Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012889
(727 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029223.1| 60S ribosomal protein L27 [Bos taurus]. 249 2e-66
Alignment gi|XP_002698448.1| PREDICTED: ribosomal protein L27-like [Bos t... 229 2e-60
Alignment gi|XP_604002.1| PREDICTED: ribosomal protein L27-like [Bos taur... 229 2e-60
>ref|NP_001029223.1| 60S ribosomal protein L27 [Bos taurus].
Length = 136
Score = 249 bits (636), Expect = 2e-66
Identities = 124/136 (91%), Positives = 124/136 (91%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>ref|XP_002698448.1| PREDICTED: ribosomal protein L27-like [Bos taurus].
Length = 136
Score = 229 bits (583), Expect = 2e-60
Identities = 114/136 (83%), Positives = 117/136 (86%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLA YS RKAVIVK+ DDGTSDRPYS LVAGIDRYPRK+TAAMG
Sbjct: 1 MGKFMKPGKVVLVLASHYSRRKAVIVKSTDDGTSDRPYSRGLVAGIDRYPRKMTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMP RYSVDIPLDKTVVNKDVFRDPALKRKARREAKVK+EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPPRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKYEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>ref|XP_604002.1| PREDICTED: ribosomal protein L27-like [Bos taurus].
Length = 136
Score = 229 bits (583), Expect = 2e-60
Identities = 114/136 (83%), Positives = 117/136 (86%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLA YS RKAVIVK+ DDGTSDRPYS LVAGIDRYPRK+TAAMG
Sbjct: 1 MGKFMKPGKVVLVLASHYSRRKAVIVKSTDDGTSDRPYSRGLVAGIDRYPRKMTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMP RYSVDIPLDKTVVNKDVFRDPALKRKARREAKVK+EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPPRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKYEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,911,614
Number of extensions: 779283
Number of successful extensions: 2076
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2070
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 143
Effective length of database: 14,405,662
Effective search space: 2060009666
Effective search space used: 2060009666
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012889
(727 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003102.1| 60S ribosomal protein L27 [Canis lupus famil... 239 1e-63
Alignment gi|XP_855737.1| PREDICTED: similar to ribosomal protein L27 iso... 185 3e-47
Alignment gi|XP_543309.2| PREDICTED: similar to ribosomal protein L27 iso... 185 3e-47
Alignment gi|XP_533770.2| PREDICTED: similar to Membrane associated guany... 104 7e-23
Alignment gi|XP_544446.2| PREDICTED: similar to orexin receptor 1 [Canis ... 79 3e-15
>ref|NP_001003102.1| 60S ribosomal protein L27 [Canis lupus familiaris].
Length = 132
Score = 239 bits (611), Expect = 1e-63
Identities = 119/132 (90%), Positives = 120/132 (90%)
Frame = +3
Query: 90 MKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXXXXXX 269
MKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAK 60
Query: 270 XXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKT 449
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE+YKT
Sbjct: 61 RSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKT 120
Query: 450 GKNKWFFQKLRF 485
GKNKWFFQKLRF
Sbjct: 121 GKNKWFFQKLRF 132
>ref|XP_855737.1| PREDICTED: similar to ribosomal protein L27 isoform 3 [Canis
familiaris].
Length = 110
Score = 185 bits (470), Expect = 3e-47
Identities = 94/110 (85%), Positives = 94/110 (85%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSG KAVIVKNIDDGTSDRPYSHALVA IDRYPRKVT AMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGGKAVIVKNIDDGTSDRPYSHALVAAIDRYPRKVTVAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKA 407
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALK KA
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKCKA 110
>ref|XP_543309.2| PREDICTED: similar to ribosomal protein L27 isoform 1 [Canis
familiaris].
Length = 110
Score = 185 bits (470), Expect = 3e-47
Identities = 94/110 (85%), Positives = 94/110 (85%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSG KAVIVKNIDDGTSDRPYSHALVA IDRYPRKVT AMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGGKAVIVKNIDDGTSDRPYSHALVAAIDRYPRKVTVAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKA 407
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALK KA
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKCKA 110
>ref|XP_533770.2| PREDICTED: similar to Membrane associated guanylate kinase, WW and
PDZ domain containing protein 1 (BAI1-associated protein
1) (BAP-1) (Membrane associated guanylate kinase
inverted-1) (MAGI-1) (Atrophin-1 interacting protein 3)
(AIP3) (WW domain-containing p... [Canis familiaris].
Length = 1593
Score = 104 bits (260), Expect = 7e-23
Identities = 51/56 (91%), Positives = 51/56 (91%)
Frame = +3
Query: 60 RVVAAEMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYP 227
RV EMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSD PYSHA VAGIDRYP
Sbjct: 1538 RVAGVEMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDHPYSHAPVAGIDRYP 1593
>ref|XP_544446.2| PREDICTED: similar to orexin receptor 1 [Canis familiaris].
Length = 502
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +3
Query: 288 FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKT 449
FVKVYNY+H M TRYS+DIPLD TV+NKDV DPA K KA +EAKVKF+ER ++
Sbjct: 15 FVKVYNYSHFMLTRYSMDIPLDTTVINKDVSGDPAPKHKAWQEAKVKFKERCRS 68
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,680,363
Number of extensions: 725111
Number of successful extensions: 2128
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2122
Number of HSP's successfully gapped: 5
Length of query: 242
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 142
Effective length of database: 15,540,904
Effective search space: 2206808368
Effective search space used: 2206808368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012889
(727 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090948.1| 60S ribosomal protein L27 [Sus scrofa]. 249 1e-66
>ref|NP_001090948.1| 60S ribosomal protein L27 [Sus scrofa].
Length = 136
Score = 249 bits (636), Expect = 1e-66
Identities = 124/136 (91%), Positives = 124/136 (91%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,464,185
Number of extensions: 625172
Number of successful extensions: 1341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1336
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,953,820
Effective search space: 1307257720
Effective search space used: 1307257720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012889
(727 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001473243.1| PREDICTED: 60S ribosomal protein L27 [Mus mu... 249 1e-66
Alignment gi|NP_035419.1| 60S ribosomal protein L27 [Mus musculus]. 249 1e-66
Alignment gi|XP_003086217.1| PREDICTED: 60S ribosomal protein L27-like [M... 244 6e-65
Alignment gi|XP_003086663.1| PREDICTED: 60S ribosomal protein L27-like [M... 243 1e-64
Alignment gi|XP_894555.1| PREDICTED: 60S ribosomal protein L27-like [Mus ... 242 2e-64
Alignment gi|XP_139514.3| PREDICTED: 60S ribosomal protein L27-like [Mus ... 209 2e-54
Alignment gi|XP_912282.2| PREDICTED: 60S ribosomal protein L27-like [Mus ... 209 2e-54
>ref|XP_001473243.1| PREDICTED: 60S ribosomal protein L27 [Mus musculus].
Length = 136
Score = 249 bits (636), Expect = 1e-66
Identities = 124/136 (91%), Positives = 124/136 (91%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>ref|NP_035419.1| 60S ribosomal protein L27 [Mus musculus].
Length = 136
Score = 249 bits (636), Expect = 1e-66
Identities = 124/136 (91%), Positives = 124/136 (91%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>ref|XP_003086217.1| PREDICTED: 60S ribosomal protein L27-like [Mus musculus].
Length = 136
Score = 244 bits (622), Expect = 6e-65
Identities = 122/136 (89%), Positives = 122/136 (89%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYS RKAVIVKNIDDGT DRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSRRKAVIVKNIDDGTLDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KITKRSKIKFFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
>ref|XP_003086663.1| PREDICTED: 60S ribosomal protein L27-like [Mus musculus].
Length = 136
Score = 243 bits (619), Expect = 1e-64
Identities = 121/136 (88%), Positives = 121/136 (88%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAG YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGHYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVV KDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVKKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYK GKNKWFFQKLRF
Sbjct: 121 RYKIGKNKWFFQKLRF 136
>ref|XP_894555.1| PREDICTED: 60S ribosomal protein L27-like [Mus musculus].
Length = 136
Score = 242 bits (617), Expect = 2e-64
Identities = 120/136 (88%), Positives = 122/136 (89%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVL+LAGRYSGRKAVIVKNI+DGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLILAGRYSGRKAVIVKNIEDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKAR EAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARWEAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYK GKNKWFFQKLRF
Sbjct: 121 RYKIGKNKWFFQKLRF 136
>ref|XP_139514.3| PREDICTED: 60S ribosomal protein L27-like [Mus musculus].
Length = 136
Score = 209 bits (531), Expect = 2e-54
Identities = 107/136 (78%), Positives = 113/136 (83%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
M KFMKPGKVVLVLAGRYSG KAVI+KNID+GTSDRPYS LVAGID YP+KVTAAMG
Sbjct: 1 MEKFMKPGKVVLVLAGRYSGHKAVIMKNIDNGTSDRPYSRVLVAGIDCYPQKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
VKVYNYNHL+PTR+SV I LDKT VNKDVFRDPALKRKAR+EAKVK EE
Sbjct: 61 KISKRSKFKSIVKVYNYNHLIPTRHSVAILLDKTAVNKDVFRDPALKRKARQEAKVKLEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNK FFQKLRF
Sbjct: 121 RYKTGKNKGFFQKLRF 136
>ref|XP_912282.2| PREDICTED: 60S ribosomal protein L27-like [Mus musculus].
Length = 136
Score = 209 bits (531), Expect = 2e-54
Identities = 107/136 (78%), Positives = 113/136 (83%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
M KFMKPGKVVLVLAGRYSG KAVI+KNID+GTSDRPYS LVAGID YP+KVTAAMG
Sbjct: 1 MEKFMKPGKVVLVLAGRYSGHKAVIMKNIDNGTSDRPYSRVLVAGIDCYPQKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
VKVYNYNHL+PTR+SV I LDKT VNKDVFRDPALKRKAR+EAKVK EE
Sbjct: 61 KISKRSKFKSIVKVYNYNHLIPTRHSVAILLDKTAVNKDVFRDPALKRKARQEAKVKLEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNK FFQKLRF
Sbjct: 121 RYKTGKNKGFFQKLRF 136
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,002,754
Number of extensions: 588607
Number of successful extensions: 1620
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1615
Number of HSP's successfully gapped: 7
Length of query: 242
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 144
Effective length of database: 12,674,031
Effective search space: 1825060464
Effective search space used: 1825060464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012889
(727 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000979.1| 60S ribosomal protein L27 [Homo sapiens]. 249 2e-66
>ref|NP_000979.1| 60S ribosomal protein L27 [Homo sapiens].
Length = 136
Score = 249 bits (636), Expect = 2e-66
Identities = 124/136 (91%), Positives = 124/136 (91%)
Frame = +3
Query: 78 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGXX 257
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMG
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 258 XXXXXXXXXXFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 437
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 438 RYKTGKNKWFFQKLRF 485
RYKTGKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,064,850
Number of extensions: 702547
Number of successful extensions: 2081
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2076
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 142
Effective length of database: 15,000,764
Effective search space: 2130108488
Effective search space used: 2130108488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012889
(727 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 716 0.0
Sscrofa_Chr01 551 e-154
Sscrofa_ChrX 446 e-123
Sscrofa_Chr12 329 1e-87
Sscrofa_Chr02 260 9e-67
Sscrofa_Chr08 167 1e-38
Sscrofa_Chr07 151 6e-34
>Sscrofa_Chr17
|| Length = 69701581
Score = 716 bits (361), Expect = 0.0
Identities = 425/445 (95%), Gaps = 1/445 (0%)
Strand = Plus / Plus
Query: 70 ctgctgaaatgggcaagttcatgaaacccgggaaggtggtgctggtcctggctggtcgct 129
|||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 64644545 ctgcagaaatgggcaagttcgtgaaacccgggaaggtggtgctggtcctggccggtcgct 64644604
Query: 130 actccggacgcaaagcggtcatcgtaaagaacattgatgatggcacctcagaccgaccct 189
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 64644605 actctggacgcaaagcagtcatcgtaaagaacactgatgatggcacctcagaccaaccct 64644664
Query: 190 acagccatgctctggtggctggaattgatcgctatccccgcaaagtgacagctgccatgg 249
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64644665 acagccatgccctggtggctggaattgatcgctatccccgcaaagtgacagctgccatgg 64644724
Query: 250 gcaagaagaaaattgccaagagatcaaagattaagtcttttgtgaaagtttataattata 309
|||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||
Sbjct: 64644725 gcaagaagaaaattgccaagagctcaaagatccagtcttttgt-aaagtttataatgata 64644783
Query: 310 atcacctcatgcccacaaggtactccgtggatatccccttggacaaaactgttgtcaata 369
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct: 64644784 atcacctcatgcccacaaggtactccgtggatatccccttgcacaaaactgtggtcaaca 64644843
Query: 370 aggatgtcttcagagaccctgcactcaaacgcaaggcccgacgagaggccaaggtcaagt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64644844 aggatgtcttcagagaccctgcactcaaacgcaaggcccgacgagaggccaaggtcaagt 64644903
Query: 430 tcgaggagagatacaagaccggcaagaacaaatggttcttccagaagctgcggttttagg 489
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 64644904 ttgaggagagatacaagactggcaagaacaaatgcttcttccagaagctccggttttagg 64644963
Query: 490 tctgtcttatttcggtcattaaaat 514
|||||||||||||||||||||||||
Sbjct: 64644964 tctgtcttatttcggtcattaaaat 64644988
>Sscrofa_Chr01
|| Length = 315321322
Score = 551 bits (278), Expect = e-154
Identities = 399/438 (91%), Gaps = 1/438 (0%)
Strand = Plus / Plus
Query: 76 aaatgggcaagttcatgaaacccgggaaggtggtgctggtcctggctggtcgctactccg 135
|||||||||| ||||||||||| || || |||||| |||||||| ||||||||||||||
Sbjct: 63667221 aaatgggcaacttcatgaaacctggaaaagtggtgttggtcctgactggtcgctactcca 63667280
Query: 136 gacgcaaagcggtcatcgtaaagaacattgatgatggcacctcagaccgaccctacagcc 195
||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 63667281 gacgcaaagtggtcattgtaaagaatattgatgatggcacctcagactgaccctatagcc 63667340
Query: 196 atgctctggtggctggaattgatcgctatccccgcaaagtgacagctgccatgggcaaga 255
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 63667341 atgctctggtggctggaattgatcgctatccccacaaagtgacagcttccatgggcaaga 63667400
Query: 256 agaaaattgccaagagatcaaagattaagtcttttgtgaaagtttataattataatcacc 315
|||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 63667401 agaaaactgccaagaggtcaaagatcaagtcttttgtgaaagtttataattataatcacc 63667460
Query: 316 tcatgcccacaaggtactccgtggatatccccttggacaaaactgttgtcaataaggatg 375
||||||| ||||||||||| |||| ||| || |||||||||| |||| |||||| |||||
Sbjct: 63667461 tcatgcctacaaggtactcagtggttattccattggacaaaattgttatcaatatggatg 63667520
Query: 376 tcttcagagaccctgcactcaaacgcaaggcccgacgagaggccaaggtcaagttcgagg 435
|||||||||||||||| ||||||||||||| | || ||||||| | |||||||||||||
Sbjct: 63667521 tcttcagagaccctgctctcaaacgcaaggtctaac-agaggcccaagtcaagttcgagg 63667579
Query: 436 agagatacaagaccggcaagaacaaatggttcttccagaagctgcggttttaggtctgtc 495
| |||||||| |||| |||||||||||||||||||||||||||| ||||||| || ||||
Sbjct: 63667580 aaagatacaaaaccgacaagaacaaatggttcttccagaagctgtggttttaagtatgtc 63667639
Query: 496 ttatttcggtcattaaaa 513
||||||| ||||||||||
Sbjct: 63667640 ttatttcagtcattaaaa 63667657
>Sscrofa_ChrX
|| Length = 144288218
Score = 446 bits (225), Expect = e-123
Identities = 386/440 (87%), Gaps = 16/440 (3%)
Strand = Plus / Plus
Query: 76 aaatgggcaagttcatgaaacccgggaaggtggtgctggtcctggctggtcgctactccg 135
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 43972663 aaatgggcaagttcatgaaaccagggaaggtggtgctggtcctggctggttgctactcca 43972722
Query: 136 gacgcaaagcggtcatcgtaaagaacattgatgatggcacctcagaccgaccctacagcc 195
|| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct: 43972723 gatgcaaagcggtcattgtaaaaaacattgatgatggcacctcagaccaaccctatagcc 43972782
Query: 196 atgctctggtggctggaattgatcgctatccccgcaaagtgacagctgccatgggcaaga 255
| ||||||||| ||||||||||| ||| | ||| || |||||||||||||||||||||||
Sbjct: 43972783 acgctctggtgactggaattgattgctgt-cccacacagtgacagctgccatgggcaaga 43972841
Query: 256 agaaaattgccaagagatcaaagattaagtcttttgtgaaagtttataattataatcacc 315
|||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct: 43972842 agaaaactgccaagaggtcaaagatgaagtcttttgtgaaagt------ttataatcaca 43972895
Query: 316 tcatgcccacaaggtactccgtggatatccccttggacaaaactgttgtcaataaggatg 375
||||||||||||||||| |||||||| ||||||||||||||| ||||||| |
Sbjct: 43972896 tcatgcccacaaggtac---------atccccttagacaaaactgttgtccataaggagg 43972946
Query: 376 tcttcagagaccctgcactcaaacgcaaggcccgacgagaggccaaggtcaagttcgagg 435
| ||| |||||| ||| ||||||| |||||| || | |||||||||| |||||||| |||
Sbjct: 43972947 tgttcggagaccatgctctcaaactcaaggctcggcaagaggccaagatcaagttctagg 43973006
Query: 436 agagatacaagaccggcaagaacaaatggttcttccagaagctgcggttttaggtctgtc 495
| |||| ||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 43973007 aaagattcaaaaccagcaaaaacaaatggttcttccagaagctgcagttttaggtctgtc 43973066
Query: 496 ttatttcggtcattaaaatt 515
||||||| ||||||||||||
Sbjct: 43973067 ttatttcagtcattaaaatt 43973086
>Sscrofa_Chr12
|| Length = 63588571
Score = 329 bits (166), Expect = 1e-87
Identities = 173/174 (99%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 157 agaacattgatgatggcacctcagaccgaccctacagccatgctctggtggctggaattg 216
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19988030 agaacattgatgatggc-cctcagaccgaccctacagccatgctctggtggctggaattg 19988088
Query: 217 atcgctatccccgcaaagtgacagctgccatgggcaagaagaaaattgccaagagatcaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19988089 atcgctatccccgcaaagtgacagctgccatgggcaagaagaaaattgccaagagatcaa 19988148
Query: 277 agattaagtcttttgtgaaagtttataattataatcacctcatgcccacaaggt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19988149 agattaagtcttttgtgaaagtttataattataatcacctcatgcccacaaggt 19988202
Score = 224 bits (113), Expect = 5e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 327 aggtactccgtggatatccccttggacaaaactgttgtcaataaggatgtcttcagagac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19989084 aggtactccgtggatatccccttggacaaaactgttgtcaataaggatgtcttcagagac 19989143
Query: 387 cctgcactcaaacgcaaggcccgacgagaggccaaggtcaagttcgaggagag 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19989144 cctgcactcaaacgcaaggcccgacgagaggccaaggtcaagttcgaggagag 19989196
Score = 168 bits (85), Expect = 3e-39
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 70 ctgctgaaatgggcaagttcatgaaacccgggaaggtggtgctggtcctggctggtcgct 129
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19987404 ctgcagaaatgggcaagttcatgaaacccgggaaggtggtgctggtcctggctggtcgct 19987463
Query: 130 actccggacgcaaagcggtcatcgtaaag 158
|||||||||||||||||||||||||||||
Sbjct: 19987464 actccggacgcaaagcggtcatcgtaaag 19987492
Score = 155 bits (78), Expect = 4e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 438 agatacaagaccggcaagaacaaatggttcttccagaagctgcggttttaggtctgtctt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19989309 agatacaagaccggcaagaacaaatggttcttccagaagctgcggttttaggtctgtctt 19989368
Query: 498 atttcggtcattaaaatt 515
||||||||||||||||||
Sbjct: 19989369 atttcggtcattaaaatt 19989386
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 2 accctccgcggggtgaaaggttagcggaagtactctttcttcctttccgctgtatccccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19987097 accctccgcggggtgaaaggttagcggaagtactctttcttcctttccgctgtatccccg 19987156
Query: 62 agtggtcgctgctg 75
||||||||||||||
Sbjct: 19987157 agtggtcgctgctg 19987170
>Sscrofa_Chr02
|| Length = 162569375
Score = 260 bits (131), Expect = 9e-67
Identities = 347/418 (83%), Gaps = 12/418 (2%)
Strand = Plus / Minus
Query: 75 gaaatgggcaagttcatgaaacccgggaaggtggtgctggtcctggctggtcgctactcc 134
||||||||||||||||||||||| || ||||||||| ||||||||| |||||| |
Sbjct: 134874617 gaaatgggcaagttcatgaaaccagg--aggtggtgcgggtcctggccaaaggctactgc 134874560
Query: 135 ggacgcaaagcggtcatcgtaaagaacattgatgatggcacctcagaccgaccctacagc 194
|| |||| || ||||| | |||||||||||| ||||||||||||| | |||||| |||
Sbjct: 134874559 agatgcaaggccatcatcatgaagaacattgataatggcacctcagatcaaccctatagc 134874500
Query: 195 catgctctggtggctggaattgatcgctatccccgcaaagtgacagctgccatgggcaag 254
|||||||||||||||||||| | | || || || |||||||||||| || |||
Sbjct: 134874499 catgctctggtggctggaatcaacctctgtcacctcaaagtgacagc-------ggaaag 134874447
Query: 255 aagaaaattgcca---agagatcaaagattaagtcttttgtgaaagtttataattataat 311
|||||| | ||| |||| |||||||| |||||| ||||||||| ||||||||||||
Sbjct: 134874446 aagaaagtcaccaccaagaggtcaaagatccagtcttctgtgaaagtgtataattataat 134874387
Query: 312 cacctcatgcccacaaggtactccgtggatatccccttggacaaaactgttgtcaataag 371
|||||||| |||||||||| | | ||||||||||||||||||||||||||| ||| ||
Sbjct: 134874386 cacctcatacccacaaggtgccctgtggatatccccttggacaaaactgttttcagcaaa 134874327
Query: 372 gatgtcttcagagaccctgcactcaaacgcaaggcccgacgagaggccaaggtcaagttc 431
| || |||||||||||| | |||||| |||||||| ||| |||||||||||||||||||
Sbjct: 134874326 ggtgccttcagagaccccactctcaaatgcaaggccagacaagaggccaaggtcaagttc 134874267
Query: 432 gaggagagatacaagaccggcaagaacaaatggttcttccagaagctgcggttttagg 489
| ||||||| |||||| ||||||| ||||| ||||||||||||||| |||||||||
Sbjct: 134874266 aactagagataaaagaccagcaagaataaatgattcttccagaagctgtggttttagg 134874209
>Sscrofa_Chr08
|| Length = 148491826
Score = 167 bits (84), Expect = 1e-38
Identities = 115/124 (92%), Gaps = 1/124 (0%)
Strand = Plus / Minus
Query: 392 actcaaacgcaaggcccgacgagaggccaaggtcaagttcgaggagagatacaagaccgg 451
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct: 120675309 actcaaacgcaaggcccgactagaggccacagtcaagttcgaggagagatacaagactgg 120675250
Query: 452 caagaacaaatggttcttccagaagctgcggttttaggtctgtcttatttcggtcattaa 511
||||||||||| |||||||||||||||| | ||||||||||||||| |||| ||||||||
Sbjct: 120675249 caagaacaaat-gttcttccagaagctgtgattttaggtctgtcttttttcagtcattaa 120675191
Query: 512 aatt 515
||||
Sbjct: 120675190 aatt 120675187
>Sscrofa_Chr07
|| Length = 134764511
Score = 151 bits (76), Expect = 6e-34
Identities = 254/312 (81%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 164 tgatgatggcacctcagaccgaccctacagccatgctctggtggctggaattgatcgcta 223
||||||| ||| ||||||| | || |||||||||||||||||| || || ||| ||||
Sbjct: 83485661 tgatgatagcatctcagactaatccgacagccatgctctggtggttgcaactgactgcta 83485602
Query: 224 tccccgcaaagtgacagctgccatgggcaagaagaaaattgccaagagatcaaagattaa 283
||| |||||||| | | ||| | |||||||||||| |||||||||||||||| ||
Sbjct: 83485601 tccttacaaagtgatatccaccacagacaagaagaaaatcaccaagagatcaaagataaa 83485542
Query: 284 gtcttttgtgaaagtttataattataatcacctcatgcccacaaggtactccgtggatat 343
||||||||||| |||| |||| |||||||| ||||| |||| |||| || |||||||
Sbjct: 83485541 gtcttttgtgagagttcataactataatcaactcatctccaccaggtcttctgtggatac 83485482
Query: 344 ccccttggacaaaactgttgtcaataaggatgtcttcagagaccctgcactcaaacgcaa 403
|||||||| ||| || |||| | || ||||| |||||||||||||| || ||| |||
Sbjct: 83485481 tcccttgga-aaacctattgtgtacaatgatgttttcagagaccctgctcttaaatgcat 83485423
Query: 404 ggcccgacgagaggccaaggtcaagttcgaggagagatacaagaccggcaagaacaaatg 463
||||| || ||| |||||||| |||| ||||| |||||||||||| || |||||||| |
Sbjct: 83485422 ggcccaacaagacgccaaggttaagtctgaggaaagatacaagaccagccagaacaaaag 83485363
Query: 464 gttcttccagaa 475
||||||||||||
Sbjct: 83485362 gttcttccagaa 83485351
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,708,619
Number of extensions: 317
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 13
Length of query: 727
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 706
Effective length of database: 2,808,413,156
Effective search space: 1982739688136
Effective search space used: 1982739688136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)