Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012868
(878 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032546.1| histone H2B type 1 [Bos taurus]. 178 6e-45
Alignment gi|NP_001039711.1| histone 1, H2bi [Bos taurus]. 178 6e-45
Alignment gi|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
Alignment gi|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
Alignment gi|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
Alignment gi|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
Alignment gi|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
Alignment gi|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
Alignment gi|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus]. 178 6e-45
Alignment gi|XP_002697513.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 178 6e-45
>ref|NP_001032546.1| histone H2B type 1 [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001039711.1| histone 1, H2bi [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697513.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,006,292
Number of extensions: 751767
Number of successful extensions: 2583
Number of sequences better than 1.0e-05: 149
Number of HSP's gapped: 2572
Number of HSP's successfully gapped: 154
Length of query: 292
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 191
Effective length of database: 14,339,486
Effective search space: 2738841826
Effective search space used: 2738841826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012868
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012868
(878 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform ... 178 7e-45
Alignment gi|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform ... 178 7e-45
Alignment gi|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 7e-45
Alignment gi|XP_854227.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 7e-45
Alignment gi|XP_545398.2| PREDICTED: similar to Histone H2B 291B [Canis f... 178 7e-45
Alignment gi|XP_853860.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 7e-45
Alignment gi|XP_545418.1| PREDICTED: similar to Histone H2B 291B [Canis f... 178 7e-45
Alignment gi|XP_545374.2| PREDICTED: similar to testis-specific histone 2... 178 7e-45
Alignment gi|XP_849716.1| PREDICTED: similar to histone 1, H2bh isoform 1... 178 7e-45
Alignment gi|XP_859568.1| PREDICTED: similar to Histone H2B 291B isoform ... 178 7e-45
>ref|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform 1 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_854227.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_545398.2| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_853860.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_545418.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_545374.2| PREDICTED: similar to testis-specific histone 2b [Canis
familiaris].
Length = 127
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 37 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 96
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 97 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 127
>ref|XP_849716.1| PREDICTED: similar to histone 1, H2bh isoform 1 [Canis familiaris].
Length = 113
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 23 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 82
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 83 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 113
>ref|XP_859568.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,333,018
Number of extensions: 773363
Number of successful extensions: 2520
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 2492
Number of HSP's successfully gapped: 40
Length of query: 292
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 190
Effective length of database: 15,474,232
Effective search space: 2940104080
Effective search space used: 2940104080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012868
(878 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355257.1| PREDICTED: histone H2B type 2-B-like isoform... 179 2e-45
Alignment gi|XP_003356626.1| PREDICTED: histone H2B type 1-H-like [Sus sc... 178 4e-45
Alignment gi|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 4e-45
Alignment gi|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 178 4e-45
Alignment gi|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 178 4e-45
Alignment gi|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 4e-45
Alignment gi|XP_001928584.1| PREDICTED: histone H2B type 1-H-like [Sus sc... 178 4e-45
Alignment gi|XP_001927534.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 4e-45
Alignment gi|XP_001927519.1| PREDICTED: histone H2B type 1-like [Sus scro... 178 4e-45
Alignment gi|XP_001927974.1| PREDICTED: histone H2B type 1-M-like [Sus sc... 178 4e-45
>ref|XP_003355257.1| PREDICTED: histone H2B type 2-B-like isoform 2 [Sus scrofa].
Length = 131
Score = 179 bits (453), Expect = 2e-45
Identities = 92/95 (96%), Positives = 94/95 (98%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK*ASL 441
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK ++L
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSKKSTL 130
>ref|XP_003356626.1| PREDICTED: histone H2B type 1-H-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001928584.1| PREDICTED: histone H2B type 1-H-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927534.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927519.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001927974.1| PREDICTED: histone H2B type 1-M-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 4e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,292,657
Number of extensions: 482531
Number of successful extensions: 1633
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 32
Length of query: 292
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,904,026
Effective search space: 1727381044
Effective search space used: 1727381044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012868
(878 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus]. 178 6e-45
Alignment gi|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus]. 178 6e-45
Alignment gi|NP_783597.2| histone H2B type 2-B [Mus musculus]. 178 6e-45
Alignment gi|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus]. 178 6e-45
Alignment gi|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus]. 178 6e-45
Alignment gi|NP_835507.1| histone H2B type 1-M [Mus musculus]. 178 6e-45
Alignment gi|NP_835504.1| histone H2B type 1-H [Mus musculus]. 178 6e-45
Alignment gi|NP_835509.2| histone H2B type 1-P [Mus musculus]. 176 3e-44
Alignment gi|NP_783595.1| histone H2B type 1-B [Mus musculus]. 176 3e-44
Alignment gi|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus]. 176 3e-44
>ref|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_783597.2| histone H2B type 2-B [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835507.1| histone H2B type 1-M [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835504.1| histone H2B type 1-H [Mus musculus].
Length = 126
Score = 178 bits (451), Expect = 6e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835509.2| histone H2B type 1-P [Mus musculus].
Length = 138
Score = 176 bits (445), Expect = 3e-44
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_783595.1| histone H2B type 1-B [Mus musculus].
Length = 126
Score = 176 bits (445), Expect = 3e-44
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus].
Length = 126
Score = 176 bits (445), Expect = 3e-44
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,154,390
Number of extensions: 646093
Number of successful extensions: 2157
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2151
Number of HSP's successfully gapped: 22
Length of query: 292
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 192
Effective length of database: 12,613,959
Effective search space: 2421880128
Effective search space used: 2421880128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012868
(878 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154806.1| histone H2B type 2-F isoform b [Homo sapiens]. 178 7e-45
Alignment gi|NP_001019770.1| histone H2B type 2-F isoform a [Homo sapiens]. 178 7e-45
Alignment gi|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 7e-45
Alignment gi|NP_003512.1| histone H2B type 1-M [Homo sapiens]. 178 7e-45
Alignment gi|NP_003511.1| histone H2B type 1-N [Homo sapiens]. 178 7e-45
Alignment gi|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 7e-45
Alignment gi|NP_619790.1| histone H2B type 1-D [Homo sapiens]. 178 7e-45
Alignment gi|NP_066407.1| histone H2B type 1-D [Homo sapiens]. 178 7e-45
Alignment gi|NP_003517.2| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 7e-45
Alignment gi|NP_003516.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 178 7e-45
>ref|NP_001154806.1| histone H2B type 2-F isoform b [Homo sapiens].
Length = 134
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001019770.1| histone H2B type 2-F isoform a [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003512.1| histone H2B type 1-M [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003511.1| histone H2B type 1-N [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_619790.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_066407.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003517.2| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003516.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 7e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +1
Query: 157 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 336
ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 337 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 429
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,818,269
Number of extensions: 768985
Number of successful extensions: 2504
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2500
Number of HSP's successfully gapped: 22
Length of query: 292
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 190
Effective length of database: 14,934,836
Effective search space: 2837618840
Effective search space used: 2837618840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012868
(878 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 894 0.0
Sscrofa_Chr04 513 e-143
gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 283 8e-74
Sscrofa_Chr14 274 8e-71
Sscrofa_Chr18 168 3e-39
Sscrofa_Chr06 161 8e-37
gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 2e-25
Sscrofa_ChrX 119 3e-24
gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 100 2e-18
>Sscrofa_Chr07
|| Length = 134764511
Score = 894 bits (451), Expect = 0.0
Identities = 454/455 (99%)
Strand = Plus / Plus
Query: 1 ctcattctctttccttttacctttgggttgttcgcagattgattcctgactatgcctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110611 ctcattctctttccttttacctttgggttgttcgcagattgattcctgactatgcctgag 23110670
Query: 61 ccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110671 ccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcag 23110730
Query: 121 aagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110731 aagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtac 23110790
Query: 181 aaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110791 aaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatg 23110850
Query: 241 aactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110851 aactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcat 23110910
Query: 301 tacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctg 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 23110911 tacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctg 23110970
Query: 361 cccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110971 cccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacacc 23111030
Query: 421 agctccaagtgagccagcctgcagcggagcgactg 455
|||||||||||||||||||||||||||||||||||
Sbjct: 23111031 agctccaagtgagccagcctgcagcggagcgactg 23111065
Score = 841 bits (424), Expect = 0.0
Identities = 424/424 (100%)
Strand = Plus / Plus
Query: 455 gaactgtgtccatcacttcttgcatgagaagggatccttctgaagccaccagaatgatta 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163408 gaactgtgtccatcacttcttgcatgagaagggatccttctgaagccaccagaatgatta 23163467
Query: 515 acctcatcagagccctttcagtgacatctacagtggactctccacttccgccatctcgac 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163468 acctcatcagagccctttcagtgacatctacagtggactctccacttccgccatctcgac 23163527
Query: 575 agtcctctgatatgtttttgttggatctaaaatcttggcggaggcaaatccctgaacacc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163528 agtcctctgatatgtttttgttggatctaaaatcttggcggaggcaaatccctgaacacc 23163587
Query: 635 atcctgacttcttaggatgggatccttatccccttcacctacatcagtctgtagttattg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163588 atcctgacttcttaggatgggatccttatccccttcacctacatcagtctgtagttattg 23163647
Query: 695 cttccttcaagcctagtgttttggcagtggccacaccagggaacacagatttctacaagc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163648 cttccttcaagcctagtgttttggcagtggccacaccagggaacacagatttctacaagc 23163707
Query: 755 cacaaccatgactttaaataatgtggcagttgtaatttgatggagttaaaaagtatagaa 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163708 cacaaccatgactttaaataatgtggcagttgtaatttgatggagttaaaaagtatagaa 23163767
Query: 815 gaatatgtaccatacacttactactccagtgttcctcaccgcagtccattccatgtgggg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163768 gaatatgtaccatacacttactactccagtgttcctcaccgcagtccattccatgtgggg 23163827
Query: 875 aaaa 878
||||
Sbjct: 23163828 aaaa 23163831
Score = 622 bits (314), Expect = e-176
Identities = 365/382 (95%)
Strand = Plus / Plus
Query: 52 atgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgacc 111
||||||||||| | ||||||||||| ||||| || |||||||||||||| || ||||||
Sbjct: 23097502 atgcctgagccagctaagtccgctcctgcccccaaaaagggctccaagaaagcagtgacc 23097561
Query: 112 aaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtg 171
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 23097562 aaggcgcagaagaaggacggcaagaagcgcaagcgcagccgcaaggagagctactcggtg 23097621
Query: 172 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23097622 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23097681
Query: 232 ggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcgg 291
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 23097682 ggcatcatgaactcatttgtcaacgacatctttgagcgcatcgccggcgaggcctcgcgg 23097741
Query: 292 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23097742 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23097801
Query: 352 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 411
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 23097802 ctgctgctgcccggggagctggccaagcatgccgtgtctgagggcaccaaggctgtcacc 23097861
Query: 412 aagtacaccagctccaagtgag 433
||||||||||||||||||||||
Sbjct: 23097862 aagtacaccagctccaagtgag 23097883
Score = 609 bits (307), Expect = e-171
Identities = 343/355 (96%)
Strand = Plus / Minus
Query: 79 gccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggcaagaag 138
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 23174467 gccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaaggacggcaagaag 23174408
Query: 139 cgtaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaagcaggtc 198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23174407 cgcaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaagcaggtc 23174348
Query: 199 caccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgac 258
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 23174347 caccccgacaccggcatctcgtccaaagccatgggcatcatgaattcctttgtcaacgac 23174288
Query: 259 atctttgagcgcattgccggcgaggcctcgcggctggcgcattacaacaagcgctcgacc 318
||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 23174287 atcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgctcgacc 23174228
Query: 319 atcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23174227 atcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaag 23174168
Query: 379 cacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaagtgag 433
|| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 23174167 catgccgtgtccgagggcaccaaggctgtcaccaagtacacaagcgccaagtgag 23174113
Score = 595 bits (300), Expect = e-167
Identities = 348/364 (95%)
Strand = Plus / Minus
Query: 67 aagtccgctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaag 126
||||||||||| ||||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct: 23086240 aagtccgctcctgcccccaaaaaaggctccaagaaagccgtgactaaggcgcagaaaaag 23086181
Query: 127 gatggcaagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtg 186
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086180 gacggcaagaagcgcaagcgcagccgcaaggagagctactcggtgtacgtgtacaaggtg 23086121
Query: 187 ctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086120 ctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactcc 23086061
Query: 247 ttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcattacaac 306
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 23086060 ttcgtcaacgacatctttgagcgtatcgcgggcgaggcctcgcggctggcgcattacaac 23086001
Query: 307 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggg 366
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23086000 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggg 23085941
Query: 367 gagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctcc 426
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085940 gagttggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctcc 23085881
Query: 427 aagt 430
||||
Sbjct: 23085880 aagt 23085877
Score = 577 bits (291), Expect = e-162
Identities = 357/379 (94%)
Strand = Plus / Minus
Query: 50 ctatgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtga 109
|||||||||| ||| |||| || ||||| ||||| |||||||| |||||||| |||||||
Sbjct: 22052938 ctatgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtga 22052879
Query: 110 ccaaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcgg 169
| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 22052878 ctaaggcgcagaagaaggatggcaagaagcgaaagcgcagccgcaaggagagctactccg 22052819
Query: 170 tgtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggcca 229
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 22052818 tgtacgtgtacaaggtgctgaagcaggtccacccggacaccggcatctcgtccaaagcca 22052759
Query: 230 tgggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgc 289
||||||||||||||||||| |||||||||||||| |||||||| || || ||||||||||
Sbjct: 22052758 tgggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgc 22052699
Query: 290 ggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052698 ggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgc 22052639
Query: 350 ggctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtca 409
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 22052638 gcctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtca 22052579
Query: 410 ccaagtacaccagctccaa 428
|||||||||||||||||||
Sbjct: 22052578 ccaagtacaccagctccaa 22052560
Score = 561 bits (283), Expect = e-157
Identities = 339/358 (94%)
Strand = Plus / Minus
Query: 73 gctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggc 132
||||| ||||| ||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 22032329 gctccagccccgaagaagggctccaagaaagccgtgaccaaggcgcagaaaaaagatggc 22032270
Query: 133 aagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaag 192
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22032269 aagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaag 22032210
Query: 193 caggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22032209 caggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtc 22032150
Query: 253 aacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcattacaacaagcgc 312
||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 22032149 aacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgg 22032090
Query: 313 tcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 22032089 tcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggngagttg 22032030
Query: 373 gccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaagt 430
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 22032029 gccaagcacgccgtgtctgagggcaccaaggccgttaccaagtacaccagctccaagt 22031972
Score = 559 bits (282), Expect = e-157
Identities = 339/358 (94%)
Strand = Plus / Plus
Query: 73 gctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggc 132
||||| ||||| || |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 22089340 gctccagcccccaaaaagggctccaagaaagccgtgaccaaggcgcagaagaaagatggc 22089399
Query: 133 aagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaag 192
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22089400 aagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaag 22089459
Query: 193 caggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtc 252
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 22089460 caggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactcctttgtc 22089519
Query: 253 aacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcattacaacaagcgc 312
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 22089520 aacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgc 22089579
Query: 313 tcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 22089580 tcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagttg 22089639
Query: 373 gccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaagt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 22089640 gccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctctaagt 22089697
Score = 272 bits (137), Expect = 3e-70
Identities = 296/352 (84%), Gaps = 14/352 (3%)
Strand = Plus / Plus
Query: 85 aagaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggcaagaagcgtaaa 144
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct: 23188902 aagaagggctccaagaaggcggtgaccagggcgcagaagaaggacggcaagaagcgcagg 23188961
Query: 145 cgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaagcaggtccacccc 204
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 23188962 cgcagccgcaaggagagctactcagtgtacgtgtacaaggtgctgaagcaggtctacccg 23189021
Query: 205 gacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgacatcttt 264
||||| ||||| |||||||||||||||| ||||| ||||||||| |
Sbjct: 23189022 gacac--------------aggccgtgggcatcatgaactctttcgttaacgacatcgtc 23189067
Query: 265 gagcgcattgccggcgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacg 324
|||||||| | |||||||| ||||| |||||||||||||| || ||||||||||| |||
Sbjct: 23189068 gagcgcatcacgggcgaggcatcgcgcctggcgcattacaaaaatcgctcgaccattacg 23189127
Query: 325 tcccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaagcacgcc 384
| | || ||| ||| || |||||| | |||||| ||||||||| ||||||| || ||
Sbjct: 23189128 ttctcgggcatctagatggacgtgcgccagctgcttcccggggagatggccaaacatgct 23189187
Query: 385 gtgtccgagggcaccaaggctgtcaccaagtacaccagctccaagtgagcca 436
||||| |||||| ||||| |||||| |||||||||||| ||||||||||||
Sbjct: 23189188 gtgtctgagggcgccaagcctgtcagcaagtacaccagtgccaagtgagcca 23189239
Score = 258 bits (130), Expect = 5e-66
Identities = 238/274 (86%)
Strand = Plus / Minus
Query: 157 gagagctactcggtgtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatc 216
||||||||||| | ||| | ||||||||||||||||| || || ||||| || || |||
Sbjct: 21770604 gagagctactcaatctacatctacaaggtgctgaagcaagttcatcccgatacaggtatc 21770545
Query: 217 tcgtccaaggccatgggcatcatgaactccttcgtcaacgacatctttgagcgcattgcc 276
|| || ||||||||| |||||||||| || ||||||| |||||||| |||||||| ||
Sbjct: 21770544 tcttcgaaggccatgagcatcatgaattctttcgtcactgacatcttcgagcgcatcgca 21770485
Query: 277 ggcgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatc 336
| ||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 21770484 agtgaggcgtcgcgcctggcacattacaacaagcgctccacgatcacgtcccgggagatc 21770425
Query: 337 cagacggccgtgcggctgctgctgcccggggagctggccaagcacgccgtgtccgagggc 396
|||||||||||||| ||||| | || |||||| ||||||||||||| ||||||||||||
Sbjct: 21770424 cagacggccgtgcgcttgctgttaccaggggagttggccaagcacgcggtgtccgagggc 21770365
Query: 397 accaaggctgtcaccaagtacaccagctccaagt 430
|| |||||||||||||||||||||||||||||||
Sbjct: 21770364 actaaggctgtcaccaagtacaccagctccaagt 21770331
Score = 137 bits (69), Expect = 1e-29
Identities = 207/253 (81%)
Strand = Plus / Plus
Query: 178 tacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatc 237
||||||||||| ||||| || || || || ||||| || || |||||||||||| |||||
Sbjct: 21765243 tacaaggtgcttaagcaagttcatccagataccggtatttcttccaaggccatgagcatc 21765302
Query: 238 atgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggcg 297
||||| || || |||| || |||||||||||||| || || || || ||||| ||||
Sbjct: 21765303 atgaattcgtttgtcactgatatctttgagcgcatcgcaggtgaagcatcgcgtttggca 21765362
Query: 298 cattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctg 357
|| |||| |||||| || || ||||| ||| | |||||||| ||||| ||||| || ||
Sbjct: 21765363 cactacagcaagcgttccactatcacttccagagagatccaaacggctgtgcgtctcttg 21765422
Query: 358 ctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtac 417
||||| || ||| |||||||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 21765423 ctgccgggagagttggccaagcatgcagtgtctgagggcaccaaagctgtcaccaagtat 21765482
Query: 418 accagctccaagt 430
|| ||||||||||
Sbjct: 21765483 actagctccaagt 21765495
Score = 63.9 bits (32), Expect = 1e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 153 caaggagagctactcggtgtacgtgtacaaggtgctgaagcagg 196
||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 22094525 caaggagagctactccgtgtaggtgtacgaggtgctgaagcagg 22094482
>Sscrofa_Chr04
|| Length = 143465943
Score = 513 bits (259), Expect = e-143
Identities = 352/383 (91%)
Strand = Plus / Plus
Query: 51 tatgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgac 110
||||||||||||| |||||||||| ||||| || ||||||||||| ||||| || || ||
Sbjct: 108524413 tatgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcac 108524472
Query: 111 caaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggt 170
||| || ||||||||||| ||||||||||| || |||||||||||||||||||| || |
Sbjct: 108524473 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108524532
Query: 171 gtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccat 230
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 108524533 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108524592
Query: 231 gggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcg 290
||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||
Sbjct: 108524593 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108524652
Query: 291 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 350
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524653 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108524712
Query: 351 gctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcac 410
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 108524713 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108524772
Query: 411 caagtacaccagctccaagtgag 433
|||||||||||||||||||||||
Sbjct: 108524773 caagtacaccagctccaagtgag 108524795
Score = 513 bits (259), Expect = e-143
Identities = 352/383 (91%)
Strand = Plus / Plus
Query: 51 tatgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgac 110
||||||||||||| |||||||||| ||||| || ||||||||||| ||||| || || ||
Sbjct: 108816868 tatgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcac 108816927
Query: 111 caaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggt 170
||| || ||||||||||| ||||||||||| || |||||||||||||||||||| || |
Sbjct: 108816928 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108816987
Query: 171 gtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccat 230
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 108816988 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108817047
Query: 231 gggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcg 290
||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||
Sbjct: 108817048 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108817107
Query: 291 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 350
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108817108 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108817167
Query: 351 gctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcac 410
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 108817168 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108817227
Query: 411 caagtacaccagctccaagtgag 433
|||||||||||||||||||||||
Sbjct: 108817228 caagtacaccagctccaagtgag 108817250
Score = 513 bits (259), Expect = e-143
Identities = 352/383 (91%)
Strand = Plus / Minus
Query: 51 tatgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgac 110
||||||||||||| |||||||||| ||||| || ||||||||||| ||||| || || ||
Sbjct: 108824576 tatgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcac 108824517
Query: 111 caaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggt 170
||| || ||||||||||| ||||||||||| || |||||||||||||||||||| || |
Sbjct: 108824516 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108824457
Query: 171 gtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccat 230
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 108824456 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108824397
Query: 231 gggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcg 290
||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||
Sbjct: 108824396 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108824337
Query: 291 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 350
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824336 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108824277
Query: 351 gctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcac 410
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 108824276 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108824217
Query: 411 caagtacaccagctccaagtgag 433
|||||||||||||||||||||||
Sbjct: 108824216 caagtacaccagctccaagtgag 108824194
Score = 486 bits (245), Expect = e-134
Identities = 338/369 (91%)
Strand = Plus / Minus
Query: 65 ccaagtccgctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaaga 124
|||||||||| ||||| |||||||||||||| ||||| || || ||||| || |||||||
Sbjct: 108532107 ccaagtccgccccggcgccaaagaagggctcgaagaaagccgtcaccaaagcccagaaga 108532048
Query: 125 aggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtacaagg 184
|||| |||| ||||| || |||||||||||||||||||| || | |||||||||||||
Sbjct: 108532047 aggacggcagaaagcggaagcgcagccgcaaggagagctattccatctacgtgtacaagg 108531988
Query: 185 tgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaact 244
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 108531987 tgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaact 108531928
Query: 245 ccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcattaca 304
||||||||||||||||||| |||||||| || ||||| || || || ||||| |||||||
Sbjct: 108531927 ccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattaca 108531868
Query: 305 acaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccg 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 108531867 acaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccg 108531808
Query: 365 gggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagct 424
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 108531807 gcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcaccaagtacaccagct 108531748
Query: 425 ccaagtgag 433
|||||||||
Sbjct: 108531747 ccaagtgag 108531739
Score = 472 bits (238), Expect = e-130
Identities = 346/382 (90%)
Strand = Plus / Minus
Query: 52 atgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgacc 111
||||||||||| | || || ||||| || || ||||||||||| ||||| || || |||
Sbjct: 108549852 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 108549793
Query: 112 aaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtg 171
|| || ||||||||||| ||||||||||| || |||||||||||||||||||| || |
Sbjct: 108549792 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108549733
Query: 172 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 231
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 108549732 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108549673
Query: 232 ggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcgg 291
|||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||
Sbjct: 108549672 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108549613
Query: 292 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 351
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549612 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108549553
Query: 352 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 411
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 108549552 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 108549493
Query: 412 aagtacaccagctccaagtgag 433
||||||||||||||||||||||
Sbjct: 108549492 aagtacaccagctccaagtgag 108549471
Score = 472 bits (238), Expect = e-130
Identities = 346/382 (90%)
Strand = Plus / Minus
Query: 52 atgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgacc 111
||||||||||| | || || ||||| || || ||||||||||| ||||| || || |||
Sbjct: 108844654 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 108844595
Query: 112 aaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtg 171
|| || ||||||||||| ||||||||||| || |||||||||||||||||||| || |
Sbjct: 108844594 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108844535
Query: 172 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 231
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 108844534 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108844475
Query: 232 ggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcgg 291
|||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||
Sbjct: 108844474 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108844415
Query: 292 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 351
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844414 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108844355
Query: 352 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 411
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 108844354 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 108844295
Query: 412 aagtacaccagctccaagtgag 433
||||||||||||||||||||||
Sbjct: 108844294 aagtacaccagctccaagtgag 108844273
Score = 408 bits (206), Expect = e-111
Identities = 287/314 (91%)
Strand = Plus / Minus
Query: 117 gcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtgtacgt 176
|||||||||||||||||| ||||| || || ||||||||||| || ||||| ||||| ||
Sbjct: 108798220 gcagaagaaggatggcaaaaagcgcaagcgaagccgcaaggaaagttactctgtgtatgt 108798161
Query: 177 gtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcat 236
||||| |||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 108798160 atacaaagtgctgaaacaggttcatccagacaccggcatctcgtccaaggccatgggcat 108798101
Query: 237 catgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggc 296
||||||||||||||||||||||||||| |||||||| || ||||| || || || |||||
Sbjct: 108798100 catgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggc 108798041
Query: 297 gcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 108798040 tcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgct 108797981
Query: 357 gctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagta 416
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 108797980 gctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcactaagta 108797921
Query: 417 caccagctccaagt 430
|||||| |||||||
Sbjct: 108797920 caccagttccaagt 108797907
>gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffold842
Length = 86102
Score = 283 bits (143), Expect = 8e-74
Identities = 296/347 (85%)
Strand = Plus / Plus
Query: 87 gaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggcaagaagcgtaaacg 146
|||||| || |||||||| || ||||| |||||||| || |||||||| ||||| || ||
Sbjct: 64181 gaagggttctaagaaggctgttaccaaagcgcagaaaaaagatggcaaaaagcgcaagcg 64240
Query: 147 cagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaagcaggtccaccccga 206
|||||| || || ||||| || | ||||||||||| ||| ||||||| || || |||||
Sbjct: 64241 cagccggaaagaaagctattccatctacgtgtacaaagtgttgaagcaagtacatcccga 64300
Query: 207 caccggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgacatctttga 266
||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 64301 cacgggcatctcttctaaggccatgggcataatgaattccttcgtcaacgacatctttga 64360
Query: 267 gcgcattgccggcgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacgtc 326
|||||| ||| ||||||| || || ||||||| |||||||||||||| |||||||||||
Sbjct: 64361 gcgcatcgccagcgaggcttcccgcttggcgcactacaacaagcgctctaccatcacgtc 64420
Query: 327 ccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaagcacgccgt 386
|||||| | ||||| || ||||| |||||| |||| || ||||||||||| ||||||||
Sbjct: 64421 tcgggaggtgcagacagctgtgcgtctgctgttgcctggcgagctggccaaacacgccgt 64480
Query: 387 gtccgagggcaccaaggctgtcaccaagtacaccagctccaagtgag 433
||| || || ||||| || |||||||||||||| |||||||||||||
Sbjct: 64481 gtctgaaggtaccaaagccgtcaccaagtacacgagctccaagtgag 64527
>Sscrofa_Chr14
|| Length = 153851969
Score = 274 bits (138), Expect = 8e-71
Identities = 297/350 (84%)
Strand = Plus / Plus
Query: 67 aagtccgctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaag 126
||||| ||||| ||||| | ||||| ||||||| | | ||||||||||| ||||||||||
Sbjct: 48725450 aagtctgctcccgccccgaggaaggtctccaaggatgtggtgaccaaggtgcagaagaag 48725509
Query: 127 gatggcaagaagcgtaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtg 186
||||||||||||| || | ||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 48725510 gatggcaagaagcacaagcacagccacaaggagagctgctccatgtacgtgtacaaggtg 48725569
Query: 187 ctgaagcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactcc 246
||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 48725570 ctgaagcaggtccacccagacactggcatctcatccaaggccatgggcgtcatgaactcc 48725629
Query: 247 ttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcattacaac 306
|| || ||| ||||||| |||| ||||| || ||||| || | |||| ||||||||||
Sbjct: 48725630 tttgttaacaacatcttcgagcacattgggggtgaggcatcacacctggtgcattacaac 48725689
Query: 307 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggg 366
|| |||| |||||||| ||| ||| ||||||||||||| || | |||||||||| |||
Sbjct: 48725690 aaatgctcaaccatcacatcctgggtgatccagacggccatgtgcttgctgctgccaggg 48725749
Query: 367 gagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagta 416
||||||||||||| ||| || || || ||||||||||||| |||||||
Sbjct: 48725750 gagctggccaagcctgccatgcccaagtgcaccaaggctgtttccaagta 48725799
>Sscrofa_Chr18
|| Length = 61220071
Score = 168 bits (85), Expect = 3e-39
Identities = 202/241 (83%)
Strand = Plus / Plus
Query: 192 gcaggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgt 251
|||||| |||||||||| ||||||||| |||||||||||| ||||||||||||| || ||
Sbjct: 6385480 gcaggtgcaccccgacatcggcatctcttccaaggccatgagcatcatgaactcatttgt 6385539
Query: 252 caacgacatctttgagcgcattgccggcgaggcctcgcggctggcgcattacaacaagcg 311
|| || | |||||||| | |||||||||||| | |||||||| || ||| ||
Sbjct: 6385540 gaatgatgtgtttgagcggctggccggcgaggccgcccggctggcccagtactcgggccg 6385599
Query: 312 ctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagct 371
| || | || ||||||||| | |||||||||||||| ||||||||||| || |||||
Sbjct: 6385600 aaccacgctgacatcccgggaggtgcagacggccgtgcgtctgctgctgcctggcgagct 6385659
Query: 372 ggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaagtg 431
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6385660 ggccaagcacgctgtgtctgagggcactaaggctgtcaccaagtacaccagctccaagtg 6385719
Query: 432 a 432
|
Sbjct: 6385720 a 6385720
>Sscrofa_Chr06
|| Length = 157765593
Score = 161 bits (81), Expect = 8e-37
Identities = 269/331 (81%), Gaps = 13/331 (3%)
Strand = Plus / Plus
Query: 389 ccgagggcaccaaggctgtcaccaagtacaccagctccaagtgagccagcctgcagcgga 448
||||| || |||||||||||||||||||| || |||| ||| |||||||||||||||||
Sbjct: 56929516 ccgagagctccaaggctgtcaccaagtaccccggctctaagggagccagcctgcagcggc 56929575
Query: 449 gcgactgaactgtgtccatcacttcttgcatgagaagggatccttctgaagccaccagaa 508
|| | |||||||||||| |||| ||| ||| |||||||| |||||||||||||| |||
Sbjct: 56929576 gccattgaactgtgtccgtcacatctggcacgagaaggggtccttctgaagccatgggaa 56929635
Query: 509 tgattaacctcatcagagccctttcagtgacatctacagtggactctccacttccgccat 568
|||||||||||||| | | ||||||| |||||| ||| |||| |||||||
Sbjct: 56929636 cgattaacctcatca---------ccgggacatctgcagtggtctccccacatccgccac 56929686
Query: 569 ctcgacagtcctctgatatgtttttgttggatctaaaatcttggcggaggcaaatccctg 628
|| |||||||||| || | |||| ||| | || |||||||| ||||| || ||||||
Sbjct: 56929687 cttgacagtcctccgacacgtttgtgtgg---ctccaatcttggtggagggaactccctg 56929743
Query: 629 aacaccatcctgacttcttaggatgggatccttatccccttcacctacatcagtctgtag 688
||||||||||||||||| |||| |||||||||||| |||||| || | | | ||| ||
Sbjct: 56929744 aacaccatcctgacttcctagggtgggatccttat-cccttccccgatgccggcctggag 56929802
Query: 689 ttattgcttccttcaagcctagtgttttggc 719
|| |||||||| |||||||| ||||||||||
Sbjct: 56929803 tttttgcttccgtcaagcctggtgttttggc 56929833
Score = 97.6 bits (49), Expect = 1e-17
Identities = 164/200 (82%), Gaps = 8/200 (4%)
Strand = Plus / Plus
Query: 44 tcctgactatgcctgagccctccaagtccgctccggccccaaagaagggctccaagaagg 103
||||||| ||||| ||||||||| ||| ||||| |||| |||||||||||||||||
Sbjct: 56929220 tcctgaccatgccccagccctccatgtctgctccagccc----gaagggctccaagaagg 56929275
Query: 104 cggtgaccaaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagct 163
| ||| ||||||| |||||| || ||||| |||| || |||||||| |||||||||
Sbjct: 56929276 cagtggccaaggcacagaag---gacggcaaagagcgcaagtgcagccgcgaggagagct 56929332
Query: 164 actcggtgtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtcca 223
|||| ||| | |||| ||||||||| |||||| | ||| ||||||||| |||||||||
Sbjct: 56929333 cctcgctgttcatgtaggaggtgctgacgcaggtgc-cccagacaccggcgtctcgtcca 56929391
Query: 224 aggccatgggcatcatgaac 243
|||||| ||||||| |||||
Sbjct: 56929392 aggccacgggcatcgtgaac 56929411
>gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4536
Length = 16885
Score = 123 bits (62), Expect = 2e-25
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 85 aagaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggcaagaagcgtaaa 144
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct: 501 aagaagggctccaaaaaggctgtgaccaaggcgcagaagaaagacggcaagaagcgcaag 560
Query: 145 cgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctga 190
||||| ||||||||||| ||||| | |||||||||||||||||||
Sbjct: 561 cgcagtcgcaaggagagttactccatctacgtgtacaaggtgctga 606
Score = 93.7 bits (47), Expect = 2e-16
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 199 caccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgac 258
||||| || |||||||| || |||||||| |||||||||||||| || ||||| || |||
Sbjct: 711 cacccggataccggcatttcctccaaggctatgggcatcatgaattcgttcgttaatgac 770
Query: 259 atctttgagcgcattgccggcgaggcctcgcggctggcgcatt 301
|| || || ||||| || |||||||||||||||||||||||||
Sbjct: 771 attttcgaacgcatcgctggcgaggcctcgcggctggcgcatt 813
>Sscrofa_ChrX
|| Length = 144288218
Score = 119 bits (60), Expect = 3e-24
Identities = 114/132 (86%)
Strand = Plus / Plus
Query: 303 caacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcc 362
|||||||||||| |||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct: 98521180 caacaagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcc 98521239
Query: 363 cggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccag 422
||||||||| | || |||||||||||||| || ||||||||| |||| || |||||||
Sbjct: 98521240 cggggagctcggcaggcacgccgtgtccgtggccaccaaggccgtcatcagatacaccac 98521299
Query: 423 ctccaagtgagc 434
|| ||| |||||
Sbjct: 98521300 ctgcaaatgagc 98521311
Score = 119 bits (60), Expect = 3e-24
Identities = 114/132 (86%)
Strand = Plus / Minus
Query: 303 caacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcc 362
|||||||||||| |||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct: 98778057 caacaagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcc 98777998
Query: 363 cggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccag 422
||||||||| | || |||||||||||||| || ||||||||| |||| || |||||||
Sbjct: 98777997 cggggagctcggcaggcacgccgtgtccgtggccaccaaggccgtcatcagatacaccac 98777938
Query: 423 ctccaagtgagc 434
|| ||| |||||
Sbjct: 98777937 ctgcaaatgagc 98777926
Score = 109 bits (55), Expect = 3e-21
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 303 caacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcc 362
|||||||||||| |||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct: 98547458 caacaagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcc 98547399
Query: 363 cggggagctggccaagcacgccgtgtccgagggcaccaaggctgtca 409
||||||||| |||||||||| |||||| || ||||||||| ||||
Sbjct: 98547398 cggggagctccgcaagcacgccatgtccgtggccaccaaggccgtca 98547352
Score = 109 bits (55), Expect = 3e-21
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 303 caacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcc 362
|||||||||||| |||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct: 98752868 caacaagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcc 98752927
Query: 363 cggggagctggccaagcacgccgtgtccgagggcaccaaggctgtca 409
||||||||| |||||||||| |||||| || ||||||||| ||||
Sbjct: 98752928 cggggagctccgcaagcacgccatgtccgtggccaccaaggccgtca 98752974
>gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2573
Length = 41526
Score = 99.6 bits (50), Expect = 2e-18
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 365 gggagctggccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagct 424
||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 35340 gggagttggccaagcacgccgtgtctgagggcaccaaggccgttaccaagtacaccagct 35281
Query: 425 ccaagt 430
||||||
Sbjct: 35280 ccaagt 35275
Score = 87.7 bits (44), Expect = 9e-15
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 73 gctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaaggatggc 132
||||| ||||| || |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 16596 gctccagcccccaaaaagggctccaagaaagccgtgaccaaggcgcagaagaaagatggc 16655
Query: 133 aagaagcg 140
||||||||
Sbjct: 16656 aagaagcg 16663
Score = 67.9 bits (34), Expect = 9e-09
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 73 gctccggccccaaagaagggctccaagaaggcggtgaccaaggcgcagaa 122
||||| ||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 35491 gctccagccccgaagaagggctccaagaaagccgtgaccaaggcgcagaa 35442
Score = 63.9 bits (32), Expect = 1e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 153 caaggagagctactcggtgtacgtgtacaaggtgctgaagcagg 196
||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 21582 caaggagagctactccgtgtaggtgtacgaggtgctgaagcagg 21539
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,299,765
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 37
Length of query: 878
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 857
Effective length of database: 2,808,413,156
Effective search space: 2406810074692
Effective search space used: 2406810074692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)