Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012903
(1692 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073246.1| sorting nexin-3 [Bos taurus]. 318 1e-86
Alignment gi|NP_001096727.1| sorting nexin-12 [Bos taurus]. 268 8e-72
Alignment gi|NP_001070372.1| sorting nexin-11 [Bos taurus]. 76 1e-13
Alignment gi|NP_001157409.1| sorting nexin 7 [Bos taurus]. 74 5e-13
Alignment gi|NP_001193667.1| sorting nexin family member 30 [Bos taurus]. 72 2e-12
Alignment gi|NP_001033608.1| sorting nexin-2 [Bos taurus]. 72 2e-12
Alignment gi|NP_001039572.2| sorting nexin-1 [Bos taurus]. 71 3e-12
Alignment gi|NP_001068843.1| sorting nexin-10 [Bos taurus]. 68 2e-11
Alignment gi|NP_001073750.1| sorting nexin-4 [Bos taurus]. 52 1e-06
>ref|NP_001073246.1| sorting nexin-3 [Bos taurus].
Length = 162
Score = 318 bits (814), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV
Sbjct: 8 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 67
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN
Sbjct: 68 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 127
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 809
KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 128 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
>ref|NP_001096727.1| sorting nexin-12 [Bos taurus].
Length = 162
Score = 268 bits (686), Expect = 8e-72
Identities = 123/153 (80%), Positives = 143/153 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 803
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>ref|NP_001070372.1| sorting nexin-11 [Bos taurus].
Length = 270
Score = 75.9 bits (185), Expect = 1e-13
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGS----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|NP_001157409.1| sorting nexin 7 [Bos taurus].
Length = 451
Score = 73.6 bits (179), Expect = 5e-13
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 393 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 572
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 91 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKLEE 150
Query: 573 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 749
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 151 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 205
Query: 750 MFL 758
+FL
Sbjct: 206 IFL 208
>ref|NP_001193667.1| sorting nexin family member 30 [Bos taurus].
Length = 437
Score = 71.6 bits (174), Expect = 2e-12
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Frame = +3
Query: 375 LNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL 554
L+D + L + V +P+ + TY I K+ F L E +VRRRY DF+WL
Sbjct: 80 LDDDMDGETRDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWL 139
Query: 555 RSELERESKV-VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQ 731
R++LE ++PPLP K ++ + R F + F+E R++ L++F+ ++ HP+
Sbjct: 140 RNKLEESQPTHLIPPLPEKFVVKGVVDR-----FSEEFVETRRKALDKFLKRITDHPVLS 194
Query: 732 NERCLHMFL 758
++FL
Sbjct: 195 FNEHFNVFL 203
>ref|NP_001033608.1| sorting nexin-2 [Bos taurus].
Length = 519
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 578
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 756 LQDEIIDKS 782
L+ + ++
Sbjct: 262 LESSELPRA 270
>ref|NP_001039572.2| sorting nexin-1 [Bos taurus].
Length = 522
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/129 (27%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>ref|NP_001068843.1| sorting nexin-10 [Bos taurus].
Length = 200
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +3
Query: 459 FTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVV-VPPLPGKAFLRQLPFR 635
+ YEI + TN F +K S VRRRY +F WLR L+ + +V +P LP K + R
Sbjct: 29 YIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNR 88
Query: 636 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEI 770
+++R+QGLE F+ KV + L ++ LH+FLQ +
Sbjct: 89 --------QHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHL 125
>ref|NP_001073750.1| sorting nexin-4 [Bos taurus].
Length = 450
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 528 RRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRYS+FE LR+ L +VVPPLP K D + D +F+E R+ GLE F+
Sbjct: 105 RRYSEFELLRNYLLVYYPHIVVPPLPEKRAEFVWHKLSADNM-DPDFVERRRIGLENFLL 163
Query: 705 KVAGHPLAQNERCLHMFLQDE 767
+VA HP+ ++ ++FL E
Sbjct: 164 RVASHPILCRDKIFYLFLTQE 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,386,318
Number of extensions: 1253584
Number of successful extensions: 3041
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3018
Number of HSP's successfully gapped: 9
Length of query: 564
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 457
Effective length of database: 14,140,958
Effective search space: 6462417806
Effective search space used: 6462417806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012903
(1692 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855006.1| PREDICTED: similar to sorting nexin 3 [Canis fa... 312 5e-85
Alignment gi|XP_848727.1| PREDICTED: similar to sorting nexin 12 isoform ... 268 9e-72
Alignment gi|XP_856993.1| PREDICTED: similar to Sorting nexin-12 (SDP8 pr... 163 5e-40
Alignment gi|XP_856951.1| PREDICTED: similar to Sorting nexin-12 (SDP8 pr... 140 4e-33
Alignment gi|XP_856869.1| PREDICTED: similar to Sorting nexin-12 (SDP8 pr... 88 3e-17
Alignment gi|XP_537664.2| PREDICTED: similar to Sorting nexin-11 [Canis f... 76 1e-13
Alignment gi|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis fa... 74 6e-13
Alignment gi|XP_532496.2| PREDICTED: similar to Sorting nexin-10 [Canis f... 72 1e-12
Alignment gi|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c... 72 2e-12
Alignment gi|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1... 72 2e-12
>ref|XP_855006.1| PREDICTED: similar to sorting nexin 3 [Canis familiaris].
Length = 162
Score = 312 bits (800), Expect = 5e-85
Identities = 152/155 (98%), Positives = 153/155 (98%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRLITKPQNLNDAYGPPSNFLE+DVSNPQTVG RGRFTTYEIRVKTNLPIFKLKESTV
Sbjct: 8 TRRLITKPQNLNDAYGPPSNFLEMDVSNPQTVGFARGRFTTYEIRVKTNLPIFKLKESTV 67
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN
Sbjct: 68 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 127
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 809
KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 128 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
>ref|XP_848727.1| PREDICTED: similar to sorting nexin 12 isoform 1 [Canis
familiaris].
Length = 162
Score = 268 bits (686), Expect = 9e-72
Identities = 123/153 (80%), Positives = 143/153 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 803
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>ref|XP_856993.1| PREDICTED: similar to Sorting nexin-12 (SDP8 protein) isoform 4
[Canis familiaris].
Length = 124
Score = 163 bits (412), Expect = 5e-40
Identities = 76/96 (79%), Positives = 86/96 (89%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPF 632
RRRYSDFEWL++ELER+SK+VVPPLPGKA PF
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKLSAPF 104
>ref|XP_856951.1| PREDICTED: similar to Sorting nexin-12 (SDP8 protein) isoform 3
[Canis familiaris].
Length = 109
Score = 140 bits (353), Expect = 4e-33
Identities = 65/79 (82%), Positives = 74/79 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESK 581
RRRYSDFEWL++ELER+SK
Sbjct: 69 RRRYSDFEWLKNELERDSK 87
>ref|XP_856869.1| PREDICTED: similar to Sorting nexin-12 (SDP8 protein) isoform 2
[Canis familiaris].
Length = 63
Score = 87.8 bits (216), Expect = 3e-17
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKL 509
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++T P + L
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTRGPEYSL 63
>ref|XP_537664.2| PREDICTED: similar to Sorting nexin-11 [Canis familiaris].
Length = 212
Score = 75.9 bits (185), Expect = 1e-13
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGS----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis familiaris].
Length = 458
Score = 73.6 bits (179), Expect = 6e-13
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 393 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 572
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 95 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE 154
Query: 573 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 749
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 155 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 209
Query: 750 MFL 758
+FL
Sbjct: 210 VFL 212
>ref|XP_532496.2| PREDICTED: similar to Sorting nexin-10 [Canis familiaris].
Length = 201
Score = 72.4 bits (176), Expect = 1e-12
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = +3
Query: 459 FTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVV-VPPLPGKAFLRQLPFR 635
+ YEI + TN F +K S VRRRY +F WLR L+ + +V +P LP K + R
Sbjct: 29 YIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQNNALLVQLPELPSKNLFFNMNNR 88
Query: 636 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEI 770
+++R+QGLE F+ KV + L ++ CLH+FLQ +
Sbjct: 89 --------QHVDQRRQGLEDFLRKVLQNALLLSDSCLHLFLQSHL 125
>ref|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c isoform 2 [Canis
familiaris].
Length = 473
Score = 72.0 bits (175), Expect = 2e-12
Identities = 35/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++
Sbjct: 144 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 203
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 204 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 263
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 264 LEKEELPRA 272
>ref|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1 [Canis familiaris].
Length = 521
Score = 72.0 bits (175), Expect = 2e-12
Identities = 35/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++
Sbjct: 144 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 203
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 204 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 263
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 264 LEKEELPRA 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,592,229
Number of extensions: 1105712
Number of successful extensions: 3451
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3411
Number of HSP's successfully gapped: 15
Length of query: 564
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 456
Effective length of database: 15,274,216
Effective search space: 6965042496
Effective search space used: 6965042496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012903
(1692 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928105.1| PREDICTED: sorting nexin-12 [Sus scrofa]. 268 5e-72
Alignment gi|XP_003131585.1| PREDICTED: sorting nexin-11-like isoform 2 [... 76 6e-14
Alignment gi|XP_003131584.1| PREDICTED: sorting nexin-11-like isoform 1 [... 76 6e-14
Alignment gi|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa]. 74 3e-13
Alignment gi|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa]. 74 3e-13
Alignment gi|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Su... 72 7e-13
Alignment gi|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus sc... 72 7e-13
Alignment gi|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus sc... 72 7e-13
Alignment gi|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa]. 72 1e-12
Alignment gi|XP_003134896.1| PREDICTED: sorting nexin-10-like isoform 1 [... 68 1e-11
>ref|XP_001928105.1| PREDICTED: sorting nexin-12 [Sus scrofa].
Length = 162
Score = 268 bits (686), Expect = 5e-72
Identities = 123/153 (80%), Positives = 143/153 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 803
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>ref|XP_003131585.1| PREDICTED: sorting nexin-11-like isoform 2 [Sus scrofa].
Length = 270
Score = 75.9 bits (185), Expect = 6e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGS----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|XP_003131584.1| PREDICTED: sorting nexin-11-like isoform 1 [Sus scrofa].
Length = 270
Score = 75.9 bits (185), Expect = 6e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGS----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa].
Length = 446
Score = 73.6 bits (179), Expect = 3e-13
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 393 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 572
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 84 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKLEE 143
Query: 573 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 749
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 144 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 198
Query: 750 MFL 758
+FL
Sbjct: 199 VFL 201
>ref|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa].
Length = 583
Score = 73.6 bits (179), Expect = 3e-13
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 393 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 572
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 217 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKLEE 276
Query: 573 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 749
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 277 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 331
Query: 750 MFL 758
+FL
Sbjct: 332 VFL 334
>ref|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Sus scrofa].
Length = 379
Score = 72.4 bits (176), Expect = 7e-13
Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ +V+RR+SDF L SE ++
Sbjct: 92 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQN 151
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 152 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREF 211
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 212 LEKEELPRA 220
>ref|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus scrofa].
Length = 474
Score = 72.4 bits (176), Expect = 7e-13
Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ +V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQN 204
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREF 264
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>ref|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus scrofa].
Length = 522
Score = 72.4 bits (176), Expect = 7e-13
Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ +V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQN 204
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREF 264
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>ref|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa].
Length = 559
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 578
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 182 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 241
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 242 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 301
Query: 756 LQDEIIDKS 782
L+ + ++
Sbjct: 302 LESSELPRA 310
>ref|XP_003134896.1| PREDICTED: sorting nexin-10-like isoform 1 [Sus scrofa].
Length = 200
Score = 68.2 bits (165), Expect = 1e-11
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +3
Query: 459 FTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVV-VPPLPGKAFLRQLPFR 635
+ YEI + TN F +K S VRRRY +F WLR L+ + +V +P LP K + R
Sbjct: 29 YIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNR 88
Query: 636 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEI 770
+++R+QGLE F+ KV + L ++ LH+FLQ +
Sbjct: 89 --------QHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHL 125
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,143,283
Number of extensions: 1078026
Number of successful extensions: 1969
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 12
Length of query: 564
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 460
Effective length of database: 8,754,644
Effective search space: 4027136240
Effective search space used: 4027136240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012903
(1692 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059500.2| sorting nexin-3 [Mus musculus]. 318 1e-86
Alignment gi|NP_001103780.1| sorting nexin-12 isoform 1 [Mus musculus]. 268 7e-72
Alignment gi|NP_001103781.1| sorting nexin-12 isoform 2 [Mus musculus]. 266 3e-71
Alignment gi|NP_061363.2| sorting nexin-12 isoform 3 [Mus musculus]. 266 3e-71
Alignment gi|NP_001156861.1| sorting nexin-11 [Mus musculus]. 76 9e-14
Alignment gi|NP_083241.1| sorting nexin-11 [Mus musculus]. 76 9e-14
Alignment gi|NP_001177085.1| sorting nexin-7 isoform 2 [Mus musculus]. 75 2e-13
Alignment gi|NP_083931.2| sorting nexin-7 isoform 1 [Mus musculus]. 75 2e-13
Alignment gi|NP_080662.1| sorting nexin-2 [Mus musculus]. 72 2e-12
Alignment gi|NP_766056.1| sorting nexin-30 [Mus musculus]. 72 2e-12
>ref|NP_059500.2| sorting nexin-3 [Mus musculus].
Length = 162
Score = 318 bits (814), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV
Sbjct: 8 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 67
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN
Sbjct: 68 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 127
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 809
KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 128 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
>ref|NP_001103780.1| sorting nexin-12 isoform 1 [Mus musculus].
Length = 162
Score = 268 bits (686), Expect = 7e-72
Identities = 123/153 (80%), Positives = 143/153 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 803
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>ref|NP_001103781.1| sorting nexin-12 isoform 2 [Mus musculus].
Length = 170
Score = 266 bits (681), Expect = 3e-71
Identities = 122/152 (80%), Positives = 142/152 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKI 800
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKV 160
>ref|NP_061363.2| sorting nexin-12 isoform 3 [Mus musculus].
Length = 166
Score = 266 bits (681), Expect = 3e-71
Identities = 122/152 (80%), Positives = 142/152 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKI 800
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKV 160
>ref|NP_001156861.1| sorting nexin-11 [Mus musculus].
Length = 271
Score = 75.9 bits (185), Expect = 9e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKSTF----FGG-----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|NP_083241.1| sorting nexin-11 [Mus musculus].
Length = 271
Score = 75.9 bits (185), Expect = 9e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKSTF----FGG-----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|NP_001177085.1| sorting nexin-7 isoform 2 [Mus musculus].
Length = 394
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 390 GPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELE 569
GP L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 84 GPDLKDLFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLE 143
Query: 570 R-ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCL 746
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 144 EAHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDF 198
Query: 747 HMFL 758
+FL
Sbjct: 199 KVFL 202
>ref|NP_083931.2| sorting nexin-7 isoform 1 [Mus musculus].
Length = 445
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 390 GPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELE 569
GP L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 84 GPDLKDLFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLE 143
Query: 570 R-ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCL 746
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 144 EAHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDF 198
Query: 747 HMFL 758
+FL
Sbjct: 199 KVFL 202
>ref|NP_080662.1| sorting nexin-2 [Mus musculus].
Length = 519
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 578
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 756 LQDEIIDKS 782
L+ + ++
Sbjct: 262 LESSELPRA 270
>ref|NP_766056.1| sorting nexin-30 [Mus musculus].
Length = 437
Score = 71.6 bits (174), Expect = 2e-12
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Frame = +3
Query: 375 LNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL 554
L+D + L + V +P+ + TY I K+ F L E +VRRRY DF+WL
Sbjct: 80 LDDDIDGEARDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWL 139
Query: 555 RSELERESKV-VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQ 731
R++LE ++PPLP K ++ + R F + F+E R++ L++F+ ++ HP+
Sbjct: 140 RNKLEESQPTHLIPPLPEKFVVKGVVDR-----FSEEFVETRRKALDKFLKRITDHPVLS 194
Query: 732 NERCLHMFL 758
++FL
Sbjct: 195 FNEHFNVFL 203
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,041,424
Number of extensions: 921417
Number of successful extensions: 2553
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2515
Number of HSP's successfully gapped: 15
Length of query: 564
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 457
Effective length of database: 12,403,707
Effective search space: 5668494099
Effective search space used: 5668494099
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012903
(1692 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003786.1| sorting nexin-3 isoform a [Homo sapiens]. 318 1e-86
Alignment gi|NP_037478.2| sorting nexin-12 [Homo sapiens]. 268 9e-72
Alignment gi|NP_690040.1| sorting nexin-3 isoform b [Homo sapiens]. 238 1e-62
Alignment gi|NP_037455.2| sorting nexin-11 [Homo sapiens]. 75 1e-13
Alignment gi|NP_689450.1| sorting nexin-11 [Homo sapiens]. 75 1e-13
Alignment gi|NP_057060.2| sorting nexin-7 isoform a [Homo sapiens]. 74 5e-13
Alignment gi|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens]. 72 1e-12
Alignment gi|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens]. 72 1e-12
Alignment gi|NP_001013012.1| sorting nexin-30 [Homo sapiens]. 72 2e-12
Alignment gi|NP_003091.2| sorting nexin-2 [Homo sapiens]. 72 2e-12
>ref|NP_003786.1| sorting nexin-3 isoform a [Homo sapiens].
Length = 162
Score = 318 bits (814), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV
Sbjct: 8 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 67
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN
Sbjct: 68 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 127
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 809
KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 128 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
>ref|NP_037478.2| sorting nexin-12 [Homo sapiens].
Length = 162
Score = 268 bits (686), Expect = 9e-72
Identities = 123/153 (80%), Positives = 143/153 (93%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPIFKLKES V
Sbjct: 9 TRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCV 68
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
RRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+QGLEQFIN
Sbjct: 69 RRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFIN 128
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 803
K+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 129 KIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>ref|NP_690040.1| sorting nexin-3 isoform b [Homo sapiens].
Length = 130
Score = 238 bits (607), Expect = 1e-62
Identities = 123/155 (79%), Positives = 123/155 (79%)
Frame = +3
Query: 345 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTV 524
TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK
Sbjct: 8 TRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK------------- 54
Query: 525 RRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 704
VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN
Sbjct: 55 -------------------VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 95
Query: 705 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 809
KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 96 KVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 130
>ref|NP_037455.2| sorting nexin-11 [Homo sapiens].
Length = 270
Score = 75.5 bits (184), Expect = 1e-13
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|NP_689450.1| sorting nexin-11 [Homo sapiens].
Length = 270
Score = 75.5 bits (184), Expect = 1e-13
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 584
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 585 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 761
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 762 DEI 770
++
Sbjct: 128 SQL 130
>ref|NP_057060.2| sorting nexin-7 isoform a [Homo sapiens].
Length = 451
Score = 73.6 bits (179), Expect = 5e-13
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 393 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 572
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 91 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE 150
Query: 573 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 749
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 151 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 205
Query: 750 MFL 758
+FL
Sbjct: 206 IFL 208
>ref|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens].
Length = 557
Score = 72.4 bits (176), Expect = 1e-12
Identities = 35/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>ref|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens].
Length = 522
Score = 72.4 bits (176), Expect = 1e-12
Identities = 35/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 578
L + +++P+ +G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 756 LQDEIIDKS 782
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>ref|NP_001013012.1| sorting nexin-30 [Homo sapiens].
Length = 437
Score = 72.0 bits (175), Expect = 2e-12
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Frame = +3
Query: 375 LNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL 554
L+D + L + V +P+ + TY I K+ F L E +VRRRY DF+WL
Sbjct: 80 LDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWL 139
Query: 555 RSELERESKV-VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQ 731
RS+LE ++PPLP K ++ + R F + F+E R++ L++F+ ++ HP+
Sbjct: 140 RSKLEESQPTHLIPPLPEKFVVKGVVDR-----FSEEFVETRRKALDKFLKRITDHPVLS 194
Query: 732 NERCLHMFL 758
++FL
Sbjct: 195 FNEHFNIFL 203
>ref|NP_003091.2| sorting nexin-2 [Homo sapiens].
Length = 519
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Frame = +3
Query: 408 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 578
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 579 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 755
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 756 LQDEIIDKS 782
L+ + ++
Sbjct: 262 LESSELPRA 270
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,480,917
Number of extensions: 1071157
Number of successful extensions: 2954
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2914
Number of HSP's successfully gapped: 15
Length of query: 564
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 456
Effective length of database: 14,737,052
Effective search space: 6720095712
Effective search space used: 6720095712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012903
(1692 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1166 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1166 bits (588), Expect = 0.0
Identities = 648/678 (95%)
Strand = Plus / Minus
Query: 707 ggtcgctggtcatcctctggcacagaatgaacgttgtcttcacatgtttttacaggatga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577496 ggtcgctggtcatcctctggcacagaatgaacgttgtcttcacatgtttttacaggatga 83577437
Query: 767 aataatagataaaagctatactccatctaaaataagacatgcctgaaattggcaagaagg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577436 aataatagataaaagctatactccatctaaaataagacatgcctgaaattggcaagaagg 83577377
Query: 827 ggcnnnnnnnnctttccatgactattaatgattcatatgcaccagtgaagaagttctaac 886
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577376 ggcaaaaaaaactttccatgactattaatgattcatatgcaccagtgaagaagttctaac 83577317
Query: 887 taactttagcatgctgcacaaaaactggtataacatgccttcagtatactaacactcata 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577316 taactttagcatgctgcacaaaaactggtataacatgccttcagtatactaacactcata 83577257
Query: 947 tgctcannnnnnnnnnnnnnnnnnnnnncagttgacgagaagttaatttgctatagtgaa 1006
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 83577256 tgctcagttttgttttgttttgttttggcagttgacgagaagttaatttgctatagtgaa 83577197
Query: 1007 aaatccctcattccagcctttctatataaatagctcttccttgctgttttaatgtggttc 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577196 aaatccctcattccagcctttctatataaatagctcttccttgctgttttaatgtggttc 83577137
Query: 1067 acgctgtagcttcacaagcctgttactccagtataatctgcagtgtcctaactaaagtta 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577136 acgctgtagcttcacaagcctgttactccagtataatctgcagtgtcctaactaaagtta 83577077
Query: 1127 ctgacttggtcttacctacagtttttgtgtcatgtttgctttttgaatctgattaactag 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577076 ctgacttggtcttacctacagtttttgtgtcatgtttgctttttgaatctgattaactag 83577017
Query: 1187 aatatctctcttatcccctttttaatatgtggtgtcacttgacctaatttatgtgtggaa 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83577016 aatatctctcttatcccctttttaatatgtggtgtcacttgacctaatttatgtgtggaa 83576957
Query: 1247 gcactacgcattggtttcctgtaccctacatgtaagagacacatttgagtgcagaaagta 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83576956 gcactacgcattggtttcctgtaccctacatgtaagagacacatttgagtgcagaaagta 83576897
Query: 1307 tctcccttcaggcttgtaatacccttcacatggaagatcaatgagggaaatctttatatt 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83576896 tctcccttcaggcttgtaatacccttcacatggaagatcaatgagggaaatctttatatt 83576837
Query: 1367 ctgtataaaaacaaaatc 1384
||||||||||||||||||
Sbjct: 83576836 ctgtataaaaacaaaatc 83576819
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 580 aggttgtagttcccccactccctgggaaagcatttttgcgtcaacttccttttagaggag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83579185 aggttgtagttcccccactccctgggaaagcatttttgcgtcaacttccttttagaggag 83579126
Query: 640 atgatggaatatttgatgacaattttattgaagaaaggaagcaagggctggagcagttta 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83579125 atgatggaatatttgatgacaattttattgaagaaaggaagcaagggctggagcagttta 83579066
Query: 700 taaacaag 707
||||||||
Sbjct: 83579065 taaacaag 83579058
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 484 agacaaatctgcctattttcaagctgaaggaatctaccgttagaagaagatacagtgact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83585174 agacaaatctgcctattttcaagctgaaggaatctaccgttagaagaagatacagtgact 83585115
Query: 544 ttgaatggcttcgaagtgaattagaaagagagagcaaggt 583
||||||||||||||||||||||||||||||||||||||||
Sbjct: 83585114 ttgaatggcttcgaagtgaattagaaagagagagcaaggt 83585075
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,401,568
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 5
Length of query: 1692
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1670
Effective length of database: 2,808,408,574
Effective search space: 4690042318580
Effective search space used: 4690042318580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)