Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012902
(1067 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029162.2| non-specific lipid-transfer protein [Bos tau... 301 6e-82
Alignment gi|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [B... 78 1e-14
Alignment gi|NP_001035597.1| hypothetical protein LOC505971 [Bos taurus]. 65 8e-11
Alignment gi|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 ... 61 2e-09
>ref|NP_001029162.2| non-specific lipid-transfer protein [Bos taurus].
Length = 543
Score = 301 bits (771), Expect = 6e-82
Identities = 147/180 (81%), Positives = 159/180 (88%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST 181
C ELCW LRGEAGKRQVPGAKVALQHN+G+GGA VVTLY+MGFPEAAR+ Q+EA PTSS+
Sbjct: 364 CVELCWHLRGEAGKRQVPGAKVALQHNIGIGGAVVVTLYKMGFPEAARTHQIEAAPTSSS 423
Query: 182 LDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP 361
+DGFKANLVFK QFVKKIGGIFAFKVKDGP G+EATWVVDVKNGKG+VLP
Sbjct: 424 VDGFKANLVFKEIEKKLEDEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLP 483
Query: 362 NSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 541
NSDKKADCTITM+DSDL+ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP KAKL
Sbjct: 484 NSDKKADCTITMADSDLLALMTGKMNPQTAFFQGKLKINGNMGLAMKLQNLQLQPGKAKL 543
>ref|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [Bos taurus].
Length = 736
Score = 78.2 bits (191), Expect = 1e-14
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Frame = +2
Query: 92 GGAAVVTLYRMGFPEAARSPQVEAVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGG 271
GG + Y P +A S + T S G ++ LVF+ + VKK+
Sbjct: 594 GGIVISNAYVDLVPASAISAK-----TPSEGAGLQSTLVFEEIGRRLQGIGEEVVKKVRA 648
Query: 272 IFAFKVKDGPEGREATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQL 448
+F + + G E A W +D+K G G V K AD TIT+SD D + +++GK++PQ
Sbjct: 649 VFEWHITKG-ENTAAKWTIDLKTGSGKVYQGPAKGSADVTITLSDEDFMEVVLGKLDPQK 707
Query: 449 AFFQGKLKVLGNMGLAMKLQ 508
A F G+LK GN+ L+ KLQ
Sbjct: 708 AVFSGRLKARGNILLSQKLQ 727
>ref|NP_001035597.1| hypothetical protein LOC505971 [Bos taurus].
Length = 156
Score = 65.5 bits (158), Expect = 8e-11
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +2
Query: 161 AVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGREATWVVDVK 337
AVP +L F+ VF+ Q VKK+ IF + KDG + W +D+K
Sbjct: 32 AVPHPLSLSEFQTVPVFEDISQHVKEVGSQLVKKVNAIFQLDITKDGKTVHQ--WTIDLK 89
Query: 338 NGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNL 514
NG G + AD T+ + + L++GKMNPQ AF GK KV G + L KL+ +
Sbjct: 90 NGSGDTYRGPARLPADTVFTIPEPVFMELILGKMNPQKAFLAGKFKVSGKVLLGQKLERV 149
>ref|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 [Bos taurus].
Length = 418
Score = 60.8 bits (146), Expect = 2e-09
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 VKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAV-LPNSDKKADCTITMSDSDLVALMMG 430
VK ++ F++ G +G TW +D+K+ G + +AD ++MS D V + G
Sbjct: 326 VKATQAVYQFELS-GEDG--GTWFLDLKSKGGNIGYGEPSDQADVVMSMSTDDFVKMFSG 382
Query: 431 KMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQ 523
K+ P +AF GKLK+ GNM LA+KL+ L Q
Sbjct: 383 KLKPTMAFMSGKLKIKGNMALAIKLEKLMNQ 413
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,606,958
Number of extensions: 893561
Number of successful extensions: 2110
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2105
Number of HSP's successfully gapped: 4
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012902
(1067 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866084.1| PREDICTED: similar to sterol carrier protein 2 ... 306 2e-83
Alignment gi|XP_866132.1| PREDICTED: similar to sterol carrier protein 2 ... 301 5e-82
Alignment gi|XP_852690.1| PREDICTED: similar to sterol carrier protein 2 ... 301 7e-82
Alignment gi|XP_866148.1| PREDICTED: similar to sterol carrier protein 2 ... 301 7e-82
Alignment gi|XP_866097.1| PREDICTED: similar to sterol carrier protein 2 ... 253 3e-67
Alignment gi|XP_859341.1| PREDICTED: similar to Peroxisomal multifunction... 72 9e-13
Alignment gi|XP_859266.1| PREDICTED: similar to Peroxisomal multifunction... 72 9e-13
Alignment gi|XP_531860.2| PREDICTED: similar to Peroxisomal multifunction... 72 9e-13
Alignment gi|XP_542873.2| PREDICTED: similar to Protein C20orf79 [Canis f... 71 2e-12
Alignment gi|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 ... 62 1e-09
>ref|XP_866084.1| PREDICTED: similar to sterol carrier protein 2 isoform 1 proprotein
isoform 3 [Canis familiaris].
Length = 540
Score = 306 bits (785), Expect = 2e-83
Identities = 150/180 (83%), Positives = 162/180 (90%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST 181
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAAR+ Q+EAVPTSS
Sbjct: 361 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAARTHQIEAVPTSSA 420
Query: 182 LDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP 361
+DGFKANLVFK +FVKKIGGIFAFKVK+GPEG+EATWVVDVKNGKG+VLP
Sbjct: 421 VDGFKANLVFKEIEKKLEEEGEEFVKKIGGIFAFKVKNGPEGKEATWVVDVKNGKGSVLP 480
Query: 362 NSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 541
NSDKKADCTITM+DSDL+ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP KAKL
Sbjct: 481 NSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGKAKL 540
>ref|XP_866132.1| PREDICTED: similar to sterol carrier protein 2 isoform 1 proprotein
isoform 5 [Canis familiaris].
Length = 541
Score = 301 bits (772), Expect = 5e-82
Identities = 150/181 (82%), Positives = 161/181 (88%), Gaps = 1/181 (0%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAAR-SPQVEAVPTSS 178
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAAR S +EAVPTSS
Sbjct: 361 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAARPSSNIEAVPTSS 420
Query: 179 TLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVL 358
+DGFKANLVFK +FVKKIGGIFAFKVK+GPEG+EATWVVDVKNGKG+VL
Sbjct: 421 AVDGFKANLVFKEIEKKLEEEGEEFVKKIGGIFAFKVKNGPEGKEATWVVDVKNGKGSVL 480
Query: 359 PNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAK 538
PNSDKKADCTITM+DSDL+ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP KAK
Sbjct: 481 PNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGKAK 540
Query: 539 L 541
L
Sbjct: 541 L 541
>ref|XP_852690.1| PREDICTED: similar to sterol carrier protein 2 isoform 1 proprotein
isoform 2 [Canis familiaris].
Length = 543
Score = 301 bits (771), Expect = 7e-82
Identities = 150/183 (81%), Positives = 162/183 (88%), Gaps = 3/183 (1%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAA---RSPQVEAVPT 172
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAA R+ Q+EAVPT
Sbjct: 361 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASKNRTHQIEAVPT 420
Query: 173 SSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGA 352
SS +DGFKANLVFK +FVKKIGGIFAFKVK+GPEG+EATWVVDVKNGKG+
Sbjct: 421 SSAVDGFKANLVFKEIEKKLEEEGEEFVKKIGGIFAFKVKNGPEGKEATWVVDVKNGKGS 480
Query: 353 VLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSK 532
VLPNSDKKADCTITM+DSDL+ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP K
Sbjct: 481 VLPNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGK 540
Query: 533 AKL 541
AKL
Sbjct: 541 AKL 543
>ref|XP_866148.1| PREDICTED: similar to sterol carrier protein 2 isoform 1 proprotein
isoform 6 [Canis familiaris].
Length = 540
Score = 301 bits (771), Expect = 7e-82
Identities = 148/180 (82%), Positives = 159/180 (88%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST 181
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAA +EAVPTSS
Sbjct: 361 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASQNGIEAVPTSSA 420
Query: 182 LDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP 361
+DGFKANLVFK +FVKKIGGIFAFKVK+GPEG+EATWVVDVKNGKG+VLP
Sbjct: 421 VDGFKANLVFKEIEKKLEEEGEEFVKKIGGIFAFKVKNGPEGKEATWVVDVKNGKGSVLP 480
Query: 362 NSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 541
NSDKKADCTITM+DSDL+ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP KAKL
Sbjct: 481 NSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGKAKL 540
>ref|XP_866097.1| PREDICTED: similar to sterol carrier protein 2 isoform 1 proprotein
isoform 4 [Canis familiaris].
Length = 1015
Score = 253 bits (645), Expect = 3e-67
Identities = 122/148 (82%), Positives = 133/148 (89%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST 181
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAAR+ Q+EAVPTSS
Sbjct: 361 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAARTHQIEAVPTSSA 420
Query: 182 LDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP 361
+DGFKANLVFK +FVKKIGGIFAFKVK+GPEG+EATWVVDVKNGKG+VLP
Sbjct: 421 VDGFKANLVFKEIEKKLEEEGEEFVKKIGGIFAFKVKNGPEGKEATWVVDVKNGKGSVLP 480
Query: 362 NSDKKADCTITMSDSDLVALMMGKMNPQ 445
NSDKKADCTITM+DSDL+ALM GKMNPQ
Sbjct: 481 NSDKKADCTITMADSDLLALMTGKMNPQ 508
>ref|XP_859341.1| PREDICTED: similar to Peroxisomal multifunctional enzyme type 2
(MFE-2) (D-bifunctional protein) (DBP)
(17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4)
isoform 5 [Canis familiaris].
Length = 739
Score = 72.0 bits (175), Expect = 9e-13
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Frame = +2
Query: 155 VEAVPTSSTL-------DGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGRE 313
V+ +PTS T ++ LVF+ + KK+ +F + + G
Sbjct: 606 VDLMPTSDTSAQTPSEGGELQSTLVFEEIGRRLKDIGHEVAKKVNAVFEWHITKGGN-IA 664
Query: 314 ATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMG 490
A W +D+K+G G V K AD T T+SD D + +++GK++PQ AFF G+LK GN+
Sbjct: 665 AKWTIDLKSGFGKVYQGPAKGPADATFTLSDEDFMDVVLGKLDPQKAFFSGRLKARGNIM 724
Query: 491 LAMKLQ 508
L+ KLQ
Sbjct: 725 LSQKLQ 730
>ref|XP_859266.1| PREDICTED: similar to Peroxisomal multifunctional enzyme type 2
(MFE-2) (D-bifunctional protein) (DBP)
(17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4)
isoform 3 [Canis familiaris].
Length = 599
Score = 72.0 bits (175), Expect = 9e-13
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Frame = +2
Query: 155 VEAVPTSSTL-------DGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGRE 313
V+ +PTS T ++ LVF+ + KK+ +F + + G
Sbjct: 466 VDLMPTSDTSAQTPSEGGELQSTLVFEEIGRRLKDIGHEVAKKVNAVFEWHITKGGN-IA 524
Query: 314 ATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMG 490
A W +D+K+G G V K AD T T+SD D + +++GK++PQ AFF G+LK GN+
Sbjct: 525 AKWTIDLKSGFGKVYQGPAKGPADATFTLSDEDFMDVVLGKLDPQKAFFSGRLKARGNIM 584
Query: 491 LAMKLQ 508
L+ KLQ
Sbjct: 585 LSQKLQ 590
>ref|XP_531860.2| PREDICTED: similar to Peroxisomal multifunctional enzyme type 2
(MFE-2) (D-bifunctional protein) (DBP)
(17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4)
isoform 2 [Canis familiaris].
Length = 737
Score = 72.0 bits (175), Expect = 9e-13
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Frame = +2
Query: 155 VEAVPTSSTL-------DGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGRE 313
V+ +PTS T ++ LVF+ + KK+ +F + + G
Sbjct: 604 VDLMPTSDTSAQTPSEGGELQSTLVFEEIGRRLKDIGHEVAKKVNAVFEWHITKGGN-IA 662
Query: 314 ATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMG 490
A W +D+K+G G V K AD T T+SD D + +++GK++PQ AFF G+LK GN+
Sbjct: 663 AKWTIDLKSGFGKVYQGPAKGPADATFTLSDEDFMDVVLGKLDPQKAFFSGRLKARGNIM 722
Query: 491 LAMKLQ 508
L+ KLQ
Sbjct: 723 LSQKLQ 728
>ref|XP_542873.2| PREDICTED: similar to Protein C20orf79 [Canis familiaris].
Length = 257
Score = 71.2 bits (173), Expect = 2e-12
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Frame = +2
Query: 137 AARSPQVEAVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGRE 313
AAR P AVP L F++ VF+ Q VKK+ IF + KDG +
Sbjct: 128 AAREP---AVPHPLELSEFQSFPVFEDISHHIKEVGAQLVKKVNAIFQLDITKDGKIILQ 184
Query: 314 ATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMG 490
W +D+KNG G + P S + AD T+ + + L++GKMNPQ AF GK KV G +
Sbjct: 185 --WTIDLKNGSGDMYPGSARLPADTVFTIPEPVFMELVLGKMNPQKAFLAGKFKVSGKVL 242
Query: 491 LAMKLQNL 514
L KL+ +
Sbjct: 243 LGQKLERV 250
>ref|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 [Canis lupus
familiaris].
Length = 418
Score = 61.6 bits (148), Expect = 1e-09
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 VKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAV-LPNSDKKADCTITMSDSDLVALMMG 430
VK ++ F++ G +G TW +D+K+ G V +AD ++MS D V + G
Sbjct: 326 VKATQAVYQFELS-GEDG--GTWFLDLKSKGGNVGYGEPSNQADVVMSMSTDDFVKMFSG 382
Query: 431 KMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQ 523
K+ P +AF GKLK+ GNM LA+KL+ L Q
Sbjct: 383 KLKPTMAFMSGKLKIKGNMALAIKLEKLMNQ 413
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,231,583
Number of extensions: 919766
Number of successful extensions: 2233
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2226
Number of HSP's successfully gapped: 16
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012902
(1067 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161887.1| non-specific lipid-transfer protein [Sus scr... 334 4e-92
Alignment gi|XP_003356513.1| PREDICTED: non-specific lipid-transfer prote... 197 1e-50
Alignment gi|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus ... 80 3e-15
Alignment gi|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 ... 61 9e-10
Alignment gi|XP_001928425.1| PREDICTED: stomatin-like protein 1 isoform 1... 50 2e-06
>ref|NP_001161887.1| non-specific lipid-transfer protein [Sus scrofa].
Length = 541
Score = 334 bits (857), Expect = 4e-92
Identities = 169/180 (93%), Positives = 169/180 (93%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST 181
CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST
Sbjct: 362 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAARSPQVEAVPTSST 421
Query: 182 LDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP 361
LDGFKANLVFK QFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP
Sbjct: 422 LDGFKANLVFKEIEKRLEEEGEQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLP 481
Query: 362 NSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 541
NSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL
Sbjct: 482 NSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 541
>ref|XP_003356513.1| PREDICTED: non-specific lipid-transfer protein-like, partial [Sus
scrofa].
Length = 142
Score = 197 bits (500), Expect = 1e-50
Identities = 98/98 (100%), Positives = 98/98 (100%)
Frame = +2
Query: 248 QFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLPNSDKKADCTITMSDSDLVALMM 427
QFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLPNSDKKADCTITMSDSDLVALMM
Sbjct: 45 QFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLPNSDKKADCTITMSDSDLVALMM 104
Query: 428 GKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 541
GKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL
Sbjct: 105 GKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSKAKL 142
>ref|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus scrofa].
Length = 737
Score = 79.7 bits (195), Expect = 3e-15
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Frame = +2
Query: 155 VEAVPTSSTL-------DGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGRE 313
V+ VPTS TL ++NLVF+ + VKK+ +F + + G E
Sbjct: 604 VDLVPTSDTLAKIPSEGGDLQSNLVFEEIGRRLQDIGQEMVKKVNAVFEWHITKG-EKIA 662
Query: 314 ATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMG 490
A W +D+KNG G V K AD T +SD + +++GK++PQ AFF G+LK GN+
Sbjct: 663 AKWTIDLKNGAGKVYQGPAKGSADATFILSDEVFMEVVLGKLDPQKAFFSGRLKARGNIM 722
Query: 491 LAMKLQ 508
L+ KLQ
Sbjct: 723 LSQKLQ 728
>ref|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 [Sus scrofa].
Length = 418
Score = 61.2 bits (147), Expect = 9e-10
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 VKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAV-LPNSDKKADCTITMSDSDLVALMMG 430
VK I+ F++ G +G TW +D+K+ G V +AD ++MS D V + G
Sbjct: 326 VKATQAIYQFELS-GEDG--GTWFLDLKSKGGNVGYGEPSDRADVVMSMSTDDFVKMFSG 382
Query: 431 KMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQ 523
K+ P +AF GKLK+ GNM LA+KL+ L Q
Sbjct: 383 KLKPVVAFLSGKLKIKGNMALAIKLEKLMNQ 413
>ref|XP_001928425.1| PREDICTED: stomatin-like protein 1 isoform 1 [Sus scrofa].
Length = 398
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 VKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLPNS-DKKADCTITMSDSDLVALMMG 430
V ++G + F V P G ++ + +D+ G+G V + D D + MS+ DL AL+
Sbjct: 307 VSQVGACYQFNVIL-PGGTQSIYFLDLTTGQGRVGHGAPDGIPDVVVEMSEEDLQALLCR 365
Query: 431 KMNPQLAFFQGKLKVLGNMGLAMKLQ 508
++ P A+ G+LKV G++ +AMKL+
Sbjct: 366 ELRPLGAYMSGRLKVKGDLSVAMKLE 391
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,527,247
Number of extensions: 569763
Number of successful extensions: 1404
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 5
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012902
(1067 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035457.1| non-specific lipid-transfer protein [Mus muscul... 298 4e-81
Alignment gi|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus ... 68 1e-11
Alignment gi|NP_079766.3| hypothetical protein LOC66328 [Mus musculus]. 65 9e-11
Alignment gi|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mu... 59 8e-09
>ref|NP_035457.1| non-specific lipid-transfer protein [Mus musculus].
Length = 547
Score = 298 bits (764), Expect = 4e-81
Identities = 152/183 (83%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAA---RSPQVEAVPT 172
CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGA VVTLYRMGFPEAA R+ QV A PT
Sbjct: 365 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAVVVTLYRMGFPEAASSFRTHQVSAAPT 424
Query: 173 SSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGA 352
SS DGFKANLVFK QFVKKIGGIFAFKVKDGP G+EATWVVDVKNGKG+
Sbjct: 425 SSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 484
Query: 353 VLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSK 532
VLPNSDKKADCTITM+DSDL+ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP K
Sbjct: 485 VLPNSDKKADCTITMADSDLLALMTGKMNPQSAFFQGKLKIAGNMGLAMKLQNLQLQPGK 544
Query: 533 AKL 541
AKL
Sbjct: 545 AKL 547
>ref|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus musculus].
Length = 735
Score = 68.2 bits (165), Expect = 1e-11
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Frame = +2
Query: 164 VPTSSTLDG--FKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVK 337
V T + +G ++ LVF + VKK +F + + G A W +D+K
Sbjct: 610 VSTQTPSEGGELQSALVFGEIGRRLKSVGREVVKKANAVFEWHITKGGTVA-AKWTIDLK 668
Query: 338 NGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQ 508
+G G V K AD TI +SD D + ++ GK++PQ AFF G+LK GN+ L+ KLQ
Sbjct: 669 SGSGEVYQGPAKGSADVTIIISDEDFMEVVFGKLDPQKAFFSGRLKARGNIMLSQKLQ 726
>ref|NP_079766.3| hypothetical protein LOC66328 [Mus musculus].
Length = 156
Score = 65.1 bits (157), Expect = 9e-11
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Frame = +2
Query: 137 AARSPQVEAVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGRE 313
A S A+P + L F+ VF+ Q VKK+ IF + KDG +
Sbjct: 24 ALGSATESALPQALKLSDFQNFSVFEDISQHIKEVGAQLVKKVNAIFQLDITKDGKTILQ 83
Query: 314 ATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMG 490
W +D+KNG G + S + AD + DS L++GK+NPQ AF GK KV G +
Sbjct: 84 --WTIDLKNGAGDMYLGSARLPADTVFIIPDSVFTELVVGKINPQKAFLAGKFKVRGKVL 141
Query: 491 LAMKLQNL 514
L+ KL+ +
Sbjct: 142 LSQKLERI 149
>ref|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mus musculus].
Length = 490
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +2
Query: 248 QFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALM 424
+ V+ ++ F++ G +G TW +D+K+ G V +AD ++M+ D V +
Sbjct: 396 EVVRATQAVYQFELS-GEDG--GTWFLDLKSKGGKVGHGEPSDRADVVMSMATDDFVKMF 452
Query: 425 MGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQ 523
GK+ P +AF GKLK+ GN+ LA+KL+ L Q
Sbjct: 453 SGKLKPTMAFMSGKLKIKGNIALAIKLEKLMTQ 485
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,110,396
Number of extensions: 778391
Number of successful extensions: 1916
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1907
Number of HSP's successfully gapped: 4
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012902
(1067 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180546.1| non-specific lipid-transfer protein isoform ... 297 1e-80
Alignment gi|NP_001180529.1| non-specific lipid-transfer protein isoform ... 297 1e-80
Alignment gi|NP_001180528.1| non-specific lipid-transfer protein isoform ... 297 1e-80
Alignment gi|NP_002970.2| non-specific lipid-transfer protein isoform 1 p... 297 1e-80
Alignment gi|NP_001007101.1| non-specific lipid-transfer protein isoform ... 224 1e-58
Alignment gi|NP_001007100.1| non-specific lipid-transfer protein isoform ... 219 4e-57
Alignment gi|NP_001186221.1| peroxisomal multifunctional enzyme type 2 is... 72 7e-13
Alignment gi|NP_000405.1| peroxisomal multifunctional enzyme type 2 isofo... 72 7e-13
Alignment gi|NP_001186220.1| peroxisomal multifunctional enzyme type 2 is... 72 7e-13
Alignment gi|NP_848578.1| hypothetical protein LOC140856 [Homo sapiens]. 66 6e-11
>ref|NP_001180546.1| non-specific lipid-transfer protein isoform 8 proprotein [Homo
sapiens].
Length = 466
Score = 297 bits (760), Expect = 1e-80
Identities = 149/183 (81%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAA---RSPQVEAVPT 172
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAA R+ Q+EAVPT
Sbjct: 284 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPT 343
Query: 173 SSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGA 352
SS DGFKANLVFK QFVKKIGGIFAFKVKDGP G+EATWVVDVKNGKG+
Sbjct: 344 SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 403
Query: 353 VLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSK 532
VLPNSDKKADCTITM+DSD +ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP
Sbjct: 404 VLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGN 463
Query: 533 AKL 541
AKL
Sbjct: 464 AKL 466
>ref|NP_001180529.1| non-specific lipid-transfer protein isoform 6 proprotein [Homo
sapiens].
Length = 503
Score = 297 bits (760), Expect = 1e-80
Identities = 149/183 (81%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAA---RSPQVEAVPT 172
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAA R+ Q+EAVPT
Sbjct: 321 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPT 380
Query: 173 SSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGA 352
SS DGFKANLVFK QFVKKIGGIFAFKVKDGP G+EATWVVDVKNGKG+
Sbjct: 381 SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 440
Query: 353 VLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSK 532
VLPNSDKKADCTITM+DSD +ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP
Sbjct: 441 VLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGN 500
Query: 533 AKL 541
AKL
Sbjct: 501 AKL 503
>ref|NP_001180528.1| non-specific lipid-transfer protein isoform 7 proprotein [Homo
sapiens].
Length = 523
Score = 297 bits (760), Expect = 1e-80
Identities = 149/183 (81%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAA---RSPQVEAVPT 172
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAA R+ Q+EAVPT
Sbjct: 341 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPT 400
Query: 173 SSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGA 352
SS DGFKANLVFK QFVKKIGGIFAFKVKDGP G+EATWVVDVKNGKG+
Sbjct: 401 SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 460
Query: 353 VLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSK 532
VLPNSDKKADCTITM+DSD +ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP
Sbjct: 461 VLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGN 520
Query: 533 AKL 541
AKL
Sbjct: 521 AKL 523
>ref|NP_002970.2| non-specific lipid-transfer protein isoform 1 proprotein [Homo
sapiens].
Length = 547
Score = 297 bits (760), Expect = 1e-80
Identities = 149/183 (81%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Frame = +2
Query: 2 CAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGFPEAA---RSPQVEAVPT 172
CAELCWQLRGEAGKRQVPGAKVALQHNLG+GGA VVTLY+MGFPEAA R+ Q+EAVPT
Sbjct: 365 CAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPT 424
Query: 173 SSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGPEGREATWVVDVKNGKGA 352
SS DGFKANLVFK QFVKKIGGIFAFKVKDGP G+EATWVVDVKNGKG+
Sbjct: 425 SSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS 484
Query: 353 VLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNLQLQPSK 532
VLPNSDKKADCTITM+DSD +ALM GKMNPQ AFFQGKLK+ GNMGLAMKLQNLQLQP
Sbjct: 485 VLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQLQPGN 544
Query: 533 AKL 541
AKL
Sbjct: 545 AKL 547
>ref|NP_001007101.1| non-specific lipid-transfer protein isoform 4 proprotein [Homo
sapiens].
Length = 140
Score = 224 bits (571), Expect = 1e-58
Identities = 112/140 (80%), Positives = 119/140 (85%)
Frame = +2
Query: 122 MGFPEAARSPQVEAVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVKDGP 301
MGFPEAAR+ Q+EAVPTSS DGFKANLVFK QFVKKIGGIFAFKVKDGP
Sbjct: 1 MGFPEAARTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGP 60
Query: 302 EGREATWVVDVKNGKGAVLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLG 481
G+EATWVVDVKNGKG+VLPNSDKKADCTITM+DSD +ALM GKMNPQ AFFQGKLK+ G
Sbjct: 61 GGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITG 120
Query: 482 NMGLAMKLQNLQLQPSKAKL 541
NMGLAMKLQNLQLQP AKL
Sbjct: 121 NMGLAMKLQNLQLQPGNAKL 140
>ref|NP_001007100.1| non-specific lipid-transfer protein isoform 5 proprotein [Homo
sapiens].
Length = 143
Score = 219 bits (557), Expect = 4e-57
Identities = 112/143 (78%), Positives = 119/143 (83%), Gaps = 3/143 (2%)
Frame = +2
Query: 122 MGFPEAA---RSPQVEAVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKVK 292
MGFPEAA R+ Q+EAVPTSS DGFKANLVFK QFVKKIGGIFAFKVK
Sbjct: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 60
Query: 293 DGPEGREATWVVDVKNGKGAVLPNSDKKADCTITMSDSDLVALMMGKMNPQLAFFQGKLK 472
DGP G+EATWVVDVKNGKG+VLPNSDKKADCTITM+DSD +ALM GKMNPQ AFFQGKLK
Sbjct: 61 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 120
Query: 473 VLGNMGLAMKLQNLQLQPSKAKL 541
+ GNMGLAMKLQNLQLQP AKL
Sbjct: 121 ITGNMGLAMKLQNLQLQPGNAKL 143
>ref|NP_001186221.1| peroxisomal multifunctional enzyme type 2 isoform 3 [Homo sapiens].
Length = 718
Score = 72.4 bits (176), Expect = 7e-13
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Frame = +2
Query: 155 VEAVPTSSTL-----DGFK--ANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGR 310
V+ PTS T +G K + VF+ + VKK+ +F + + K G G
Sbjct: 585 VDLAPTSGTSAKTPSEGGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIG- 643
Query: 311 EATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNM 487
A W +D+K+G G V K AD TI +SD D + +++GK++PQ AFF G+LK GN+
Sbjct: 644 -AKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNI 702
Query: 488 GLAMKLQ 508
L+ KLQ
Sbjct: 703 MLSQKLQ 709
>ref|NP_000405.1| peroxisomal multifunctional enzyme type 2 isoform 2 [Homo sapiens].
Length = 736
Score = 72.4 bits (176), Expect = 7e-13
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Frame = +2
Query: 155 VEAVPTSSTL-----DGFK--ANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGR 310
V+ PTS T +G K + VF+ + VKK+ +F + + K G G
Sbjct: 603 VDLAPTSGTSAKTPSEGGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIG- 661
Query: 311 EATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNM 487
A W +D+K+G G V K AD TI +SD D + +++GK++PQ AFF G+LK GN+
Sbjct: 662 -AKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNI 720
Query: 488 GLAMKLQ 508
L+ KLQ
Sbjct: 721 MLSQKLQ 727
>ref|NP_001186220.1| peroxisomal multifunctional enzyme type 2 isoform 1 [Homo sapiens].
Length = 761
Score = 72.4 bits (176), Expect = 7e-13
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Frame = +2
Query: 155 VEAVPTSSTL-----DGFK--ANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGR 310
V+ PTS T +G K + VF+ + VKK+ +F + + K G G
Sbjct: 628 VDLAPTSGTSAKTPSEGGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIG- 686
Query: 311 EATWVVDVKNGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNM 487
A W +D+K+G G V K AD TI +SD D + +++GK++PQ AFF G+LK GN+
Sbjct: 687 -AKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNI 745
Query: 488 GLAMKLQ 508
L+ KLQ
Sbjct: 746 MLSQKLQ 752
>ref|NP_848578.1| hypothetical protein LOC140856 [Homo sapiens].
Length = 156
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Frame = +2
Query: 161 AVPTSSTLDGFKANLVFKXXXXXXXXXXXQFVKKIGGIFAFKV-KDGPEGREATWVVDVK 337
A+P L F++ VF+ Q VKK+ +F + K+G W +D+K
Sbjct: 32 AMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDITKNGKT--ILRWTIDLK 89
Query: 338 NGKGAVLPNSDK-KADCTITMSDSDLVALMMGKMNPQLAFFQGKLKVLGNMGLAMKLQNL 514
NG G + P + AD T+ +S + L++GKMNPQ AF GK KV G + L+ KL+ +
Sbjct: 90 NGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLSWKLERV 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,571,872
Number of extensions: 911974
Number of successful extensions: 2209
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2200
Number of HSP's successfully gapped: 14
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012902
(1067 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1162 0.0
gb|GL892794.2| Sus scrofa unplaced genomic scaffold ChrUScaf679 285 2e-74
>Sscrofa_Chr06
|| Length = 157765593
Score = 1162 bits (586), Expect = 0.0
Identities = 586/586 (100%)
Strand = Plus / Minus
Query: 448 ggccttctttcaaggcaaattgaaagtccttggcaacatgggtctggctatgaagttaca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903379 ggccttctttcaaggcaaattgaaagtccttggcaacatgggtctggctatgaagttaca 146903320
Query: 508 gaatcttcagcttcagcccagcaaagctaagctgtgaagaactccctttgcctacctttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903319 gaatcttcagcttcagcccagcaaagctaagctgtgaagaactccctttgcctacctttg 146903260
Query: 568 aaaatcaagatgagatatacaaatatatagatgcgtatatttcactgtcagaacctagac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903259 aaaatcaagatgagatatacaaatatatagatgcgtatatttcactgtcagaacctagac 146903200
Query: 628 tgaaaattcacattggcaaatagcatgagattagtttttaaatgggtgtgaccaatcctg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903199 tgaaaattcacattggcaaatagcatgagattagtttttaaatgggtgtgaccaatcctg 146903140
Query: 688 tttttcctacgggctgggtaaatagaacctgatggtatactactgctttgcaaaattgcc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903139 tttttcctacgggctgggtaaatagaacctgatggtatactactgctttgcaaaattgcc 146903080
Query: 748 tacaaatgtgcattacaaagttaatgtggtaattatggtttagggtacaattgagtttta 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903079 tacaaatgtgcattacaaagttaatgtggtaattatggtttagggtacaattgagtttta 146903020
Query: 808 gaataaaattaggaacagcaaaatccaaaaactatgtaaacaacagttctcattttgctt 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146903019 gaataaaattaggaacagcaaaatccaaaaactatgtaaacaacagttctcattttgctt 146902960
Query: 868 ataaagtatgtttgaggattattctgctgaagagtcaatttaagttttccttgggaggcc 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146902959 ataaagtatgtttgaggattattctgctgaagagtcaatttaagttttccttgggaggcc 146902900
Query: 928 gagggaagagaacgaacaccagtagtggaacagtaattaatattgtgcactaatgacctt 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146902899 gagggaagagaacgaacaccagtagtggaacagtaattaatattgtgcactaatgacctt 146902840
Query: 988 catctattttcactgagaatttttaaaattctgtactggaatgttt 1033
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146902839 catctattttcactgagaatttttaaaattctgtactggaatgttt 146902794
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1 gtgcgccgaactctgctggcagctgagaggggaagccgggaagaggcaagttcctggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146936737 gtgcgccgaactctgctggcagctgagaggggaagccgggaagaggcaagttcctggtgc 146936678
Query: 61 aaaggttgctctgcagcataatttgggccttggaggagctgcggttgtcacgctgtacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146936677 aaaggttgctctgcagcataatttgggccttggaggagctgcggttgtcacgctgtacag 146936618
Query: 121 gatgggttttcctgaagctgccag 144
||||||||||||||||||||||||
Sbjct: 146936617 gatgggttttcctgaagctgccag 146936594
Score = 254 bits (128), Expect = 9e-65
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 237 aggaaggggagcagtttgtaaagaagattggtggtattttcgccttcaaggtgaaggatg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146914048 aggaaggggagcagtttgtaaagaagattggtggtattttcgccttcaaggtgaaggatg 146913989
Query: 297 gccccgagggcagagaagccacctgggtggtggacgtgaagaatggcaaaggagccgtgc 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 146913988 gccccgagggcagagaagccacctgggtggtagacgtgaagaatggcaaaggagccgtgc 146913929
Query: 357 tccctaactcag 368
||||||||||||
Sbjct: 146913928 tccctaactcag 146913917
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 143 agatctccccaagttgaggctgttccaaccagctctacacttgacggatttaaggcaaat 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146923009 agatctccccaagttgaggctgttccaaccagctctacacttgacggatttaaggcaaat 146922950
Query: 203 cttgtctttaaggagattgagaagaggcttgaagagg 239
|||||||||||||||||||||||||||||||||||||
Sbjct: 146922949 cttgtctttaaggagattgagaagaggcttgaagagg 146922913
Score = 145 bits (73), Expect = 6e-32
Identities = 82/85 (96%)
Strand = Plus / Minus
Query: 365 tcagataagaaagccgactgcacaataacgatgtccgactcagacttagtggctttgatg 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 146906519 tcagataagaaagccgactgcacaatcacgatgtccgactcagacttagtggctttgatg 146906460
Query: 425 atgggtaaaatgaatcctcagttgg 449
| ||||||||||||||||||||||
Sbjct: 146906459 actggtaaaatgaatcctcagttgg 146906435
>gb|GL892794.2| Sus scrofa unplaced genomic scaffold ChrUScaf679
Length = 47728
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1 gtgcgccgaactctgctggcagctgagaggggaagccgggaagaggcaagttcctggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19709 gtgcgccgaactctgctggcagctgagaggggaagccgggaagaggcaagttcctggtgc 19650
Query: 61 aaaggttgctctgcagcataatttgggccttggaggagctgcggttgtcacgctgtacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19649 aaaggttgctctgcagcataatttgggccttggaggagctgcggttgtcacgctgtacag 19590
Query: 121 gatgggttttcctgaagctgccag 144
||||||||||||||||||||||||
Sbjct: 19589 gatgggttttcctgaagctgccag 19566
Score = 232 bits (117), Expect = 3e-58
Identities = 131/135 (97%), Gaps = 3/135 (2%)
Strand = Plus / Minus
Query: 237 aggaaggggagcagtttgtaaagaagattggtggtattttcgccttcaaggtgaaggatg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4735 aggaaggggagcagtttgtaaagaagattggtggtattttcgccttcaaggtgaaggatg 4676
Query: 297 gccccgagggcagagaag---ccacctgggtggtggacgtgaagaatggcaaaggagccg 353
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 4675 gccccgagggcagagaagccnccacctgggtggtagacgtgaagaatggcaaaggagccg 4616
Query: 354 tgctccctaactcag 368
|||||||||||||||
Sbjct: 4615 tgctccctaactcag 4601
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,684,088
Number of extensions: 285
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 7
Length of query: 1067
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1046
Effective length of database: 2,808,413,156
Effective search space: 2937600161176
Effective search space used: 2937600161176
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)