Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012900
(1072 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068625.2| acyl-CoA thioesterase 8 [Bos taurus]. 562 e-160
Alignment gi|XP_002692390.1| PREDICTED: hypothetical protein [Bos taurus]. 70 2e-12
Alignment gi|XP_002701182.1| PREDICTED: hypothetical protein [Bos taurus]. 70 2e-12
>ref|NP_001068625.2| acyl-CoA thioesterase 8 [Bos taurus].
Length = 317
Score = 562 bits (1449), Expect = e-160
Identities = 271/310 (87%), Positives = 285/310 (91%)
Frame = +2
Query: 134 MSSTEPPEDRQSGDDPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQ 313
MS + PED Q G DPPGDLRSVLVTSVLNLE LD+DLFRG HYWVPST+RLFGGQIVGQ
Sbjct: 1 MSPPQDPEDEQGGGDPPGDLRSVLVTSVLNLEPLDEDLFRGTHYWVPSTERLFGGQIVGQ 60
Query: 314 ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIF 493
ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVR VKAVQHG PIF
Sbjct: 61 ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRFVKAVQHGRPIF 120
Query: 494 ICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQE 673
ICQASFQ+AQPSP+QHQFSMP VP PEE++ E I Q+LRDP LQE+YRVGLNRIAAQE
Sbjct: 121 ICQASFQKAQPSPVQHQFSMPAVPPPEEVVGREDFIGQFLRDPELQERYRVGLNRIAAQE 180
Query: 674 VPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP 853
VPIEIKVVNP T SQL+ MEPKQMFWVRARGYIGEGDMKMHCCVAAYISD+AFLGTA+LP
Sbjct: 181 VPIEIKVVNPSTPSQLKKMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDFAFLGTAMLP 240
Query: 854 HQRQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLAVSC 1033
H ++KV FMVSLDHSMWFHAPFRADHWMLYECESPWAGGSR LVHGRLWRQDGVLAVSC
Sbjct: 241 HHWKYKVGFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLAVSC 300
Query: 1034 AQEGVIRVKP 1063
AQEGVIRVKP
Sbjct: 301 AQEGVIRVKP 310
>ref|XP_002692390.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 72
Score = 70.5 bits (171), Expect = 2e-12
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -1
Query: 262 MPSSEEVLVQELEIEHAGDQDTAEVPGWIVAALSVLGRLRGRHVV 128
M SS+E+LVQ LE+EHAGDQD AEVPGWI AAL V LRGRHVV
Sbjct: 1 MRSSKEILVQRLEVEHAGDQDAAEVPGWIAAALFVFRVLRGRHVV 45
>ref|XP_002701182.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 72
Score = 70.5 bits (171), Expect = 2e-12
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -1
Query: 262 MPSSEEVLVQELEIEHAGDQDTAEVPGWIVAALSVLGRLRGRHVV 128
M SS+E+LVQ LE+EHAGDQD AEVPGWI AAL V LRGRHVV
Sbjct: 1 MRSSKEILVQRLEVEHAGDQDAAEVPGWIAAALFVFRVLRGRHVV 45
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,935,222
Number of extensions: 1503884
Number of successful extensions: 7775
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7677
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012900
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012900
(1072 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534440.1| PREDICTED: similar to Peroxisomal acyl-coenzyme... 578 e-165
Alignment gi|XP_866441.1| PREDICTED: similar to peroxisomal acyl-CoA thio... 384 e-106
>ref|XP_534440.1| PREDICTED: similar to Peroxisomal acyl-coenzyme A thioester hydrolase
1 (Peroxisomal long-chain acyl-coA thioesterase 1)
(HIV-Nef associated acyl coA thioesterase) (Thioesterase
II) (hTE) (hACTEIII) (hACTE-III) (PTE-2) isoform 1 [Canis
familiaris].
Length = 317
Score = 578 bits (1491), Expect = e-165
Identities = 279/310 (90%), Positives = 289/310 (93%)
Frame = +2
Query: 134 MSSTEPPEDRQSGDDPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQ 313
M+S + PED Q G DP GDLRSVLVTSVLNLE LD DLFRGRHYWVP+T+RLFGGQIVGQ
Sbjct: 1 MASRQAPEDEQGGGDPSGDLRSVLVTSVLNLEPLDVDLFRGRHYWVPTTKRLFGGQIVGQ 60
Query: 314 ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIF 493
ALVAAAKSVSED HVHSLHCYFVRTGDPKVPVLYQVERTRTG SFSVRSVKAVQHG PIF
Sbjct: 61 ALVAAAKSVSEDFHVHSLHCYFVRTGDPKVPVLYQVERTRTGTSFSVRSVKAVQHGKPIF 120
Query: 494 ICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQE 673
ICQASFQQ QPSP QHQFSMP VP PE+LL HEALI+QYLRDPNLQEKYRVGLNRIAA+E
Sbjct: 121 ICQASFQQTQPSPAQHQFSMPNVPPPEQLLDHEALIDQYLRDPNLQEKYRVGLNRIAAKE 180
Query: 674 VPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP 853
VPIEIK VNPPTLSQL+SMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP
Sbjct: 181 VPIEIKPVNPPTLSQLQSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP 240
Query: 854 HQRQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLAVSC 1033
HQ Q+KVHFMVSLDHSMWFH PFRADHWMLYECESPWAGGSR LV GRLWR+DGVLAVSC
Sbjct: 241 HQWQYKVHFMVSLDHSMWFHTPFRADHWMLYECESPWAGGSRGLVQGRLWRRDGVLAVSC 300
Query: 1034 AQEGVIRVKP 1063
AQEGVIRVKP
Sbjct: 301 AQEGVIRVKP 310
>ref|XP_866441.1| PREDICTED: similar to peroxisomal acyl-CoA thioesterase isoform c
isoform 2 [Canis familiaris].
Length = 252
Score = 384 bits (985), Expect = e-106
Identities = 189/214 (88%), Positives = 197/214 (92%)
Frame = +2
Query: 134 MSSTEPPEDRQSGDDPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQ 313
M+S + PED Q G DP GDLRSVLVTSVLNLE LD DLFRGRHYWVP+T+RLFGGQIVGQ
Sbjct: 1 MASRQAPEDEQGGGDPSGDLRSVLVTSVLNLEPLDVDLFRGRHYWVPTTKRLFGGQIVGQ 60
Query: 314 ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIF 493
ALVAAAKSVSED HVHSLHCYFVRTGDPKVPVLYQVERTRTG SFSVRSVKAVQHG PIF
Sbjct: 61 ALVAAAKSVSEDFHVHSLHCYFVRTGDPKVPVLYQVERTRTGTSFSVRSVKAVQHGKPIF 120
Query: 494 ICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQE 673
ICQASFQQ QPSP QHQFSMP VP PE+LL HEALI+QYLRDPNLQEKYRVGLNRIAA+E
Sbjct: 121 ICQASFQQTQPSPAQHQFSMPNVPPPEQLLDHEALIDQYLRDPNLQEKYRVGLNRIAAKE 180
Query: 674 VPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIG 775
VPIEIK VNPPTLSQL+SMEPKQMFWVRARGYIG
Sbjct: 181 VPIEIKPVNPPTLSQLQSMEPKQMFWVRARGYIG 214
Score = 63.2 bits (152), Expect = 4e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +2
Query: 962 WAGGSRALVHGRLWRQDGVLAVSCAQEGVIRVKP 1063
+ GGSR LV GRLWR+DGVLAVSCAQEGVIRVKP
Sbjct: 212 YIGGSRGLVQGRLWRRDGVLAVSCAQEGVIRVKP 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,809,562
Number of extensions: 1543066
Number of successful extensions: 8004
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7905
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012900
(1072 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928924.1| PREDICTED: acyl-coenzyme A thioesterase 8 [S... 640 0.0
>ref|XP_001928924.1| PREDICTED: acyl-coenzyme A thioesterase 8 [Sus scrofa].
Length = 317
Score = 640 bits (1652), Expect = 0.0
Identities = 310/311 (99%), Positives = 311/311 (100%)
Frame = +2
Query: 134 MSSTEPPEDRQSGDDPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQ 313
MSSTEPPEDRQSGDDPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQ
Sbjct: 1 MSSTEPPEDRQSGDDPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQ 60
Query: 314 ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIF 493
ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIF
Sbjct: 61 ALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIF 120
Query: 494 ICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQE 673
ICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQE
Sbjct: 121 ICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQE 180
Query: 674 VPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP 853
VPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP
Sbjct: 181 VPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLP 240
Query: 854 HQRQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLAVSC 1033
HQRQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLAVSC
Sbjct: 241 HQRQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLAVSC 300
Query: 1034 AQEGVIRVKPR 1066
AQEGVIRVKP+
Sbjct: 301 AQEGVIRVKPK 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,729,190
Number of extensions: 975921
Number of successful extensions: 5318
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5188
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012900
(1072 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_573503.2| acyl-coenzyme A thioesterase 8 [Mus musculus]. 547 e-156
>ref|NP_573503.2| acyl-coenzyme A thioesterase 8 [Mus musculus].
Length = 320
Score = 547 bits (1409), Expect = e-156
Identities = 259/297 (87%), Positives = 282/297 (94%)
Frame = +2
Query: 176 DPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQIVGQALVAAAKSVSEDVH 355
D GDLRSVLVTSVLNLE LD+DL+RGRHYWVP++QRLFGGQI+GQALVAAAKSVSEDVH
Sbjct: 18 DLSGDLRSVLVTSVLNLEPLDEDLYRGRHYWVPTSQRLFGGQIMGQALVAAAKSVSEDVH 77
Query: 356 VHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGLPIFICQASFQQAQPSPL 535
VHSLHCYFVR GDPKVPVLY VER RTGASFSVR+VKAVQHG IFICQASFQQ QPSPL
Sbjct: 78 VHSLHCYFVRAGDPKVPVLYHVERIRTGASFSVRAVKAVQHGKAIFICQASFQQMQPSPL 137
Query: 536 QHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIAAQEVPIEIKVVNPPTLS 715
QHQFSMP+VP PE+LL HEALI+QYLRDPNL +KYRVGLNR+AAQEVPIEIKVVNPPTL+
Sbjct: 138 QHQFSMPSVPPPEDLLDHEALIDQYLRDPNLHKKYRVGLNRVAAQEVPIEIKVVNPPTLT 197
Query: 716 QLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLPHQRQHKVHFMVSLD 895
QL+++EPKQMFWVRARGYIGEGD+KMHCCVAAYISDYAFLGTALLPHQ ++KV+FM SLD
Sbjct: 198 QLQALEPKQMFWVRARGYIGEGDIKMHCCVAAYISDYAFLGTALLPHQSKYKVNFMASLD 257
Query: 896 HSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLAVSCAQEGVIRVKPR 1066
HSMWFHAPFRADHWMLYECESPWAGGSR LVHGRLWR+DGVLAV+CAQEGVIR+KP+
Sbjct: 258 HSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRRDGVLAVTCAQEGVIRLKPQ 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,345,475
Number of extensions: 1234892
Number of successful extensions: 6017
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5938
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012900
(1072 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005460.2| acyl-coenzyme A thioesterase 8 [Homo sapiens]. 561 e-160
>ref|NP_005460.2| acyl-coenzyme A thioesterase 8 [Homo sapiens].
Length = 319
Score = 561 bits (1446), Expect = e-160
Identities = 276/314 (87%), Positives = 291/314 (92%), Gaps = 3/314 (0%)
Frame = +2
Query: 134 MSSTEPPEDRQS-GD--DPPGDLRSVLVTSVLNLELLDQDLFRGRHYWVPSTQRLFGGQI 304
MSS + PED Q GD DPPGDLRSVLVT+VLNLE LD+DLFRGRHYWVP+ +RLFGGQI
Sbjct: 1 MSSPQAPEDGQGCGDRGDPPGDLRSVLVTTVLNLEPLDEDLFRGRHYWVPA-KRLFGGQI 59
Query: 305 VGQALVAAAKSVSEDVHVHSLHCYFVRTGDPKVPVLYQVERTRTGASFSVRSVKAVQHGL 484
VGQALVAAAKSVSEDVHVHSLHCYFVR GDPK+PVLYQVERTRTG+SFSVRSVKAVQHG
Sbjct: 60 VGQALVAAAKSVSEDVHVHSLHCYFVRAGDPKLPVLYQVERTRTGSSFSVRSVKAVQHGK 119
Query: 485 PIFICQASFQQAQPSPLQHQFSMPTVPLPEELLSHEALIEQYLRDPNLQEKYRVGLNRIA 664
PIFICQASFQQAQPSP+QHQFSMPTVP PEELL E LI+QYLRDPNLQ++Y + LNRIA
Sbjct: 120 PIFICQASFQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDPNLQKRYPLALNRIA 179
Query: 665 AQEVPIEIKVVNPPTLSQLRSMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTA 844
AQEVPIEIK VNP LSQL+ MEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTA
Sbjct: 180 AQEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTA 239
Query: 845 LLPHQRQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRALVHGRLWRQDGVLA 1024
LLPHQ QHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSR LVHGRLWRQDGVLA
Sbjct: 240 LLPHQWQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLA 299
Query: 1025 VSCAQEGVIRVKPR 1066
V+CAQEGVIRVKP+
Sbjct: 300 VTCAQEGVIRVKPQ 313
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,789,733
Number of extensions: 1505570
Number of successful extensions: 7604
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7506
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012900
(1072 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 472 e-130
>Sscrofa_Chr17
|| Length = 69701581
Score = 472 bits (238), Expect = e-130
Identities = 245/246 (99%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 8 atcccgctttcc-agggccggccggatacttccggttatttagctttttgccggaggctg 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53700415 atcccgctttcccagggccggccggatacttccggttatttagctttttgccggaggctg 53700356
Query: 67 cgcattttacctaatctccgtgtgagcagctcggggcagagtccttggcgagctgtaact 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53700355 cgcattttacctaatctccgtgtgagcagctcggggcagagtccttggcgagctgtaact 53700296
Query: 127 gaactacatgtcgtccacggagcctcccgaggacagacagagcggcgacgatccacccgg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53700295 gaactacatgtcgtccacggagcctcccgaggacagacagagcggcgacgatccacccgg 53700236
Query: 187 ggacctccgcagtgtcctggtcaccagcgtgctcaatctcgagctcttggaccaggacct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53700235 ggacctccgcagtgtcctggtcaccagcgtgctcaatctcgagctcttggaccaggacct 53700176
Query: 247 cttcag 252
||||||
Sbjct: 53700175 cttcag 53700170
Score = 456 bits (230), Expect = e-125
Identities = 230/230 (100%)
Strand = Plus / Minus
Query: 387 caggggacccgaaggtgccggtgctgtaccaggtggagcggacgcggacaggggcgagct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53691293 caggggacccgaaggtgccggtgctgtaccaggtggagcggacgcggacaggggcgagct 53691234
Query: 447 tctctgtgcgctccgtgaaggccgtgcagcatggcctgcccatctttatctgccaggcct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53691233 tctctgtgcgctccgtgaaggccgtgcagcatggcctgcccatctttatctgccaggcct 53691174
Query: 507 ccttccagcaggcccagcccagcccccttcagcaccagttctccatgcccaccgtgcccc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53691173 ccttccagcaggcccagcccagcccccttcagcaccagttctccatgcccaccgtgcccc 53691114
Query: 567 tgcccgaggagctgctgagccacgaggccctcattgaacagtatttaagg 616
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53691113 tgcccgaggagctgctgagccacgaggccctcattgaacagtatttaagg 53691064
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 773 ggggagggcgacatgaagatgcactgctgcgtggctgcctatatctcggactacgccttc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53687868 ggggagggcgacatgaagatgcactgctgcgtggctgcctatatctcggactacgccttc 53687809
Query: 833 ctgggcacagcgctgctgccccaccagaggcagcacaaggtgcacttcatggtctccttg 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53687808 ctgggcacagcgctgctgccccaccagaggcagcacaaggtgcacttcatggtctccttg 53687749
Query: 893 gaccactccatgtggttccacgcccctttccgagcggaccactggatgctctatgagtgt 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53687748 gaccactccatgtggttccacgcccctttccgagcggaccactggatgctctatgagtgt 53687689
Query: 953 gagagcccctgggctggtg 971
|||||||||||||||||||
Sbjct: 53687688 gagagcccctgggctggtg 53687670
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 614 agggaccctaacctccaagagaagtaccgagtggggctgaaccgaattgctgcccaggag 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53688524 agggaccctaacctccaagagaagtaccgagtggggctgaaccgaattgctgcccaggag 53688465
Query: 674 gtgcccattgagatcaaggtggtcaacccacccaccctgagccagctgcggagcatggaa 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53688464 gtgcccattgagatcaaggtggtcaacccacccaccctgagccagctgcggagcatggaa 53688405
Query: 734 ccaaaacagatgttctgggtgcgagcccgggggtacattgg 774
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 53688404 ccaaaacagatgttctgggtgcgagcccgggggtacattgg 53688364
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 250 cagaggaaggcattactgggtaccctcaacccagcggctgtttgggggtcagattgtagg 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53698648 cagaggaaggcattactgggtaccctcaacccagcggctgtttgggggtcagattgtagg 53698589
Query: 310 ccaggccctggtggctgcagccaagtctgtgagcgaagatgttcacgtgcactccctgca 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53698588 ccaggccctggtggctgcagccaagtctgtgagcgaagatgttcacgtgcactccctgca 53698529
Query: 370 ctgctactttgttcggacagg 390
|||||||||||||||||||||
Sbjct: 53698528 ctgctactttgttcggacagg 53698508
Score = 194 bits (98), Expect = 7e-47
Identities = 105/106 (99%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 968 ggtggttcccgggccctggttcatgggcggctgtggcgtcaggacggggtcctggctgtg 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53685939 ggtggttcccgggccctggttcatgggcggctgtggcgtcaggacggggtcctggctgtg 53685880
Query: 1028 tcctgtgcccaggagggcgtgatccgagtgaagccc-aggtttcaa 1072
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 53685879 tcctgtgcccaggagggcgtgatccgagtgaagcccaaggtttcaa 53685834
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,188,502
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 6
Length of query: 1072
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1051
Effective length of database: 2,808,413,156
Effective search space: 2951642226956
Effective search space used: 2951642226956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)