Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012893
(1610 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091454.1| ras-related protein Ral-B [Bos taurus]. 350 2e-96
Alignment gi|NP_001029816.1| ras-related protein Ral-A [Bos taurus]. 308 7e-84
Alignment gi|NP_001103471.1| GTPase KRas [Bos taurus]. 180 4e-45
Alignment gi|NP_001229275.1| GTPase HRas isoform 1 [Bos taurus]. 178 1e-44
Alignment gi|NP_001091458.1| GTPase NRas [Bos taurus]. 178 1e-44
Alignment gi|NP_001092480.1| ras-related protein R-Ras2 [Bos taurus]. 177 2e-44
Alignment gi|NP_001033777.1| ras-related protein R-Ras [Bos taurus]. 169 6e-42
Alignment gi|NP_001069168.1| ras-related protein Rap-2c precursor [Bos ta... 168 1e-41
Alignment gi|NP_787018.1| ras-related protein Rap-1b precursor [Bos tauru... 167 2e-41
Alignment gi|NP_001179871.1| ras-related protein Rap-2a [Bos taurus]. 167 2e-41
>ref|NP_001091454.1| ras-related protein Ral-B [Bos taurus].
Length = 206
Score = 350 bits (898), Expect = 2e-96
Identities = 181/183 (98%), Positives = 181/183 (98%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 120
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
IPLLVVGNKSDLEERRQV VEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIR KK
Sbjct: 121 IPLLVVGNKSDLEERRQVLVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 180
Query: 792 MSE 800
MSE
Sbjct: 181 MSE 183
>ref|NP_001029816.1| ras-related protein Ral-A [Bos taurus].
Length = 206
Score = 308 bits (790), Expect = 7e-84
Identities = 156/183 (85%), Positives = 170/183 (92%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANK K Q+SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFL VFSITE ESF ATA+FREQILRVK E++
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-EDEN 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
+P L+VGNKSDLE++RQV VEEA+ +A++W V YVETSAKTRANVDKVFFDLMREIRA+K
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 792 MSE 800
M +
Sbjct: 180 MED 182
>ref|NP_001103471.1| GTPase KRas [Bos taurus].
Length = 188
Score = 180 bits (456), Expect = 4e-45
Identities = 90/166 (54%), Positives = 124/166 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK ED +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
R V ++A+ A +G+ ++ETSAKTR VD F+ L+REIR K
Sbjct: 123 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 167
>ref|NP_001229275.1| GTPase HRas isoform 1 [Bos taurus].
Length = 189
Score = 178 bits (452), Expect = 1e-44
Identities = 89/167 (53%), Positives = 125/167 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF ++REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINHVKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDL-A 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKM 794
R V +A+ A +G+ Y+ETSAKTR V+ F+ L+REIR K+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKV 168
>ref|NP_001091458.1| GTPase NRas [Bos taurus].
Length = 189
Score = 178 bits (451), Expect = 1e-44
Identities = 88/169 (52%), Positives = 126/169 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDL-P 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R V ++A A+ +G+ ++ETSAKTR V+ F+ L+REIR +M +
Sbjct: 122 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 170
>ref|NP_001092480.1| ras-related protein R-Ras2 [Bos taurus].
Length = 204
Score = 177 bits (450), Expect = 2e-44
Identities = 89/177 (50%), Positives = 126/177 (71%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAA + S +++++VG GGVGKSALT+QF+ FV DY+PT DSY K+ V+D
Sbjct: 1 MAAAGWRDGSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDR 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
++DILDTAGQE++ A+R+ Y R+GEGFLLVFS+T+ SF +F+ QILRVK + D+
Sbjct: 61 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK-DRDE 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 782
P++++GNK+DL+ +RQV EE + A + V Y+E SAK R NVD+ F +L+R IR
Sbjct: 120 FPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
>ref|NP_001033777.1| ras-related protein R-Ras [Bos taurus].
Length = 218
Score = 169 bits (428), Expect = 6e-42
Identities = 86/169 (50%), Positives = 115/169 (68%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
HK+++VG GGVGKSALT+QF+ FV DY+PT DSY K +DG ++DILDTAGQE+
Sbjct: 30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGVPARLDILDTAGQEE 89
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+R+ Y R+G GFLLVF+I + +SF + QILRVK + D P+++VGNK+DLE
Sbjct: 90 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLET 148
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
+RQVP EA + V Y E SAK R NVD+ F L+R +R + E
Sbjct: 149 QRQVPRSEASTFSASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 197
>ref|NP_001069168.1| ras-related protein Rap-2c precursor [Bos taurus].
Length = 183
Score = 168 bits (426), Expect = 1e-41
Identities = 80/169 (47%), Positives = 123/169 (72%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+A++RD Y ++G+GF+LV+S+ +SF R+QI+RVK E K+PL++VGNK DLE
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYE-KVPLILVGNKVDLEP 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R+V E RA A+EWG ++ETSAK+++ VD++F +++R++ + E
Sbjct: 123 EREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPE 171
>ref|NP_787018.1| ras-related protein Rap-1b precursor [Bos taurus].
Length = 184
Score = 167 bits (424), Expect = 2e-41
Identities = 81/166 (48%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK + D +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTDDVPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168
>ref|NP_001179871.1| ras-related protein Rap-2a [Bos taurus].
Length = 183
Score = 167 bits (424), Expect = 2e-41
Identities = 79/162 (48%), Positives = 120/162 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+A++RD Y ++G+GF+LV+S+ +SF R+QI+RVK E K+P+++VGNK DLE
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDLES 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREI 779
R+V E RA AEEWG ++ETSAK++ VD++F +++R++
Sbjct: 123 EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,537,653
Number of extensions: 1203572
Number of successful extensions: 4270
Number of sequences better than 1.0e-05: 168
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 168
Length of query: 536
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 429
Effective length of database: 14,140,958
Effective search space: 6066470982
Effective search space used: 6066470982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012893
(1610 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541001.2| PREDICTED: similar to Ras-related protein Ral-B... 353 2e-97
Alignment gi|XP_858312.1| PREDICTED: similar to Ras-related protein Ral-B... 344 2e-94
Alignment gi|XP_533083.2| PREDICTED: similar to ras related v-ral simian ... 308 7e-84
Alignment gi|XP_856387.1| PREDICTED: similar to ras related v-ral simian ... 300 2e-81
Alignment gi|XP_540523.2| PREDICTED: similar to Transforming protein p21/... 179 9e-45
Alignment gi|XP_848629.1| PREDICTED: similar to Transforming protein N-Ra... 178 2e-44
Alignment gi|XP_533617.1| PREDICTED: similar to Ras-related protein R-Ras... 171 2e-42
Alignment gi|XP_851250.1| PREDICTED: similar to RAS related protein 1b [C... 167 2e-41
Alignment gi|XP_863066.1| PREDICTED: similar to Ras-related protein Rap-1... 167 3e-41
Alignment gi|XP_540344.2| PREDICTED: similar to Ras-related protein Rap-1... 167 3e-41
>ref|XP_541001.2| PREDICTED: similar to Ras-related protein Ral-B isoform 1 [Canis
familiaris].
Length = 206
Score = 353 bits (907), Expect = 2e-97
Identities = 181/183 (98%), Positives = 182/183 (99%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 120
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
IPLLVVGNKSDLEERRQVP+EEAR KAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK
Sbjct: 121 IPLLVVGNKSDLEERRQVPIEEARTKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 180
Query: 792 MSE 800
MSE
Sbjct: 181 MSE 183
>ref|XP_858312.1| PREDICTED: similar to Ras-related protein Ral-B isoform 2 [Canis
familiaris].
Length = 220
Score = 344 bits (882), Expect = 2e-94
Identities = 181/197 (91%), Positives = 182/197 (92%), Gaps = 14/197 (7%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDE--------------FVEDYEPT 389
MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDE FVEDYEPT
Sbjct: 1 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEVRHARHRRLFTEPNFVEDYEPT 60
Query: 390 KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE 569
KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE
Sbjct: 61 KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE 120
Query: 570 FREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVD 749
FREQILRVKAEEDKIPLLVVGNKSDLEERRQVP+EEAR KAEEWGVQYVETSAKTRANVD
Sbjct: 121 FREQILRVKAEEDKIPLLVVGNKSDLEERRQVPIEEARTKAEEWGVQYVETSAKTRANVD 180
Query: 750 KVFFDLMREIRAKKMSE 800
KVFFDLMREIRAKKMSE
Sbjct: 181 KVFFDLMREIRAKKMSE 197
>ref|XP_533083.2| PREDICTED: similar to ras related v-ral simian leukemia viral
oncogene homolog A isoform 1 [Canis familiaris].
Length = 206
Score = 308 bits (790), Expect = 7e-84
Identities = 156/183 (85%), Positives = 170/183 (92%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANK K Q+SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFL VFSITE ESF ATA+FREQILRVK E++
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-EDEN 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
+P L+VGNKSDLE++RQV VEEA+ +A++W V YVETSAKTRANVDKVFFDLMREIRA+K
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 792 MSE 800
M +
Sbjct: 180 MED 182
>ref|XP_856387.1| PREDICTED: similar to ras related v-ral simian leukemia viral
oncogene homolog A isoform 3 [Canis familiaris].
Length = 216
Score = 300 bits (769), Expect = 2e-81
Identities = 156/193 (80%), Positives = 170/193 (88%), Gaps = 10/193 (5%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDE----------FVEDYEPTKADS 401
MAANK K Q+SLALHKVIMVGSGGVGKSALTLQFMYDE FVEDYEPTKADS
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEVSAGFIMGIKFVEDYEPTKADS 60
Query: 402 YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQ 581
YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL VFSITE ESF ATA+FREQ
Sbjct: 61 YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ 120
Query: 582 ILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFF 761
ILRVK E++ +P L+VGNKSDLE++RQV VEEA+ +A++W V YVETSAKTRANVDKVFF
Sbjct: 121 ILRVK-EDENVPFLLVGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFF 179
Query: 762 DLMREIRAKKMSE 800
DLMREIRA+KM +
Sbjct: 180 DLMREIRARKMED 192
>ref|XP_540523.2| PREDICTED: similar to Transforming protein p21/H-Ras-1 (c-H-ras)
[Canis familiaris].
Length = 226
Score = 179 bits (453), Expect = 9e-45
Identities = 89/167 (53%), Positives = 125/167 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 41 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 100
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF ++REQI RVK + D +P+++VGNK DL
Sbjct: 101 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDL-A 158
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKM 794
R V +A+ A +G+ Y+ETSAKTR V+ F+ L+REIR K+
Sbjct: 159 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKV 205
>ref|XP_848629.1| PREDICTED: similar to Transforming protein N-Ras [Canis
familiaris].
Length = 189
Score = 178 bits (451), Expect = 2e-44
Identities = 88/169 (52%), Positives = 126/169 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDL-P 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R V ++A A+ +G+ ++ETSAKTR V+ F+ L+REIR +M +
Sbjct: 122 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 170
>ref|XP_533617.1| PREDICTED: similar to Ras-related protein R-Ras (p23) [Canis
familiaris].
Length = 218
Score = 171 bits (432), Expect = 2e-42
Identities = 87/169 (51%), Positives = 115/169 (68%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
HK+++VG GGVGKSALT+QF+ FV DY+PT DSY K +DG ++DILDTAGQE+
Sbjct: 30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGVPARLDILDTAGQEE 89
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+R+ Y R+G GFLLVF+I + +SF + QILRVK + D P+++VGNK+DLE
Sbjct: 90 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPIVLVGNKADLET 148
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
+RQVP EA A V Y E SAK R NVD+ F L+R +R + E
Sbjct: 149 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 197
>ref|XP_851250.1| PREDICTED: similar to RAS related protein 1b [Canis familiaris].
Length = 184
Score = 167 bits (424), Expect = 2e-41
Identities = 81/166 (48%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK + D +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTDDVPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168
>ref|XP_863066.1| PREDICTED: similar to Ras-related protein Rap-1A (Ras-related
protein Krev-1) isoform 2 [Canis familiaris].
Length = 184
Score = 167 bits (423), Expect = 3e-41
Identities = 82/166 (49%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK ED +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED-VPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168
>ref|XP_540344.2| PREDICTED: similar to Ras-related protein Rap-1A (Ras-related
protein Krev-1) isoform 1 [Canis familiaris].
Length = 184
Score = 167 bits (423), Expect = 3e-41
Identities = 82/166 (49%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK ED +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED-VPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,956,237
Number of extensions: 1243114
Number of successful extensions: 4362
Number of sequences better than 1.0e-05: 159
Number of HSP's gapped: 4176
Number of HSP's successfully gapped: 159
Length of query: 536
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 428
Effective length of database: 15,274,216
Effective search space: 6537364448
Effective search space used: 6537364448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012893
(1610 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359496.1| PREDICTED: ras-related protein Ral-B-like [S... 355 3e-98
Alignment gi|XP_003359495.1| PREDICTED: ras-related protein Ral-B-like [S... 355 3e-98
Alignment gi|XP_003360264.1| PREDICTED: ras-related protein Ral-A-like [S... 308 6e-84
Alignment gi|XP_003126475.1| PREDICTED: GTPase KRas-like [Sus scrofa]. 180 2e-45
Alignment gi|NP_001038002.1| GTPase NRas precursor [Sus scrofa]. 178 9e-45
Alignment gi|XP_003356046.1| PREDICTED: ras-related protein R-Ras-like [S... 171 1e-42
Alignment gi|XP_003135433.2| PREDICTED: ras-related protein Rap-2c-like [... 168 7e-42
Alignment gi|XP_003361755.1| PREDICTED: ras-related protein Rap-1b [Sus s... 167 1e-41
Alignment gi|XP_003355289.1| PREDICTED: ras-related protein Rap-1A isofor... 167 2e-41
Alignment gi|XP_001928684.1| PREDICTED: ras-related protein Rap-1A isofor... 167 2e-41
>ref|XP_003359496.1| PREDICTED: ras-related protein Ral-B-like [Sus scrofa].
Length = 206
Score = 355 bits (912), Expect = 3e-98
Identities = 183/183 (100%), Positives = 183/183 (100%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 120
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK
Sbjct: 121 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 180
Query: 792 MSE 800
MSE
Sbjct: 181 MSE 183
>ref|XP_003359495.1| PREDICTED: ras-related protein Ral-B-like [Sus scrofa].
Length = 206
Score = 355 bits (912), Expect = 3e-98
Identities = 183/183 (100%), Positives = 183/183 (100%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 120
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK
Sbjct: 121 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 180
Query: 792 MSE 800
MSE
Sbjct: 181 MSE 183
>ref|XP_003360264.1| PREDICTED: ras-related protein Ral-A-like [Sus scrofa].
Length = 206
Score = 308 bits (789), Expect = 6e-84
Identities = 156/183 (85%), Positives = 170/183 (92%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANK K Q+SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFL VFSITE ESF ATA+FREQILRVK E++
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITELESFAATADFREQILRVK-EDEN 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
+P L+VGNKSDLE++RQV VEEA+ +A++W V YVETSAKTRANVDKVFFDLMREIRA+K
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 792 MSE 800
M +
Sbjct: 180 MED 182
>ref|XP_003126475.1| PREDICTED: GTPase KRas-like [Sus scrofa].
Length = 188
Score = 180 bits (456), Expect = 2e-45
Identities = 90/166 (54%), Positives = 124/166 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK ED +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
R V ++A+ A +G+ ++ETSAKTR VD F+ L+REIR K
Sbjct: 123 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 167
>ref|NP_001038002.1| GTPase NRas precursor [Sus scrofa].
Length = 189
Score = 178 bits (451), Expect = 9e-45
Identities = 88/169 (52%), Positives = 126/169 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDL-P 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R V ++A A+ +G+ ++ETSAKTR V+ F+ L+REIR +M +
Sbjct: 122 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 170
>ref|XP_003356046.1| PREDICTED: ras-related protein R-Ras-like [Sus scrofa].
Length = 218
Score = 171 bits (433), Expect = 1e-42
Identities = 86/163 (52%), Positives = 114/163 (69%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
HK+++VG GGVGKSALT+QF+ FV DY+PT DSY K +DG ++DILDTAGQE+
Sbjct: 30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGVPARLDILDTAGQEE 89
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+R+ Y R+G GFLLVF+I + +SF + QILRVK + D P+++VGNK+DLE
Sbjct: 90 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPIVLVGNKADLET 148
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 782
+RQVP EA A + V Y E SAK R NVD+ F L+R +R
Sbjct: 149 QRQVPRSEASAFSNSHHVAYFEASAKLRLNVDEAFEQLVRAVR 191
>ref|XP_003135433.2| PREDICTED: ras-related protein Rap-2c-like [Sus scrofa].
Length = 183
Score = 168 bits (426), Expect = 7e-42
Identities = 80/169 (47%), Positives = 123/169 (72%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+A++RD Y ++G+GF+LV+S+ +SF R+QI+RVK E K+PL++VGNK DLE
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYE-KVPLILVGNKVDLEP 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R+V E RA A+EWG ++ETSAK+++ VD++F +++R++ + E
Sbjct: 123 EREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPE 171
>ref|XP_003361755.1| PREDICTED: ras-related protein Rap-1b [Sus scrofa].
Length = 184
Score = 167 bits (424), Expect = 1e-41
Identities = 81/166 (48%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK + D +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTDDVPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168
>ref|XP_003355289.1| PREDICTED: ras-related protein Rap-1A isoform 2 [Sus scrofa].
Length = 184
Score = 167 bits (423), Expect = 2e-41
Identities = 82/166 (49%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK ED +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED-VPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168
>ref|XP_001928684.1| PREDICTED: ras-related protein Rap-1A isoform 1 [Sus scrofa].
Length = 184
Score = 167 bits (423), Expect = 2e-41
Identities = 82/166 (49%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK ED +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED-VPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,611,824
Number of extensions: 775670
Number of successful extensions: 2804
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 2649
Number of HSP's successfully gapped: 127
Length of query: 536
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 432
Effective length of database: 8,754,644
Effective search space: 3782006208
Effective search space used: 3782006208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012893
(1610 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071722.1| ras-related protein Ral-B precursor [Mus muscul... 347 2e-95
Alignment gi|NP_062364.3| ras-related protein Ral-A precursor [Mus muscul... 308 1e-83
Alignment gi|NP_067259.4| GTPase KRas [Mus musculus]. 180 2e-45
Alignment gi|NP_001123915.1| GTPase HRas isoform 1 [Mus musculus]. 179 6e-45
Alignment gi|NP_032310.2| GTPase HRas isoform 1 [Mus musculus]. 179 6e-45
Alignment gi|NP_035067.2| GTPase NRas precursor [Mus musculus]. 178 1e-44
Alignment gi|NP_080122.2| ras-related protein R-Ras2 precursor [Mus muscu... 177 2e-44
Alignment gi|NP_766001.1| ras-related protein Rap-2c precursor [Mus muscu... 168 1e-41
Alignment gi|NP_083795.2| ras-related protein Rap-2a precursor [Mus muscu... 167 2e-41
Alignment gi|NP_077777.1| ras-related protein Rap-1b precursor [Mus muscu... 167 2e-41
>ref|NP_071722.1| ras-related protein Ral-B precursor [Mus musculus].
Length = 206
Score = 347 bits (890), Expect = 2e-95
Identities = 177/183 (96%), Positives = 179/183 (97%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANK KSQ SL LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKGKSQGSLVLHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVK+EEDK
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDK 120
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
IPLLVVGNKSDLEERRQVPV+EAR KAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK
Sbjct: 121 IPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 180
Query: 792 MSE 800
MSE
Sbjct: 181 MSE 183
>ref|NP_062364.3| ras-related protein Ral-A precursor [Mus musculus].
Length = 206
Score = 308 bits (788), Expect = 1e-83
Identities = 156/183 (85%), Positives = 170/183 (92%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANK K Q+SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFL VFSITE ESF ATA+FREQILRVK E++
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-EDEN 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
+P L+VGNKSDLE++RQV VEEA+ +A++W V YVETSAKTRANVDKVFFDLMREIRA+K
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 792 MSE 800
M +
Sbjct: 180 MED 182
>ref|NP_067259.4| GTPase KRas [Mus musculus].
Length = 188
Score = 180 bits (457), Expect = 2e-45
Identities = 90/166 (54%), Positives = 124/166 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK ED +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
R V ++A+ A +G+ ++ETSAKTR VD F+ L+REIR K
Sbjct: 123 -RTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 167
>ref|NP_001123915.1| GTPase HRas isoform 1 [Mus musculus].
Length = 189
Score = 179 bits (454), Expect = 6e-45
Identities = 89/167 (53%), Positives = 125/167 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF ++REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDL-A 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKM 794
R V +A+ A +G+ Y+ETSAKTR V+ F+ L+REIR K+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>ref|NP_032310.2| GTPase HRas isoform 1 [Mus musculus].
Length = 189
Score = 179 bits (454), Expect = 6e-45
Identities = 89/167 (53%), Positives = 125/167 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF ++REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDL-A 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKM 794
R V +A+ A +G+ Y+ETSAKTR V+ F+ L+REIR K+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>ref|NP_035067.2| GTPase NRas precursor [Mus musculus].
Length = 189
Score = 178 bits (451), Expect = 1e-44
Identities = 88/169 (52%), Positives = 126/169 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDL-P 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R V ++A A+ +G+ ++ETSAKTR V+ F+ L+REIR +M +
Sbjct: 122 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 170
>ref|NP_080122.2| ras-related protein R-Ras2 precursor [Mus musculus].
Length = 204
Score = 177 bits (450), Expect = 2e-44
Identities = 89/177 (50%), Positives = 126/177 (71%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAA + S +++++VG GGVGKSALT+QF+ FV DY+PT DSY K+ V+D
Sbjct: 1 MAAAGWRDGSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDR 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
++DILDTAGQE++ A+R+ Y R+GEGFLLVFS+T+ SF +F+ QILRVK + D+
Sbjct: 61 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK-DRDE 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 782
P++++GNK+DL+ +RQV EE + A + V Y+E SAK R NVD+ F +L+R IR
Sbjct: 120 FPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
>ref|NP_766001.1| ras-related protein Rap-2c precursor [Mus musculus].
Length = 183
Score = 168 bits (426), Expect = 1e-41
Identities = 80/169 (47%), Positives = 123/169 (72%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+A++RD Y ++G+GF+LV+S+ +SF R+QI+RVK E K+PL++VGNK DLE
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYE-KVPLILVGNKVDLEP 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R+V E RA A+EWG ++ETSAK+++ VD++F +++R++ + E
Sbjct: 123 EREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPE 171
>ref|NP_083795.2| ras-related protein Rap-2a precursor [Mus musculus].
Length = 183
Score = 167 bits (424), Expect = 2e-41
Identities = 79/162 (48%), Positives = 120/162 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+A++RD Y ++G+GF+LV+S+ +SF R+QI+RVK E K+P+++VGNK DLE
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDLES 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREI 779
R+V E RA AEEWG ++ETSAK++ VD++F +++R++
Sbjct: 123 EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>ref|NP_077777.1| ras-related protein Rap-1b precursor [Mus musculus].
Length = 184
Score = 167 bits (424), Expect = 2e-41
Identities = 81/166 (48%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +D ++ ++ILDTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+RD Y ++G+GF LV+SIT +F + REQILRVK + D +P+++VGNK DLE+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTDDVPMILVGNKCDLED 122
Query: 654 RRQVPVEEARAKAEEW-GVQYVETSAKTRANVDKVFFDLMREIRAK 788
R V E+ + A +W ++E+SAK++ NV+++F+DL+R+I K
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,859,166
Number of extensions: 1026426
Number of successful extensions: 3435
Number of sequences better than 1.0e-05: 151
Number of HSP's gapped: 3230
Number of HSP's successfully gapped: 151
Length of query: 536
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 430
Effective length of database: 12,433,743
Effective search space: 5346509490
Effective search space used: 5346509490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012893
(1610 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002872.1| ras-related protein Ral-B precursor [Homo sapie... 351 1e-96
Alignment gi|NP_005393.2| ras-related protein Ral-A precursor [Homo sapie... 309 5e-84
Alignment gi|NP_004976.2| GTPase KRas isoform b precursor [Homo sapiens]. 180 4e-45
Alignment gi|NP_001123914.1| GTPase HRas isoform 1 [Homo sapiens]. 179 7e-45
Alignment gi|NP_005334.1| GTPase HRas isoform 1 [Homo sapiens]. 179 7e-45
Alignment gi|NP_002515.1| GTPase NRas [Homo sapiens]. 178 1e-44
Alignment gi|NP_203524.1| GTPase KRas isoform a precursor [Homo sapiens]. 178 1e-44
Alignment gi|NP_036382.2| ras-related protein R-Ras2 isoform a [Homo sapi... 177 2e-44
Alignment gi|NP_006261.1| ras-related protein R-Ras precursor [Homo sapie... 169 5e-42
Alignment gi|NP_067006.3| ras-related protein Rap-2c precursor [Homo sapi... 168 1e-41
>ref|NP_002872.1| ras-related protein Ral-B precursor [Homo sapiens].
Length = 206
Score = 351 bits (901), Expect = 1e-96
Identities = 180/183 (98%), Positives = 181/183 (98%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANKSK QSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKSKGQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 120
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
IPLLVVGNKSDLEERRQVPVEEAR+KAEEWGVQYVETSAKTRANVDKVFFDLMREIR KK
Sbjct: 121 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKK 180
Query: 792 MSE 800
MSE
Sbjct: 181 MSE 183
>ref|NP_005393.2| ras-related protein Ral-A precursor [Homo sapiens].
Length = 206
Score = 309 bits (791), Expect = 5e-84
Identities = 157/183 (85%), Positives = 170/183 (92%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAANK K Q+SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
EVQIDILDTAGQEDYAAIRDNYFRSGEGFL VFSITE ESF ATA+FREQILRVK E++
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-EDEN 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
+P L+VGNKSDLE++RQV VEEA+ +AE+W V YVETSAKTRANVDKVFFDLMREIRA+K
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179
Query: 792 MSE 800
M +
Sbjct: 180 MED 182
>ref|NP_004976.2| GTPase KRas isoform b precursor [Homo sapiens].
Length = 188
Score = 180 bits (456), Expect = 4e-45
Identities = 90/166 (54%), Positives = 124/166 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK ED +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKK 791
R V ++A+ A +G+ ++ETSAKTR VD F+ L+REIR K
Sbjct: 123 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 167
>ref|NP_001123914.1| GTPase HRas isoform 1 [Homo sapiens].
Length = 189
Score = 179 bits (454), Expect = 7e-45
Identities = 89/167 (53%), Positives = 125/167 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF ++REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDL-A 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKM 794
R V +A+ A +G+ Y+ETSAKTR V+ F+ L+REIR K+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>ref|NP_005334.1| GTPase HRas isoform 1 [Homo sapiens].
Length = 189
Score = 179 bits (454), Expect = 7e-45
Identities = 89/167 (53%), Positives = 125/167 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF ++REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMVLVGNKCDL-A 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKM 794
R V +A+ A +G+ Y+ETSAKTR V+ F+ L+REIR K+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>ref|NP_002515.1| GTPase NRas [Homo sapiens].
Length = 189
Score = 178 bits (451), Expect = 1e-44
Identities = 88/169 (52%), Positives = 126/169 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK + D +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMVLVGNKCDL-P 121
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R V ++A A+ +G+ ++ETSAKTR V+ F+ L+REIR +M +
Sbjct: 122 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 170
>ref|NP_203524.1| GTPase KRas isoform a precursor [Homo sapiens].
Length = 189
Score = 178 bits (451), Expect = 1e-44
Identities = 88/169 (52%), Positives = 126/169 (74%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
Y+A+RD Y R+GEGFL VF+I +SF +REQI RVK ED +P+++VGNK DL
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R V ++A+ A +G+ ++ETSAKTR V+ F+ L+REIR ++ +
Sbjct: 123 -RTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKK 170
>ref|NP_036382.2| ras-related protein R-Ras2 isoform a [Homo sapiens].
Length = 204
Score = 177 bits (450), Expect = 2e-44
Identities = 89/177 (50%), Positives = 126/177 (71%)
Frame = +3
Query: 252 MAANKSKSQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 431
MAA + S +++++VG GGVGKSALT+QF+ FV DY+PT DSY K+ V+D
Sbjct: 1 MAAAGWRDGSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDR 60
Query: 432 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 611
++DILDTAGQE++ A+R+ Y R+GEGFLLVFS+T+ SF +F+ QILRVK + D+
Sbjct: 61 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK-DRDE 119
Query: 612 IPLLVVGNKSDLEERRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 782
P++++GNK+DL+ +RQV EE + A + V Y+E SAK R NVD+ F +L+R IR
Sbjct: 120 FPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
>ref|NP_006261.1| ras-related protein R-Ras precursor [Homo sapiens].
Length = 218
Score = 169 bits (429), Expect = 5e-42
Identities = 87/169 (51%), Positives = 115/169 (68%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
HK+++VG GGVGKSALT+QF+ FV DY+PT DSY K +DG ++DILDTAGQE+
Sbjct: 30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 89
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+ A+R+ Y R+G GFLLVF+I + +SF + QILRVK + D P+++VGNK+DLE
Sbjct: 90 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLES 148
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
+RQVP EA A V Y E SAK R NVD+ F L+R +R + E
Sbjct: 149 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 197
>ref|NP_067006.3| ras-related protein Rap-2c precursor [Homo sapiens].
Length = 183
Score = 168 bits (426), Expect = 1e-41
Identities = 80/169 (47%), Positives = 123/169 (72%)
Frame = +3
Query: 294 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 473
+KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 474 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 653
+A++RD Y ++G+GF+LV+S+ +SF R+QI+RVK E K+PL++VGNK DLE
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYE-KVPLILVGNKVDLEP 122
Query: 654 RRQVPVEEARAKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSE 800
R+V E RA A+EWG ++ETSAK+++ VD++F +++R++ + E
Sbjct: 123 EREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPE 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,835,511
Number of extensions: 1223170
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 201
Number of HSP's gapped: 4003
Number of HSP's successfully gapped: 201
Length of query: 536
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 429
Effective length of database: 14,770,016
Effective search space: 6336336864
Effective search space used: 6336336864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012893
(1610 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1174 0.0
Sscrofa_Chr18 88 2e-14
>Sscrofa_Chr15
|| Length = 157681621
Score = 1174 bits (592), Expect = 0.0
Identities = 726/771 (94%), Gaps = 9/771 (1%)
Strand = Plus / Plus
Query: 844 gttttaaggagaggtgctgcttactgtgaaggctaaggtgctgggtgcatcagtcgccac 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36695288 gttttaaggagaggtgctgcttactgtgaaggctaaggtgctgggtgcatcagtcgccac 36695347
Query: 904 taaggacagagggcaggctcctcagaaggcgacagtccacctctcggcctgttccctgct 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36695348 taaggacagagggcaggctcctcagaaggcgacagtccacctctcggcctgttccctgct 36695407
Query: 964 ctccccagcctcactcacacacacttctgtaaatggggaaaatatctg--cagcagtggc 1021
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 36695408 ctccccagcctcactcacacacacttctgtaaatggggaaaatatctgtgcagcagtggc 36695467
Query: 1022 tggcagaagaaagaagcccttgactgtgcaatggaacagctcctttgtcaggaggtttca 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36695468 tggcagaagaaagaagcccttgactgtgcaatggaacagctcctttgtcaggaggtttca 36695527
Query: 1082 gagtttcttccctccatcccttccacaagttacccgcatatgtggtgctataggcaggag 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36695528 gagtttcttccctccatcccttccacaagttacccgcatatgtggtgctataggcaggag 36695587
Query: 1142 ttagccaagtgttaagtaaaaagaaaaaggactatatcctggcttctttccccaccccct 1201
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 36695588 ttagccaagtgttaagtaaaaagaaaaaggactatatcctggcttctgtccccaccccct 36695647
Query: 1202 agttttgtaacattagcttctttggttttaacatgaagatgtcttattttattagatctt 1261
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 36695648 agttttgtaacattagcttctttggttttaacatgaaaatgtcttattttattaggtctt 36695707
Query: 1262 gacagctangggggtggctnnagactnnnnnnnnnnnnnaacctctgtcagctctccagt 1321
|||||||| |||||||||| || |||||||||||||||||||||
Sbjct: 36695708 gacagcta-gggggtggctaagacctccccccaccccccaacctctgtcagctctccagt 36695766
Query: 1322 aggtctcagaaacatgcattangtttctatgacggcggaacattcagagatttttctgta 1381
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 36695767 aggtctcagaaacatgcattaggttctaatgacggcggaacattcagagatttttctgta 36695826
Query: 1382 tgaatctcttagccatcccctgtgggtctgaagcagagctnagaaaataaatttgaattg 1441
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 36695827 tgaatctcttagccatcccctgtgggtctgaagcagagctaagaaaataaatttgaattg 36695886
Query: 1442 gacccatgt-ggttcacatngaatccttctcagtatgaaaagtgaaagtcgtattctgca 1500
|| |||||| |||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct: 36695887 ga-ccatgtgggttcatatgaaatccttctcagtatgaaaagtgaaagtcgtattcttca 36695945
Query: 1501 tattgaangatcagccnatgggagcctgtgttggctattttcct-ctatagcaacctgat 1559
||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 36695946 tattgaaagatcagccaatgggagtctgtgttggctattttcctcctatagcatcctgat 36696005
Query: 1560 ttttctgtaagagcttctttttnatagactangtgaaggctcgagagcaaa 1610
||||||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct: 36696006 ttttctgtaagag---ctttttaatagactaggtgaaggctcgagagcaaa 36696053
Score = 420 bits (212), Expect = e-114
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 364 agttcgtagaagactatgaacccaccaaagcggacagttacagaaagaaagtggttcttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36686542 agttcgtagaagactatgaacccaccaaagcggacagttacagaaagaaagtggttcttg 36686601
Query: 424 atggcgaggaagtccagatagatattctggacacggctggccaggaggactacgcagcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36686602 atggcgaggaagtccagatagatattctggacacggctggccaggaggactacgcagcca 36686661
Query: 484 ttcgagacaactacttccgaagtggggagggtttcctcctcgtgttctcaatcacagagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36686662 ttcgagacaactacttccgaagtggggagggtttcctcctcgtgttctcaatcacagagc 36686721
Query: 544 atgaatcctttacagcaactgccgaattcagg 575
||||||||||||||||||||||||||||||||
Sbjct: 36686722 atgaatcctttacagcaactgccgaattcagg 36686753
Score = 365 bits (184), Expect = 5e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 572 cagggagcagatcctccgtgtgaaggcagaagaagataaaatcccgctgctggttgtggg 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36691618 cagggagcagatcctccgtgtgaaggcagaagaagataaaatcccgctgctggttgtggg 36691677
Query: 632 gaacaagtcggacctggaggagcggaggcaggtgccagtggaggaggccagggccaaggc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36691678 gaacaagtcggacctggaggagcggaggcaggtgccagtggaggaggccagggccaaggc 36691737
Query: 692 cgaggagtggggcgtgcagtacgtggagacgtcggccaagacgcgcgccaacgtggacaa 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36691738 cgaggagtggggcgtgcagtacgtggagacgtcggccaagacgcgcgccaacgtggacaa 36691797
Query: 752 ggtg 755
||||
Sbjct: 36691798 ggtg 36691801
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 198 agctcttccactgggtcctctgtccgtgtttcgtgacctcagaaaaccagcaggatggct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36674680 agctcttccactgggtcctctgtccgtgtttcgtgacctcagaaaaccagcaggatggct 36674739
Query: 258 gccaacaagagtaagagccagagctccttggcccttcacaaggtgatcatggtcggcagt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36674740 gccaacaagagtaagagccagagctccttggcccttcacaaggtgatcatggtcggcagt 36674799
Query: 318 ggcggggtcggcaagtcggcactgacgctccagttcatgtacgatgag 365
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36674800 ggcggggtcggcaagtcggcactgacgctccagttcatgtacgatgag 36674847
Score = 246 bits (124), Expect = 3e-62
Identities = 130/132 (98%)
Strand = Plus / Plus
Query: 1 ggcgcgctctcgagggacagggttgccttggcgacgccgggcgcgcgctcggggggtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36646625 ggcgcgctctcgagggacagggttgccttggcgacgccgggcgcgcgctcggggggtggg 36646684
Query: 61 gaagcgaaccggcagctcaatgacaaatcggtggggtgcggctggggtccggcccccggc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36646685 gaagcgagccggcagctcaatgacaaatcggtggggtgcggctggggtccggcccccggc 36646744
Query: 121 agaggcgaagga 132
||||| ||||||
Sbjct: 36646745 agaggagaagga 36646756
>Sscrofa_Chr18
|| Length = 61220071
Score = 87.7 bits (44), Expect = 2e-14
Identities = 113/136 (83%)
Strand = Plus / Minus
Query: 408 aagaaagtggttcttgatggcgaggaagtccagatagatattctggacacggctggccag 467
||||| ||||| || || || ||||| || ||||| || || ||||||||||| ||||||
Sbjct: 59920246 aagaaggtggtgctggacggggaggaggtgcagatcgacatcctggacacggcgggccag 59920187
Query: 468 gaggactacgcagccattcgagacaactacttccgaagtggggagggtttcctcctcgtg 527
||||||||||| ||||| |||||||||||||||| || || ||||| |||||| |||
Sbjct: 59920186 gaggactacgcggccatcagagacaactacttccgcagcggcgagggcttcctctgcgtc 59920127
Query: 528 ttctcaatcacagagc 543
||||| ||||| ||||
Sbjct: 59920126 ttctccatcacggagc 59920111
Score = 77.8 bits (39), Expect = 2e-11
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 251 gatggctgccaacaagagtaagagccagagctccttggcccttcacaaggtgatcatggt 310
||||||||| |||||| ||| |||||| ||||||||| | |||||||| ||||||||
Sbjct: 59921688 gatggctgcaaacaagcccaagggccagaattccttggccttgcacaaggtcatcatggt 59921629
Query: 311 cggcagtggcggggtcggcaagtcggcactgacgctccagttcatgtacga 361
||||| ||||| || |||||||| || ||||| || ||||||||||||||
Sbjct: 59921628 gggcagcggcggcgtgggcaagtccgctctgactctgcagttcatgtacga 59921578
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,301,014
Number of extensions: 298
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 8
Length of query: 1610
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1588
Effective length of database: 2,808,408,574
Effective search space: 4459752815512
Effective search space used: 4459752815512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)