSLGLSSA 135
Query: 444 AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRML 623
AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEK+KTDQFL+DAVETRLRML
Sbjct: 136 AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRML 195
Query: 624 IPYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 803
IPYIEHWPRALSILMLPHNIPS LSL+TSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT
Sbjct: 196 IPYIEHWPRALSILMLPHNIPSSLSLITSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 255
Query: 804 TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 977
TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL
Sbjct: 256 TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 313
>ref|XP_862633.1| PREDICTED: similar to CG30493-PB isoform 2 [Canis familiaris].
Length = 326
Score = 431 bits (1108), Expect = e-121
Identities = 221/277 (79%), Positives = 233/277 (84%), Gaps = 1/277 (0%)
Frame = +3
Query: 87 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDXXXXXXXXXXXXH-SETRGAXXXXX 263
WRLLQLRC LPVSRC++A+V RAFHAS +QL+S+D SET A
Sbjct: 17 WRLLQLRC-LPVSRCQSAVVSRAFHASTMQLKSSDEQKQQPSQSFSQQQSETHEAEEPNP 75
Query: 264 XXXXXXXRYTDQXXXXXXXXXXXXQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTA 443
RYTDQ QLQHRILTAAL+FVPAHGWTAEAIAEGA+SLGLS+A
Sbjct: 76 ESSRSPPRYTDQGGEEEEDHESEEQLQHRILTAALDFVPAHGWTAEAIAEGAQSLGLSSA 135
Query: 444 AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRML 623
AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEK+KTDQFL+DAVETRLRML
Sbjct: 136 AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRML 195
Query: 624 IPYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 803
IPYIEHWPRALSILMLPHNIPS LSL+TSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT
Sbjct: 196 IPYIEHWPRALSILMLPHNIPSSLSLITSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 255
Query: 804 TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQV 914
TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQV
Sbjct: 256 TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQV 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,105,911
Number of extensions: 1369846
Number of successful extensions: 5797
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5768
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 298
Effective length of database: 15,374,224
Effective search space: 4581518752
Effective search space used: 4581518752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012864
(1209 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355850.1| PREDICTED: ubiquinone biosynthesis protein C... 510 e-145
>ref|XP_003355850.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Sus scrofa].
Length = 317
Score = 510 bits (1314), Expect = e-145
Identities = 261/297 (87%), Positives = 261/297 (87%)
Frame = +3
Query: 87 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDXXXXXXXXXXXXHSETRGAXXXXXX 266
WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTD HSETRGA
Sbjct: 14 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDQQKQQPLPSSQQHSETRGAEEPSPE 73
Query: 267 XXXXXXRYTDQXXXXXXXXXXXXQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTAA 446
RYTDQ QLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTAA
Sbjct: 74 SSHSPPRYTDQGGEEEEGYESEEQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTAA 133
Query: 447 ASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRMLI 626
ASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRMLI
Sbjct: 134 ASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRMLI 193
Query: 627 PYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTT 806
PYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTT
Sbjct: 194 PYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTT 253
Query: 807 ELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 977
ELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL
Sbjct: 254 ELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 310
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,864,765
Number of extensions: 861784
Number of successful extensions: 3683
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3664
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,829,335
Effective search space: 2666459170
Effective search space used: 2666459170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012864
(1209 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080728.1| ubiquinone biosynthesis protein COQ9, mitochond... 457 e-129
Alignment gi|XP_923133.4| PREDICTED: ubiquinone biosynthesis protein COQ9... 130 2e-30
>ref|NP_080728.1| ubiquinone biosynthesis protein COQ9, mitochondrial precursor [Mus
musculus].
Length = 313
Score = 457 bits (1176), Expect = e-129
Identities = 236/297 (79%), Positives = 248/297 (83%)
Frame = +3
Query: 87 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDXXXXXXXXXXXXHSETRGAXXXXXX 266
WRLLQLRC LPV+RCR ALVPRAFH + S + HSET+G
Sbjct: 16 WRLLQLRC-LPVARCRPALVPRAFHTAVGFRSSEEQKQQPPHSSSQQHSETQGPEFSRPP 74
Query: 267 XXXXXXRYTDQXXXXXXXXXXXXQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTAA 446
RYTDQ QLQHRILTAALEFVPAHGWTAEAIAEGA+SLGLS+AA
Sbjct: 75 P-----RYTDQSGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSAA 129
Query: 447 ASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRMLI 626
ASMFG+DGSELILHFVTQCNARL +VLEEEQKLVQLGQAEK+KTDQFL+DAVETRLRMLI
Sbjct: 130 ASMFGSDGSELILHFVTQCNARLNQVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLI 189
Query: 627 PYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTT 806
PYIEHWPRALSIL+LPHNIP L+LLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTT
Sbjct: 190 PYIEHWPRALSILLLPHNIPPSLNLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNTT 249
Query: 807 ELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 977
ELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL
Sbjct: 250 ELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 306
>ref|XP_923133.4| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Mus musculus].
Length = 117
Score = 130 bits (327), Expect = 2e-30
Identities = 65/82 (79%), Positives = 71/82 (86%)
Frame = +3
Query: 453 MFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRMLIPY 632
MFG+DGSELILHFVTQCNARL +VLEEEQKLVQLGQAEK+KTDQFL+DAVETRLRMLIPY
Sbjct: 1 MFGSDGSELILHFVTQCNARLNQVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPY 60
Query: 633 IEHWPRALSILMLPHNIPSGLS 698
IEHWPR S L + +G S
Sbjct: 61 IEHWPRVQSPAKLQSSSNNGPS 82
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,990,370
Number of extensions: 1122447
Number of successful extensions: 4332
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4280
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 299
Effective length of database: 12,493,815
Effective search space: 3735650685
Effective search space used: 3735650685
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012864
(1209 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064708.1| ubiquinone biosynthesis protein COQ9, mitochond... 475 e-134
>ref|NP_064708.1| ubiquinone biosynthesis protein COQ9, mitochondrial precursor [Homo
sapiens].
Length = 318
Score = 475 bits (1222), Expect = e-134
Identities = 245/298 (82%), Positives = 254/298 (85%), Gaps = 1/298 (0%)
Frame = +3
Query: 87 WRLLQLRCRLPVSRCRAALVPRAFHASAVQLRSTDXXXXXXXXXXXX-HSETRGAXXXXX 263
WRLLQLRC LPV+RCR ALVPRAFHASAV LRS+D HSET+GA
Sbjct: 15 WRLLQLRC-LPVARCRQALVPRAFHASAVGLRSSDEQKQQPPNSFSQQHSETQGAEKPDP 73
Query: 264 XXXXXXXRYTDQXXXXXXXXXXXXQLQHRILTAALEFVPAHGWTAEAIAEGAKSLGLSTA 443
RYTDQ QLQHRILTAALEFVPAHGWTAEAIAEGA+SLGLS+A
Sbjct: 74 ESSHSPPRYTDQGGEEEEDYESEEQLQHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSA 133
Query: 444 AASMFGNDGSELILHFVTQCNARLTRVLEEEQKLVQLGQAEKKKTDQFLKDAVETRLRML 623
AASMFG DGSELILHFVTQCN RLTRVLEEEQKLVQLGQAEK+KTDQFL+DAVETRLRML
Sbjct: 134 AASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRML 193
Query: 624 IPYIEHWPRALSILMLPHNIPSGLSLLTSMVDDMWHYAGDQSTDFNWYTRRAVLAGIYNT 803
IPYIEHWPRALSILMLPHNIPS LSLLTSMVDDMWHYAGDQSTDFNWYTRRA+LA IYNT
Sbjct: 194 IPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQSTDFNWYTRRAMLAAIYNT 253
Query: 804 TELVMMQDSSPDFEDTWRFLENRINDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 977
TELVMMQDSSPDFEDTWRFLENR+NDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL
Sbjct: 254 TELVMMQDSSPDFEDTWRFLENRVNDAMNMGHTAKQVKSTGEALVQGLMGAAVTLKNL 311
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,273,329
Number of extensions: 1342405
Number of successful extensions: 5230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5186
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,835,944
Effective search space: 4421111312
Effective search space used: 4421111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012864
(1209 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 464 e-128
>Sscrofa_Chr06
|| Length = 157765593
Score = 464 bits (234), Expect = e-128
Identities = 244/246 (99%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 965 gctcaagaactta-caggcctaaaccagcgtcggtgagcaagcagggacgtaagctagag 1023
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17380361 gctcaagaacttaacaggcctaaaccagcgtcggtgagcaagcagggacgtaagctagag 17380420
Query: 1024 tgcccagaagaaaacccgtggatatatttaaggggctttgaaatgtatgaggtgccgtcc 1083
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17380421 tgcccagaagaaaacccgtggatatatttaaagggctttgaaatgtatgaggtgccgtcc 17380480
Query: 1084 acggaacagggcgttaacgagaacacacagaaggatctatcatactaccacagcctcctg 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17380481 acggaacagggcgttaacgagaacacacagaaggatctatcatactaccacagcctcctg 17380540
Query: 1144 caaaccagggcactggaggatacagtcagagcctggggttgggacacttcagttcataac 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17380541 caaaccagggcactggaggatacagtcagagcctggggttgggacacttcagttcataac 17380600
Query: 1204 accagg 1209
||||||
Sbjct: 17380601 accagg 17380606
Score = 337 bits (170), Expect = 8e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 120 gtgtcccgctgccgagcagccctggtgccacgtgccttccatgcttcagccgtgcagctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17367137 gtgtcccgctgccgagcagccctggtgccacgtgccttccatgcttcagccgtgcagctg 17367196
Query: 180 agatccacagatcagcagaagcagcaacctctgccctcttctcagcaacattctgagaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17367197 agatccacagatcagcagaagcagcaacctctgccctcttctcagcaacattctgagaca 17367256
Query: 240 cggggtgctgaagaacccagtccggagtcttctcattcaccccccaggta 289
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17367257 cggggtgctgaagaacccagtccggagtcttctcattcaccccccaggta 17367306
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 756 tttaactggtacacccgccgtgcagtgctggctggcatctacaatacgacagagctggtg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17379551 tttaactggtacacccgccgtgcagtgctggctggcatctacaatacgacagagctggtg 17379610
Query: 816 atgatgcaggactcctccccagactttgaggacacgtggcgcttcctggaaaaccggatt 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17379611 atgatgcaggactcctccccagactttgaggacacgtggcgcttcctggaaaaccggatt 17379670
Query: 876 aacgatgcaatgaacatgggccacactgccaagcaggt 913
||||||||||||||||||||||||||||||||||||||
Sbjct: 17379671 aacgatgcaatgaacatgggccacactgccaagcaggt 17379708
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 421 agtctctgggtctctccaccgcggccgccagcatgtttgggaatgatggcagtgagctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17376062 agtctctgggtctctccaccgcggccgccagcatgtttgggaatgatggcagtgagctga 17376121
Query: 481 tactgcattttgtgacccagtgcaacgcccggctcacccgtgtgctggaagaggagcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17376122 tactgcattttgtgacccagtgcaacgcccggctcacccgtgtgctggaagaggagcaga 17376181
Query: 541 agctggttcagctgggccaggcagag 566
||||||||||||||||||||||||||
Sbjct: 17376182 agctggttcagctgggccaggcagag 17376207
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 284 caggtacacagaccagggcggtgaggaggaagagggctacgagagcgaggagcagctgca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17369410 caggtacacagaccagggcggtgaggaggaagagggctacgagagcgaggagcagctgca 17369469
Query: 344 acaccgcatcctgacggcagccctggagttcgtgcctgcccatgggtggacagcagaggc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17369470 acaccgcatcctgacggcagccctggagttcgtgcctgcccatgggtggacagcagaggc 17369529
Query: 404 aattgcggaaggagccaag 422
|||||||||||||||||||
Sbjct: 17369530 aattgcggaaggagccaag 17369548
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 ctccctgctgcccgttctgtcgcgtcggcggcgtgcccgcttccaacatggcggcggcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17363394 ctccctgctgcccgttctgtcgcgtcggcggcgtgcccgcttccaacatggcggcggcgg 17363453
Query: 61 tgtccggcgcggtcgcccgggcgggctggaggctcctgcagctgcggtgccgcctgcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17363454 tgtccggcgcggtcgcccgggcgggctggaggctcctgcagctgcggtgccgcctgcccg 17363513
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 650 ggccctcagcatcctcatgctccctcacaacatcccgtccggcctgagcctgctcaccag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17378167 ggccctcagcatcctcatgctccctcacaacatcccgtccggcctgagcctgctcaccag 17378226
Query: 710 catggtggacgacatgtggcattacgctggggaccagtccacggat 755
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17378227 catggtggacgacatgtggcattacgctggggaccagtccacggat 17378272
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 566 gaagaagaagacagaccagttcctgaaggatgctgtagaaaccagactgagaatgctgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17376467 gaagaagaagacagaccagttcctgaaggatgctgtagaaaccagactgagaatgctgat 17376526
Query: 626 cccgtacattgagcattggccccggg 651
||||||||||||||||||||||||||
Sbjct: 17376527 cccgtacattgagcattggccccggg 17376552
Score = 111 bits (56), Expect = 9e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 910 aggtgaagtccaccggagaggcactggtgcaaggactcatgggtgcggcggtgacg 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17380032 aggtgaagtccaccggagaggcactggtgcaaggactcatgggtgcggcggtgacg 17380087
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,132,455
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 9
Length of query: 1209
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1188
Effective length of database: 2,808,413,156
Effective search space: 3336394829328
Effective search space used: 3336394829328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)