Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012877
(1464 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193266.1| ribonuclease T2 [Bos taurus]. 334 1e-91
>ref|NP_001193266.1| ribonuclease T2 [Bos taurus].
Length = 247
Score = 334 bits (857), Expect = 1e-91
Identities = 157/225 (69%), Positives = 178/225 (79%), Gaps = 1/225 (0%)
Frame = +2
Query: 293 SGDHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPDEIKG 472
S D EW KLIMVHHWP TVC EVA +C+ PP+YWTIHGLWPDKS CNRSWPFNP EIK
Sbjct: 26 SDDLEWSKLIMVHHWPATVCQEVARHCKDPPNYWTIHGLWPDKSEACNRSWPFNPHEIKD 85
Query: 473 LLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYKELAL 652
LLPDM++YWPD+LH S N S+ FW HEW+KHGTCAAQLDALNSQRKYFGK+LDLYK LAL
Sbjct: 86 LLPDMKMYWPDLLHPS-NSSLQFWSHEWKKHGTCAAQLDALNSQRKYFGKSLDLYKALAL 144
Query: 653 NSTLQKLGIKPSIS-YYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCLTRD 829
S LQKLGI+PS YYQ+SDI+ ALV VY VVPKVQC + G++VQ LGQ+ELC ++D
Sbjct: 145 TSMLQKLGIEPSTDHYYQVSDIRDALVTVYKVVPKVQCFLLEKGQEVQLLGQVELCFSKD 204
Query: 830 LQLQDCPEPGEPAPQRQEAGPGGTPILGLEICEDGPVFYPPPKET 964
LQLQ+C EPA +RQEA P LGL +C DGPV YPP ET
Sbjct: 205 LQLQNCSHAAEPAARRQEAWPN----LGLHVCNDGPVLYPPLNET 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,352,257
Number of extensions: 2053212
Number of successful extensions: 10464
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10420
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 382
Effective length of database: 14,174,046
Effective search space: 5414485572
Effective search space used: 5414485572
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012877
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012877
(1464 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855271.1| PREDICTED: similar to Ribonuclease T2 precursor... 285 1e-76
>ref|XP_855271.1| PREDICTED: similar to Ribonuclease T2 precursor (Ribonuclease 6)
[Canis familiaris].
Length = 220
Score = 285 bits (728), Expect = 1e-76
Identities = 128/185 (69%), Positives = 155/185 (83%)
Frame = +2
Query: 356 EVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPDEIKGLLPDMRLYWPDVLHSSPNHSV 535
EV N+C PPDYWTIHGLWPDK+ ECN SW F+ +EIK L+P+M++YWPDV+H NHS
Sbjct: 9 EVENDCRDPPDYWTIHGLWPDKAEECNGSWHFHLEEIKDLMPEMKMYWPDVIHPL-NHS- 66
Query: 536 HFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYKELALNSTLQKLGIKPSISYYQISDI 715
HFW+HEWEKHGTCAAQLDALNSQ+KYFG +LDLY++L LNS LQKLGIKPSI+YYQ+SDI
Sbjct: 67 HFWKHEWEKHGTCAAQLDALNSQKKYFGGSLDLYRDLDLNSMLQKLGIKPSINYYQVSDI 126
Query: 716 KHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCLTRDLQLQDCPEPGEPAPQRQEAGPG 895
K AL G+YGV+PK+QCLPP+ GE+VQT+GQIELC T++L+L++C EPGEP GPG
Sbjct: 127 KDALAGIYGVIPKIQCLPPQQGEEVQTIGQIELCFTKELRLRNCTEPGEP------GGPG 180
Query: 896 GTPIL 910
G L
Sbjct: 181 GRDAL 185
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,945,364
Number of extensions: 2109498
Number of successful extensions: 11023
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10954
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 381
Effective length of database: 15,307,552
Effective search space: 5832177312
Effective search space used: 5832177312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012877
(1464 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928120.2| PREDICTED: ribonuclease T2 isoform 1 [Sus sc... 507 e-144
>ref|XP_001928120.2| PREDICTED: ribonuclease T2 isoform 1 [Sus scrofa].
Length = 250
Score = 507 bits (1306), Expect = e-144
Identities = 229/230 (99%), Positives = 230/230 (100%)
Frame = +2
Query: 281 RELWSGDHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPD 460
RELWSGDHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPD
Sbjct: 21 RELWSGDHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPD 80
Query: 461 EIKGLLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYK 640
EIKGLLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYK
Sbjct: 81 EIKGLLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYK 140
Query: 641 ELALNSTLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCL 820
ELALNSTLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCL
Sbjct: 141 ELALNSTLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCL 200
Query: 821 TRDLQLQDCPEPGEPAPQRQEAGPGGTPILGLEICEDGPVFYPPPKETNH 970
TRDLQLQDCPEPGEPAPQR+EAGPGGTPILGLEICEDGPVFYPPPKETNH
Sbjct: 201 TRDLQLQDCPEPGEPAPQRREAGPGGTPILGLEICEDGPVFYPPPKETNH 250
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,999,948
Number of extensions: 1334019
Number of successful extensions: 6815
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6782
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 385
Effective length of database: 8,779,541
Effective search space: 3380123285
Effective search space used: 3380123285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012877
(1464 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077407.1| ribonuclease T2 precursor [Mus musculus]. 328 7e-90
Alignment gi|NP_080887.1| ribonuclease T2B [Mus musculus]. 328 7e-90
>ref|NP_001077407.1| ribonuclease T2 precursor [Mus musculus].
Length = 259
Score = 328 bits (841), Expect = 7e-90
Identities = 149/230 (64%), Positives = 180/230 (78%), Gaps = 2/230 (0%)
Frame = +2
Query: 287 LWSGDHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPDEI 466
LWSG HEWKKLI+ HWP TVC EV N+C+ DYWTIHGLWPD++ +CN+SW FN DEI
Sbjct: 32 LWSGSHEWKKLILTQHWPPTVCKEV-NSCQDSLDYWTIHGLWPDRAEDCNQSWHFNLDEI 90
Query: 467 KGLLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYKEL 646
K LL DM++YWPDV+H S N S FW+HEW KHGTCAAQ+DALNS++KYFGK+LDLYK++
Sbjct: 91 KDLLRDMKIYWPDVIHRSSNRS-QFWKHEWVKHGTCAAQVDALNSEKKYFGKSLDLYKQI 149
Query: 647 ALNSTLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCLTR 826
LNS LQK GIKPSI+YYQ++D K AL +YGVVPK+QCL P+ GE VQT+GQIELC T+
Sbjct: 150 DLNSVLQKFGIKPSINYYQLADFKDALTRIYGVVPKIQCLMPEQGESVQTVGQIELCFTK 209
Query: 827 -DLQLQDCPEPGEPAPQRQEAGPG-GTPILGLEICEDGPVFYPPPKETNH 970
DL L++C EPGE RQEA G+ +CEDGP+FYPPP +T H
Sbjct: 210 EDLHLRNCTEPGEQLSSRQEAWLAMEASTHGMMVCEDGPIFYPPPTKTQH 259
>ref|NP_080887.1| ribonuclease T2B [Mus musculus].
Length = 259
Score = 328 bits (841), Expect = 7e-90
Identities = 149/230 (64%), Positives = 180/230 (78%), Gaps = 2/230 (0%)
Frame = +2
Query: 287 LWSGDHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPDEI 466
LWSG HEWKKLI+ HWP TVC EV N+C+ DYWTIHGLWPD++ +CN+SW FN DEI
Sbjct: 32 LWSGSHEWKKLILTQHWPPTVCKEV-NSCQDSLDYWTIHGLWPDRAEDCNQSWHFNLDEI 90
Query: 467 KGLLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYKEL 646
K LL DM++YWPDV+H S N S FW+HEW KHGTCAAQ+DALNS++KYFGK+LDLYK++
Sbjct: 91 KDLLRDMKIYWPDVIHRSSNRS-QFWKHEWVKHGTCAAQVDALNSEKKYFGKSLDLYKQI 149
Query: 647 ALNSTLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCLTR 826
LNS LQK GIKPSI+YYQ++D K AL +YGVVPK+QCL P+ GE VQT+GQIELC T+
Sbjct: 150 DLNSVLQKFGIKPSINYYQLADFKDALTRIYGVVPKIQCLMPEQGESVQTVGQIELCFTK 209
Query: 827 -DLQLQDCPEPGEPAPQRQEAGPG-GTPILGLEICEDGPVFYPPPKETNH 970
DL L++C EPGE RQEA G+ +CEDGP+FYPPP +T H
Sbjct: 210 EDLHLRNCTEPGEQLSSRQEAWLAMEASTHGMMVCEDGPIFYPPPTKTQH 259
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,134,458
Number of extensions: 1681910
Number of successful extensions: 7804
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7760
Number of HSP's successfully gapped: 2
Length of query: 488
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 383
Effective length of database: 12,463,779
Effective search space: 4773627357
Effective search space used: 4773627357
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012877
(1464 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003721.2| ribonuclease T2 precursor [Homo sapiens]. 349 4e-96
>ref|NP_003721.2| ribonuclease T2 precursor [Homo sapiens].
Length = 256
Score = 349 bits (895), Expect = 4e-96
Identities = 157/227 (69%), Positives = 183/227 (80%), Gaps = 3/227 (1%)
Frame = +2
Query: 299 DHEWKKLIMVHHWPMTVCNEVANNCEHPPDYWTIHGLWPDKSGECNRSWPFNPDEIKGLL 478
+HEWKKLIMV HWP TVC ++ N+C PPDYWTIHGLWPDKS CNRSWPFN +EIK LL
Sbjct: 31 NHEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLWPDKSEGCNRSWPFNLEEIKDLL 90
Query: 479 PDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYKELALNS 658
P+MR YWPDV+HS PN S FW+HEWEKHGTCAAQ+DALNSQ+KYFG++L+LY+EL LNS
Sbjct: 91 PEMRAYWPDVIHSFPNRS-RFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNS 149
Query: 659 TLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCLTR-DLQ 835
L KLGIKPSI+YYQ++D K AL VYGV+PK+QCLPP E+VQT+GQIELCLT+ D Q
Sbjct: 150 VLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQTIGQIELCLTKQDQQ 209
Query: 836 LQDCPEPGEPAPQRQEA--GPGGTPILGLEICEDGPVFYPPPKETNH 970
LQ+C EPGE +QE G GL +CEDGPVFYPPPK+T H
Sbjct: 210 LQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFYPPPKKTKH 256
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,402,722
Number of extensions: 2044318
Number of successful extensions: 10039
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9970
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 381
Effective length of database: 14,770,016
Effective search space: 5627376096
Effective search space used: 5627376096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012877
(1464 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1322 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1322 bits (667), Expect = 0.0
Identities = 682/687 (99%)
Strand = Plus / Plus
Query: 778 gggcgagaaggtgcagaccctcgggcagatagagctgtgcctgaccagggacctgcagct 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306612 gggcgagaaggtgcagaccctcgggcagatagagctgtgcctgaccagggacctgcagct 3306671
Query: 838 gcaagactgtccagaacccggggagccggcgccccagaggcaggaagcagggccaggagg 897
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3306672 gcaagactgtccagaacccggggagccggcgccccagaggcgggaagcagggccaggagg 3306731
Query: 898 gaccccgatcctggggctggagatctgtgaggacggcccggtcttttacccgccccccaa 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306732 gaccccgatcctggggctggagatctgtgaggacggcccggtcttttacccgccccccaa 3306791
Query: 958 agagaccaatcactgaaagagtctgcattttgaaaatcaagagatgatgggaaatcaccg 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306792 agagaccaatcactgaaagagtctgcattttgaaaatcaagagatgatgggaaatcaccg 3306851
Query: 1018 ctttttacaaagcagctcacaagtgaaatctgttaacggccttcgctacctaagcctgct 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306852 ctttttacaaagcagctcacaagtgaaatctgttaacggccttcgctacctaagcctgct 3306911
Query: 1078 ctcttgggttcttttctgccttgattgttgtggtgcaggtacaaatggcgcgaacactgg 1137
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3306912 ctgttgggttcttttctgccttgattgtcgtggtgcaggtacaaatggcgcgaacactgg 3306971
Query: 1138 ctacgctgaaagggaggagagccccccacctgatggctgctttgtgcttggaatcaagct 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306972 ctacgctgaaagggaggagagccccccacctgatggctgctttgtgcttggaatcaagct 3307031
Query: 1198 tctggttttcttttttcctcctctctcgctccctggaagacaagcaggcacccttggcct 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307032 tctggttttcttttttcctcctctctcgctccctggaagacaagcaggcacccttggcct 3307091
Query: 1258 ttgggccagtggtccaggtccagacgaactcccctgtatccctcggccagctgccttctt 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307092 ttgggccagtggtccaggtccagacgaactcccctgtatccctcggccagctgccttctt 3307151
Query: 1318 gctctgagtacatgtcggggggatgttgggactgacgcccaagcaggagtcaggcgactt 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307152 gctctgagtacatgtcggggggatgttgggactgacgcccaagcaggagtcaggcgactt 3307211
Query: 1378 ggagtggggctgtcagctcctgttccactttcacccgccagcaccgccgtgcctggccat 1437
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3307212 ggagtggggctgacagctcctgttccactttcacccgccagcaccgccgtgcctgggcat 3307271
Query: 1438 gggtgtaccctctgagggccctggtgc 1464
|||||||||||||||||||||||||||
Sbjct: 3307272 gggtgtaccctctgagggccctggtgc 3307298
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 129 gggaaacgcggggcctggctctggacacggcctcgcgccctcggaaagccgagcctttgt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3290083 gggaaacgcggggcctggctctggacacggcctcgcgccctcggaaagccgagcctttgt 3290142
Query: 189 gcccctccggggtcttccctgccttcggcgcgatgcggctcccggccggcctcggcgtcc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3290143 gcccctccggggtcttccctgccttcggcgcgatgcggctcccggccggcctcggcgtcc 3290202
Query: 249 tctgcctggcgctctgctgcctgggcggcgcgcgcgagctctggag 294
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3290203 tctgcctggcgctctgctgcctgggcggcgcgcgcgagctctggag 3290248
Score = 258 bits (130), Expect = 8e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 gtgccccgggccgggggcgtggcgtcgggcgcccttcgcggaaacacacccggctcaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3289724 gtgccccgggccgggggcgtggcgtcgggcgcccttcgcggaaacacacccggctcaggg 3289783
Query: 61 gaccgcgggggtcgccgtcggggtagctgcggggcgcagggccggactcgtgtgcgcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3289784 gaccgcgggggtcgccgtcggggtagctgcggggcgcagggccggactcgtgtgcgcctg 3289843
Query: 121 gcgagcccgg 130
||||||||||
Sbjct: 3289844 gcgagcccgg 3289853
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 543 ggaggcacgagtgggagaagcacggcacctgcgctgcccagctggatgccctcaattccc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3302093 ggaggcacgagtgggagaagcacggcacctgcgctgcccagctggatgccctcaattccc 3302152
Query: 603 aaaggaaatactttggcaaaactctggatctgtataaggagcttgctctgaacag 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3302153 aaaggaaatactttggcaaaactctggatctgtataaggagcttgctctgaacag 3302207
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 701 cagatttcagatattaagcatgccctggtcggtgtgtacggagtggtgcccaaagtccag 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3305852 cagatttcagatattaagcatgccctggtcggtgtgtacggagtggtgcccaaagtccag 3305911
Query: 761 tgtcttccacccaaatcgg 779
|||||||||||||||||||
Sbjct: 3305912 tgtcttccacccaaatcgg 3305930
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 468 agggccttttgccggacatgaggctctactggcccgacgtgctccactcatctcccaacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3298772 agggccttttgccggacatgaggctctactggcccgacgtgctccactcatctcccaacc 3298831
Query: 528 acagcgtccacttctgg 544
|||||||||||||||||
Sbjct: 3298832 acagcgtccacttctgg 3298848
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 468 agggccttttgccggacatgaggctctactggcccgacgtgctccactcatctcccaacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433121 agggccttttgccggacatgaggctctactggcccgacgtgctccactcatctcccaacc 3433180
Query: 528 acagcgtccacttctgg 544
|||||||||||||||||
Sbjct: 3433181 acagcgtccacttctgg 3433197
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 293 agtggcgaccacgagtggaaaaaactaattatggttcaccactggcctatgacggtgtgc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3292479 agtggcgaccacgagtggaaaaaactaattatggttcaccactggcctatgacggtgtgc 3292538
Query: 353 aatg 356
||||
Sbjct: 3292539 aatg 3292542
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 411 ggcctgataaaagtggagagtgtaaccgatcctggccctttaaccccgacgagatcaagg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3296100 ggcctgataaaagtggagagtgtaaccgatcctggccctttaaccccgacgagatcaagg 3296159
Score = 115 bits (58), Expect = 7e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 356 gaagttgcaaacaactgtgaacaccctccggattactggacgatacacggactatggc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3294736 gaagttgcaaacaactgtgaacaccctccggattactggacgatacacggactatggc 3294793
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 656 agcacgctccaaaagctggggataaaaccatccatcagttactaccag 703
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304018 agcacgctccaaaagctggggataaaaccatccatcagttactaccag 3304065
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,664,876
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 11
Length of query: 1464
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1443
Effective length of database: 2,808,413,156
Effective search space: 4052540184108
Effective search space used: 4052540184108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)