Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012886
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,846,424
Number of extensions: 977081
Number of successful extensions: 3772
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3768
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012886
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002700476.1| PREDICTED: hypothetical protein [Bos taurus]. 56 5e-08
Alignment gi|XP_611572.5| PREDICTED: hypothetical protein, partial [Bos t... 55 1e-07
>ref|XP_002700476.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 689
Score = 56.2 bits (134), Expect = 5e-08
Identities = 41/118 (34%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = +2
Query: 98 MASWRGLFGLTFLCLLMRGRGQ-GDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXX 274
M +WRGL LT LC+L+ RG+ GDFDLADALDDP+PT
Sbjct: 174 MEAWRGLSCLTLLCVLLHVRGENGDFDLADALDDPKPTKKPSSGIYPNPRPPYQPQPGNP 233
Query: 275 XNSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGGFLSDRDLND 448
N GDI NSGGFLSD DL D
Sbjct: 234 NNGGDIYPRTKPPPPRPQP-------------------------GNSGGFLSDSDLID 266
>ref|XP_611572.5| PREDICTED: hypothetical protein, partial [Bos taurus].
Length = 445
Score = 55.1 bits (131), Expect = 1e-07
Identities = 26/38 (68%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 MASWRGLFGLTFLCLLMRGRGQ-GDFDLADALDDPEPT 208
M +WRGL LT LC+L+ RG+ GDFDLADALDDP+PT
Sbjct: 253 MEAWRGLSCLTLLCVLLHVRGENGDFDLADALDDPKPT 290
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,206,973
Number of extensions: 947974
Number of successful extensions: 3766
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3762
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012886
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,442,490
Number of extensions: 615582
Number of successful extensions: 2376
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2369
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012886
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,012,579
Number of extensions: 785546
Number of successful extensions: 2823
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2814
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012886
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001135391.1| glycoprotein Xg isoform 2 precursor [Homo sa... 88 2e-17
Alignment gi|NP_001135392.1| glycoprotein Xg isoform 3 precursor [Homo sa... 59 8e-09
Alignment gi|NP_780778.1| glycoprotein Xg isoform 1 precursor [Homo sapie... 59 8e-09
>ref|NP_001135391.1| glycoprotein Xg isoform 2 precursor [Homo sapiens].
Length = 195
Score = 87.8 bits (216), Expect = 2e-17
Identities = 64/218 (29%), Positives = 76/218 (34%)
Frame = +2
Query: 98 MASWRGLFGLTFLCLLMRGRGQGDFDLADALDDPEPTXXXXXXXXXXXXXXXXXXXXXXX 277
M SW GL L FLC LM RGQ DFDLADALDDPEPT
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKP-------------------- 40
Query: 278 NSGDIXXXXXXXXXXXXXXXXXXXDVYXXXXXXXXXXXXXGSYDNSGGFLSDRDLNDXXX 457
+ DI ++Y G+ NSGG+ +D D +D
Sbjct: 41 -NSDIYPKPKPPYYPQPENPDSGGNIY--PRPKPRPQPQPGNSGNSGGYFNDVDRDDGRY 97
Query: 458 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGGGDYSTYGNPQGNTXXX 637
YGG +STYGNP+GN
Sbjct: 98 PPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAK 157
Query: 638 XXXXXXXXXXXXXXXXXXXYFQYNRRRNCFRTNEPQNV 751
YF+ N RRNCFRT+EP+NV
Sbjct: 158 IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 195
>ref|NP_001135392.1| glycoprotein Xg isoform 3 precursor [Homo sapiens].
Length = 181
Score = 58.9 bits (141), Expect = 8e-09
Identities = 28/37 (75%), Positives = 28/37 (75%)
Frame = +2
Query: 98 MASWRGLFGLTFLCLLMRGRGQGDFDLADALDDPEPT 208
M SW GL L FLC LM RGQ DFDLADALDDPEPT
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPT 37
Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/57 (42%), Positives = 30/57 (52%)
Frame = +2
Query: 581 YGGGDYSTYGNPQGNTXXXXXXXXXXXXXXXXXXXXXXYFQYNRRRNCFRTNEPQNV 751
+GG +STYGNP+GN YF+ N RRNCFRT+EP+NV
Sbjct: 125 HGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 181
>ref|NP_780778.1| glycoprotein Xg isoform 1 precursor [Homo sapiens].
Length = 180
Score = 58.9 bits (141), Expect = 8e-09
Identities = 28/37 (75%), Positives = 28/37 (75%)
Frame = +2
Query: 98 MASWRGLFGLTFLCLLMRGRGQGDFDLADALDDPEPT 208
M SW GL L FLC LM RGQ DFDLADALDDPEPT
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPT 37
Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/57 (42%), Positives = 30/57 (52%)
Frame = +2
Query: 581 YGGGDYSTYGNPQGNTXXXXXXXXXXXXXXXXXXXXXXYFQYNRRRNCFRTNEPQNV 751
+GG +STYGNP+GN YF+ N RRNCFRT+EP+NV
Sbjct: 124 HGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV 180
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,895,827
Number of extensions: 952349
Number of successful extensions: 3439
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3429
Number of HSP's successfully gapped: 6
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012886
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896481.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 391 e-106
gb|GL896159.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 228 5e-57
gb|GL895990.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 121 8e-25
gb|GL895194.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 115 5e-23
gb|GL896506.1| Sus scrofa unplaced genomic scaffold chrU_scaffold84 88 1e-14
>gb|GL896481.1| Sus scrofa unplaced genomic scaffold chrU_scaffold817
Length = 3288
Score = 391 bits (197), Expect = e-106
Identities = 218/225 (96%)
Strand = Plus / Plus
Query: 840 gacagtccctttcattcttggcttaacctgtggccctggaggggtttctctttcacgtgc 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1370 gacagtccctttcattcttggcttaacctgtggccctggaggggtttctcttcaacgtgc 1429
Query: 900 tgcctgtcaaccaattcctgactcctcggacacgttgcctggagtaaggtagacagccag 959
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1430 tgcctgtcaaccaattcctgactcctcggacacgtcgcctggagtaaggtagacagccgg 1489
Query: 960 accttggcttgtaaaaagattgcttgatgcattggcctcatcgtgaatcctggacagaga 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 accttggcttgtaaaaagattgcttgatgcattggcctcatcgtgaatcctggacagaga 1549
Query: 1020 gagtctgactctgggtgggactgcaaagctggcccctgggacaac 1064
|||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct: 1550 gagtctgactctggttggaactgcaaagctgccccctgggacaac 1594
Score = 119 bits (60), Expect = 3e-24
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 737 gagccacagaacgtctgaggtcttcgcaattccctggatcacgctgaggaaagctccaga 796
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 1202 gagccacagaacgtctgaggtcttcgcaactccctggatcaccctgaggaaagctccaga 1261
Query: 797 cagacagg 804
||||||||
Sbjct: 1262 cagacagg 1269
>gb|GL896159.1| Sus scrofa unplaced genomic scaffold chrU_scaffold527
Length = 5030
Score = 228 bits (115), Expect = 5e-57
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 619 aggcaacacgatagcgaaaatcgtttctcccatagtgtccgtggtggtggtgacgctggt 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggcaacacgatagcgaaaatcgtttctcccatagtgtccgtggtggtggtgacgctggt 462
Query: 679 gggggcggcagccagctatttccagtataaccggaggaggaactgtttccggacaaatg 737
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gggggcggcggccagctatttccagtataaccggaggaggaactgtttccggacaaatg 403
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 584 ggtgggggcgactactccacgtacgggaacccacaagg 621
||||||||||||||||||||||||||||||||||||||
Sbjct: 2866 ggtgggggcgactactccacgtacgggaacccacaagg 2829
Score = 65.9 bits (33), Expect = 4e-08
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 542 ggaggagggcggtacagacccggctcccatgggagtaattacggt 586
|||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 4043 ggaggagggcggtacagacctggcccacatgggagtaattacggt 3999
>gb|GL895990.1| Sus scrofa unplaced genomic scaffold chrU_scaffold450
Length = 1230
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 361 ctacccaaggccaaagccccctgttcacccgcagcctggctcctatgacaacagcggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctacccaaggccaaagccccctgttcacccgcagcctggctcctatgacaacagcggagg 272
Query: 421 t 421
|
Sbjct: 271 t 271
>gb|GL895194.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3784
Length = 3973
Score = 115 bits (58), Expect = 5e-23
Identities = 64/66 (96%)
Strand = Plus / Minus
Query: 418 aggtttcctgagtgacagggacctcaatgacggccgatacccgcccaggcccaggccacc 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3729 aggtttcctgaatgacagggacctcaatgacggccgatacccgcccaggcccaggccgcc 3670
Query: 478 tgcagg 483
||||||
Sbjct: 3669 tgcagg 3664
>gb|GL896506.1| Sus scrofa unplaced genomic scaffold chrU_scaffold84
Length = 135
Score = 87.7 bits (44), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 286 agacatctacccaaggccgaagccgccctatnnnnnnnggcctggacatcctggcaacgg 345
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 124 agacatctacccaaggccgaagccgccctatcccccccggcctggacatcctggcaacgg 65
Query: 346 cggag 350
|||||
Sbjct: 64 cggag 60
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,562,216
Number of extensions: 640
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 8
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)