Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012865
(1076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032546.1| histone H2B type 1 [Bos taurus]. 178 8e-45
Alignment gi|NP_001039711.1| histone 1, H2bi [Bos taurus]. 178 8e-45
Alignment gi|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
Alignment gi|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
Alignment gi|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
Alignment gi|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
Alignment gi|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
Alignment gi|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
Alignment gi|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus]. 178 8e-45
Alignment gi|XP_002697513.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 8e-45
>ref|NP_001032546.1| histone H2B type 1 [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001039711.1| histone 1, H2bi [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697513.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 8e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,997,228
Number of extensions: 943952
Number of successful extensions: 3638
Number of sequences better than 1.0e-05: 148
Number of HSP's gapped: 3626
Number of HSP's successfully gapped: 150
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012865
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012865
(1076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545401.2| PREDICTED: similar to H2B histone family, membe... 180 2e-45
Alignment gi|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform ... 178 9e-45
Alignment gi|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform ... 178 9e-45
Alignment gi|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 9e-45
Alignment gi|XP_854227.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 9e-45
Alignment gi|XP_545398.2| PREDICTED: similar to Histone H2B 291B [Canis f... 178 9e-45
Alignment gi|XP_853860.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 9e-45
Alignment gi|XP_545418.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 9e-45
Alignment gi|XP_545374.2| PREDICTED: similar to testis-specific histone 2... 178 9e-45
Alignment gi|XP_849716.1| PREDICTED: similar to histone 1, H2bh isoform 1... 178 9e-45
>ref|XP_545401.2| PREDICTED: similar to H2B histone family, member F [Canis
familiaris].
Length = 170
Score = 180 bits (456), Expect = 2e-45
Identities = 98/112 (87%), Positives = 100/112 (89%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 59 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 118
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK*TCQVSIFTLTPKALFRATHM 474
QTAVRLLLPGELAKHAVSEGTKAVTKYTS K T L +AL RATHM
Sbjct: 119 QTAVRLLLPGELAKHAVSEGTKAVTKYTSFKQTPVQLRQRL--QALLRATHM 168
>ref|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform 1 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_854227.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_545398.2| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_853860.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_545418.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_545374.2| PREDICTED: similar to testis-specific histone 2b [Canis
familiaris].
Length = 127
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 37 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 96
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 97 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 127
>ref|XP_849716.1| PREDICTED: similar to histone 1, H2bh isoform 1 [Canis familiaris].
Length = 113
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 23 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 82
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 83 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 113
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,437,730
Number of extensions: 968536
Number of successful extensions: 3409
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 3401
Number of HSP's successfully gapped: 40
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012865
(1076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356626.1| PREDICTED: histone H2B type 1-H-like [Sus sc... 178 5e-45
Alignment gi|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 5e-45
Alignment gi|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 178 5e-45
Alignment gi|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 178 5e-45
Alignment gi|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 5e-45
Alignment gi|XP_001928584.1| PREDICTED: histone H2B type 1-H-like [Sus sc... 178 5e-45
Alignment gi|XP_001927534.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 5e-45
Alignment gi|XP_001927519.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 5e-45
Alignment gi|XP_001927974.1| PREDICTED: histone H2B type 1-M-like [Sus sc... 178 5e-45
Alignment gi|XP_001927752.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 5e-45
>ref|XP_003356626.1| PREDICTED: histone H2B type 1-H-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001928584.1| PREDICTED: histone H2B type 1-H-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927534.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927519.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927974.1| PREDICTED: histone H2B type 1-M-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927752.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 5e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,759,782
Number of extensions: 604502
Number of successful extensions: 2205
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2203
Number of HSP's successfully gapped: 32
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012865
(1076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus]. 178 7e-45
Alignment gi|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus]. 178 7e-45
Alignment gi|NP_783597.2| histone H2B type 2-B [Mus musculus]. 178 7e-45
Alignment gi|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus]. 178 7e-45
Alignment gi|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus]. 178 7e-45
Alignment gi|NP_835507.1| histone H2B type 1-M [Mus musculus]. 178 7e-45
Alignment gi|NP_835504.1| histone H2B type 1-H [Mus musculus]. 178 7e-45
Alignment gi|NP_835509.2| histone H2B type 1-P [Mus musculus]. 176 4e-44
Alignment gi|NP_783595.1| histone H2B type 1-B [Mus musculus]. 176 4e-44
Alignment gi|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus]. 176 4e-44
>ref|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_783597.2| histone H2B type 2-B [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835507.1| histone H2B type 1-M [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835504.1| histone H2B type 1-H [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835509.2| histone H2B type 1-P [Mus musculus].
Length = 138
Score = 176 bits (445), Expect = 4e-44
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_783595.1| histone H2B type 1-B [Mus musculus].
Length = 126
Score = 176 bits (445), Expect = 4e-44
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus].
Length = 126
Score = 176 bits (445), Expect = 4e-44
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,397,015
Number of extensions: 827750
Number of successful extensions: 2827
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2820
Number of HSP's successfully gapped: 22
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012865
(1076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154806.1| histone H2B type 2-F isoform b [Homo sapiens]. 178 9e-45
Alignment gi|NP_001019770.1| histone H2B type 2-F isoform a [Homo sapiens]. 178 9e-45
Alignment gi|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 9e-45
Alignment gi|NP_003512.1| histone H2B type 1-M [Homo sapiens]. 178 9e-45
Alignment gi|NP_003511.1| histone H2B type 1-N [Homo sapiens]. 178 9e-45
Alignment gi|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 9e-45
Alignment gi|NP_619790.1| histone H2B type 1-D [Homo sapiens]. 178 9e-45
Alignment gi|NP_066407.1| histone H2B type 1-D [Homo sapiens]. 178 9e-45
Alignment gi|NP_003517.2| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 9e-45
Alignment gi|NP_003516.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 9e-45
>ref|NP_001154806.1| histone H2B type 2-F isoform b [Homo sapiens].
Length = 134
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001019770.1| histone H2B type 2-F isoform a [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003512.1| histone H2B type 1-M [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003511.1| histone H2B type 1-N [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_619790.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_066407.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003517.2| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003516.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 9e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 139 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 318
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 319 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 411
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,934,137
Number of extensions: 966119
Number of successful extensions: 3248
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3241
Number of HSP's successfully gapped: 22
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012865
(1076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 654 0.0
Sscrofa_Chr04 504 e-140
Sscrofa_Chr14 289 2e-75
gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 258 6e-66
Sscrofa_Chr18 153 2e-34
Sscrofa_ChrX 133 2e-28
gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 127 1e-26
gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 98 1e-17
Sscrofa_Chr06 78 1e-11
>Sscrofa_Chr07
|| Length = 134764511
Score = 654 bits (330), Expect = 0.0
Identities = 394/414 (95%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 55 gctcccgctccgaagaagggctccaagaaggcggttaccaaggcccagaaaaaggacggt 114
|||||||| ||||||||||| |||||||| ||||| || ||||| ||||| ||||| ||
Sbjct: 22052915 gctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaaggatggc 22052856
Query: 115 aagaagcgaaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052855 aagaagcgaaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaag 22052796
Query: 175 caggtccacccggacaccggcatctcgtccaaagccatgggcatcatgaactcctttgtc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052795 caggtccacccggacaccggcatctcgtccaaagccatgggcatcatgaactcctttgtc 22052736
Query: 235 aacgacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgc 294
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 22052735 aacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgc 22052676
Query: 295 tcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggggagctg 354
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 22052675 tcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggggagctg 22052616
Query: 355 gccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaaataa 414
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 22052615 gccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctccaaataa 22052556
Query: 415 acttgccaagtaagcatctttacactt-accccaaaggctcttttcagagccac 467
| ||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 22052555 atttgccaagtaagcatctttactgttaaccccaaaggctcttttaagagccac 22052502
Score = 581 bits (293), Expect = e-163
Identities = 356/377 (94%)
Strand = Plus / Plus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
|||||||||||||| ||||||||||| || || || |||||||||||||| || || |||
Sbjct: 23097502 atgcctgagccagctaagtccgctcctgcccccaaaaagggctccaagaaagcagtgacc 23097561
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 23097562 aaggcgcagaagaaggacggcaagaagcgcaagcgcagccgcaaggagagctactcggtg 23097621
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 23097622 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23097681
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 23097682 ggcatcatgaactcatttgtcaacgacatctttgagcgcatcgccggcgaggcctcgcgg 23097741
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23097742 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23097801
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 23097802 ctgctgctgcccggggagctggccaagcatgccgtgtctgagggcaccaaggctgtcacc 23097861
Query: 394 aagtacaccagctccaa 410
|||||||||||||||||
Sbjct: 23097862 aagtacaccagctccaa 23097878
Score = 581 bits (293), Expect = e-163
Identities = 356/377 (94%)
Strand = Plus / Plus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
||||||||||| | ||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 23110662 atgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgacc 23110721
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
||||| ||||| ||||| || |||||||| || ||||||||||||||||||||||| |||
Sbjct: 23110722 aaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtg 23110781
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 23110782 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23110841
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 23110842 ggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcgg 23110901
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110902 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23110961
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110962 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 23111021
Query: 394 aagtacaccagctccaa 410
|||||||||||||||||
Sbjct: 23111022 aagtacaccagctccaa 23111038
Score = 569 bits (287), Expect = e-159
Identities = 356/379 (93%)
Strand = Plus / Plus
Query: 29 ttaaaatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcgg 88
||||||||||||| |||||||| || ||||| || || || |||||||||||||| || |
Sbjct: 22089314 ttaaaatgcctgaaccagcgaaatctgctccagcccccaaaaagggctccaagaaagccg 22089373
Query: 89 ttaccaaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctact 148
| |||||||| ||||| || || || |||||||| |||||||||||||||||||||||||
Sbjct: 22089374 tgaccaaggcgcagaagaaagatggcaagaagcgcaagcgcagccgcaaggagagctact 22089433
Query: 149 ccgtgtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaag 208
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 22089434 ccgtgtacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaag 22089493
Query: 209 ccatgggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcct 268
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 22089494 ccatgggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcct 22089553
Query: 269 cgcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089554 cgcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccg 22089613
Query: 329 tgcgcctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctg 388
|||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 22089614 tgcggctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggctg 22089673
Query: 389 tcaccaagtacaccagctc 407
|||||||||||||||||||
Sbjct: 22089674 tcaccaagtacaccagctc 22089692
Score = 559 bits (282), Expect = e-156
Identities = 357/382 (93%)
Strand = Plus / Minus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
|||||||| ||||| ||||||||||| || || || || ||||||||||| || || ||
Sbjct: 23086255 atgcctgatccagctaagtccgctcctgcccccaaaaaaggctccaagaaagccgtgact 23086196
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 23086195 aaggcgcagaaaaaggacggcaagaagcgcaagcgcagccgcaaggagagctactcggtg 23086136
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 23086135 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23086076
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 23086075 ggcatcatgaactccttcgtcaacgacatctttgagcgtatcgcgggcgaggcctcgcgg 23086016
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086015 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23085956
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085955 ctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggctgtcacc 23085896
Query: 394 aagtacaccagctccaaataaa 415
||||||||||||||||| ||||
Sbjct: 23085895 aagtacaccagctccaagtaaa 23085874
Score = 557 bits (281), Expect = e-156
Identities = 353/377 (93%)
Strand = Plus / Minus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
|||||||||||||| || || || || || || ||||||||||||||||||||||| |||
Sbjct: 23174494 atgcctgagccagctaaatctgccccagccccaaagaagggctccaagaaggcggtgacc 23174435
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct: 23174434 aaggcgcagaagaaggacggcaagaagcgcaaacgcagccgcaaggagagctactcggtg 23174375
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 23174374 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaagccatg 23174315
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 23174314 ggcatcatgaattcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcgg 23174255
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23174254 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 23174195
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 23174194 ctgctgctgcccggggagctggccaagcatgccgtgtccgagggcaccaaggctgtcacc 23174135
Query: 394 aagtacaccagctccaa 410
|||||||| ||| ||||
Sbjct: 23174134 aagtacacaagcgccaa 23174118
Score = 537 bits (271), Expect = e-150
Identities = 357/386 (92%)
Strand = Plus / Minus
Query: 30 taaaatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggt 89
|||||||||||| ||| |||| || ||||| || |||||||||||||||||||| || ||
Sbjct: 22032354 taaaatgcctgaaccaacgaaatctgctccagccccgaagaagggctccaagaaagccgt 22032295
Query: 90 taccaaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactc 149
|||||||| |||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct: 22032294 gaccaaggcgcagaaaaaagatggcaagaagcgcaagcgcagccgcaaggagagctactc 22032235
Query: 150 cgtgtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagc 209
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 22032234 cgtgtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggc 22032175
Query: 210 catgggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctc 269
||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 22032174 catgggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggtgaggcctc 22032115
Query: 270 gcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgt 329
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22032114 gcggctggcgcattacaacaagcggtcgaccatcacgtcccgggagatccagacggccgt 22032055
Query: 330 gcgcctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgt 389
||| ||||||||||| || ||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 22032054 gcggctgctgctgcccggngagttggccaagcacgccgtgtctgagggcaccaaggccgt 22031995
Query: 390 caccaagtacaccagctccaaataaa 415
|||||||||||||||||||| ||||
Sbjct: 22031994 taccaagtacaccagctccaagtaaa 22031969
Score = 254 bits (128), Expect = 9e-65
Identities = 309/371 (83%), Gaps = 15/371 (4%)
Strand = Plus / Plus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
|||||||||||||| || || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 23188870 atgcctgagccagctaaatctgccccagctcc-aagaagggctccaagaaggcggtgacc 23188928
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
| ||| ||||| |||||||| |||||||| | |||||||||||||||||||||||| |||
Sbjct: 23188929 agggcgcagaagaaggacggcaagaagcgcaggcgcagccgcaaggagagctactcagtg 23188988
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
||||||||||||||||||||||||||| |||||||||| | ||| ||
Sbjct: 23188989 tacgtgtacaaggtgctgaagcaggtctacccggacac--------------aggccgtg 23189034
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
|||||||||||||| || || |||||||| ||||||||||| | |||||||| |||||
Sbjct: 23189035 ggcatcatgaactctttcgttaacgacatcgtcgagcgcatcacgggcgaggcatcgcgc 23189094
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
|||||||||||||| || ||||||||||| |||| | || ||| ||| || |||||||
Sbjct: 23189095 ctggcgcattacaaaaatcgctcgaccattacgttctcgggcatctagatggacgtgcgc 23189154
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
| |||||| || |||||| ||||||| || || ||||| |||||| ||||| |||||| |
Sbjct: 23189155 cagctgcttcccggggagatggccaaacatgctgtgtctgagggcgccaagcctgtcagc 23189214
Query: 394 aagtacaccag 404
|||||||||||
Sbjct: 23189215 aagtacaccag 23189225
Score = 250 bits (126), Expect = 1e-63
Identities = 240/278 (86%)
Strand = Plus / Minus
Query: 139 gagagctactccgtgtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatc 198
||||||||||| | ||| | ||||||||||||||||| || || || || || || |||
Sbjct: 21770604 gagagctactcaatctacatctacaaggtgctgaagcaagttcatcccgatacaggtatc 21770545
Query: 199 tcgtccaaagccatgggcatcatgaactcctttgtcaacgacattttcgagcgcatcgcc 258
|| || || |||||| |||||||||| || || |||| ||||| ||||||||||||||
Sbjct: 21770544 tcttcgaaggccatgagcatcatgaattctttcgtcactgacatcttcgagcgcatcgca 21770485
Query: 259 ggcgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatc 318
| ||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 21770484 agtgaggcgtcgcgcctggcacattacaacaagcgctccacgatcacgtcccgggagatc 21770425
Query: 319 cagacggccgtgcgcctgctgctgcctggggagctggccaagcacgccgtgtccgagggc 378
||||||||||||||| ||||| | || |||||| ||||||||||||| ||||||||||||
Sbjct: 21770424 cagacggccgtgcgcttgctgttaccaggggagttggccaagcacgcggtgtccgagggc 21770365
Query: 379 accaaggctgtcaccaagtacaccagctccaaataaac 416
|| ||||||||||||||||||||||||||||| |||||
Sbjct: 21770364 actaaggctgtcaccaagtacaccagctccaagtaaac 21770327
Score = 161 bits (81), Expect = 1e-36
Identities = 254/311 (81%), Gaps = 3/311 (0%)
Strand = Plus / Plus
Query: 160 tacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatgggcatc 219
||||||||||| ||||| || || || || ||||| || || ||||| |||||| |||||
Sbjct: 21765243 tacaaggtgcttaagcaagttcatccagataccggtatttcttccaaggccatgagcatc 21765302
Query: 220 atgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcggctggcg 279
||||| || ||||||| || || || ||||||||||| || || || ||||| ||||
Sbjct: 21765303 atgaattcgtttgtcactgatatctttgagcgcatcgcaggtgaagcatcgcgtttggca 21765362
Query: 280 cattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctg 339
|| |||| |||||| || || ||||| ||| | |||||||| ||||| ||||| || ||
Sbjct: 21765363 cactacagcaagcgttccactatcacttccagagagatccaaacggctgtgcgtctcttg 21765422
Query: 340 ctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtac 399
||||| || ||| |||||||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 21765423 ctgccgggagagttggccaagcatgcagtgtctgagggcaccaaagctgtcaccaagtat 21765482
Query: 400 accagctccaaataaacttgccaagtaagcatctttacact---taccccaaaggctctt 456
|| |||||||| |||||||||| ||||||| | ||| |||| || |||||||||||||
Sbjct: 21765483 actagctccaagtaaacttgccgagtaagcgtttttccacttaataacccaaaggctctt 21765542
Query: 457 ttcagagccac 467
|| ||||||||
Sbjct: 21765543 tttagagccac 21765553
Score = 71.9 bits (36), Expect = 7e-10
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 135 caaggagagctactccgtgtacgtgtacaaggtgctgaagcagg 178
||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 22094525 caaggagagctactccgtgtaggtgtacgaggtgctgaagcagg 22094482
>Sscrofa_Chr04
|| Length = 143465943
Score = 504 bits (254), Expect = e-140
Identities = 347/378 (91%)
Strand = Plus / Minus
Query: 33 aatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttac 92
||||||||||||||| || || |||||||| || ||||||||||| ||||| || || ||
Sbjct: 108549853 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 108549794
Query: 93 caaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgt 152
||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108549793 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108549734
Query: 153 gtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccat 212
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 108549733 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108549674
Query: 213 gggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcg 272
|||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||
Sbjct: 108549673 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108549614
Query: 273 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 332
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549613 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108549554
Query: 333 cctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcac 392
|||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 108549553 cctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcac 108549494
Query: 393 caagtacaccagctccaa 410
||||||||||||||||||
Sbjct: 108549493 caagtacaccagctccaa 108549476
Score = 504 bits (254), Expect = e-140
Identities = 347/378 (91%)
Strand = Plus / Minus
Query: 33 aatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttac 92
||||||||||||||| || || |||||||| || ||||||||||| ||||| || || ||
Sbjct: 108844655 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 108844596
Query: 93 caaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgt 152
||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108844595 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108844536
Query: 153 gtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccat 212
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 108844535 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108844476
Query: 213 gggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcg 272
|||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||
Sbjct: 108844475 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108844416
Query: 273 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 332
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844415 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108844356
Query: 333 cctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcac 392
|||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 108844355 cctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcac 108844296
Query: 393 caagtacaccagctccaa 410
||||||||||||||||||
Sbjct: 108844295 caagtacaccagctccaa 108844278
Score = 502 bits (253), Expect = e-139
Identities = 346/377 (91%)
Strand = Plus / Plus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
||||||||||| || |||||||| || || || ||||||||||| ||||| || || |||
Sbjct: 108524414 atgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcacc 108524473
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
|| |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108524474 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108524533
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 108524534 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108524593
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||
Sbjct: 108524594 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108524653
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524654 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108524713
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 108524714 ctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcacc 108524773
Query: 394 aagtacaccagctccaa 410
|||||||||||||||||
Sbjct: 108524774 aagtacaccagctccaa 108524790
Score = 502 bits (253), Expect = e-139
Identities = 346/377 (91%)
Strand = Plus / Plus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
||||||||||| || |||||||| || || || ||||||||||| ||||| || || |||
Sbjct: 108816869 atgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcacc 108816928
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
|| |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108816929 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108816988
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 108816989 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108817048
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||
Sbjct: 108817049 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108817108
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108817109 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108817168
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 108817169 ctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcacc 108817228
Query: 394 aagtacaccagctccaa 410
|||||||||||||||||
Sbjct: 108817229 aagtacaccagctccaa 108817245
Score = 502 bits (253), Expect = e-139
Identities = 346/377 (91%)
Strand = Plus / Minus
Query: 34 atgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggttacc 93
||||||||||| || |||||||| || || || ||||||||||| ||||| || || |||
Sbjct: 108824575 atgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcacc 108824516
Query: 94 aaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtg 153
|| |||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108824515 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108824456
Query: 154 tacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatg 213
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 108824455 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108824396
Query: 214 ggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcgg 273
||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||
Sbjct: 108824395 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108824336
Query: 274 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 333
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824335 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108824276
Query: 334 ctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 393
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 108824275 ctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcacc 108824216
Query: 394 aagtacaccagctccaa 410
|||||||||||||||||
Sbjct: 108824215 aagtacaccagctccaa 108824199
Score = 472 bits (238), Expect = e-130
Identities = 331/362 (91%)
Strand = Plus / Minus
Query: 49 aagtccgctcccgctccgaagaagggctccaagaaggcggttaccaaggcccagaaaaag 108
|||||||| || || || ||||||||||| ||||| || || ||||| |||||||| |||
Sbjct: 108532105 aagtccgccccggcgccaaagaagggctcgaagaaagccgtcaccaaagcccagaagaag 108532046
Query: 109 gacggtaagaagcgaaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtg 168
||||| | ||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 108532045 gacggcagaaagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtg 108531986
Query: 169 ctgaagcaggtccacccggacaccggcatctcgtccaaagccatgggcatcatgaactcc 228
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 108531985 ctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactcc 108531926
Query: 229 tttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaac 288
|| ||||||||||| |||||||||||||| ||||| || || || ||||| |||||||||
Sbjct: 108531925 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 108531866
Query: 289 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggg 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 108531865 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 108531806
Query: 349 gagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctcc 408
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 108531805 gagctggccaagcacgccgtgtccgagggcaccaaggcggtcaccaagtacaccagctcc 108531746
Query: 409 aa 410
||
Sbjct: 108531745 aa 108531744
Score = 379 bits (191), Expect = e-102
Identities = 281/311 (90%)
Strand = Plus / Minus
Query: 100 cagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagctactccgtgtacgtg 159
||||| ||||| || || ||||| ||||| ||||||||||| || ||||| ||||| ||
Sbjct: 108798219 cagaagaaggatggcaaaaagcgcaagcgaagccgcaaggaaagttactctgtgtatgta 108798160
Query: 160 tacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagccatgggcatc 219
||||| |||||||| ||||| || || |||||||||||||||||||| ||||||||||||
Sbjct: 108798159 tacaaagtgctgaaacaggttcatccagacaccggcatctcgtccaaggccatgggcatc 108798100
Query: 220 atgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggcctcgcggctggcg 279
||||||||||| ||||||||||| |||||||||||||| ||||| || || || |||||
Sbjct: 108798099 atgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggct 108798040
Query: 280 cattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108798039 cattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctg 108797980
Query: 340 ctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtac 399
||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 108797979 ctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcactaagtac 108797920
Query: 400 accagctccaa 410
||||| |||||
Sbjct: 108797919 accagttccaa 108797909
>Sscrofa_Chr14
|| Length = 153851969
Score = 289 bits (146), Expect = 2e-75
Identities = 335/398 (84%)
Strand = Plus / Plus
Query: 27 ttttaaaatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggc 86
|||||||||||||| ||||||||||| |||||||| |||| ||||| ||||||| | |
Sbjct: 48725428 ttttaaaatgcctggaccagcgaagtctgctcccgccccgaggaaggtctccaaggatgt 48725487
Query: 87 ggttaccaaggcccagaaaaaggacggtaagaagcgaaagcgcagccgcaaggagagcta 146
||| ||||||| ||||| ||||| || ||||||| |||| ||||| |||||||||||
Sbjct: 48725488 ggtgaccaaggtgcagaagaaggatggcaagaagcacaagcacagccacaaggagagctg 48725547
Query: 147 ctccgtgtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaa 206
|||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 48725548 ctccatgtacgtgtacaaggtgctgaagcaggtccacccagacactggcatctcatccaa 48725607
Query: 207 agccatgggcatcatgaactcctttgtcaacgacattttcgagcgcatcgccggcgaggc 266
||||||||| |||||||||||||||| ||| |||| ||||||| ||| | || |||||
Sbjct: 48725608 ggccatgggcgtcatgaactcctttgttaacaacatcttcgagcacattgggggtgaggc 48725667
Query: 267 ctcgcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggc 326
|| | |||| |||||||||||| |||| |||||||| ||| ||| ||||||||||||
Sbjct: 48725668 atcacacctggtgcattacaacaaatgctcaaccatcacatcctgggtgatccagacggc 48725727
Query: 327 cgtgcgcctgctgctgcctggggagctggccaagcacgccgtgtccgagggcaccaaggc 386
| || || |||||||||| |||||||||||||||| ||| || || || ||||||||||
Sbjct: 48725728 catgtgcttgctgctgccaggggagctggccaagcctgccatgcccaagtgcaccaaggc 48725787
Query: 387 tgtcaccaagtacaccagctccaaataaacttgccaag 424
||| ||||||| || |||| || ||||||| |||||
Sbjct: 48725788 tgtttccaagtatacaagcttcaggtaaactttccaag 48725825
>gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffold842
Length = 86102
Score = 258 bits (130), Expect = 6e-66
Identities = 289/342 (84%)
Strand = Plus / Plus
Query: 69 gaagggctccaagaaggcggttaccaaggcccagaaaaaggacggtaagaagcgaaagcg 128
|||||| || |||||||| |||||||| || |||||||| || || || ||||| |||||
Sbjct: 64181 gaagggttctaagaaggctgttaccaaagcgcagaaaaaagatggcaaaaagcgcaagcg 64240
Query: 129 cagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaagcaggtccacccgga 188
|||||| || || ||||| ||| | ||||||||||| ||| ||||||| || || || ||
Sbjct: 64241 cagccggaaagaaagctattccatctacgtgtacaaagtgttgaagcaagtacatcccga 64300
Query: 189 caccggcatctcgtccaaagccatgggcatcatgaactcctttgtcaacgacattttcga 248
||| |||||||| || || ||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct: 64301 cacgggcatctcttctaaggccatgggcataatgaattccttcgtcaacgacatctttga 64360
Query: 249 gcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacgtc 308
|||||||||| ||||||| || || ||||||| |||||||||||||| |||||||||||
Sbjct: 64361 gcgcatcgccagcgaggcttcccgcttggcgcactacaacaagcgctctaccatcacgtc 64420
Query: 309 ccgggagatccagacggccgtgcgcctgctgctgcctggggagctggccaagcacgccgt 368
|||||| | ||||| || ||||| |||||| ||||||| ||||||||||| ||||||||
Sbjct: 64421 tcgggaggtgcagacagctgtgcgtctgctgttgcctggcgagctggccaaacacgccgt 64480
Query: 369 gtccgagggcaccaaggctgtcaccaagtacaccagctccaa 410
||| || || ||||| || |||||||||||||| ||||||||
Sbjct: 64481 gtctgaaggtaccaaagccgtcaccaagtacacgagctccaa 64522
>Sscrofa_Chr18
|| Length = 61220071
Score = 153 bits (77), Expect = 2e-34
Identities = 197/237 (83%)
Strand = Plus / Plus
Query: 174 gcaggtccacccggacaccggcatctcgtccaaagccatgggcatcatgaactcctttgt 233
|||||| ||||| |||| ||||||||| ||||| |||||| ||||||||||||| |||||
Sbjct: 6385480 gcaggtgcaccccgacatcggcatctcttccaaggccatgagcatcatgaactcatttgt 6385539
Query: 234 caacgacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcg 293
|| || | || ||||| | |||||||||||| | |||||||| || ||| ||
Sbjct: 6385540 gaatgatgtgtttgagcggctggccggcgaggccgcccggctggcccagtactcgggccg 6385599
Query: 294 ctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggggagct 353
| || | || ||||||||| | |||||||||||||| |||||||||||||| |||||
Sbjct: 6385600 aaccacgctgacatcccgggaggtgcagacggccgtgcgtctgctgctgcctggcgagct 6385659
Query: 354 ggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaa 410
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 6385660 ggccaagcacgctgtgtctgagggcactaaggctgtcaccaagtacaccagctccaa 6385716
>Sscrofa_ChrX
|| Length = 144288218
Score = 133 bits (67), Expect = 2e-28
Identities = 148/175 (84%)
Strand = Plus / Minus
Query: 238 gacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgctcg 297
||||| |||||||||||||||| || ||| | || ||||| || | ||||||||||||
Sbjct: 98778104 gacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaacaagcgctcc 98778045
Query: 298 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggggagctggcc 357
|||||||||||| ||||||||||||| | ||||||||||||||||| |||||||| | |
Sbjct: 98778044 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctcggc 98777985
Query: 358 aagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaaat 412
| |||||||||||||| || ||||||||| |||| || ||||||| || |||||
Sbjct: 98777984 aggcacgccgtgtccgtggccaccaaggccgtcatcagatacaccacctgcaaat 98777930
Score = 125 bits (63), Expect = 5e-26
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 238 gacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgctcg 297
||||| |||||||||||||||| || ||| | | ||||| || | ||||||||||||
Sbjct: 98521133 gacatgttcgagcgcatcgccgaggaagccgcctgcctggcccactccaacaagcgctcc 98521192
Query: 298 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggggagctggcc 357
|||||||||||| ||||||||||||| | ||||||||||||||||| |||||||| | |
Sbjct: 98521193 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctcggc 98521252
Query: 358 aagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaaat 412
| |||||||||||||| || ||||||||| |||| || ||||||| || |||||
Sbjct: 98521253 aggcacgccgtgtccgtggccaccaaggccgtcatcagatacaccacctgcaaat 98521307
Score = 123 bits (62), Expect = 2e-25
Identities = 131/154 (85%)
Strand = Plus / Minus
Query: 238 gacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgctcg 297
||||| |||||||||||||||| || ||| | || ||||| || | ||||||||||||
Sbjct: 98547505 gacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaacaagcgctcc 98547446
Query: 298 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggggagctggcc 357
|||||||||||| ||||||||||||| | ||||||||||||||||| |||||||| |
Sbjct: 98547445 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctccgc 98547386
Query: 358 aagcacgccgtgtccgagggcaccaaggctgtca 391
||||||||| |||||| || ||||||||| ||||
Sbjct: 98547385 aagcacgccatgtccgtggccaccaaggccgtca 98547352
Score = 123 bits (62), Expect = 2e-25
Identities = 131/154 (85%)
Strand = Plus / Plus
Query: 238 gacattttcgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgctcg 297
||||| |||||||||||||||| || ||| | || ||||| || | ||||||||||||
Sbjct: 98752821 gacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaacaagcgctcc 98752880
Query: 298 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggggagctggcc 357
|||||||||||| ||||||||||||| | ||||||||||||||||| |||||||| |
Sbjct: 98752881 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctccgc 98752940
Query: 358 aagcacgccgtgtccgagggcaccaaggctgtca 391
||||||||| |||||| || ||||||||| ||||
Sbjct: 98752941 aagcacgccatgtccgtggccaccaaggccgtca 98752974
Score = 75.8 bits (38), Expect = 4e-11
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 289 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcctggg 348
|||||||| |||||||| ||| | |||||||||| | ||| ||||||||| |||||||
Sbjct: 98250072 aagcgctccaccatcacctccagagagatccagatctctgtgtgcctgctgccgcctggg 98250013
Query: 349 gagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctcc 408
||| ||| ||| || ||| |||| |||| || ||||||||||| || |||||||| || |
Sbjct: 98250012 gagatgggcaaacaagccatgtctgaggccagcaaggctgtcatcaggtacaccacctgc 98249953
Query: 409 aaataa 414
||||||
Sbjct: 98249952 aaataa 98249947
>gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4536
Length = 16885
Score = 127 bits (64), Expect = 1e-26
Identities = 100/112 (89%)
Strand = Plus / Plus
Query: 61 gctccgaagaagggctccaagaaggcggttaccaaggcccagaaaaaggacggtaagaag 120
|||||||||||||||||||| ||||| || |||||||| ||||| || ||||| ||||||
Sbjct: 495 gctccgaagaagggctccaaaaaggctgtgaccaaggcgcagaagaaagacggcaagaag 554
Query: 121 cgaaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctga 172
|| |||||||| ||||||||||| |||||| | |||||||||||||||||||
Sbjct: 555 cgcaagcgcagtcgcaaggagagttactccatctacgtgtacaaggtgctga 606
Score = 109 bits (55), Expect = 3e-21
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 181 cacccggacaccggcatctcgtccaaagccatgggcatcatgaactcctttgtcaacgac 240
|||||||| |||||||| || ||||| || |||||||||||||| || || || || |||
Sbjct: 711 cacccggataccggcatttcctccaaggctatgggcatcatgaattcgttcgttaatgac 770
Query: 241 attttcgagcgcatcgccggcgaggcctcgcggctggcgcatt 283
|||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 771 attttcgaacgcatcgctggcgaggcctcgcggctggcgcatt 813
>gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2573
Length = 41526
Score = 97.6 bits (49), Expect = 1e-17
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 347 gggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagct 406
||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 35340 gggagttggccaagcacgccgtgtctgagggcaccaaggccgttaccaagtacaccagct 35281
Query: 407 ccaaataaa 415
|||| ||||
Sbjct: 35280 ccaagtaaa 35272
Score = 75.8 bits (38), Expect = 4e-11
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 29 ttaaaatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcgg 88
||||||||||||| |||||||| || ||||| || || || |||||||||||||| || |
Sbjct: 16570 ttaaaatgcctgaaccagcgaaatctgctccagcccccaaaaagggctccaagaaagccg 16629
Query: 89 ttaccaaggcccagaaaaaggacggtaagaagcgaaagcgca 130
| |||||||| ||||| || || || |||||||| |||||||
Sbjct: 16630 tgaccaaggcgcagaagaaagatggcaagaagcgcaagcgca 16671
Score = 71.9 bits (36), Expect = 7e-10
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 135 caaggagagctactccgtgtacgtgtacaaggtgctgaagcagg 178
||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 21582 caaggagagctactccgtgtaggtgtacgaggtgctgaagcagg 21539
Score = 71.9 bits (36), Expect = 7e-10
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 30 taaaatgcctgagccagcgaagtccgctcccgctccgaagaagggctccaagaaggcggt 89
|||||||||||| ||| |||| || ||||| || |||||||||||||||||||| || ||
Sbjct: 35516 taaaatgcctgaaccaacgaaatctgctccagccccgaagaagggctccaagaaagccgt 35457
Query: 90 taccaaggcccagaaa 105
|||||||| ||||||
Sbjct: 35456 gaccaaggcgcagaaa 35441
>Sscrofa_Chr06
|| Length = 157765593
Score = 77.8 bits (39), Expect = 1e-11
Identities = 129/157 (82%), Gaps = 4/157 (2%)
Strand = Plus / Plus
Query: 69 gaagggctccaagaaggcggttaccaaggcccagaaaaaggacggtaagaagcgaaagcg 128
|||||||||||||||||| || ||||||| ||| |||||||| || |||| ||| |
Sbjct: 56929259 gaagggctccaagaaggcagtggccaaggcacag---aaggacggcaaagagcgcaagtg 56929315
Query: 129 cagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaagcaggtccacccgga 188
||||||| ||||||||| ||| ||| | |||| ||||||||| |||||| | ||| ||
Sbjct: 56929316 cagccgcgaggagagctcctcgctgttcatgtaggaggtgctgacgcaggtgc-cccaga 56929374
Query: 189 caccggcatctcgtccaaagccatgggcatcatgaac 225
||||||| |||||||||| |||| ||||||| |||||
Sbjct: 56929375 caccggcgtctcgtccaaggccacgggcatcgtgaac 56929411
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,213,833
Number of extensions: 263
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 35
Length of query: 1076
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1055
Effective length of database: 2,808,413,156
Effective search space: 2962875879580
Effective search space used: 2962875879580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)