Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012869
(836 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039711.1| histone 1, H2bi [Bos taurus]. 182 4e-46
Alignment gi|NP_001032546.1| histone H2B type 1 [Bos taurus]. 180 2e-45
Alignment gi|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
Alignment gi|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
Alignment gi|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
Alignment gi|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
Alignment gi|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
Alignment gi|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
Alignment gi|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus]. 180 2e-45
Alignment gi|XP_002697513.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 180 2e-45
>ref|NP_001039711.1| histone 1, H2bi [Bos taurus].
Length = 126
Score = 182 bits (461), Expect = 4e-46
Identities = 98/126 (77%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEPT VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_001032546.1| histone H2B type 1 [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_002697513.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,730,763
Number of extensions: 467097
Number of successful extensions: 1402
Number of sequences better than 1.0e-05: 151
Number of HSP's gapped: 1396
Number of HSP's successfully gapped: 154
Length of query: 278
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 177
Effective length of database: 14,339,486
Effective search space: 2538089022
Effective search space used: 2538089022
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012869
(836 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform ... 180 2e-45
Alignment gi|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform ... 180 2e-45
Alignment gi|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis f... 180 2e-45
Alignment gi|XP_854227.1| PREDICTED: similar to Histone H2B 291B [Canis f... 180 2e-45
Alignment gi|XP_545398.2| PREDICTED: similar to Histone H2B 291B [Canis f... 180 2e-45
Alignment gi|XP_853860.1| PREDICTED: similar to Histone H2B 291B [Canis f... 180 2e-45
Alignment gi|XP_545418.1| PREDICTED: similar to Histone H2B 291B [Canis f... 180 2e-45
Alignment gi|XP_859568.1| PREDICTED: similar to Histone H2B 291B isoform ... 180 2e-45
Alignment gi|XP_859358.1| PREDICTED: similar to Histone H2B 291B isoform ... 180 2e-45
Alignment gi|XP_545389.1| PREDICTED: similar to Histone H2B 291B isoform ... 180 2e-45
>ref|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform 1 [Canis
familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_854227.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_545398.2| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_853860.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_545418.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_859568.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_859358.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_545389.1| PREDICTED: similar to Histone H2B 291B isoform 1 [Canis
familiaris].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,633,710
Number of extensions: 469481
Number of successful extensions: 1222
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 40
Length of query: 278
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 177
Effective length of database: 15,507,568
Effective search space: 2744839536
Effective search space used: 2744839536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012869
(836 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927974.1| PREDICTED: histone H2B type 1-M-like [Sus sc... 182 3e-46
Alignment gi|NP_001230585.1| histone H2B type 1-D [Sus scrofa]. 182 3e-46
Alignment gi|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 180 7e-46
Alignment gi|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 180 7e-46
Alignment gi|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scro... 180 1e-45
Alignment gi|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scro... 180 1e-45
Alignment gi|XP_001927534.1| PREDICTED: histone H2B type 1-like [Sus scro... 180 1e-45
Alignment gi|XP_001927519.1| PREDICTED: histone H2B type 1-like [Sus scro... 180 1e-45
Alignment gi|XP_001927752.1| PREDICTED: histone H2B type 1-like [Sus scro... 180 1e-45
Alignment gi|XP_003356595.1| PREDICTED: histone H2B type 1-like isoform 4... 180 1e-45
>ref|XP_001927974.1| PREDICTED: histone H2B type 1-M-like [Sus scrofa].
Length = 126
Score = 182 bits (461), Expect = 3e-46
Identities = 98/126 (77%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEPT VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_001230585.1| histone H2B type 1-D [Sus scrofa].
Length = 126
Score = 182 bits (461), Expect = 3e-46
Identities = 98/126 (77%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEPT VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 180 bits (457), Expect = 7e-46
Identities = 97/126 (76%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP+ VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 180 bits (457), Expect = 7e-46
Identities = 97/126 (76%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP+ VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_001927534.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_001927519.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_001927752.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|XP_003356595.1| PREDICTED: histone H2B type 1-like isoform 4 [Sus scrofa].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,731,368
Number of extensions: 318723
Number of successful extensions: 874
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 874
Number of HSP's successfully gapped: 32
Length of query: 278
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 180
Effective length of database: 8,904,026
Effective search space: 1602724680
Effective search space used: 1602724680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012869
(836 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_835507.1| histone H2B type 1-M [Mus musculus]. 182 4e-46
Alignment gi|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus]. 180 1e-45
Alignment gi|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus]. 180 1e-45
Alignment gi|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus]. 180 1e-45
Alignment gi|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus]. 180 1e-45
Alignment gi|NP_783597.2| histone H2B type 2-B [Mus musculus]. 179 3e-45
Alignment gi|NP_835504.1| histone H2B type 1-H [Mus musculus]. 179 3e-45
Alignment gi|NP_835509.2| histone H2B type 1-P [Mus musculus]. 177 7e-45
Alignment gi|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus]. 177 7e-45
Alignment gi|NP_835508.1| histone H2B type 1-F/J/L [Mus musculus]. 177 7e-45
>ref|NP_835507.1| histone H2B type 1-M [Mus musculus].
Length = 126
Score = 182 bits (461), Expect = 4e-46
Identities = 98/126 (77%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEPT VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 180 bits (456), Expect = 1e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_783597.2| histone H2B type 2-B [Mus musculus].
Length = 126
Score = 179 bits (453), Expect = 3e-45
Identities = 96/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MP+P VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPDPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_835504.1| histone H2B type 1-H [Mus musculus].
Length = 126
Score = 179 bits (453), Expect = 3e-45
Identities = 96/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP +T ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKALTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_835509.2| histone H2B type 1-P [Mus musculus].
Length = 138
Score = 177 bits (450), Expect = 7e-45
Identities = 96/126 (76%), Positives = 96/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPVKSVPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 7e-45
Identities = 96/126 (76%), Positives = 96/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_835508.1| histone H2B type 1-F/J/L [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 7e-45
Identities = 96/126 (76%), Positives = 96/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIA EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,818,706
Number of extensions: 395545
Number of successful extensions: 1125
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1125
Number of HSP's successfully gapped: 22
Length of query: 278
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 178
Effective length of database: 12,613,959
Effective search space: 2245284702
Effective search space used: 2245284702
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012869
(836 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_619790.1| histone H2B type 1-D [Homo sapiens]. 182 4e-46
Alignment gi|NP_066407.1| histone H2B type 1-D [Homo sapiens]. 182 4e-46
Alignment gi|NP_003511.1| histone H2B type 1-N [Homo sapiens]. 180 1e-45
Alignment gi|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 180 2e-45
Alignment gi|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 180 2e-45
Alignment gi|NP_003517.2| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 180 2e-45
Alignment gi|NP_003516.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 180 2e-45
Alignment gi|NP_003514.2| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 180 2e-45
Alignment gi|NP_003519.1| histone H2B type 2-E [Homo sapiens]. 179 2e-45
Alignment gi|NP_066406.1| histone H2B type 1-B [Homo sapiens]. 179 2e-45
>ref|NP_619790.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 182 bits (461), Expect = 4e-46
Identities = 98/126 (77%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEPT VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_066407.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 182 bits (461), Expect = 4e-46
Identities = 98/126 (77%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEPT VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003511.1| histone H2B type 1-N [Homo sapiens].
Length = 126
Score = 180 bits (457), Expect = 1e-45
Identities = 97/126 (76%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP+ VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003517.2| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003516.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003514.2| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 180 bits (456), Expect = 2e-45
Identities = 97/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYSVYVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_003519.1| histone H2B type 2-E [Homo sapiens].
Length = 126
Score = 179 bits (455), Expect = 2e-45
Identities = 96/126 (76%), Positives = 97/126 (76%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP VT ESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
>ref|NP_066406.1| histone H2B type 1-B [Homo sapiens].
Length = 126
Score = 179 bits (455), Expect = 2e-45
Identities = 95/126 (75%), Positives = 98/126 (77%)
Frame = +2
Query: 47 MPEPTXXXXXXXXXXXXXVTXXXXXXXXXXXXXXXESYSVYVYKVLKQVHPDTGISSKAM 226
MPEP+ +T ESYS+YVYKVLKQVHPDTGISSKAM
Sbjct: 1 MPEPSKSAPAPKKGSKKAITKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM 60
Query: 227 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 406
GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
Query: 407 KYTSSK 424
KYTSSK
Sbjct: 121 KYTSSK 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,245,512
Number of extensions: 464875
Number of successful extensions: 1258
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 22
Length of query: 278
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 177
Effective length of database: 14,967,800
Effective search space: 2649300600
Effective search space used: 2649300600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012869
(836 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 842 0.0
Sscrofa_Chr04 488 e-135
Sscrofa_Chr14 313 8e-83
gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 242 3e-61
Sscrofa_Chr18 143 2e-31
gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 129 3e-27
Sscrofa_ChrX 125 4e-26
gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 113 2e-22
>Sscrofa_Chr07
|| Length = 134764511
Score = 842 bits (425), Expect = 0.0
Identities = 434/437 (99%)
Strand = Plus / Minus
Query: 1 tattttcccaggtgttagccttgcagttctaacttttaacgctgctatgcctgaacccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052982 tattttcccaggtgttagccttgcagttctaacttttaacgctgctatgcctgaacccac 22052923
Query: 61 caaatctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052922 caaatctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaa 22052863
Query: 121 ggatggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggt 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052862 ggatggcaagaagcgaaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggt 22052803
Query: 181 gctgaagcaggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22052802 gctgaagcaggtccacccggacaccggcatctcgtccaaagccatgggcatcatgaactc 22052743
Query: 241 ctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052742 ctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaa 22052683
Query: 301 caagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccgg 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 22052682 caagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccgg 22052623
Query: 361 ggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052622 ggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctc 22052563
Query: 421 caaataaatttgccaag 437
|||||||||||||||||
Sbjct: 22052562 caaataaatttgccaag 22052546
Score = 638 bits (322), Expect = e-180
Identities = 361/374 (96%)
Strand = Plus / Plus
Query: 47 atgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgact 106
||||||||||| | ||||||||||| ||||| || ||||| ||||||||||| |||||
Sbjct: 22089319 atgcctgaaccagcgaaatctgctccagcccccaaaaagggctccaagaaagccgtgacc 22089378
Query: 107 aaggcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgtg 166
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089379 aaggcgcagaagaaagatggcaagaagcgcaagcgcagccgcaaggagagctactccgtg 22089438
Query: 167 tacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccatg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089439 tacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccatg 22089498
Query: 227 ggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089499 ggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcgg 22089558
Query: 287 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089559 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 22089618
Query: 347 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcacc 406
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 22089619 ctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggctgtcacc 22089678
Query: 407 aagtacaccagctc 420
||||||||||||||
Sbjct: 22089679 aagtacaccagctc 22089692
Score = 618 bits (312), Expect = e-174
Identities = 371/397 (93%), Gaps = 1/397 (0%)
Strand = Plus / Minus
Query: 437 ggggagataccagtgcagagaagaaatgaatgcaaacagtaactgaaaatgagaatttgg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22044963 ggggagataccagtgcagagaagaaatgaatgcaaacagtaactgaaaatgagaatttgg 22044904
Query: 497 t-atagaagttatgaagtatgacaactgatctgcccgagatgattgatcattgtgtctat 555
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22044903 tcatagaagttatgaagtatgacaactgatctgcccgagatgattgatcattgtgtctat 22044844
Query: 556 cacactcaaatcccacttatcatgatttactgcacattgatttatcaaaaaggagatcat 615
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 22044843 cacactcaaatcccacttatcatgatttacttcacattgatttatcaaaaaggagatcat 22044784
Query: 616 tcattacctgactggaagagcctaaacaggtgttttaactttttcnnnnnnnnnnnnnnn 675
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22044783 tcattacctgactggaagagcctaaacaggtgttttaactttttcattttatttttattt 22044724
Query: 676 nnnnnnnnaaaatagaatttacttcggttacaggtctaattaccgggaatacattattta 735
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 22044723 aaattatgaaaatagaatttacttctgttacaggtctaattaccgggaatacattattta 22044664
Query: 736 ctctggactacctttgttgggagaaatctgaatgagagaatggcaaaacatctgtaaatc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22044663 ctctggactacctttgttgggagaaatctgaatgagagaatggcaaaacatctgtaaatc 22044604
Query: 796 aaatggtacagttaataaaatctttggataattagaa 832
|||||||||||||||||||||||||||||||||||||
Sbjct: 22044603 aaatggtacagttaataaaatctttggataattagaa 22044567
Score = 615 bits (310), Expect = e-173
Identities = 366/385 (95%)
Strand = Plus / Minus
Query: 47 atgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgact 106
||||||||||| || ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 22032350 atgcctgaaccaacgaaatctgctccagccccgaagaagggctccaagaaagccgtgacc 22032291
Query: 107 aaggcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgtg 166
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22032290 aaggcgcagaaaaaagatggcaagaagcgcaagcgcagccgcaaggagagctactccgtg 22032231
Query: 167 tacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccatg 226
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 22032230 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 22032171
Query: 227 ggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcgg 286
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22032170 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcgg 22032111
Query: 287 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 346
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 22032110 ctggcgcattacaacaagcggtcgaccatcacgtcccgggagatccagacggccgtgcgg 22032051
Query: 347 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcacc 406
|||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 22032050 ctgctgctgcccggngagttggccaagcacgccgtgtctgagggcaccaaggccgttacc 22031991
Query: 407 aagtacaccagctccaaataaattt 431
||||||||||||||||| |||||||
Sbjct: 22031990 aagtacaccagctccaagtaaattt 22031966
Score = 583 bits (294), Expect = e-164
Identities = 345/362 (95%)
Strand = Plus / Minus
Query: 62 aaatctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaag 121
|||||||| || ||||| |||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 23174479 aaatctgccccagccccaaagaagggctccaagaaggcggtgaccaaggcgcagaagaag 23174420
Query: 122 gatggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtg 181
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 23174419 gacggcaagaagcgcaaacgcagccgcaaggagagctactcggtgtacgtgtacaaggtg 23174360
Query: 182 ctgaagcaggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactcc 241
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 23174359 ctgaagcaggtccaccccgacaccggcatctcgtccaaagccatgggcatcatgaattcc 23174300
Query: 242 tttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23174299 tttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaac 23174240
Query: 302 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23174239 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggg 23174180
Query: 362 gagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctcc 421
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| ||
Sbjct: 23174179 gagctggccaagcatgccgtgtccgagggcaccaaggctgtcaccaagtacacaagcgcc 23174120
Query: 422 aa 423
||
Sbjct: 23174119 aa 23174118
Score = 569 bits (287), Expect = e-160
Identities = 356/379 (93%)
Strand = Plus / Plus
Query: 45 ctatgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtga 104
|||||||||| ||| |||| || ||||| ||||| |||||||| |||||||| |||||||
Sbjct: 23110660 ctatgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtga 23110719
Query: 105 ctaaggcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccg 164
| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 23110720 ccaaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcgg 23110779
Query: 165 tgtacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagcca 224
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 23110780 tgtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggcca 23110839
Query: 225 tgggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgc 284
||||||||||||||||||| |||||||||||||| |||||||| || || ||||||||||
Sbjct: 23110840 tgggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgc 23110899
Query: 285 ggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110900 ggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgc 23110959
Query: 345 ggctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtca 404
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 23110960 gcctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtca 23111019
Query: 405 ccaagtacaccagctccaa 423
|||||||||||||||||||
Sbjct: 23111020 ccaagtacaccagctccaa 23111038
Score = 551 bits (278), Expect = e-154
Identities = 341/362 (94%)
Strand = Plus / Minus
Query: 68 gctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaaggatggc 127
||||| ||||| || || || ||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 23086234 gctcctgcccccaaaaaaggctccaagaaagccgtgactaaggcgcagaaaaaggacggc 23086175
Query: 128 aagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaag 187
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 23086174 aagaagcgcaagcgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaag 23086115
Query: 188 caggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactcctttgtc 247
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 23086114 caggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactccttcgtc 23086055
Query: 248 aacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgc 307
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23086054 aacgacatctttgagcgtatcgcgggcgaggcctcgcggctggcgcattacaacaagcgc 23085995
Query: 308 tcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctg 367
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 23085994 tcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggggagttg 23085935
Query: 368 gccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctccaaataa 427
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 23085934 gccaagcacgccgtgtccgagggcaccaaggctgtcaccaagtacaccagctccaagtaa 23085875
Query: 428 at 429
||
Sbjct: 23085874 at 23085873
Score = 547 bits (276), Expect = e-153
Identities = 336/356 (94%)
Strand = Plus / Plus
Query: 68 gctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaaggatggc 127
||||| ||||| || ||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 23097523 gctcctgcccccaaaaagggctccaagaaagcagtgaccaaggcgcagaagaaggacggc 23097582
Query: 128 aagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaag 187
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 23097583 aagaagcgcaagcgcagccgcaaggagagctactcggtgtacgtgtacaaggtgctgaag 23097642
Query: 188 caggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactcctttgtc 247
||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 23097643 caggtccaccccgacaccggcatctcgtccaaggccatgggcatcatgaactcatttgtc 23097702
Query: 248 aacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgc 307
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 23097703 aacgacatctttgagcgcatcgccggcgaggcctcgcggctggcgcattacaacaagcgc 23097762
Query: 308 tcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctg 367
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 23097763 tcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggggagctg 23097822
Query: 368 gccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctccaa 423
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 23097823 gccaagcatgccgtgtctgagggcaccaaggctgtcaccaagtacaccagctccaa 23097878
Score = 256 bits (129), Expect = 2e-65
Identities = 240/277 (86%)
Strand = Plus / Minus
Query: 152 gagagctactccgtgtacgtgtacaaggtgctgaagcaggtccacccggacactggcatc 211
||||||||||| | ||| | ||||||||||||||||| || || || || || || |||
Sbjct: 21770604 gagagctactcaatctacatctacaaggtgctgaagcaagttcatcccgatacaggtatc 21770545
Query: 212 tcgtccaaagccatgggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcg 271
|| || || |||||| |||||||||| || || |||| ||||||||||||||||||||
Sbjct: 21770544 tcttcgaaggccatgagcatcatgaattctttcgtcactgacatcttcgagcgcatcgca 21770485
Query: 272 ggtgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacgtcccgggagatc 331
||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 21770484 agtgaggcgtcgcgcctggcacattacaacaagcgctccacgatcacgtcccgggagatc 21770425
Query: 332 cagacggccgtgcggctgctgctgcccggggagctggccaagcacgccgtgtccgagggc 391
|||||||||||||| ||||| | || |||||| ||||||||||||| ||||||||||||
Sbjct: 21770424 cagacggccgtgcgcttgctgttaccaggggagttggccaagcacgcggtgtccgagggc 21770365
Query: 392 actaaggccgtcaccaagtacaccagctccaaataaa 428
|||||||| ||||||||||||||||||||||| ||||
Sbjct: 21770364 actaaggctgtcaccaagtacaccagctccaagtaaa 21770328
Score = 244 bits (123), Expect = 6e-62
Identities = 282/338 (83%), Gaps = 14/338 (4%)
Strand = Plus / Plus
Query: 80 aagaaggggtccaagaaagcggtgactaaggcgcagaagaaggatggcaagaagcgcaag 139
|||||||| |||||||| |||||||| | ||||||||||||||| ||||||||||||| |
Sbjct: 23188902 aagaagggctccaagaaggcggtgaccagggcgcagaagaaggacggcaagaagcgcagg 23188961
Query: 140 cgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaagcaggtccacccg 199
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 23188962 cgcagccgcaaggagagctactcagtgtacgtgtacaaggtgctgaagcaggtctacccg 23189021
Query: 200 gacactggcatctcgtccaaagccatgggcatcatgaactcctttgtcaacgacatcttc 259
||||| | ||| |||||||||||||||| || || ||||||||| ||
Sbjct: 23189022 gacac--------------aggccgtgggcatcatgaactctttcgttaacgacatcgtc 23189067
Query: 260 gagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacg 319
||||||||| |||| ||||| ||||| |||||||||||||| || ||||||||||| |||
Sbjct: 23189068 gagcgcatcacgggcgaggcatcgcgcctggcgcattacaaaaatcgctcgaccattacg 23189127
Query: 320 tcccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaagcacgcc 379
| | || ||| ||| || |||||| | |||||| ||||||||| ||||||| || ||
Sbjct: 23189128 ttctcgggcatctagatggacgtgcgccagctgcttcccggggagatggccaaacatgct 23189187
Query: 380 gtgtccgagggcactaaggccgtcaccaagtacaccag 417
||||| |||||| | ||| | |||| ||||||||||||
Sbjct: 23189188 gtgtctgagggcgccaagcctgtcagcaagtacaccag 23189225
Score = 123 bits (62), Expect = 2e-25
Identities = 212/262 (80%)
Strand = Plus / Plus
Query: 173 tacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccatgggcatc 232
||||||||||| ||||| || || || || || || || || ||||| |||||| |||||
Sbjct: 21765243 tacaaggtgcttaagcaagttcatccagataccggtatttcttccaaggccatgagcatc 21765302
Query: 233 atgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcg 292
||||| || ||||||| || ||||| ||||||||||| ||||| || ||||| ||||
Sbjct: 21765303 atgaattcgtttgtcactgatatctttgagcgcatcgcaggtgaagcatcgcgtttggca 21765362
Query: 293 cattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctg 352
|| |||| |||||| || || ||||| ||| | |||||||| ||||| ||||| || ||
Sbjct: 21765363 cactacagcaagcgttccactatcacttccagagagatccaaacggctgtgcgtctcttg 21765422
Query: 353 ctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtac 412
||||| || ||| |||||||||| || ||||| |||||||| || || |||||||||||
Sbjct: 21765423 ctgccgggagagttggccaagcatgcagtgtctgagggcaccaaagctgtcaccaagtat 21765482
Query: 413 accagctccaaataaatttgcc 434
|| |||||||| |||| |||||
Sbjct: 21765483 actagctccaagtaaacttgcc 21765504
Score = 71.9 bits (36), Expect = 5e-10
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 148 caaggagagctactccgtgtacgtgtacaaggtgctgaagcagg 191
||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 22094525 caaggagagctactccgtgtaggtgtacgaggtgctgaagcagg 22094482
>Sscrofa_Chr04
|| Length = 143465943
Score = 488 bits (246), Expect = e-135
Identities = 333/362 (91%)
Strand = Plus / Minus
Query: 62 aaatctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaag 121
|||||||||||||| || |||||||| || |||||||| || || || || |||||||||
Sbjct: 108549837 aaatctgctcccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaag 108549778
Query: 122 gatggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtg 181
|| ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 108549777 gacggcaagaagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtg 108549718
Query: 182 ctgaagcaggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactcc 241
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 108549717 ctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactcc 108549658
Query: 242 tttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaac 301
|| ||||||||||||||||||||||||||||| || || || || ||||| |||||||||
Sbjct: 108549657 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 108549598
Query: 302 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggg 361
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 108549597 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 108549538
Query: 362 gagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctcc 421
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 108549537 gagctggccaagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctcc 108549478
Query: 422 aa 423
||
Sbjct: 108549477 aa 108549476
Score = 488 bits (246), Expect = e-135
Identities = 333/362 (91%)
Strand = Plus / Minus
Query: 62 aaatctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaag 121
|||||||||||||| || |||||||| || |||||||| || || || || |||||||||
Sbjct: 108844639 aaatctgctcccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaag 108844580
Query: 122 gatggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtg 181
|| ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 108844579 gacggcaagaagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtg 108844520
Query: 182 ctgaagcaggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactcc 241
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 108844519 ctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactcc 108844460
Query: 242 tttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaac 301
|| ||||||||||||||||||||||||||||| || || || || ||||| |||||||||
Sbjct: 108844459 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 108844400
Query: 302 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggg 361
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 108844399 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 108844340
Query: 362 gagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctcc 421
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 108844339 gagctggccaagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctcc 108844280
Query: 422 aa 423
||
Sbjct: 108844279 aa 108844278
Score = 480 bits (242), Expect = e-133
Identities = 344/378 (91%)
Strand = Plus / Plus
Query: 46 tatgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgac 105
||||||||| ||| |||| || || || || || |||||||| || |||||||| || ||
Sbjct: 108524413 tatgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcac 108524472
Query: 106 taaggcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgt 165
|| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108524473 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108524532
Query: 166 gtacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccat 225
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 108524533 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108524592
Query: 226 gggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcg 285
|||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||
Sbjct: 108524593 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108524652
Query: 286 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 345
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524653 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108524712
Query: 346 gctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcac 405
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 108524713 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108524772
Query: 406 caagtacaccagctccaa 423
||||||||||||||||||
Sbjct: 108524773 caagtacaccagctccaa 108524790
Score = 480 bits (242), Expect = e-133
Identities = 344/378 (91%)
Strand = Plus / Plus
Query: 46 tatgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgac 105
||||||||| ||| |||| || || || || || |||||||| || |||||||| || ||
Sbjct: 108816868 tatgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcac 108816927
Query: 106 taaggcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgt 165
|| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108816928 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108816987
Query: 166 gtacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccat 225
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 108816988 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108817047
Query: 226 gggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcg 285
|||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||
Sbjct: 108817048 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108817107
Query: 286 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 345
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108817108 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108817167
Query: 346 gctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcac 405
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 108817168 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108817227
Query: 406 caagtacaccagctccaa 423
||||||||||||||||||
Sbjct: 108817228 caagtacaccagctccaa 108817245
Score = 480 bits (242), Expect = e-133
Identities = 344/378 (91%)
Strand = Plus / Minus
Query: 46 tatgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgac 105
||||||||| ||| |||| || || || || || |||||||| || |||||||| || ||
Sbjct: 108824576 tatgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcac 108824517
Query: 106 taaggcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgt 165
|| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 108824516 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 108824457
Query: 166 gtacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccat 225
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 108824456 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 108824397
Query: 226 gggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcg 285
|||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||
Sbjct: 108824396 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108824337
Query: 286 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 345
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824336 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108824277
Query: 346 gctgctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcac 405
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 108824276 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108824217
Query: 406 caagtacaccagctccaa 423
||||||||||||||||||
Sbjct: 108824216 caagtacaccagctccaa 108824199
Score = 460 bits (232), Expect = e-127
Identities = 316/344 (91%)
Strand = Plus / Minus
Query: 80 aagaaggggtccaagaaagcggtgactaaggcgcagaagaaggatggcaagaagcgcaag 139
|||||||| || |||||||| || || || || ||||||||||| |||| ||||| |||
Sbjct: 108532087 aagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcagaaagcggaag 108532028
Query: 140 cgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctgaagcaggtccacccg 199
|||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||
Sbjct: 108532027 cgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcaggtgcacccg 108531968
Query: 200 gacactggcatctcgtccaaagccatgggcatcatgaactcctttgtcaacgacatcttc 259
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 108531967 gacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgacatcttc 108531908
Query: 260 gagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgctcgaccatcacg 319
|||||||||||||| || || || || ||||| |||||||||||||||||||||||||||
Sbjct: 108531907 gagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcgaccatcacg 108531848
Query: 320 tcccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaagcacgcc 379
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 108531847 tcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggccaagcacgcc 108531788
Query: 380 gtgtccgagggcactaaggccgtcaccaagtacaccagctccaa 423
|||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 108531787 gtgtccgagggcaccaaggcggtcaccaagtacaccagctccaa 108531744
Score = 404 bits (204), Expect = e-110
Identities = 285/312 (91%)
Strand = Plus / Minus
Query: 112 gcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtacgt 171
|||||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||| ||
Sbjct: 108798220 gcagaagaaggatggcaaaaagcgcaagcgaagccgcaaggaaagttactctgtgtatgt 108798161
Query: 172 gtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccatgggcat 231
||||| |||||||| ||||| || || ||||| |||||||||||||| |||||||||||
Sbjct: 108798160 atacaaagtgctgaaacaggttcatccagacaccggcatctcgtccaaggccatgggcat 108798101
Query: 232 catgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggc 291
|||||||||||| ||||||||||||||||||||||||||||| || || || || |||||
Sbjct: 108798100 catgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggc 108798041
Query: 292 gcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 108798040 tcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgct 108797981
Query: 352 gctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagta 411
||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 108797980 gctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcactaagta 108797921
Query: 412 caccagctccaa 423
|||||| |||||
Sbjct: 108797920 caccagttccaa 108797909
>Sscrofa_Chr14
|| Length = 153851969
Score = 313 bits (158), Expect = 8e-83
Identities = 272/310 (87%)
Strand = Plus / Plus
Query: 65 tctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaaggat 124
|||||||||||||||| ||||| |||||| | | |||||| |||| |||||||||||||
Sbjct: 48725453 tctgctcccgccccgaggaaggtctccaaggatgtggtgaccaaggtgcagaagaaggat 48725512
Query: 125 ggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctg 184
|||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 48725513 ggcaagaagcacaagcacagccacaaggagagctgctccatgtacgtgtacaaggtgctg 48725572
Query: 185 aagcaggtccacccggacactggcatctcgtccaaagccatgggcatcatgaactccttt 244
|||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 48725573 aagcaggtccacccagacactggcatctcatccaaggccatgggcgtcatgaactccttt 48725632
Query: 245 gtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaag 304
|| ||| |||||||||||| ||| | ||||||||| || | |||| ||||||||||||
Sbjct: 48725633 gttaacaacatcttcgagcacattgggggtgaggcatcacacctggtgcattacaacaaa 48725692
Query: 305 cgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggag 364
|||| |||||||| ||| ||| ||||||||||||| || | |||||||||| ||||||
Sbjct: 48725693 tgctcaaccatcacatcctgggtgatccagacggccatgtgcttgctgctgccaggggag 48725752
Query: 365 ctggccaagc 374
||||||||||
Sbjct: 48725753 ctggccaagc 48725762
>gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffold842
Length = 86102
Score = 242 bits (122), Expect = 3e-61
Identities = 266/314 (84%)
Strand = Plus / Plus
Query: 110 gcgcagaagaaggatggcaagaagcgcaagcgcagccgcaaggagagctactccgtgtac 169
|||||||| || |||||||| ||||||||||||||||| || || ||||| ||| | |||
Sbjct: 64209 gcgcagaaaaaagatggcaaaaagcgcaagcgcagccggaaagaaagctattccatctac 64268
Query: 170 gtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccatgggc 229
|||||||| ||| ||||||| || || || ||||| |||||||| || || |||||||||
Sbjct: 64269 gtgtacaaagtgttgaagcaagtacatcccgacacgggcatctcttctaaggccatgggc 64328
Query: 230 atcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctg 289
|| ||||| ||||| |||||||||||||| ||||||||||| | ||||| || || ||
Sbjct: 64329 ataatgaattccttcgtcaacgacatctttgagcgcatcgccagcgaggcttcccgcttg 64388
Query: 290 gcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctg 349
||||| |||||||||||||| ||||||||||| |||||| | ||||| || ||||| |||
Sbjct: 64389 gcgcactacaacaagcgctctaccatcacgtctcgggaggtgcagacagctgtgcgtctg 64448
Query: 350 ctgctgcccggggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaag 409
||| |||| || ||||||||||| ||||||||||| || || || || ||||||||||||
Sbjct: 64449 ctgttgcctggcgagctggccaaacacgccgtgtctgaaggtaccaaagccgtcaccaag 64508
Query: 410 tacaccagctccaa 423
||||| ||||||||
Sbjct: 64509 tacacgagctccaa 64522
>Sscrofa_Chr18
|| Length = 61220071
Score = 143 bits (72), Expect = 2e-31
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 320 tcccgggagatccagacggccgtgcggctgctgctgcccggggagctggccaagcacgcc 379
||||||||| | |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 6385613 tcccgggaggtgcagacggccgtgcgtctgctgctgcctggcgagctggccaagcacgct 6385672
Query: 380 gtgtccgagggcactaaggccgtcaccaagtacaccagctccaa 423
||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 6385673 gtgtctgagggcactaaggctgtcaccaagtacaccagctccaa 6385716
>gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4536
Length = 16885
Score = 129 bits (65), Expect = 3e-27
Identities = 98/109 (89%)
Strand = Plus / Plus
Query: 77 ccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaaggatggcaagaagcgc 136
||||||||||| ||||| || || ||||| |||||||||||||| || ||||||||||||
Sbjct: 498 ccgaagaagggctccaaaaaggctgtgaccaaggcgcagaagaaagacggcaagaagcgc 557
Query: 137 aagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtgctga 185
|||||||| ||||||||||| |||||| | |||||||||||||||||||
Sbjct: 558 aagcgcagtcgcaaggagagttactccatctacgtgtacaaggtgctga 606
Score = 85.7 bits (43), Expect = 4e-14
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 194 cacccggacactggcatctcgtccaaagccatgggcatcatgaactcctttgtcaacgac 253
|||||||| || ||||| || ||||| || |||||||||||||| || || || || |||
Sbjct: 711 cacccggataccggcatttcctccaaggctatgggcatcatgaattcgttcgttaatgac 770
Query: 254 atcttcgagcgcatcgcgggtgaggcctcgcggctggcgcatt 296
|| ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 771 attttcgaacgcatcgctggcgaggcctcgcggctggcgcatt 813
>Sscrofa_ChrX
|| Length = 144288218
Score = 125 bits (63), Expect = 4e-26
Identities = 147/175 (84%)
Strand = Plus / Minus
Query: 251 gacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgctcg 310
||||| |||||||||||||| | || ||| | || ||||| || | ||||||||||||
Sbjct: 98778104 gacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaacaagcgctcc 98778045
Query: 311 accatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctggcc 370
|||||||||||| ||||||||||||| | ||||| |||||||||||||||||||| | |
Sbjct: 98778044 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctcggc 98777985
Query: 371 aagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctccaaat 425
| |||||||||||||| || ||| |||||||||| || ||||||| || |||||
Sbjct: 98777984 aggcacgccgtgtccgtggccaccaaggccgtcatcagatacaccacctgcaaat 98777930
Score = 119 bits (60), Expect = 3e-24
Identities = 111/128 (86%)
Strand = Plus / Plus
Query: 298 caacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcggctgctgctgcc 357
|||||||||||| |||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct: 98521180 caacaagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcc 98521239
Query: 358 cggggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccag 417
||||||||| | || |||||||||||||| || ||| |||||||||| || |||||||
Sbjct: 98521240 cggggagctcggcaggcacgccgtgtccgtggccaccaaggccgtcatcagatacaccac 98521299
Query: 418 ctccaaat 425
|| |||||
Sbjct: 98521300 ctgcaaat 98521307
Score = 115 bits (58), Expect = 4e-23
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 251 gacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgctcg 310
||||| |||||||||||||| | || ||| | || ||||| || | ||||||||||||
Sbjct: 98547505 gacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaacaagcgctcc 98547446
Query: 311 accatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctggcc 370
|||||||||||| ||||||||||||| | ||||| |||||||||||||||||||| |
Sbjct: 98547445 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctccgc 98547386
Query: 371 aagcacgccgtgtccgagggcactaaggccgtca 404
||||||||| |||||| || ||| ||||||||||
Sbjct: 98547385 aagcacgccatgtccgtggccaccaaggccgtca 98547352
Score = 115 bits (58), Expect = 4e-23
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 251 gacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaacaagcgctcg 310
||||| |||||||||||||| | || ||| | || ||||| || | ||||||||||||
Sbjct: 98752821 gacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaacaagcgctcc 98752880
Query: 311 accatcacgtcccgggagatccagacggccgtgcggctgctgctgcccggggagctggcc 370
|||||||||||| ||||||||||||| | ||||| |||||||||||||||||||| |
Sbjct: 98752881 accatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggggagctccgc 98752940
Query: 371 aagcacgccgtgtccgagggcactaaggccgtca 404
||||||||| |||||| || ||| ||||||||||
Sbjct: 98752941 aagcacgccatgtccgtggccaccaaggccgtca 98752974
>gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2573
Length = 41526
Score = 113 bits (57), Expect = 2e-22
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 47 atgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgact 106
||||||||||| | ||||||||||| ||||| || ||||| ||||||||||| |||||
Sbjct: 16575 atgcctgaaccagcgaaatctgctccagcccccaaaaagggctccaagaaagccgtgacc 16634
Query: 107 aaggcgcagaagaaggatggcaagaagcgcaagcgca 143
|||||||||||||| ||||||||||||||||||||||
Sbjct: 16635 aaggcgcagaagaaagatggcaagaagcgcaagcgca 16671
Score = 103 bits (52), Expect = 2e-19
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 360 gggagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagct 419
||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 35340 gggagttggccaagcacgccgtgtctgagggcaccaaggccgttaccaagtacaccagct 35281
Query: 420 ccaaataaattt 431
|||| |||||||
Sbjct: 35280 ccaagtaaattt 35269
Score = 93.7 bits (47), Expect = 1e-16
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 47 atgcctgaacccaccaaatctgctcccgccccgaagaaggggtccaagaaagcggtgact 106
||||||||||| || ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 35512 atgcctgaaccaacgaaatctgctccagccccgaagaagggctccaagaaagccgtgacc 35453
Query: 107 aaggcgcagaa 117
|||||||||||
Sbjct: 35452 aaggcgcagaa 35442
Score = 71.9 bits (36), Expect = 5e-10
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 148 caaggagagctactccgtgtacgtgtacaaggtgctgaagcagg 191
||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 21582 caaggagagctactccgtgtaggtgtacgaggtgctgaagcagg 21539
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,899,536
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 34
Length of query: 836
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 815
Effective length of database: 2,808,413,156
Effective search space: 2288856722140
Effective search space used: 2288856722140
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)