Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012888
(1133 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069946.1| proteasome inhibitor PI31 subunit [Bos tauru... 546 e-155
>ref|NP_001069946.1| proteasome inhibitor PI31 subunit [Bos taurus].
Length = 270
Score = 546 bits (1406), Expect = e-155
Identities = 258/270 (95%), Positives = 262/270 (97%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFASAAP ITCAQDALVCFLHWEVVTHGYYGLGAGDQPGP+DKKSELLP EWNS
Sbjct: 1 MAGLEVLFASAAPAITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPNDKKSELLPVEWNS 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLE GSQQVSDLTLNLNDYIDSEHLVDF
Sbjct: 61 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLEHGSQQVSDLTLNLNDYIDSEHLVDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASVSPHREFPPATAREVDPLRIHPHHPHTSRQ 713
HR YKNSEELRSRIVSGIITPIHE W+KA++SPHREFPPATAREVDPLRIHP HPHTSRQ
Sbjct: 121 HRVYKNSEELRSRIVSGIITPIHEQWEKANLSPHREFPPATAREVDPLRIHPQHPHTSRQ 180
Query: 714 PPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPGA 893
P W DPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPGA
Sbjct: 181 PTWCDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPGA 240
Query: 894 RFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
RFDPFGPIGTSPSGPNPDHLPPPGYDDMYL
Sbjct: 241 RFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 270
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,366,207
Number of extensions: 1551100
Number of successful extensions: 7118
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6905
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012888
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012888
(1133 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861761.1| PREDICTED: similar to Proteasome inhibitor PI31... 533 e-152
Alignment gi|XP_534374.2| PREDICTED: similar to Proteasome inhibitor PI31... 533 e-152
>ref|XP_861761.1| PREDICTED: similar to Proteasome inhibitor PI31 subunit (hPI31)
isoform 3 [Canis familiaris].
Length = 271
Score = 533 bits (1374), Expect = e-152
Identities = 255/271 (94%), Positives = 258/271 (95%), Gaps = 1/271 (0%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFAS AP IT AQDALVCFLHWEVVTHGYY +G GDQPGP+DKKSELLPAEWNS
Sbjct: 1 MAGLEVLFASVAPAITSAQDALVCFLHWEVVTHGYYSVGTGDQPGPNDKKSELLPAEWNS 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLE GSQQVSDLTLNL+DYIDSEHL DF
Sbjct: 61 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLEFGSQQVSDLTLNLDDYIDSEHLGDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASVSP-HREFPPATAREVDPLRIHPHHPHTSR 710
HR YKNSEELRSRI SGIITPIHEHWDKASVS HREFPPATAREVDPLRIHP HPHTSR
Sbjct: 121 HRTYKNSEELRSRIASGIITPIHEHWDKASVSSLHREFPPATAREVDPLRIHPQHPHTSR 180
Query: 711 QPPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 890
QPPW DPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
Sbjct: 181 QPPWCDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 240
Query: 891 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL
Sbjct: 241 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 271
>ref|XP_534374.2| PREDICTED: similar to Proteasome inhibitor PI31 subunit (hPI31)
isoform 2 [Canis familiaris].
Length = 271
Score = 533 bits (1374), Expect = e-152
Identities = 255/271 (94%), Positives = 258/271 (95%), Gaps = 1/271 (0%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFAS AP IT AQDALVCFLHWEVVTHGYY +G GDQPGP+DKKSELLPAEWNS
Sbjct: 1 MAGLEVLFASVAPAITSAQDALVCFLHWEVVTHGYYSVGTGDQPGPNDKKSELLPAEWNS 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLE GSQQVSDLTLNL+DYIDSEHL DF
Sbjct: 61 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLEFGSQQVSDLTLNLDDYIDSEHLGDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASVSP-HREFPPATAREVDPLRIHPHHPHTSR 710
HR YKNSEELRSRI SGIITPIHEHWDKASVS HREFPPATAREVDPLRIHP HPHTSR
Sbjct: 121 HRTYKNSEELRSRIASGIITPIHEHWDKASVSSLHREFPPATAREVDPLRIHPQHPHTSR 180
Query: 711 QPPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 890
QPPW DPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
Sbjct: 181 QPPWCDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 240
Query: 891 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL
Sbjct: 241 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,496,716
Number of extensions: 1605820
Number of successful extensions: 7219
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6979
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012888
(1133 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230269.1| proteasome inhibitor PI31 subunit [Sus scrof... 572 e-163
>ref|NP_001230269.1| proteasome inhibitor PI31 subunit [Sus scrofa].
Length = 270
Score = 572 bits (1473), Expect = e-163
Identities = 270/270 (100%), Positives = 270/270 (100%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS
Sbjct: 1 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF
Sbjct: 61 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASVSPHREFPPATAREVDPLRIHPHHPHTSRQ 713
HRAYKNSEELRSRIVSGIITPIHEHWDKASVSPHREFPPATAREVDPLRIHPHHPHTSRQ
Sbjct: 121 HRAYKNSEELRSRIVSGIITPIHEHWDKASVSPHREFPPATAREVDPLRIHPHHPHTSRQ 180
Query: 714 PPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPGA 893
PPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPGA
Sbjct: 181 PPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPGA 240
Query: 894 RFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
RFDPFGPIGTSPSGPNPDHLPPPGYDDMYL
Sbjct: 241 RFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,266,762
Number of extensions: 1007890
Number of successful extensions: 4850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4567
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012888
(1133 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997611.1| proteasome inhibitor PI31 subunit [Mus musculus]. 489 e-138
>ref|NP_997611.1| proteasome inhibitor PI31 subunit [Mus musculus].
Length = 271
Score = 489 bits (1258), Expect = e-138
Identities = 231/271 (85%), Positives = 249/271 (91%), Gaps = 1/271 (0%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFASAAP+++C QDALVCFLHWEVVT+GYY LG GDQPGPSDKKSELLPA+WNS
Sbjct: 1 MAGLEVLFASAAPSMSCPQDALVCFLHWEVVTNGYYALGTGDQPGPSDKKSELLPAKWNS 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NK+LY LRYESKDG+RKLL+KAV+VEN MIINVLE G+QQV+DLTLNL+DYID+E L DF
Sbjct: 61 NKELYALRYESKDGARKLLLKAVSVENGMIINVLELGTQQVADLTLNLDDYIDAEDLSDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASV-SPHREFPPATAREVDPLRIHPHHPHTSR 710
HR YKNSEELRS+I SGIITPIHE W+KA SP REFPPATAREVDPL+I H PHTSR
Sbjct: 121 HRTYKNSEELRSQIRSGIITPIHEQWEKARANSPPREFPPATAREVDPLQISSHRPHTSR 180
Query: 711 QPPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 890
QP W DPL PFAVGG+DLDPFGC+RGGMIVDPLRSGFPR LIDPSSGLPNRLPPGAVPPG
Sbjct: 181 QPAWRDPLSPFAVGGDDLDPFGCQRGGMIVDPLRSGFPRVLIDPSSGLPNRLPPGAVPPG 240
Query: 891 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL
Sbjct: 241 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,477,843
Number of extensions: 1279766
Number of successful extensions: 5491
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5318
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012888
(1133 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848693.2| proteasome inhibitor PI31 subunit [Homo sapiens]. 517 e-147
Alignment gi|NP_006805.2| proteasome inhibitor PI31 subunit [Homo sapiens]. 517 e-147
>ref|NP_848693.2| proteasome inhibitor PI31 subunit [Homo sapiens].
Length = 271
Score = 517 bits (1332), Expect = e-147
Identities = 245/271 (90%), Positives = 256/271 (94%), Gaps = 1/271 (0%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFASAAP ITC QDALVCFLHWEVVTHGY+GLG GDQPGP+DKKSELLPA WN+
Sbjct: 1 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNN 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NKDLYVLRYE KDGSRKLLVKA+TVE+SMI+NVLE GSQQV+DLTLNL+DYID+EHL DF
Sbjct: 61 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASV-SPHREFPPATAREVDPLRIHPHHPHTSR 710
HR YKNSEELRSRIVSGIITPIHE W+KA+V SPHREFPPATAREVDPLRI PHHPHTSR
Sbjct: 121 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR 180
Query: 711 QPPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 890
QPPW DPLGPF VGGEDLDPFG RRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
Sbjct: 181 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 240
Query: 891 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
ARFDPFGPIGTSP GPNPDHLPPPGYDDMYL
Sbjct: 241 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL 271
>ref|NP_006805.2| proteasome inhibitor PI31 subunit [Homo sapiens].
Length = 271
Score = 517 bits (1332), Expect = e-147
Identities = 245/271 (90%), Positives = 256/271 (94%), Gaps = 1/271 (0%)
Frame = +3
Query: 174 MAGLEVLFASAAPTITCAQDALVCFLHWEVVTHGYYGLGAGDQPGPSDKKSELLPAEWNS 353
MAGLEVLFASAAP ITC QDALVCFLHWEVVTHGY+GLG GDQPGP+DKKSELLPA WN+
Sbjct: 1 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNN 60
Query: 354 NKDLYVLRYESKDGSRKLLVKAVTVENSMIINVLECGSQQVSDLTLNLNDYIDSEHLVDF 533
NKDLYVLRYE KDGSRKLLVKA+TVE+SMI+NVLE GSQQV+DLTLNL+DYID+EHL DF
Sbjct: 61 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF 120
Query: 534 HRAYKNSEELRSRIVSGIITPIHEHWDKASV-SPHREFPPATAREVDPLRIHPHHPHTSR 710
HR YKNSEELRSRIVSGIITPIHE W+KA+V SPHREFPPATAREVDPLRI PHHPHTSR
Sbjct: 121 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR 180
Query: 711 QPPWSDPLGPFAVGGEDLDPFGCRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 890
QPPW DPLGPF VGGEDLDPFG RRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
Sbjct: 181 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 240
Query: 891 ARFDPFGPIGTSPSGPNPDHLPPPGYDDMYL 983
ARFDPFGPIGTSP GPNPDHLPPPGYDDMYL
Sbjct: 241 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,372,514
Number of extensions: 1556362
Number of successful extensions: 6832
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6639
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012888
(1133 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 577 e-162
>Sscrofa_Chr17
|| Length = 69701581
Score = 577 bits (291), Expect = e-162
Identities = 291/291 (100%)
Strand = Plus / Minus
Query: 12 ccacgcccccagcactggggcgtctccattttggccgcgcaggttagggacgtgactcag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38711378 ccacgcccccagcactggggcgtctccattttggccgcgcaggttagggacgtgactcag 38711319
Query: 72 accagcggatcggcgaagcggtgttctcggtactctgagggccgagccggctcaccgcac 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38711318 accagcggatcggcgaagcggtgttctcggtactctgagggccgagccggctcaccgcac 38711259
Query: 132 tctctcccttccttattctgcctgcagaggccgggggcgcgcatggcgggcttggaggtc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38711258 tctctcccttccttattctgcctgcagaggccgggggcgcgcatggcgggcttggaggtc 38711199
Query: 192 ctgttcgcgtctgcggcgccgaccatcacctgcgcgcaggacgccctcgtctgcttccta 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38711198 ctgttcgcgtctgcggcgccgaccatcacctgcgcgcaggacgccctcgtctgcttccta 38711139
Query: 252 cactgggaggtggttacgcacggctactacggcttgggcgccggcgaccag 302
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38711138 cactgggaggtggttacgcacggctactacggcttgggcgccggcgaccag 38711088
Score = 577 bits (291), Expect = e-162
Identities = 291/291 (100%)
Strand = Plus / Minus
Query: 12 ccacgcccccagcactggggcgtctccattttggccgcgcaggttagggacgtgactcag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38930203 ccacgcccccagcactggggcgtctccattttggccgcgcaggttagggacgtgactcag 38930144
Query: 72 accagcggatcggcgaagcggtgttctcggtactctgagggccgagccggctcaccgcac 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38930143 accagcggatcggcgaagcggtgttctcggtactctgagggccgagccggctcaccgcac 38930084
Query: 132 tctctcccttccttattctgcctgcagaggccgggggcgcgcatggcgggcttggaggtc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38930083 tctctcccttccttattctgcctgcagaggccgggggcgcgcatggcgggcttggaggtc 38930024
Query: 192 ctgttcgcgtctgcggcgccgaccatcacctgcgcgcaggacgccctcgtctgcttccta 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38930023 ctgttcgcgtctgcggcgccgaccatcacctgcgcgcaggacgccctcgtctgcttccta 38929964
Query: 252 cactgggaggtggttacgcacggctactacggcttgggcgccggcgaccag 302
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38929963 cactgggaggtggttacgcacggctactacggcttgggcgccggcgaccag 38929913
Score = 381 bits (192), Expect = e-103
Identities = 198/200 (99%)
Strand = Plus / Minus
Query: 934 gacctaacccagaccatctccccccgccgggctacgatgacatgtacctgtgaaggcctc 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38668171 gacctaacccagaccatctccccccgccgggctacgatgacatgtacctgtgaaggcctc 38668112
Query: 994 aagaatgtaacatcccagccttccctccactctcctggagctgccactgccggccccatc 1053
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 38668111 aagaatgtaacatcccagccttccctccactctcctggagctgccactgctggccccatc 38668052
Query: 1054 agcaacccttttcttgtgggttggcggcaaggaactctgcccatgtgtttgcaggcctgc 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38668051 agcaacccttttcttgtgggttggcggcaaggaactctgcccatgtgtttgcaggcctgc 38667992
Query: 1114 tgggaatgcctccccacccc 1133
||||| ||||||||||||||
Sbjct: 38667991 tgggattgcctccccacccc 38667972
Score = 381 bits (192), Expect = e-103
Identities = 198/200 (99%)
Strand = Plus / Minus
Query: 934 gacctaacccagaccatctccccccgccgggctacgatgacatgtacctgtgaaggcctc 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38887000 gacctaacccagaccatctccccccgccgggctacgatgacatgtacctgtgaaggcctc 38886941
Query: 994 aagaatgtaacatcccagccttccctccactctcctggagctgccactgccggccccatc 1053
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 38886940 aagaatgtaacatcccagccttccctccactctcctggagctgccactgctggccccatc 38886881
Query: 1054 agcaacccttttcttgtgggttggcggcaaggaactctgcccatgtgtttgcaggcctgc 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38886880 agcaacccttttcttgtgggttggcggcaaggaactctgcccatgtgtttgcaggcctgc 38886821
Query: 1114 tgggaatgcctccccacccc 1133
||||| ||||||||||||||
Sbjct: 38886820 tgggattgcctccccacccc 38886801
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 536 cagggcctacaagaacagtgaggagcttcggtctcggatcgtgtctgggatcatcacacc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38692934 cagggcctacaagaacagtgaggagcttcggtctcggatcgtgtctgggatcatcacacc 38692875
Query: 596 tatccatgagcactgggacaaagccagtgtaagtccccaccgggagtttccccctgccac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38692874 tatccatgagcactgggacaaagccagtgtaagtccccaccgggagtttccccctgccac 38692815
Query: 656 tgccagagaggtggacccactccggattcacccccaccacccacacaccagccggcagcc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38692814 tgccagagaggtggacccactccggattcacccccaccacccacacaccagccggcagcc 38692755
Query: 716 tccctgg 722
|||||||
Sbjct: 38692754 tccctgg 38692748
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 536 cagggcctacaagaacagtgaggagcttcggtctcggatcgtgtctgggatcatcacacc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38911757 cagggcctacaagaacagtgaggagcttcggtctcggatcgtgtctgggatcatcacacc 38911698
Query: 596 tatccatgagcactgggacaaagccagtgtaagtccccaccgggagtttccccctgccac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38911697 tatccatgagcactgggacaaagccagtgtaagtccccaccgggagtttccccctgccac 38911638
Query: 656 tgccagagaggtggacccactccggattcacccccaccacccacacaccagccggcagcc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38911637 tgccagagaggtggacccactccggattcacccccaccacccacacaccagccggcagcc 38911578
Query: 716 tccctgg 722
|||||||
Sbjct: 38911577 tccctgg 38911571
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 775 ggtgtcggagaggtggcatgattgtggatcccctgagatctggctttccaagagcactta 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38668858 ggtgtcggagaggtggcatgattgtggatcccctgagatctggctttccaagagcactta 38668799
Query: 835 ttgacccatcatcaggcctcccaaaccgtcttcctccaggcgctgtgcccccaggagcac 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38668798 ttgacccatcatcaggcctcccaaaccgtcttcctccaggcgctgtgcccccaggagcac 38668739
Query: 895 gctttgatccctttggacccattgggaccagcccgtctgg 934
||||||||||||||||||||||||||||||||||||||||
Sbjct: 38668738 gctttgatccctttggacccattgggaccagcccgtctgg 38668699
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 775 ggtgtcggagaggtggcatgattgtggatcccctgagatctggctttccaagagcactta 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38887687 ggtgtcggagaggtggcatgattgtggatcccctgagatctggctttccaagagcactta 38887628
Query: 835 ttgacccatcatcaggcctcccaaaccgtcttcctccaggcgctgtgcccccaggagcac 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38887627 ttgacccatcatcaggcctcccaaaccgtcttcctccaggcgctgtgcccccaggagcac 38887568
Query: 895 gctttgatccctttggacccattgggaccagcccgtctgg 934
||||||||||||||||||||||||||||||||||||||||
Sbjct: 38887567 gctttgatccctttggacccattgggaccagcccgtctgg 38887528
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 300 cagccgggtcccagtgataagaaatcagaactgctgccagctgaatggaacagcaataaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38705294 cagccgggtcccagtgataagaaatcagaactgctgccagctgaatggaacagcaataaa 38705235
Query: 360 gatctgtacgtcctccggtatgagtctaaggatgggtccagaaagctcctagtgaaggct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38705234 gatctgtacgtcctccggtatgagtctaaggatgggtccagaaagctcctagtgaaggct 38705175
Query: 420 gtcaccgtggagaacagcatgatcatcaacgtgctgg 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 38705174 gtcaccgtggagaacagcatgatcatcaacgtgctgg 38705138
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 300 cagccgggtcccagtgataagaaatcagaactgctgccagctgaatggaacagcaataaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38924117 cagccgggtcccagtgataagaaatcagaactgctgccagctgaatggaacagcaataaa 38924058
Query: 360 gatctgtacgtcctccggtatgagtctaaggatgggtccagaaagctcctagtgaaggct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38924057 gatctgtacgtcctccggtatgagtctaaggatgggtccagaaagctcctagtgaaggct 38923998
Query: 420 gtcaccgtggagaacagcatgatcatcaacgtgctgg 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 38923997 gtcaccgtggagaacagcatgatcatcaacgtgctgg 38923961
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 455 ggaatgtggctcacagcaagtgtcagacttgaccctgaacttgaatgattatatcgattc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38703441 ggaatgtggctcacagcaagtgtcagacttgaccctgaacttgaatgattatatcgattc 38703382
Query: 515 agaacacctggttgacttccacagg 539
|||||||||||||||||||||||||
Sbjct: 38703381 agaacacctggttgacttccacagg 38703357
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 455 ggaatgtggctcacagcaagtgtcagacttgaccctgaacttgaatgattatatcgattc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38922264 ggaatgtggctcacagcaagtgtcagacttgaccctgaacttgaatgattatatcgattc 38922205
Query: 515 agaacacctggttgacttccacagg 539
|||||||||||||||||||||||||
Sbjct: 38922204 agaacacctggttgacttccacagg 38922180
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 721 ggagcgatcccctgggcccgtttgctgtcgggggagaggacctagacccctttgggtg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38669978 ggagcgatcccctgggcccgtttgctgtcgggggagaggacctagacccctttgggtg 38669921
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 721 ggagcgatcccctgggcccgtttgctgtcgggggagaggacctagacccctttgggtg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38888807 ggagcgatcccctgggcccgtttgctgtcgggggagaggacctagacccctttgggtg 38888750
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,792,862
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 14
Length of query: 1133
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1112
Effective length of database: 2,808,413,156
Effective search space: 3122955429472
Effective search space used: 3122955429472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)