Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012881
(1284 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,987,953
Number of extensions: 1455098
Number of successful extensions: 7860
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 7809
Number of HSP's successfully gapped: 0
Length of query: 428
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 322
Effective length of database: 15,340,888
Effective search space: 4939765936
Effective search space used: 4939765936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012881
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012881
(1284 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002700476.1| PREDICTED: hypothetical protein [Bos taurus]. 59 1e-08
Alignment gi|XP_611572.5| PREDICTED: hypothetical protein, partial [Bos t... 57 5e-08
>ref|XP_002700476.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 689
Score = 58.5 bits (140), Expect = 1e-08
Identities = 42/119 (35%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Frame = +2
Query: 329 MASWRGLFGLTFLCLLMRGRGQ-GDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXX 505
M +WRGL LT LC+L+ RG+ GDFDLADALDDP+PT
Sbjct: 174 MEAWRGLSCLTLLCVLLHVRGENGDFDLADALDDPKPTKKPSSGIYPNPRPPYQPQPGNP 233
Query: 506 XNSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGGFLSDRDLNDG 682
N GDI NSGGFLSD DL DG
Sbjct: 234 NNGGDIYPRTKPPPPRPQP-------------------------GNSGGFLSDSDLIDG 267
>ref|XP_611572.5| PREDICTED: hypothetical protein, partial [Bos taurus].
Length = 445
Score = 56.6 bits (135), Expect = 5e-08
Identities = 41/119 (34%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Frame = +2
Query: 329 MASWRGLFGLTFLCLLMRGRGQ-GDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXX 505
M +WRGL LT LC+L+ RG+ GDFDLADALDDP+PT
Sbjct: 253 MEAWRGLSCLTLLCVLLHVRGENGDFDLADALDDPKPTKKPSSGIYPNPRPPYQPQPGNP 312
Query: 506 XNSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGGFLSDRDLNDG 682
N G+I NSGGFLSD DL DG
Sbjct: 313 NNGGNIYPRTKPPPPRPQP-------------------------GNSGGFLSDSDLIDG 346
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,872,165
Number of extensions: 1420705
Number of successful extensions: 7467
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7425
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 323
Effective length of database: 14,207,134
Effective search space: 4588904282
Effective search space used: 4588904282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012881
(1284 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,163,244
Number of extensions: 941330
Number of successful extensions: 4896
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4858
Number of HSP's successfully gapped: 0
Length of query: 428
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 326
Effective length of database: 8,804,438
Effective search space: 2870246788
Effective search space used: 2870246788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012881
(1284 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,785,135
Number of extensions: 1145907
Number of successful extensions: 5456
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5414
Number of HSP's successfully gapped: 0
Length of query: 428
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 324
Effective length of database: 12,493,815
Effective search space: 4047996060
Effective search space used: 4047996060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012881
(1284 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001135391.1| glycoprotein Xg isoform 2 precursor [Homo sa... 99 1e-20
Alignment gi|NP_780778.1| glycoprotein Xg isoform 1 precursor [Homo sapie... 92 8e-19
Alignment gi|NP_001135392.1| glycoprotein Xg isoform 3 precursor [Homo sa... 88 2e-17
>ref|NP_001135391.1| glycoprotein Xg isoform 2 precursor [Homo sapiens].
Length = 195
Score = 98.6 bits (244), Expect = 1e-20
Identities = 68/218 (31%), Positives = 80/218 (36%)
Frame = +2
Query: 329 MASWRGLFGLTFLCLLMRGRGQGDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXXX 508
M SW GL L FLC LM RGQ DFDLADALDDPEPT
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKP-------------------- 40
Query: 509 NSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGGFLSDRDLNDGRY 688
+ DI ++Y G+ NSGG+ +D D +DGRY
Sbjct: 41 -NSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQP--GNSGNSGGYFNDVDRDDGRY 97
Query: 689 XXXXXXXAGXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXNYGGGDYSTYGNPQGNTXXX 868
Y YGG +STYGNP+GN
Sbjct: 98 PPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAK 157
Query: 869 XXXXXXXXXXXXXXXXXXXYFQYNRRRNCFRTNEPQNV 982
YF+ N RRNCFRT+EP+NV
Sbjct: 158 IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 195
>ref|NP_780778.1| glycoprotein Xg isoform 1 precursor [Homo sapiens].
Length = 180
Score = 92.4 bits (228), Expect = 8e-19
Identities = 67/218 (30%), Positives = 80/218 (36%)
Frame = +2
Query: 329 MASWRGLFGLTFLCLLMRGRGQGDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXXX 508
M SW GL L FLC LM RGQ DFDLADALDDPEPT
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKP-------------------- 40
Query: 509 NSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGGFLSDRDLNDGRY 688
+ DI ++Y G+ NSGG+ +D D +DGRY
Sbjct: 41 -NSDIYPKPKPPYYPQPENPDSGGNIY--PRPKPRPQPQPGNSGNSGGYFNDVDRDDGRY 97
Query: 689 XXXXXXXAGXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXNYGGGDYSTYGNPQGNTXXX 868
Y +GG +STYGNP+GN
Sbjct: 98 PPRPRPRPPAGGGGGGY---------------SSYGNSDNTHGGDHHSTYGNPEGNMVAK 142
Query: 869 XXXXXXXXXXXXXXXXXXXYFQYNRRRNCFRTNEPQNV 982
YF+ N RRNCFRT+EP+NV
Sbjct: 143 IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 180
>ref|NP_001135392.1| glycoprotein Xg isoform 3 precursor [Homo sapiens].
Length = 181
Score = 87.8 bits (216), Expect = 2e-17
Identities = 67/219 (30%), Positives = 80/219 (36%), Gaps = 1/219 (0%)
Frame = +2
Query: 329 MASWRGLFGLTFLCLLMRGRGQGDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXXX 508
M SW GL L FLC LM RGQ DFDLADALDDPEPT
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKP-------------------- 40
Query: 509 NSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGG-FLSDRDLNDGR 685
+ DI ++Y G+ NSGG + +D D +DGR
Sbjct: 41 -NSDIYPKPKPPYYPQPENPDSGGNIY--PRPKPRPQPQPGNSGNSGGSYFNDVDRDDGR 97
Query: 686 YXXXXXXXAGXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXNYGGGDYSTYGNPQGNTXX 865
Y Y +GG +STYGNP+GN
Sbjct: 98 YPPRPRPRPPAGGGGGGY---------------SSYGNSDNTHGGDHHSTYGNPEGNMVA 142
Query: 866 XXXXXXXXXXXXXXXXXXXXYFQYNRRRNCFRTNEPQNV 982
YF+ N RRNCFRT+EP+NV
Sbjct: 143 KIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 181
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,639,971
Number of extensions: 1401647
Number of successful extensions: 7089
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7048
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 323
Effective length of database: 14,835,944
Effective search space: 4792009912
Effective search space used: 4792009912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012881
(1284 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896481.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 337 9e-90
gb|GL896159.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 228 6e-57
gb|GL895194.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 3e-25
gb|GL895990.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 121 1e-24
gb|GL896506.1| Sus scrofa unplaced genomic scaffold chrU_scaffold84 80 3e-12
>gb|GL896481.1| Sus scrofa unplaced genomic scaffold chrU_scaffold817
Length = 3288
Score = 337 bits (170), Expect = 9e-90
Identities = 208/217 (95%), Gaps = 4/217 (1%)
Strand = Plus / Plus
Query: 1071 gacagtccctttcattcttggctta--ctgtggccctggaggggtttctcttcaacatgc 1128
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 1370 gacagtccctttcattcttggcttaacctgtggccctggaggggtttctcttcaacgtgc 1429
Query: 1129 tgcctgtcaaccaattcctgactcctcggacacgttgcctggagtaaggtagacagccag 1188
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1430 tgcctgtcaaccaattcctgactcctcggacacgtcgcctggagtaaggtagacagccgg 1489
Query: 1189 accttggcttgtaaaaagattgcttggatgca-tggcctcatcgtgaatcctggacagaa 1247
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 1490 accttggcttgtaaaaagattgctt-gatgcattggcctcatcgtgaatcctggacagag 1548
Query: 1248 agaatctgactctggttggaactgcaaagctgccccc 1284
||| |||||||||||||||||||||||||||||||||
Sbjct: 1549 agagtctgactctggttggaactgcaaagctgccccc 1585
Score = 119 bits (60), Expect = 4e-24
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 968 gagccacagaacgtctgaggtcttcgcaattccctggatcacgctgaggaaagctccaga 1027
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 1202 gagccacagaacgtctgaggtcttcgcaactccctggatcaccctgaggaaagctccaga 1261
Query: 1028 cagacagg 1035
||||||||
Sbjct: 1262 cagacagg 1269
>gb|GL896159.1| Sus scrofa unplaced genomic scaffold chrU_scaffold527
Length = 5030
Score = 228 bits (115), Expect = 6e-57
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 850 aggcaacacgatagcgaaaatcgtttctcccatagtgtccgtggtggtggtgacgctggt 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggcaacacgatagcgaaaatcgtttctcccatagtgtccgtggtggtggtgacgctggt 462
Query: 910 gggggcggcagccagctatttccagtataaccggaggaggaactgtttccggacaaatg 968
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gggggcggcggccagctatttccagtataaccggaggaggaactgtttccggacaaatg 403
Score = 75.8 bits (38), Expect = 5e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 815 ggtgggggcgactactccacgtacgggaacccacaagg 852
||||||||||||||||||||||||||||||||||||||
Sbjct: 2866 ggtgggggcgactactccacgtacgggaacccacaagg 2829
Score = 65.9 bits (33), Expect = 5e-08
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 773 ggaggagggcggtacagacccggctcccatgggagtaattacggt 817
|||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 4043 ggaggagggcggtacagacctggcccacatgggagtaattacggt 3999
>gb|GL895194.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3784
Length = 3973
Score = 123 bits (62), Expect = 3e-25
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 649 aggtttcctgagtgacagggacctcaatgacggccgatacccgcccaggcccaggccgcc 708
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3729 aggtttcctgaatgacagggacctcaatgacggccgatacccgcccaggcccaggccgcc 3670
Query: 709 tgcagg 714
||||||
Sbjct: 3669 tgcagg 3664
>gb|GL895990.1| Sus scrofa unplaced genomic scaffold chrU_scaffold450
Length = 1230
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 592 ctacccaaggccaaagccccctgttcacccgcagcctggctcctatgacaacagcggagg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctacccaaggccaaagccccctgttcacccgcagcctggctcctatgacaacagcggagg 272
Query: 652 t 652
|
Sbjct: 271 t 271
>gb|GL896506.1| Sus scrofa unplaced genomic scaffold chrU_scaffold84
Length = 135
Score = 79.8 bits (40), Expect = 3e-12
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 517 agacatctacccaaagccgaagccgccctatnnnnnnnggcctggacatcctggcaacgg 576
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 124 agacatctacccaaggccgaagccgccctatcccccccggcctggacatcctggcaacgg 65
Query: 577 cggag 581
|||||
Sbjct: 64 cggag 60
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,928,318
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 8
Length of query: 1284
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1263
Effective length of database: 2,808,413,156
Effective search space: 3547025816028
Effective search space used: 3547025816028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)