Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012907
(965 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686877.1| PREDICTED: ring-box 1-like [Bos taurus]. 246 3e-65
Alignment gi|XP_001249640.2| PREDICTED: ring-box 1-like, partial [Bos tau... 246 3e-65
Alignment gi|XP_001249317.2| PREDICTED: ring-box 1-like [Bos taurus]. 246 3e-65
Alignment gi|NP_001039706.1| RING-box protein 1 [Bos taurus]. 241 5e-64
Alignment gi|NP_001069188.1| RING-box protein 2 [Bos taurus]. 114 1e-25
Alignment gi|NP_001107196.1| anaphase-promoting complex subunit 11 [Bos t... 84 2e-16
Alignment gi|XP_002698989.1| PREDICTED: anaphase promoting complex subuni... 83 4e-16
Alignment gi|XP_871863.2| PREDICTED: anaphase promoting complex subunit 1... 83 4e-16
Alignment gi|XP_002703037.1| PREDICTED: anaphase promoting complex subuni... 56 4e-08
>ref|XP_002686877.1| PREDICTED: ring-box 1-like [Bos taurus].
Length = 131
Score = 246 bits (627), Expect = 3e-65
Identities = 110/112 (98%), Positives = 110/112 (98%)
Frame = +1
Query: 16 CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 195
CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 20 CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 79
Query: 196 QANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
QANQ SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ YGH
Sbjct: 80 QANQESATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQTYGH 131
>ref|XP_001249640.2| PREDICTED: ring-box 1-like, partial [Bos taurus].
Length = 133
Score = 246 bits (627), Expect = 3e-65
Identities = 110/112 (98%), Positives = 110/112 (98%)
Frame = +1
Query: 16 CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 195
CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 22 CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 81
Query: 196 QANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
QANQ SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ YGH
Sbjct: 82 QANQESATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQTYGH 133
>ref|XP_001249317.2| PREDICTED: ring-box 1-like [Bos taurus].
Length = 131
Score = 246 bits (627), Expect = 3e-65
Identities = 110/112 (98%), Positives = 110/112 (98%)
Frame = +1
Query: 16 CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 195
CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC
Sbjct: 20 CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 79
Query: 196 QANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
QANQ SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ YGH
Sbjct: 80 QANQESATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQTYGH 131
>ref|NP_001039706.1| RING-box protein 1 [Bos taurus].
Length = 108
Score = 241 bits (616), Expect = 5e-64
Identities = 108/108 (100%), Positives = 108/108 (100%)
Frame = +1
Query: 28 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 207
MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
Query: 208 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 61 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>ref|NP_001069188.1| RING-box protein 2 [Bos taurus].
Length = 113
Score = 114 bits (285), Expect = 1e-25
Identities = 48/97 (49%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
+G+ SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 AGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|NP_001107196.1| anaphase-promoting complex subunit 11 [Bos taurus].
Length = 84
Score = 84.0 bits (206), Expect = 2e-16
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
R ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLNAQQVQQHCPMCRQEWKFKE 84
>ref|XP_002698989.1| PREDICTED: anaphase promoting complex subunit 11-like [Bos taurus].
Length = 79
Score = 82.8 bits (203), Expect = 4e-16
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 103 KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 282
+WN VA W W +NC ICR C++C+ ++C + WG C+H FH HCI
Sbjct: 2 RWNGVATWLWVANDENCGICRMAFNGCCLDCKV-----PGDDCPLVWGQCSHCFHMHCIL 56
Query: 283 RWLKTRQV---CPLDNREWEFQK 342
+WL +QV CP+ +EW+F++
Sbjct: 57 KWLNAQQVQQHCPMCRQEWKFKE 79
>ref|XP_871863.2| PREDICTED: anaphase promoting complex subunit 11-like [Bos taurus].
Length = 79
Score = 82.8 bits (203), Expect = 4e-16
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 103 KWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 282
+WN VA W W +NC ICR C++C+ ++C + WG C+H FH HCI
Sbjct: 2 RWNGVATWLWVANDENCGICRMAFNGCCLDCKV-----PGDDCPLVWGQCSHCFHMHCIL 56
Query: 283 RWLKTRQV---CPLDNREWEFQK 342
+WL +QV CP+ +EW+F++
Sbjct: 57 KWLNAQQVQQHCPMCRQEWKFKE 79
>ref|XP_002703037.1| PREDICTED: anaphase promoting complex subunit 11-like [Bos taurus].
Length = 57
Score = 56.2 bits (134), Expect = 4e-08
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +1
Query: 184 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQK 342
C +C+ ++C + WG C+H FH HCI +WL +QV CP+ +EW+F++
Sbjct: 7 CPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 57
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,846,926
Number of extensions: 939692
Number of successful extensions: 2672
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2662
Number of HSP's successfully gapped: 9
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012907
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012907
(965 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531722.1| PREDICTED: similar to RING-box protein 1 (Rbx1)... 245 4e-65
Alignment gi|XP_534291.1| PREDICTED: similar to RING-box protein 2 (Rbx2)... 114 1e-25
Alignment gi|XP_540489.1| PREDICTED: similar to anaphase promoting comple... 85 1e-16
>ref|XP_531722.1| PREDICTED: similar to RING-box protein 1 (Rbx1) [Canis familiaris].
Length = 241
Score = 245 bits (626), Expect = 4e-65
Identities = 111/113 (98%), Positives = 111/113 (98%)
Frame = +1
Query: 4 DDRSCVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDL 183
DD CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDL
Sbjct: 93 DDGPCVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDL 152
Query: 184 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 342
CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK
Sbjct: 153 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 205
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +2
Query: 623 AELSCKHVAWSQGSLVHSLVPGGSSGQVTALL 718
AELSC+H+AWS+G LVHSLVP GS GQV +LL
Sbjct: 206 AELSCEHIAWSRGILVHSLVPDGSLGQVISLL 237
>ref|XP_534291.1| PREDICTED: similar to RING-box protein 2 (Rbx2) (RING finger
protein 7) (Sensitive to apoptosis gene protein) [Canis
familiaris].
Length = 113
Score = 114 bits (285), Expect = 1e-25
Identities = 48/97 (49%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
+G+ SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 AGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|XP_540489.1| PREDICTED: similar to anaphase promoting complex subunit 11 homolog
[Canis familiaris].
Length = 94
Score = 84.7 bits (208), Expect = 1e-16
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 73 GAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC 252
G+ + ++K WN VA W W +NC ICR C +C+ ++C + WG C
Sbjct: 7 GSAAMKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQC 61
Query: 253 NHAFHFHCISRWLKTRQV---CPLDNREWEFQK 342
+H FH HCI +WL +QV CP+ +EW+F++
Sbjct: 62 SHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 94
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,221,880
Number of extensions: 959969
Number of successful extensions: 2539
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2531
Number of HSP's successfully gapped: 4
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012907
(965 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358638.1| PREDICTED: RING-box protein 2-like isoform 2... 117 1e-26
Alignment gi|XP_003132499.1| PREDICTED: RING-box protein 2-like isoform 1... 117 1e-26
Alignment gi|XP_003358639.1| PREDICTED: RING-box protein 2-like isoform 3... 92 4e-19
Alignment gi|XP_003360606.1| PREDICTED: anaphase-promoting complex subuni... 79 5e-15
>ref|XP_003358638.1| PREDICTED: RING-box protein 2-like isoform 2 [Sus scrofa].
Length = 113
Score = 117 bits (292), Expect = 1e-26
Identities = 50/97 (51%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SGT SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 SGTKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|XP_003132499.1| PREDICTED: RING-box protein 2-like isoform 1 [Sus scrofa].
Length = 113
Score = 117 bits (292), Expect = 1e-26
Identities = 50/97 (51%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SGT SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 SGTKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|XP_003358639.1| PREDICTED: RING-box protein 2-like isoform 3 [Sus scrofa].
Length = 97
Score = 92.0 bits (227), Expect = 4e-19
Identities = 43/97 (44%), Positives = 54/97 (55%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SGT SG G K F +KKWNAVA+W+WD+ D CAICR +M V
Sbjct: 20 SGTKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVM-------------------V 59
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 60 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 96
>ref|XP_003360606.1| PREDICTED: anaphase-promoting complex subunit 11-like [Sus scrofa].
Length = 156
Score = 78.6 bits (192), Expect = 5e-15
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWE 333
HCI +WL +QV CP+ ++W+
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQDWQ 81
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,021,155
Number of extensions: 602135
Number of successful extensions: 1648
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1643
Number of HSP's successfully gapped: 4
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012907
(965 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086109.1| PREDICTED: e3 ubiquitin-protein ligase RBX1-... 251 6e-67
Alignment gi|XP_001480993.2| PREDICTED: e3 ubiquitin-protein ligase RBX1-... 249 2e-66
Alignment gi|NP_062686.1| E3 ubiquitin-protein ligase RBX1 [Mus musculus]. 241 5e-64
Alignment gi|XP_921660.1| PREDICTED: RING-box protein 2-like [Mus musculu... 114 1e-25
Alignment gi|NP_035409.1| RING-box protein 2 [Mus musculus]. 114 1e-25
Alignment gi|XP_980241.1| PREDICTED: RING-box protein 2-like [Mus musculu... 112 4e-25
Alignment gi|XP_911668.2| PREDICTED: RING-box protein 2-like [Mus musculu... 112 4e-25
Alignment gi|XP_910941.1| PREDICTED: RING-box protein 2-like [Mus musculu... 112 4e-25
Alignment gi|NP_079665.1| anaphase-promoting complex subunit 11 [Mus musc... 83 4e-16
Alignment gi|NP_001033319.1| anaphase-promoting complex subunit 11 [Mus m... 83 4e-16
>ref|XP_003086109.1| PREDICTED: e3 ubiquitin-protein ligase RBX1-like [Mus musculus].
Length = 124
Score = 251 bits (641), Expect = 6e-67
Identities = 113/115 (98%), Positives = 113/115 (98%)
Frame = +1
Query: 7 DRSCVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLC 186
DR CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 10 DRLCVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLC 69
Query: 187 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
IECQANQASATSEECTVAWGVCNHAFHFHCISRWLK RQVCPLDNREWEFQKYGH
Sbjct: 70 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKKRQVCPLDNREWEFQKYGH 124
>ref|XP_001480993.2| PREDICTED: e3 ubiquitin-protein ligase RBX1-like [Mus musculus].
Length = 140
Score = 249 bits (636), Expect = 2e-66
Identities = 112/115 (97%), Positives = 113/115 (98%)
Frame = +1
Query: 7 DRSCVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLC 186
DR CVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAW+IVVDNCAICRNHIMDLC
Sbjct: 26 DRLCVSKMAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWNIVVDNCAICRNHIMDLC 85
Query: 187 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
IECQANQASATSEECTVAWGVCNHAFHFHCISRWLK RQVCPLDNREWEFQKYGH
Sbjct: 86 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKKRQVCPLDNREWEFQKYGH 140
>ref|NP_062686.1| E3 ubiquitin-protein ligase RBX1 [Mus musculus].
Length = 108
Score = 241 bits (616), Expect = 5e-64
Identities = 108/108 (100%), Positives = 108/108 (100%)
Frame = +1
Query: 28 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 207
MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
Query: 208 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 61 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>ref|XP_921660.1| PREDICTED: RING-box protein 2-like [Mus musculus].
Length = 113
Score = 114 bits (285), Expect = 1e-25
Identities = 48/97 (49%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
+G+ SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 AGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|NP_035409.1| RING-box protein 2 [Mus musculus].
Length = 113
Score = 114 bits (285), Expect = 1e-25
Identities = 48/97 (49%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
+G+ SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 AGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|XP_980241.1| PREDICTED: RING-box protein 2-like [Mus musculus].
Length = 112
Score = 112 bits (280), Expect = 4e-25
Identities = 47/97 (48%), Positives = 62/97 (63%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SG+ SG G K F +KKWNAVA+W+WD+ D CA CR +MD C+ CQA ++C V
Sbjct: 19 SGSKSG-GNKMFSLKKWNAVAMWSWDVECDTCATCRVQVMDACLRCQAEN---KQKDCVV 74
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 75 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 111
>ref|XP_911668.2| PREDICTED: RING-box protein 2-like [Mus musculus].
Length = 113
Score = 112 bits (280), Expect = 4e-25
Identities = 47/97 (48%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
+G+ SG G K F +KKWNAVA+W+W++ D CAICR +MD C+ CQA E+C V
Sbjct: 20 AGSKSG-GDKMFSLKKWNAVAMWSWNVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|XP_910941.1| PREDICTED: RING-box protein 2-like [Mus musculus].
Length = 112
Score = 112 bits (280), Expect = 4e-25
Identities = 47/97 (48%), Positives = 62/97 (63%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SG+ SG G K F +KKWNAVA+W+WD+ D CA CR +MD C+ CQA ++C V
Sbjct: 19 SGSKSG-GNKMFSLKKWNAVAMWSWDVECDTCATCRVQVMDACLRCQAEN---KQKDCVV 74
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 75 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 111
>ref|NP_079665.1| anaphase-promoting complex subunit 11 [Mus musculus].
Length = 84
Score = 82.8 bits (203), Expect = 4e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLNAQQVQQHCPMCRQEWKFKE 84
>ref|NP_001033319.1| anaphase-promoting complex subunit 11 [Mus musculus].
Length = 84
Score = 82.8 bits (203), Expect = 4e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLNAQQVQQHCPMCRQEWKFKE 84
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,449,273
Number of extensions: 815168
Number of successful extensions: 2237
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 10
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012907
(965 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055063.1| E3 ubiquitin-protein ligase RBX1 [Homo sapiens]. 241 6e-64
Alignment gi|NP_055060.1| RING-box protein 2 isoform 1 [Homo sapiens]. 115 6e-26
Alignment gi|NP_001188299.1| RING-box protein 2 isoform 4 [Homo sapiens]. 91 2e-18
Alignment gi|NP_001002249.1| anaphase-promoting complex subunit 11 isofor... 82 6e-16
Alignment gi|NP_001002248.1| anaphase-promoting complex subunit 11 isofor... 82 6e-16
Alignment gi|NP_001002247.1| anaphase-promoting complex subunit 11 isofor... 82 6e-16
Alignment gi|NP_001002246.1| anaphase-promoting complex subunit 11 isofor... 82 6e-16
Alignment gi|NP_001002245.1| anaphase-promoting complex subunit 11 isofor... 82 6e-16
Alignment gi|NP_057560.8| anaphase-promoting complex subunit 11 isoform 2... 82 6e-16
Alignment gi|NP_899060.1| RING-box protein 2 isoform 3 [Homo sapiens]. 57 2e-08
>ref|NP_055063.1| E3 ubiquitin-protein ligase RBX1 [Homo sapiens].
Length = 108
Score = 241 bits (616), Expect = 6e-64
Identities = 108/108 (100%), Positives = 108/108 (100%)
Frame = +1
Query: 28 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 207
MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
Query: 208 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 351
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
Sbjct: 61 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>ref|NP_055060.1| RING-box protein 2 isoform 1 [Homo sapiens].
Length = 113
Score = 115 bits (288), Expect = 6e-26
Identities = 49/97 (50%), Positives = 63/97 (64%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SG+ SG G K F +KKWNAVA+W+WD+ D CAICR +MD C+ CQA E+C V
Sbjct: 20 SGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVV 75
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 76 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>ref|NP_001188299.1| RING-box protein 2 isoform 4 [Homo sapiens].
Length = 97
Score = 90.5 bits (223), Expect = 2e-18
Identities = 42/97 (43%), Positives = 54/97 (55%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 237
SG+ SG G K F +KKWNAVA+W+WD+ D CAICR +M V
Sbjct: 20 SGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVM-------------------V 59
Query: 238 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 348
WG CNH+FH C+S W+K CPL ++W Q+ G
Sbjct: 60 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 96
>ref|NP_001002249.1| anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens].
Length = 84
Score = 82.4 bits (202), Expect = 6e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>ref|NP_001002248.1| anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens].
Length = 84
Score = 82.4 bits (202), Expect = 6e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>ref|NP_001002247.1| anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens].
Length = 84
Score = 82.4 bits (202), Expect = 6e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>ref|NP_001002246.1| anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens].
Length = 84
Score = 82.4 bits (202), Expect = 6e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>ref|NP_001002245.1| anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens].
Length = 84
Score = 82.4 bits (202), Expect = 6e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>ref|NP_057560.8| anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens].
Length = 84
Score = 82.4 bits (202), Expect = 6e-16
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 88 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 267
+ ++K WN VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 268 FHCISRWLKTRQV---CPLDNREWEFQK 342
HCI +WL +QV CP+ +EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>ref|NP_899060.1| RING-box protein 2 isoform 3 [Homo sapiens].
Length = 90
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 58 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 207
SG+ SG G K F +KKWNAVA+W+WD+ D CAICR + L ++ + N+
Sbjct: 20 SGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVLDVKLKTNK 68
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,739,285
Number of extensions: 955134
Number of successful extensions: 2670
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2653
Number of HSP's successfully gapped: 10
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012907
(965 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 620 e-175
gb|GL893546.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 559 e-156
gb|GL894362.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 367 8e-99
Sscrofa_Chr15 359 2e-96
gb|GL894701.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 240 1e-60
gb|GL895045.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 222 3e-55
gb|GL895278.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 208 4e-51
Sscrofa_Chr02 204 6e-50
gb|GL894590.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 141 8e-31
Sscrofa_Chr14 123 2e-25
>Sscrofa_ChrX
|| Length = 144288218
Score = 620 bits (313), Expect = e-175
Identities = 474/524 (90%), Gaps = 4/524 (0%)
Strand = Plus / Minus
Query: 7 gacagatcgtgtgtttccaaaatggcggcagcgatggatgtggataccccgagcggcacc 66
|||||| | ||||||||||||||||| ||||| | |||||||||| |||||| |||||
Sbjct: 101470463 gacagaccatgtgtttccaaaatggcagcagcaacagatgtggataacccgagtggcacg 101470404
Query: 67 aacagcggcgcgggcaagaa-gcgctttgaagtgaaaaagtggaatgcagtagccctctg 125
|||||| || | |||||||| | | ||||||||||||||||| ||||||||| |||||||
Sbjct: 101470403 aacagcagcacaggcaagaaagtggtttgaagtgaaaaagtgcaatgcagtaaccctctg 101470344
Query: 126 ggcctgggatattgtggttgataactgtgccatctgcaggaaccacattatggatctttg 185
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 101470343 gggctgggatattgtggttgataactgtgccagctgcaggaaccacattatgtatctttg 101470284
Query: 186 catagagtgtcaagccaaccaggcgtcggctacttctgaagagtgcaccgttgcgtgggg 245
||||||||||||||||| |||||||| ||||||||| |||||| |||||||||| |||||
Sbjct: 101470283 catagagtgtcaagccagccaggcgttggctacttcggaagagcgcaccgttgcatgggg 101470224
Query: 246 agtctgt-aaccatgcttttcacttccactgcatctcccgctggctcaaaacacggcagg 304
||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| |||| |
Sbjct: 101470223 agtctgttaactgtgcttttcacttccactgcatctcctgctggcccaaaacatggcatg 101470164
Query: 305 tgtgtccgttggacaacagagagtgggaattccaaaaatatgggcattagaaaaagagaa 364
||||||| || ||| |||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 101470163 tgtgtccactgaacagcagagagtgggaattccaaaaatatgggcactagaaagagagaa 101470104
Query: 365 ttcttccagcaagctcaactgttttgttattcatgtaatgacttgccctcgtgttactta 424
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 101470103 gtcttccagcaagctcaactgttttggtattcatgtaatgacttgccctcctgtttctta 101470044
Query: 425 attataaattagatagaaccatgtcttttctgctttgtcttttcagtttgctgttccctt 484
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 101470043 attgtaaattagatagaaccatgtcttttctgctttgtcttttcagtttgctcttcctgc 101469984
Query: 485 agccatattgtattctgtgtcaaataaaatccagttggatgcta 528
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 101469983 agccatattgtat--cgtgtcaaataaaatccagttggatgcta 101469942
>gb|GL893546.1| Sus scrofa unplaced genomic scaffold chrU_scaffold230
Length = 293
Score = 559 bits (282), Expect = e-156
Identities = 282/282 (100%)
Strand = Plus / Plus
Query: 566 caaaggggtcctctcttccagctttggaaagcaaggtgtttgttcactaaagccggagca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 caaaggggtcctctcttccagctttggaaagcaaggtgtttgttcactaaagccggagca 71
Query: 626 gaactgtcgtgcaagcacgtcgcttggtcacaaggaagcctggtccacagcctggttccc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gaactgtcgtgcaagcacgtcgcttggtcacaaggaagcctggtccacagcctggttccc 131
Query: 686 ggtggcagttctgggcaagtcaccgctctgctctaggctttcctctgtaaagtggctgct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggtggcagttctgggcaagtcaccgctctgctctaggctttcctctgtaaagtggctgct 191
Query: 746 gaggattaaatgctatcatttgggtacctaaagaggctttataacactatataaatgtta 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gaggattaaatgctatcatttgggtacctaaagaggctttataacactatataaatgtta 251
Query: 806 actttgtgtataatgtgtttcttcttagtttagaaaactcat 847
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 actttgtgtataatgtgtttcttcttagtttagaaaactcat 293
>gb|GL894362.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3034
Length = 56118
Score = 367 bits (185), Expect = 8e-99
Identities = 345/397 (86%), Gaps = 6/397 (1%)
Strand = Plus / Minus
Query: 128 cctgggatattgtggttgataactgtgccatctgcaggaaccacattatggatctttgca 187
|||||| ||||||||||||||| ||||||| |||||| || ||||| |||| ||||||||
Sbjct: 48508 cctggggtattgtggttgataattgtgccagctgcagaaatcacatgatggttctttgca 48449
Query: 188 tagagtgtcaagccaaccaggcgtcggctacttctgaagagtgcaccgttgcgtggggag 247
|||| |||||||| ||||||| ||| ||| |||||||||||||||| ||| | |||||
Sbjct: 48448 tagaatgtcaagctaaccaggtgtctgcttcttctgaagagtgcactgtttcatgggggt 48389
Query: 248 tctgtaaccatgcttttcacttccactgcatctcccgctggctcaaaacacggcaggtgt 307
|||||||||||| ||| ||||||||||| |||| | | |||||||||||| ||||||||
Sbjct: 48388 tctgtaaccatgttttccacttccactgtgtctctcacaggctcaaaacacagcaggtgt 48329
Query: 308 gtccgttggacaacagagagtgggaattccaaaaatatgggcattagaaaaagagaattc 367
||| |||||| ||||||||||||||||||||| || | ||| |||||| |||||||
Sbjct: 48328 atccactggacagcagagagtgggaattccaaaagtacagacatcagaaaa--agaattc 48271
Query: 368 ttccagcaagctcaactgttttgttattcatgtaatgacttgccctcgtgttacttaatt 427
|| || |||||||||||| |||||||||||| |||||||| |||||| || ||||||
Sbjct: 48270 tttcatcaagctcaactgctttgttattcatttaatgactagccctcctg----ttaatt 48215
Query: 428 ataaattagatagaaccatgtcttttctgctttgtcttttcagtttgctgttcccttagc 487
||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 48214 ataaattagggagaaccatgtcttttctgctttgtcttttcagtttgctattcctacagc 48155
Query: 488 catattgtattctgtgtcaaataaaatccagttggat 524
|||||||||||||||||||||||||||||||||||||
Sbjct: 48154 catattgtattctgtgtcaaataaaatccagttggat 48118
>Sscrofa_Chr15
|| Length = 157681621
Score = 359 bits (181), Expect = 2e-96
Identities = 344/397 (86%), Gaps = 6/397 (1%)
Strand = Plus / Minus
Query: 128 cctgggatattgtggttgataactgtgccatctgcaggaaccacattatggatctttgca 187
|||||| ||||||||||||||| ||||||| |||||| || |||| |||| ||||||||
Sbjct: 89613676 cctggggtattgtggttgataattgtgccagctgcagaaatcacacgatggttctttgca 89613617
Query: 188 tagagtgtcaagccaaccaggcgtcggctacttctgaagagtgcaccgttgcgtggggag 247
|||| |||||||| ||||||| ||| ||| |||||||||||||||| ||| | |||||
Sbjct: 89613616 tagaatgtcaagctaaccaggtgtctgcttcttctgaagagtgcactgtttcatgggggt 89613557
Query: 248 tctgtaaccatgcttttcacttccactgcatctcccgctggctcaaaacacggcaggtgt 307
|||||||||||| ||| ||||||||||| |||| | | |||||||||||| ||||||||
Sbjct: 89613556 tctgtaaccatgttttccacttccactgtgtctctcacaggctcaaaacacagcaggtgt 89613497
Query: 308 gtccgttggacaacagagagtgggaattccaaaaatatgggcattagaaaaagagaattc 367
||| |||||| ||||||||||||||||||||| || | ||| |||||| |||||||
Sbjct: 89613496 atccactggacagcagagagtgggaattccaaaagtacagacatcagaaaa--agaattc 89613439
Query: 368 ttccagcaagctcaactgttttgttattcatgtaatgacttgccctcgtgttacttaatt 427
|| || |||||||||||| |||||||||||| |||||||| |||||| || ||||||
Sbjct: 89613438 tttcatcaagctcaactgctttgttattcatttaatgactagccctcctg----ttaatt 89613383
Query: 428 ataaattagatagaaccatgtcttttctgctttgtcttttcagtttgctgttcccttagc 487
||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 89613382 ataaattagggagaaccatgtcttttctgctttgtcttttcagtttgctattcctacagc 89613323
Query: 488 catattgtattctgtgtcaaataaaatccagttggat 524
|||||||||||||||||||||||||||||||||||||
Sbjct: 89613322 catattgtattctgtgtcaaataaaatccagttggat 89613286
>gb|GL894701.1| Sus scrofa unplaced genomic scaffold chrU_scaffold334
Length = 621
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 834 tttagaaaactcatcttgaaataatcttagctggcaaaagagtgatctgtgaactaaagt 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagaaaactcatcttgaaataatcttagctggcaaaagagtgatctgtgaactaaagt 562
Query: 894 tggaaattgatgtcatttaaaattgagttaacaggagaattcgcgtttccttcccttttt 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaaattgatgtcatttaaaattgagttaacaggagaattcgcgtttccttcccttttt 502
Query: 954 g 954
|
Sbjct: 501 g 501
>gb|GL895045.1| Sus scrofa unplaced genomic scaffold chrU_scaffold365
Length = 766
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 342 atatgggcattagaaaaagagaattcttccagcaagctcaactgttttgttattcatgta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atatgggcattagaaaaagagaattcttccagcaagctcaactgttttgttattcatgta 53
Query: 402 atgacttgccctcgtgttacttaattataaattagatagaaccatgtctttt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atgacttgccctcgtgttacttaattataaattagatagaaccatgtctttt 1
>gb|GL895278.1| Sus scrofa unplaced genomic scaffold chrU_scaffold386
Length = 935
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 cgagacgacagatcgtgtgtttccaaaatggcggcagcgatggatgtggataccccgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cgagacgacagatcgtgtgtttccaaaatggcggcagcgatggatgtggataccccgagc 248
Query: 61 ggcaccaacagcggcgcgggcaagaagcgctttgaagtgaaaaag 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggcaccaacagcggcgcgggcaagaagcgctttgaagtgaaaaag 293
>Sscrofa_Chr02
|| Length = 162569375
Score = 204 bits (103), Expect = 6e-50
Identities = 291/352 (82%), Gaps = 5/352 (1%)
Strand = Plus / Plus
Query: 194 gtcaagccaaccaggcgtcggctacttctgaagagtgcaccgttgcgtggggagtctgta 253
||||||| |||||||| || |||| |||||||||||||| | |||| ||||||||| |
Sbjct: 11199631 gtcaagctaaccaggcatcagctatttctgaagagtgcagcattgcactgggagtctgca 11199690
Query: 254 accatgcttttcacttccactgcatctcccgctggctcaaaacacggcagg-tgtgtccg 312
||| |||||||| ||||| |||| |||||| |||| |||||| |||||||
Sbjct: 11199691 gccactattttcactctcactgttcttcccagtggctcccaacagggcaggctgtgtcca 11199750
Query: 313 ttggacaacagagagtgggaattccaaaaatatgggcattagaaaaagagaattcttcca 372
||||| ||||||||| ||||||||||||||||| || ||||||||||||| |||||||
Sbjct: 11199751 ctggaccacagagagtaggaattccaaaaatatgagccctagaaaaagagaagtcttcca 11199810
Query: 373 gcaagctcaactgttttgttattcatgtaatgacttgccctcgtgttacttaattataaa 432
||||| ||| ||||||||||||||| ||| ||||||| || ||| |||||| ||||||
Sbjct: 11199811 acaagcacaagtgttttgttattcatttaacgacttgctgtcctgtcacttaactataaa 11199870
Query: 433 ttagatagaaccatgtcttttctgctttgtcttttcagtttgctgttcccttagccatat 492
| ||||| ||||||||| ||||||||||| ||||| |||||||||| ||||||||
Sbjct: 11199871 t----tagaatcatgtctttgctgctttgtctcttcagcttgctgttcctatagccatag 11199926
Query: 493 tgtattctgtgtcaaataaaatccagttggatgctagagcagatgctgtctc 544
||||||||||||||||||||||||| ||||| | ||| ||||||||||||
Sbjct: 11199927 tgtattctgtgtcaaataaaatccacctggattcgagaaaagatgctgtctc 11199978
Score = 168 bits (85), Expect = 4e-39
Identities = 116/125 (92%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 82 aagaagcgctttgaagtgaaaaagtggaatgcagtagccctctgggcctgggatattgtg 141
|||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 11199388 aagaagagctttgaagtgaaaaagtggaatgtagtagccctctgggcttgggatattgtg 11199447
Query: 142 gttgataactgtgccatctgcaggaaccacattatggatctttgcatagagtgtcaagcc 201
|||||||| |||||||||| ||| |||||| ||||||||||||||||||| ||||||||
Sbjct: 11199448 gttgataa-tgtgccatcttcagaaaccactttatggatctttgcatagattgtcaagct 11199506
Query: 202 aacca 206
|||||
Sbjct: 11199507 aacca 11199511
Score = 81.8 bits (41), Expect = 6e-13
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 856 aatcttagctggcaaaagagtgatctgtgaactaaagttggaaattgatgtcatttaaaa 915
|||||| ||| ||| |||||| | || |||||| ||||||||||| |||||| |||||||
Sbjct: 11200336 aatcttggctagcagaagagtaacctatgaactcaagttggaaatcgatgtcttttaaaa 11200395
Query: 916 ttgagttaacaggagaattcgcgtttccttccc 948
|||||||| ||||| ||||| |||||||||||
Sbjct: 11200396 ttgagttagcaggaaaattcaagtttccttccc 11200428
>gb|GL894590.1| Sus scrofa unplaced genomic scaffold chrU_scaffold324
Length = 559
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 185 gcatagagtgtcaagccaaccaggcgtcggctacttctgaagagtgcaccgttgcgtggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gcatagagtgtcaagccaaccaggcgtcggctacttctgaagagtgcaccgttgcgtggg 293
Query: 245 gagtctgtaac 255
|||||||||||
Sbjct: 292 gagtctgtaac 282
>Sscrofa_Chr14
|| Length = 153851969
Score = 123 bits (62), Expect = 2e-25
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 83 agaagcgctttgaagtgaaaaagtggaatgcagtagccctctgggcctgggatattgtgg 142
|||||| ||||| ||||||||||||||| |||| | | ||||| |||||||||| |||||
Sbjct: 30034793 agaagccctttgcagtgaaaaagtggaaagcagcacctctctgagcctgggatagtgtgg 30034734
Query: 143 ttgataactgtgccatctgcaggaaccacattatggatctttgcatagagtgtcaagcca 202
|| |||||||||||||||||| | ||| ||||||||||| ||||||| |||||| | |
Sbjct: 30034733 gtggtaactgtgccatctgcagcgaacacgttatggatcttcgcatagaatgtcaaacta 30034674
Query: 203 accaggcgtcggctacttctgaagag 228
||||||| || |||| ||||||||||
Sbjct: 30034673 accaggcatctgctatttctgaagag 30034648
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,652,669
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 18
Length of query: 965
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 944
Effective length of database: 2,808,413,156
Effective search space: 2651142019264
Effective search space used: 2651142019264
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)