Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012872
(1123 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029590.1| capZ-interacting protein [Bos taurus]. 408 e-114
Alignment gi|NP_001192696.1| family with sequence similarity 21, member A... 57 2e-08
Alignment gi|XP_002699020.1| PREDICTED: hypothetical protein [Bos taurus]. 57 2e-08
>ref|NP_001029590.1| capZ-interacting protein [Bos taurus].
Length = 381
Score = 408 bits (1048), Expect = e-114
Identities = 209/276 (75%), Positives = 222/276 (80%)
Frame = +1
Query: 295 MEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRKPPCSLSLFPPKVEL 474
MEERPA+TNA VDDSA PSVAQLAGRFREQAAAAKETPAS+PTRRKPPCSL LFP KVEL
Sbjct: 1 MEERPAQTNAIVDDSAPPSVAQLAGRFREQAAAAKETPASKPTRRKPPCSLPLFPSKVEL 60
Query: 475 GQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXX 654
GQNGEEKS P+ANHPPK+KVKSSPLIEKLQANL FDPAALLPGASPKSPG KAMV
Sbjct: 61 GQNGEEKSLPSANHPPKVKVKSSPLIEKLQANLVFDPAALLPGASPKSPGFKAMVSPFHS 120
Query: 655 XXXXXXXXGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIKXXXXXXXXXXXQSD 834
GVRSR SEPEE PVSFDQPPEGSHLPCYNKVRTRGSIK QSD
Sbjct: 121 PPSTPSSPGVRSRPSEPEEVPVSFDQPPEGSHLPCYNKVRTRGSIKRRPPSRRFRRSQSD 180
Query: 835 CGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSPPQSRMSSRTEKPEEKGRAAEKAQ 1014
CG+LG+FRAVE SQENGAKEE+GDEVFPAK KAPGSPP R SSRTEK EEK RA +AQ
Sbjct: 181 CGELGEFRAVEPSQENGAKEESGDEVFPAKSKAPGSPPLRRTSSRTEKLEEKSRAVGEAQ 240
Query: 1015 QPEKAMGNSEEGAGQRPSPSLRPKREDASGSPTEEK 1122
+PEK G SEEGAGQ P+ + + ED GSP EE+
Sbjct: 241 EPEKIAGGSEEGAGQHPARASSSEAEDGCGSPKEER 276
>ref|NP_001192696.1| family with sequence similarity 21, member A [Bos taurus].
Length = 1333
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +1
Query: 487 EEKSPPTANHPPKMKVKS-SPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXXXXX 663
+ ++P + P +K K SP I K+QANLA +PAALLP A+P+ G+K+++
Sbjct: 929 KSETPQDSPGPAPLKTKEPSPRIWKIQANLAINPAALLPPAAPQISGMKSVLPESGAPSS 988
Query: 664 XXXXXGVRSRASEPE---EPPVSFDQPPEGSHLPCYNK--VRTRGSIKXXXXXXXXXXXQ 828
R P E VSFD P + L C NK V+ RG + Q
Sbjct: 989 EPGRMQSLDRVPTPPGSGEAGVSFDLPAQADTLHCANKTRVKVRGKRRPQTRAARHLAAQ 1048
Query: 829 --SDCGDLGDFRAVESSQENGAKEENG 903
++ D+G R + +GA +G
Sbjct: 1049 ESTEAEDVGSPRGFVAQLTDGATSPDG 1075
>ref|XP_002699020.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1333
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +1
Query: 487 EEKSPPTANHPPKMKVKS-SPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXXXXX 663
+ ++P + P +K K SP I K+QANLA +PAALLP A+P+ G+K+++
Sbjct: 929 KSETPQDSPGPAPLKTKEPSPRIWKIQANLAINPAALLPPAAPQISGMKSVLPESGAPSS 988
Query: 664 XXXXXGVRSRASEPE---EPPVSFDQPPEGSHLPCYNK--VRTRGSIKXXXXXXXXXXXQ 828
R P E VSFD P + L C NK V+ RG + Q
Sbjct: 989 EPGRMQSLDRVPTPPGSGEAGVSFDLPAQADTLHCANKTRVKVRGKRRPQTRAARHLAAQ 1048
Query: 829 --SDCGDLGDFRAVESSQENGAKEENG 903
++ D+G R + +GA +G
Sbjct: 1049 ESTEAEDVGSPRGFVAQLTDGATSPDG 1075
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,820,063
Number of extensions: 1291636
Number of successful extensions: 7378
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7228
Number of HSP's successfully gapped: 3
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012872
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012872
(1123 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537212.2| PREDICTED: similar to protein kinase substrate ... 361 e-100
>ref|XP_537212.2| PREDICTED: similar to protein kinase substrate MK2S4 [Canis
familiaris].
Length = 399
Score = 361 bits (927), Expect = e-100
Identities = 195/300 (65%), Positives = 213/300 (71%), Gaps = 29/300 (9%)
Frame = +1
Query: 310 AETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRKPPCSLSLFPPKVELGQNGE 489
+E +A VD+SA PSVAQLAG FREQAAAAKETPA +PTRRKPPCSL LFPPKVELGQNGE
Sbjct: 9 SEPSAKVDESAPPSVAQLAGLFREQAAAAKETPACKPTRRKPPCSLPLFPPKVELGQNGE 68
Query: 490 EKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXXXXXXX 669
EKSP A+HPPK+KVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKA+V
Sbjct: 69 EKSPSNASHPPKVKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAVVSPFQSPPSTP 128
Query: 670 XXXGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIKXXXXXXXXXXXQSDCGDLG 849
GVR +A EPEE PVSFDQPPEGSHLPCYNKVRTRGSIK QSDCG+LG
Sbjct: 129 SSPGVRPQAGEPEEVPVSFDQPPEGSHLPCYNKVRTRGSIKRRPPSRRFRRSQSDCGELG 188
Query: 850 DFRAVESSQENGAKEENGDEVFPAKGKAPGS---------------------PPQSRMSS 966
D+RA ESSQENGAKEENGDEVF +K KAPGS PP R SS
Sbjct: 189 DYRAPESSQENGAKEENGDEVFSSKSKAPGSPAPSQGPVGEEAGRPPGAQEKPPLRRTSS 248
Query: 967 RTEKPEEKGRAAEKAQQPEKAMGNSEEGAGQRPSP--------SLRPKREDASGSPTEEK 1122
RTEK EE G+A ++AQ KAMG SEE AG P+ + P+ + GSPTEEK
Sbjct: 249 RTEKQEETGKAQDEAQHHPKAMGGSEEEAGPPPAANEAVPAALASSPEAANGCGSPTEEK 308
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,829,912
Number of extensions: 1332809
Number of successful extensions: 7956
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7852
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012872
(1123 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928959.2| PREDICTED: capZ-interacting protein [Sus scr... 535 e-152
>ref|XP_001928959.2| PREDICTED: capZ-interacting protein [Sus scrofa].
Length = 472
Score = 535 bits (1377), Expect = e-152
Identities = 277/350 (79%), Positives = 284/350 (81%), Gaps = 1/350 (0%)
Frame = +1
Query: 76 FIHYL-LKAFLVL*LRTRADGXXXXXXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXSPGP 252
F+H L ++ +L LRTRADG NP SPGP
Sbjct: 18 FVHSLFIEGLELLMLRTRADGAVPQPASRARRRPLALCPPQPNPARAGAERRARIASPGP 77
Query: 253 SERARPPPSRHLEDMEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRK 432
SERARPPPSRHLEDMEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRK
Sbjct: 78 SERARPPPSRHLEDMEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRK 137
Query: 433 PPCSLSLFPPKVELGQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASP 612
PPCSLSLFPPKVELGQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASP
Sbjct: 138 PPCSLSLFPPKVELGQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASP 197
Query: 613 KSPGLKAMVXXXXXXXXXXXXXGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIK 792
KSPGLKAMV GVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIK
Sbjct: 198 KSPGLKAMVSPFHSPPSTPSSPGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIK 257
Query: 793 XXXXXXXXXXXQSDCGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSPPQSRMSSRT 972
QSDCGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSPPQSRMSSRT
Sbjct: 258 RRPPSRRFRRSQSDCGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSPPQSRMSSRT 317
Query: 973 EKPEEKGRAAEKAQQPEKAMGNSEEGAGQRPSPSLRPKREDASGSPTEEK 1122
EKPEEKGRAAEKAQQPEKAMGNSEEGAGQRP+ + P+REDASGSPTEEK
Sbjct: 318 EKPEEKGRAAEKAQQPEKAMGNSEEGAGQRPAQASSPEREDASGSPTEEK 367
Score = 55.5 bits (132), Expect = 5e-08
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 21 MEKVSTLDLKAEILLICFVHSLFIEGL 101
MEKVSTLDLKAEILLICFVHSLFIEGL
Sbjct: 1 MEKVSTLDLKAEILLICFVHSLFIEGL 27
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,404,414
Number of extensions: 840922
Number of successful extensions: 4769
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4698
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012872
(1123 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848708.2| capZ-interacting protein isoform a [Mus musculu... 341 5e-94
Alignment gi|NP_001033935.1| capZ-interacting protein isoform b [Mus musc... 266 2e-71
>ref|NP_848708.2| capZ-interacting protein isoform a [Mus musculus].
Length = 412
Score = 341 bits (875), Expect = 5e-94
Identities = 186/301 (61%), Positives = 208/301 (69%), Gaps = 26/301 (8%)
Frame = +1
Query: 295 MEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRKPPCSLSLFPPKVEL 474
MEERP+ETN+NVD SA PSVAQLAGRFRE AA A+ETPAS+PTRRKPPCSL LFPPKVEL
Sbjct: 1 MEERPSETNSNVDSSAQPSVAQLAGRFREHAAVARETPASKPTRRKPPCSLPLFPPKVEL 60
Query: 475 GQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXX 654
GQNGEEKSP A+HPPK+KVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKA+V
Sbjct: 61 GQNGEEKSPSGASHPPKIKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAIVSPFHS 120
Query: 655 XXXXXXXXGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIKXXXXXXXXXXXQSD 834
G+RS SE EE PVSFDQPPEG+HLP YNKVRTRGSIK QSD
Sbjct: 121 PPSTPSSPGIRSHPSEAEEVPVSFDQPPEGTHLPSYNKVRTRGSIKRRPPSRRFRRSQSD 180
Query: 835 CGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSP--------------------PQS 954
CGD D+RAVE SQENGA+EENGD+VF +K K PGSP P+
Sbjct: 181 CGDFRDYRAVEPSQENGAREENGDDVFASKSKDPGSPQLNQEAMADGVEGTPWSAEKPRR 240
Query: 955 RMS-SRTEKPEEKGRAAEKAQQPEKAMGNSEEGAG-----QRPSPSLRPKREDASGSPTE 1116
R + + TEKPEE R E+A EK N + + Q PS + P+ E+ GSP E
Sbjct: 241 RNTCNSTEKPEELVRTPEEANAGEKVGQNPDTASQGHPEVQAPSQTGSPEAENGCGSPRE 300
Query: 1117 E 1119
E
Sbjct: 301 E 301
>ref|NP_001033935.1| capZ-interacting protein isoform b [Mus musculus].
Length = 382
Score = 266 bits (680), Expect = 2e-71
Identities = 158/301 (52%), Positives = 179/301 (59%), Gaps = 26/301 (8%)
Frame = +1
Query: 295 MEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRKPPCSLSLFPPKVEL 474
MEERP+ETN+NVD SA PSVAQLAGRFRE AA A+
Sbjct: 1 MEERPSETNSNVDSSAQPSVAQLAGRFREHAAVAR------------------------- 35
Query: 475 GQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXX 654
EKSP A+HPPK+KVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKA+V
Sbjct: 36 -----EKSPSGASHPPKIKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAIVSPFHS 90
Query: 655 XXXXXXXXGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIKXXXXXXXXXXXQSD 834
G+RS SE EE PVSFDQPPEG+HLP YNKVRTRGSIK QSD
Sbjct: 91 PPSTPSSPGIRSHPSEAEEVPVSFDQPPEGTHLPSYNKVRTRGSIKRRPPSRRFRRSQSD 150
Query: 835 CGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSP--------------------PQS 954
CGD D+RAVE SQENGA+EENGD+VF +K K PGSP P+
Sbjct: 151 CGDFRDYRAVEPSQENGAREENGDDVFASKSKDPGSPQLNQEAMADGVEGTPWSAEKPRR 210
Query: 955 RMS-SRTEKPEEKGRAAEKAQQPEKAMGNSEEGAG-----QRPSPSLRPKREDASGSPTE 1116
R + + TEKPEE R E+A EK N + + Q PS + P+ E+ GSP E
Sbjct: 211 RNTCNSTEKPEELVRTPEEANAGEKVGQNPDTASQGHPEVQAPSQTGSPEAENGCGSPRE 270
Query: 1117 E 1119
E
Sbjct: 271 E 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,360,097
Number of extensions: 1054256
Number of successful extensions: 5567
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5479
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012872
(1123 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_443094.3| capZ-interacting protein [Homo sapiens]. 377 e-104
>ref|NP_443094.3| capZ-interacting protein [Homo sapiens].
Length = 416
Score = 377 bits (967), Expect = e-104
Identities = 207/304 (68%), Positives = 220/304 (72%), Gaps = 28/304 (9%)
Frame = +1
Query: 295 MEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRKPPCSLSLFPPKVEL 474
MEERPAETNANVD+SA PSVAQLAGRFREQAAAAKETPAS+PTRRKPPCSL LFPPKV+L
Sbjct: 1 MEERPAETNANVDNSASPSVAQLAGRFREQAAAAKETPASKPTRRKPPCSLPLFPPKVDL 60
Query: 475 GQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAMVXXXXX 654
GQNGEEKSPP A+HPPK KVKSSPLIEKLQANL FDPAALLPGASPKSPGLKAMV
Sbjct: 61 GQNGEEKSPPNASHPPKFKVKSSPLIEKLQANLTFDPAALLPGASPKSPGLKAMVSPFHS 120
Query: 655 XXXXXXXXGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIKXXXXXXXXXXXQSD 834
GVRSR SE EE PVSFDQPPEGSHLPCYNKVRTRGSIK QSD
Sbjct: 121 PPSTPSSPGVRSRPSEAEEVPVSFDQPPEGSHLPCYNKVRTRGSIKRRPPSRRFRRSQSD 180
Query: 835 CGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGS--------------------PPQS 954
CG+LGDFRAVESSQ+NGAKEE+GDEV P+K KAPGS PP
Sbjct: 181 CGELGDFRAVESSQQNGAKEEDGDEVLPSKSKAPGSPLSSEGAAGEGVRTLGPAEKPPLR 240
Query: 955 RMSSRTEKPEEKGRAAEKAQQPEKAMGNSEEGAGQRP-------SPSLR-PKREDASGSP 1110
R SRTEK EE RA E+A+ EKA +SEE GQ P SP P+ E+ GSP
Sbjct: 241 RSPSRTEKQEE-DRATEEAKNGEKARRSSEEVDGQHPAQEEVPESPQTSGPEAENRCGSP 299
Query: 1111 TEEK 1122
EEK
Sbjct: 300 REEK 303
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,666,760
Number of extensions: 1288973
Number of successful extensions: 7103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6990
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012872
(1123 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 654 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 654 bits (330), Expect = 0.0
Identities = 353/358 (98%), Gaps = 2/358 (0%)
Strand = Plus / Minus
Query: 767 aggtgcggacgaggggctccattaaaaggcgccctccctccaggcgattccgaaggtccc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91010731 aggtgcggacgaggggctccattaaaaggcgccctccctccaggcgattccgaaggtccc 91010672
Query: 827 agtcggactgtggggacctgggggacttcagggcagtggagtcctcccaggagaatggtg 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91010671 agtcggactgtggggacctgggggacttcagggcagtggagtcctcccaggagaatggtg 91010612
Query: 887 ccaaggaagaaaacggggatgaggtgttcccagccaagggcaaggccccaggatcccctc 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91010611 ccaaggaagaaaacggggatgaggtgttcccagccaagggcaaggccccaggatcccctc 91010552
Query: 947 ctcagagccggatgtccagcaggacagagaagccagaggagaagggcagggcggcagaaa 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 91010551 ctcagagccggatgtccagcaggacagagaagccagaggagaagggcagggcggcagaga 91010492
Query: 1007 aagcccagcagcccgagaaggccatggggaactccgaggagggggcaggccagcgtccaa 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 91010491 aagcccagcagcccgagaaggccatggggaactccgaggagggggcaggccagcgtcc-a 91010433
Query: 1067 gcccaagcctcaggccca-aaagagaggatgcaagtgggagtcccacggaggagaaac 1123
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 91010432 gcccaagcctccagcccagaaagagaggatgcaagtgggagtcccacggaggagaaac 91010375
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Minus
Query: 562 caggccaatttagcctttgatccagctgccctgctgcctggggcatcacccaagagtcct 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91013105 caggccaatttagcctttgatccagctgccctgctgcctggggcatcacccaagagtcct 91013046
Query: 622 ggtcttaaggccatggtgtcaccatttcacagcccaccttctacccccagcagccctggc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91013045 ggtcttaaggccatggtgtcaccatttcacagcccaccttctacccccagcagccctggc 91012986
Query: 682 gtgcgctctcgggccagtgagcctgaggaaccacccgtcagcttcgaccagcctcctgaa 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91012985 gtgcgctctcgggccagtgagcctgaggaaccacccgtcagcttcgaccagcctcctgaa 91012926
Query: 742 ggcagccatctgccctgttacaacaaggt 770
|||||||||||||||||||||||||||||
Sbjct: 91012925 ggcagccatctgccctgttacaacaaggt 91012897
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 98 ccttcctcgttctctagctcaggaccagggcagacggggcagtcccgcagccagcgagcc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91076131 ccttcctcgttctctagctcaggaccagggcagacggggcagtcccgcagccagcgagcc 91076072
Query: 158 gggcgcgccgccgcccacttgcgctgtgcccgccgcagccgaacccggcccgggcgggag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91076071 gggcgcgccgccgcccacttgcgctgtgcccgccgcagccgaacccggcccgggcgggag 91076012
Query: 218 ccgagcggagagcgaggatcgcgagcccaggcccgagtgagcgcgctcggccgccgccga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91076011 ccgagcggagagcgaggatcgcgagcccaggcccgagtgagcgcgctcggccgccgccga 91075952
Query: 278 gtcggcacctggaggacatggagg 301
||||||||||||||||||||||||
Sbjct: 91075951 gtcggcacctggaggacatggagg 91075928
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 299 aggaaaggccagcagagaccaacgccaatgtggacgactcggcgctcccctcggtggccc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91023954 aggaaaggccagcagagaccaacgccaatgtggacgactcggcgctcccctcggtggccc 91023895
Query: 359 agctggctgggcggtttagggaacaggcagccgctgcaaaggag 402
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91023894 agctggctgggcggtttagggaacaggcagccgctgcaaaggag 91023851
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 2 tcccactggagacctacctatggaaaaagtctctacccttgatttaaaggcagagatcct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91079866 tcccactggagacctacctatggaaaaagtctctacccttgatttaaaggcagagatcct 91079807
Query: 62 attaatttgcttcgttcattcactatttattgaaggcct 100
|||||||||||||||||||||||||||||||||||||||
Sbjct: 91079806 attaatttgcttcgttcattcactatttattgaaggcct 91079768
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 491 agaagtcaccacccactgcaaaccaccctcctaaaatgaaggtgaagagctcgcctctga 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91017730 agaagtcaccacccactgcaaaccaccctcctaaaatgaaggtgaagagctcgcctctga 91017671
Query: 551 ttgagaagcttcagg 565
|||||||||||||||
Sbjct: 91017670 ttgagaagcttcagg 91017656
Score = 141 bits (71), Expect = 9e-31
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 401 agacaccagccagtagaccaacaagaaggaaaccaccctgctccctctctctgttnnnnn 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91022455 agacaccagccagtagaccaacaagaaggaaaccaccctgctccctctctctgttccccc 91022396
Query: 461 nnaaggtagagctgggccagaatggtgaggag 492
||||||||||||||||||||||||||||||
Sbjct: 91022395 ccaaggtagagctgggccagaatggtgaggag 91022364
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,538,555
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 7
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)