BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012918
(1113 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862055.1| PREDICTED: similar to RNA binding motif protein... 521 e-153
Alignment gi|XP_850723.1| PREDICTED: similar to RNA-binding protein 9 (RN... 536 e-152
Alignment gi|XP_862115.1| PREDICTED: similar to RNA-binding protein 9 (RN... 527 e-150
Alignment gi|XP_538402.2| PREDICTED: similar to RNA binding motif protein... 511 e-149
Alignment gi|XP_861967.1| PREDICTED: similar to RNA binding motif protein... 479 e-135
Alignment gi|XP_861996.1| PREDICTED: similar to RNA binding motif protein... 454 e-132
Alignment gi|XP_862142.1| PREDICTED: similar to RNA-binding protein 9 (RN... 438 e-123
Alignment gi|XP_851461.1| PREDICTED: similar to ataxin 2-binding protein ... 300 2e-81
Alignment gi|XP_863750.1| PREDICTED: similar to ataxin 2-binding protein ... 300 2e-81
Alignment gi|XP_863775.1| PREDICTED: similar to ataxin 2-binding protein ... 293 2e-79
>ref|XP_862055.1| PREDICTED: similar to RNA binding motif protein 9 isoform 2 isoform
7 [Canis familiaris].
Length = 408
Score = 521 bits (1343), Expect(2) = e-153
Identities = 266/322 (82%), Positives = 266/322 (82%), Gaps = 1/322 (0%)
Frame = +1
Query: 7 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYG 186
MDQPRNPCENEPLTPGYHGFPARDSQGNQEPT TPDAMV EYG
Sbjct: 1 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYG 60
Query: 187 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXX 363
VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT TE
Sbjct: 61 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSE 120
Query: 364 XXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 543
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD
Sbjct: 121 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 180
Query: 544 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 723
ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS
Sbjct: 181 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 240
Query: 724 FQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTV 903
FQADVSLGNDAAVPLSGRGGINTYIPLI IPGFPYP FRGAHLRGRGRTV
Sbjct: 241 FQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTV 296
Query: 904 YGAVRAVPPTAIPAYPSVVYQD 969
YGAVRAVPPTA
Animal-Genome cDNA 20110601C-012918
Animal-Genome cDNA 20110601C-012918
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012918
(1113 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192301.1| RNA binding protein fox-1 homolog 2 [Bos tau... 530 e-151
Alignment gi|NP_001069286.1| RNA binding protein fox-1 homolog 1 [Bos tau... 246 2e-65
Alignment gi|NP_001069005.1| RNA binding protein fox-1 homolog 3 [Bos tau... 189 5e-48
Alignment gi|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]. 59 8e-09
Alignment gi|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]. 59 1e-08
Alignment gi|NP_001029948.1| transformer-2 protein homolog beta [Bos taur... 58 2e-08
Alignment gi|NP_001193433.1| RNA-binding protein 39 [Bos taurus]. 57 2e-08
Alignment gi|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-l... 56 7e-08
Alignment gi|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like... 56 7e-08
Alignment gi|NP_001029450.1| cold-inducible RNA-binding protein [Bos taur... 55 9e-08
>ref|NP_001192301.1| RNA binding protein fox-1 homolog 2 [Bos taurus].
Length = 449
Score = 530 bits (1365), Expect = e-151
Identities = 271/361 (75%), Positives = 273/361 (75%)
Frame = +1
Query: 31 ENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYA 210
+NEPLTPGYHGFP RDSQGNQEPT TPDAMV EYGVPHTQDYA
Sbjct: 61 QNEPLTPGYHGFPTRDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYA 120
Query: 211 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPK 390
GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTE PK
Sbjct: 121 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPK 180
Query: 391 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 570
RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH
Sbjct: 181 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 240
Query: 571 GTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN 750
GTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN
Sbjct: 241 GTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN 300
Query: 751 DAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPP 930
DAAVPLSGRGGINTYIPLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVPP
Sbjct: 301 DAAVPLSGRGGINTYIPLISLPLIPAYP VVYQD
Sbjct: 297 YGAVRAVPPTAIPAYPGVVYQD 318
Score = 38.5 bits (88), Expect(2) = e-153
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +2
Query: 986 TSMVDMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
++ D QPTD HS TAT MAGCTQPTP
Sbjct: 335 SNRADTQPTDTHSPLLQPRPQPPPLPLPPTATVMAGCTQPTP 376
>ref|XP_850723.1| PREDICTED: similar to RNA-binding protein 9 (RNA binding motif
protein 9) (Hexaribonucleotide binding protein 2)
(Repressor of tamoxifen transcriptional activity) isoform
3 [Canis familiaris].
Length = 394
Score = 536 bits (1382), Expect = e-152
Identities = 279/370 (75%), Positives = 279/370 (75%), Gaps = 1/370 (0%)
Frame = +1
Query: 7 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYG 186
MDQPRNPCENEPLTPGYHGFPARDSQGNQEPT TPDAMV EYG
Sbjct: 1 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYG 60
Query: 187 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXX 363
VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT TE
Sbjct: 61 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSE 120
Query: 364 XXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 543
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD
Sbjct: 121 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 180
Query: 544 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 723
ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS
Sbjct: 181 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 240
Query: 724 FQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTV 903
FQADVSLGNDAAVPLSGRGGINTYIPLI IPGFPYP FRGAHLRGRGRTV
Sbjct: 241 FQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTV 296
Query: 904 YGAVRAVPPTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDG 1083
YGAVRAVPPTAIPAYP VVYQD SDG
Sbjct: 297 YGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDG 356
Query: 1084 YGRVYTADPY 1113
YGRVYTADPY
Sbjct: 357 YGRVYTADPY 366
>ref|XP_862115.1| PREDICTED: similar to RNA-binding protein 9 (RNA binding motif
protein 9) (Hexaribonucleotide binding protein 2)
(Repressor of tamoxifen transcriptional activity) isoform
8 [Canis familiaris].
Length = 395
Score = 527 bits (1357), Expect = e-150
Identities = 276/371 (74%), Positives = 278/371 (74%), Gaps = 2/371 (0%)
Frame = +1
Query: 7 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYG 186
MDQPRNPCENEPLTPGYHGFPARDSQGNQEPT TPDAMV EYG
Sbjct: 1 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYG 60
Query: 187 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXX 363
VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT TE
Sbjct: 61 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSE 120
Query: 364 XXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 543
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD
Sbjct: 121 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 180
Query: 544 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 723
ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS
Sbjct: 181 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 240
Query: 724 FQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTV 903
FQADVSLGNDAAVPLSGRGGINTYIPLI IPGFPYP FRGAHLRGRGRTV
Sbjct: 241 FQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTV 296
Query: 904 YGAVRAVPPTAIPAYPSVVYQD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD 1080
YGAVRAVPPTAIPAYP +V Q+ SD
Sbjct: 297 YGAVRAVPPTAIPAYPGIVLQEPIISAKIPQGGYVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPP 360
Query: 931 TAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADP 1110
AIPAYP VVYQD SDGYGRVYTADP
Sbjct: 361 AAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADP 420
Query: 1111 Y 1113
Y
Sbjct: 421 Y 421
>ref|NP_001069286.1| RNA binding protein fox-1 homolog 1 [Bos taurus].
Length = 355
Score = 246 bits (629), Expect = 2e-65
Identities = 155/306 (50%), Positives = 171/306 (55%), Gaps = 10/306 (3%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
+GNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 247 STQAHGEQSS--NSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q+H EQS+ S T +G+ TT+ PKRLHVSNIPFR
Sbjct: 68 PAQSHSEQSAADTSAHTVSGTATTDDSAPTDGQPQTQPSENTENKSQ-PKRLHVSNIPFR 126
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFG GFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 127 FRDPDLRQMFG------------------GFGFVTFENSADADRAREKLHGTVVEGRKIE 168
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 169 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 227
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 228 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 277
Query: 952 SVVYQD 969
VVYQD
Sbjct: 278 GVVYQD 283
>ref|NP_001069005.1| RNA binding protein fox-1 homolog 3 [Bos taurus].
Length = 328
Score = 189 bits (479), Expect = 5e-48
Identities = 123/273 (45%), Positives = 132/273 (48%), Gaps = 9/273 (3%)
Frame = +1
Query: 175 AEYGVPH---TQDYAGQTS---EHNLTLYGSTQAHGEQSSNSPSTQ--NGSLTTEXXXXX 330
AEY P T DY+GQT EH +TLY Q H EQ S+ STQ G+ T
Sbjct: 20 AEYAPPPPHPTPDYSGQTPVPPEHGMTLYTPAQTHPEQPSSDTSTQPITGAQTVPQTDEA 79
Query: 331 XXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 510
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK
Sbjct: 80 AQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK- 138
Query: 511 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGA 690
VNNATARVMTNKK PY NGWKL+PVVGA
Sbjct: 139 ------------------------------VNNATARVMTNKKTANPYTNGWKLNPVVGA 168
Query: 691 VYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFR 870
VYGPE YA + GFPYP +R
Sbjct: 169 VYGPEFYA-----------------------------------VTGFPYP-TTGTAVAYR 192
Query: 871 GAHLRGRGRTVYGAVRAV-PPTAIPAYPSVVYQ 966
GAHLRGRGR VY RA PP IP Y + + Q
Sbjct: 193 GAHLRGRGRAVYNTFRAAPPPPPIPTYGAALEQ 225
>ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus].
Length = 645
Score = 58.9 bits (141), Expect = 8e-09
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
+++ N D +L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G + G+ I V A +V
Sbjct: 253 GKEITGKVIFVGRAQKKV 270
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +1
Query: 400 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 579
+ N+ + L F FG IL +++ +E GSKG+ FV FE AD+A EK++G +
Sbjct: 103 IKNLDKSIDNKALYDAAYRYAQPATATAATAAAAAAAAYSD 356
Query: 1081 GYGRVYTADPY 1113
GYGRVYTADPY
Sbjct: 357 GYGRVYTADPY 367
>ref|XP_538402.2| PREDICTED: similar to RNA binding motif protein 9 isoform 2 isoform
1 [Canis familiaris].
Length = 384
Score = 511 bits (1317), Expect(2) = e-149
Identities = 261/316 (82%), Positives = 261/316 (82%), Gaps = 1/316 (0%)
Frame = +1
Query: 7 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYG 186
MDQPRNPCENEPLTPGYHGFPARDSQGNQEPT TPDAMV EYG
Sbjct: 1 MDQPRNPCENEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYG 60
Query: 187 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXX 363
VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT TE
Sbjct: 61 VPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSE 120
Query: 364 XXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 543
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD
Sbjct: 121 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 180
Query: 544 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 723
ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS
Sbjct: 181 ADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASS 240
Query: 724 FQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTV 903
FQADVSLGNDAAVPLSGRGGINTYIPLI IPGFPYP FRGAHLRGRGRTV
Sbjct: 241 FQADVSLGNDAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTV 296
Query: 904 YGAVRAVPPTAIPAYP 951
YGAVRAVPPTAIPAYP
Sbjct: 297 YGAVRAVPPTAIPAYP 312
Score = 38.1 bits (87), Expect(2) = e-149
Identities = 19/38 (50%), Positives = 19/38 (50%)
Frame = +2
Query: 998 DMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
D QPTD HS TAT MAGCTQPTP
Sbjct: 315 DTQPTDTHSPLLQPRPQPPPLPLPPTATVMAGCTQPTP 352
>ref|XP_861967.1| PREDICTED: similar to RNA binding motif protein 9 isoform 1 isoform 4
[Canis familiaris].
Length = 377
Score = 479 bits (1234), Expect = e-135
Identities = 254/345 (73%), Positives = 254/345 (73%), Gaps = 1/345 (0%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQAH 261
QGNQEPT TPDAMV EYGVPHTQDYAGQTSEHNLTLYGSTQAH
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQAH 68
Query: 262 GEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
GEQSSNSPSTQNGSLT TE PKRLHVSNIPFRFRDPDL
Sbjct: 69 GEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 128
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 129 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 188
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 189 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 248
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXXX 978
PLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 249 PLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 304
Query: 979 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 305 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 349
>ref|XP_861996.1| PREDICTED: similar to RNA binding motif protein 9 isoform 2 isoform
5 [Canis familiaris].
Length = 350
Score = 454 bits (1169), Expect(2) = e-132
Identities = 236/291 (81%), Positives = 236/291 (81%), Gaps = 1/291 (0%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQAH 261
TFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGML 162
Query: 580 VEGRKIEVNNATAR 621
+ RK+ V +R
Sbjct: 163 LNDRKVFVGRFKSR 176
>ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus].
Length = 636
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 7e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 573
+ + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA EK++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 574 TVVEGRKIEVNNATAR 621
++ RK+ V +R
Sbjct: 161 MLLNDRKVFVGRFKSR 176
>ref|NP_001029948.1| transformer-2 protein homolog beta [Bos taurus].
Length = 288
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Frame = +1
Query: 433 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 606
DLR++F ++G I DV I++++ R S+GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus].
Length = 530
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +1
Query: 385 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 558
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 255 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 314
Query: 559 EKLHGTVVEGRKIEVNNATAR 621
E+L+G + GR ++V + T R
Sbjct: 315 EQLNGFELAGRPMKVGHVTER 335
>ref|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-like [Bos taurus].
Length = 613
Score = 55.8 bits (133), Expect = 7e-08
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
++V N+ + L+ +F QFGK+L V+++ ++ G S+GFGFV FE +A +A ++
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G V GR + V A RV
Sbjct: 253 GREVSGRLLYVGRAQKRV 270
Score = 48.9 bits (115), Expect = 8e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 573
+ + N+ + L F FG IL +++ +E GS+GFGFV FE A A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNG 160
Query: 574 TVVEGRKIEVNNATAR 621
++ RK+ V + +R
Sbjct: 161 MLLNDRKVFVGHFKSR 176
>ref|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like isoform 19 [Bos
taurus].
Length = 613
Score = 55.8 bits (133), Expect = 7e-08
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
++V N+ + L+ +F QFGK+L V+++ ++ G S+GFGFV FE +A +A ++
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G V GR + V A RV
Sbjct: 253 GREVSGRLLYVGRAQKRV 270
Score = 4 QGNQEPT TPDAMV EYGVPHTQDYAGQTSEHNLTLYGSTQAH
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQAH 68
Query: 262 GEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
GEQSSNSPSTQNGSLT TE PKRLHVSNIPFRFRDPDL
Sbjct: 69 GEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 128
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 129 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 188
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 189 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 248
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYP 951
PLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP
Sbjct: 249 PLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYP 295
Score = 38.1 bits (87), Expect(2) = e-132
Identities = 19/38 (50%), Positives = 19/38 (50%)
Frame = +2
Query: 998 DMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
D QPTD HS TAT MAGCTQPTP
Sbjct: 298 DTQPTDTHSPLLQPRPQPPPLPLPPTATVMAGCTQPTP 335
>ref|XP_862142.1| PREDICTED: similar to RNA-binding protein 9 (RNA binding motif
protein 9) (Hexaribonucleotide binding protein 2)
(Repressor of tamoxifen transcriptional activity) isoform
9 [Canis familiaris].
Length = 358
Score = 438 bits (1127), Expect = e-123
Identities = 236/344 (68%), Positives = 236/344 (68%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQAH 261
QGNQEPT TPDAMV EYGVPHTQDYAGQTSEHNLTLYGSTQAH
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQAH 68
Query: 262 GEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDLR 441
GEQSSNSPSTQNGSLTTE PKRLHVSNIPFRFRDPDLR
Sbjct: 69 GEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLR 128
Query: 442 QMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 621
QMFG GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR
Sbjct: 129 QMFG------------------GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 170
Query: 622 VMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIP 801
VMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIP
Sbjct: 171 VMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIP 230
Query: 802 LISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXXXX 981
LI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 231 LI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFYG 286
Query: 982 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 287 ADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 330
>ref|XP_851461.1| PREDICTED: similar to ataxin 2-binding protein 1 isoform 1 isoform 1
[Canis familiaris].
Length = 418
Score = 300 bits (767), Expect = 2e-81
Identities = 183/354 (51%), Positives = 197/354 (55%), Gaps = 10/354 (2%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
QGNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 247 STQAHGEQSSNSPSTQ--NGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS+ S Q +G+ T PKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSAADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS8.9 bits (115), Expect = 8e-06
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 573
+ + N+ + L F FG IL +++ +E GS+GFGFV FE A A ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNG 160
Query: 574 TVVEGRKIEVNNATAR 621
++ RK+ V + +R
Sbjct: 161 MLLNDRKVFVGHFKSR 176
>ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus].
Length = 213
Score = 55.5 bits (132), Expect = 9e-08
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +1
Query: 391 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK 564
+L V + F + L Q+F ++G+I +V ++ + + S+GFGFVTFEN DA A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 565 LHGTVVEGRKIEVNNA 612
++G V+GR+I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,816,420
Number of extensions: 1278048
Number of successful extensions: 3779
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 34
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
ADADRAREKLHGTVVEGRKIE 207
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 266
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 316
Query: 952 SVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
VVYQ+ SD YGRVY ADPY
Sbjct: 317 GVVYQE-------PVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 363
>ref|XP_863750.1| PREDICTED: similar to ataxin 2-binding protein 1 isoform 2 isoform 2
[Canis familiaris].
Length = 392
Score = 300 bits (767), Expect = 2e-81
Identities = 183/354 (51%), Positives = 197/354 (55%), Gaps = 10/354 (2%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
QGNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 247 STQAHGEQSSNSPSTQ--NGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS+ S Q +G+ T PKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSAADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 266
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 316
Query: 952 SVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
VVYQ+ SD YGRVY ADPY
Sbjct: 317 GVVYQE-------PVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 363
>ref|XP_863775.1| PREDICTED: similar to ataxin 2-binding protein 1 isoform 3 isoform
3 [Canis familiaris].
Length = 395
Score = 293 bits (750), Expect = 2e-79
Identities = 172/306 (56%), Positives = 186/306 (60%), Gaps = 10/306 (3%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
QGNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 247 STQAHGEQSSNSPSTQ--NGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS+ S Q +G+ T PKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSAADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 266
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 316
Query: 952 SVVYQD 969
VVYQ+
Sbjct: 317 GVVYQE 322
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,696,616
Number of extensions: 1307726
Number of successful extensions: 4835
Number of sequences better than 1.0e-05: 117
Number of HSP's gapped: 4565
Number of HSP's successfully gapped: 166
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012918
(1113 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126094.1| PREDICTED: RNA binding protein fox-1 homolog... 488 e-138
Alignment gi|XP_003355411.1| PREDICTED: RNA binding protein fox-1 homolog... 460 e-136
Alignment gi|XP_003355412.1| PREDICTED: RNA binding protein fox-1 homolog... 442 e-124
Alignment gi|XP_003124663.2| PREDICTED: RNA binding protein fox-1 homolog... 290 1e-78
Alignment gi|XP_001925208.3| PREDICTED: RNA binding protein fox-1 homolog... 170 2e-42
Alignment gi|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [... 59 4e-09
Alignment gi|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-l... 59 4e-09
Alignment gi|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [... 59 6e-09
Alignment gi|NP_001070689.1| transformer-2 protein homolog beta [Sus scro... 58 1e-08
Alignment gi|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-l... 58 1e-08
>ref|XP_003126094.1| PREDICTED: RNA binding protein fox-1 homolog 2-like isoform 1 [Sus
scrofa].
Length = 376
Score = 488 bits (1255), Expect = e-138
Identities = 256/345 (74%), Positives = 257/345 (74%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPTATPDAMV AEYGVPHTQDYAGQTSEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTATPDAMVQPFTTIPFPPPPQNGIPAEYGVPHTQDYAGQTSEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
HGEQSSNSPSTQNGSLTTE PKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXXX 978
PLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 248 PLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 303
Query: 979 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 304 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 348
>ref|XP_003355411.1| PREDICTED: RNA binding protein fox-1 homolog 2-like isoform 2 [Sus
scrofa].
Length = 367
Score = 460 bits (1183), Expect(2) = e-136
Identities = 240/297 (80%), Positives = 241/297 (81%), Gaps = 1/297 (0%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPTATPDAMV AEYGVPHTQDYAGQTSEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTATPDAMVQPFTTIPFPPPPQNGIPAEYGVPHTQDYAGQTSEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPD 435
HGEQSSNSPSTQNGSLT TE PKRLHVSNIPFRFRDPD
Sbjct: 68 HGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 127
Query: 436 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 615
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187
Query: 616 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 795
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY
Sbjct: 188 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 247
Query: 796 IPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQ 966
IPLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP V Q
Sbjct: 248 IPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQ 300
Score = 44.3 bits (103), Expect(2) = e-136
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +2
Query: 995 VDMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
VDMQPTDMHS TAT MAGCTQPTP
Sbjct: 297 VDMQPTDMHSLLLQPQPPLLQPPPPLTATVMAGCTQPTP 335
>ref|XP_003355412.1| PREDICTED: RNA binding protein fox-1 homolog 2-like isoform 3 [Sus
scrofa].
Length = 358
Score = 442 bits (1136), Expect = e-124
Identities = 238/345 (68%), Positives = 239/345 (69%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPTATPDAMV AEYGVPHTQDYAGQTSEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTATPDAMVQPFTTIPFPPPPQNGIPAEYGVPHTQDYAGQTSEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
HGEQSSNSPSTQNGSLTTE PKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFG GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFG------------------GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 169
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 170 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 229
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXXX 978
PLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 230 PLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 285
Query: 979 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 286 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 330
>ref|XP_003124663.2| PREDICTED: RNA binding protein fox-1 homolog 1 isoform 1 [Sus
scrofa].
Length = 562
Score = 290 bits (742), Expect = 1e-78
Identities = 178/321 (55%), Positives = 193/321 (60%), Gaps = 11/321 (3%)
Frame = +1
Query: 40 PLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYA 210
PL+P FP QGNQE A PD M AEY PH +Y
Sbjct: 67 PLSP----FPIL--QGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYT 119
Query: 211 GQTS--EHNLTLYGSTQAHGEQSS--NSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXX 378
GQT+ EH L LY Q+H EQS+ S T +G+ T
Sbjct: 120 GQTTVPEHTLNLYPPAQSHSEQSAADTSAHTVSGTATQTDDAAPTDGQPQTQPSENTENK 179
Query: 379 XXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 558
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR
Sbjct: 180 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 239
Query: 559 EKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANG-WKLSPVVGAVYGPELYAASSF--Q 729
EKLHGTVVEGRKIEVNNATARVMTNKK V PY NG WKL PVVGAVYGPE YA + Q
Sbjct: 240 EKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGNWKLIPVVGAVYGPEFYAGTVLLCQ 299
Query: 730 ADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYG 909
A+ + + P S L+ +PGFPYP +RGAHLRGRGRTVY
Sbjct: 300 ANQEGSSMYSAPSS----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYN 348
Query: 910 AVR-AVPPTAIPAYPSVVYQD 969
R A PP IPAY VVYQ+
Sbjct: 349 TFRAAAPPPPIPAYGGVVYQE 369
>ref|XP_001925208.3| PREDICTED: RNA binding protein fox-1 homolog 2-like [Sus scrofa].
Length = 135
Score = 170 bits (430), Expect = 2e-42
Identities = 88/112 (78%), Positives = 88/112 (78%), Gaps = 1/112 (0%)
Frame = +1
Query: 175 AEYGVPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXX 351
AEYGVPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT TE
Sbjct: 20 AEYGVPHTQDYAGQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQT 79
Query: 352 XXXXXXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 507
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK
Sbjct: 80 QSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 131
>ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [Sus scrofa].
Length = 644
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
+++ N D +L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G + G+ I V A +V
Sbjct: 253 GKEISGKVIFVGRAQKKV 270
Score = 53.5 bits (127), Expect = 2e-07
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +1
Query: 400 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 579
+ N+ + L F FG IL +++ +E GSKG+ FV FE AD+A EK++G +
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGML 162
Query: 580 VEGRKIEVNNATAR 621
+ RK+ V +R
Sbjct: 163 LNDRKVFVGRFKSR 176
>ref|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 656
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
+++ N D +L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G + G+ I V A +V
Sbjct: 253 GKEISGKVIFVGRAQKKV 270
Score = 53.5 bits (127), Expect = 2e-07
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +1
Query: 400 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 579
+ N+ + L F FG IL +++ +E GSKG+ FV FE AD+A EK++G +
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGML 162
Query: 580 VEGRKIEVNNATAR 621
+ RK+ V +R
Sbjct: 163 LNDRKVFVGRFKSR 176
>ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa].
Length = 636
Score = 58.5 bits (140), Expect = 6e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 4e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 573
+ + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA EK++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 574 TVVEGRKIEVNNATAR 621
++ RK+ V +R
Sbjct: 161 MLLNDRKVFVGRFKSR 176
>ref|NP_001070689.1| transformer-2 protein homolog beta [Sus scrofa].
Length = 288
Score = 57.8 bits (138), Expect = 1e-08
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Frame = +1
Query: 433 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 606
DLR++F ++G I DV I++++ R S+GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>ref|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-like [Sus scrofa].
Length = 610
Score = 57.8 bits (138), Expect = 1e-08
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 394 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 570
++V N+ + L+ +F QFGKIL V+++ ++ G S+GFGFV FE DA +A ++
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 571 GTVVEGRKIEVNNATARV 624
G V GR + V A RV
Sbjct: 253 GKEVSGRLLYVGRAQKRV 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,892,916
Number of extensions: 819662
Number of successful extensions: 2529
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2462
Number of HSP's successfully gapped: 39
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012918
(1113 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444334.3| RNA binding protein fox-1 homolog 2 isoform 1 [... 522 e-148
Alignment gi|NP_001104297.1| RNA binding protein fox-1 homolog 2 isoform ... 509 e-144
Alignment gi|NP_780596.1| RNA binding protein fox-1 homolog 2 isoform 2 [... 486 e-142
Alignment gi|NP_001104298.1| RNA binding protein fox-1 homolog 2 isoform ... 487 e-138
Alignment gi|NP_001104300.1| RNA binding protein fox-1 homolog 2 isoform ... 474 e-134
Alignment gi|NP_001104299.1| RNA binding protein fox-1 homolog 2 isoform ... 465 e-131
Alignment gi|NP_899011.2| RNA binding protein fox-1 homolog 1 isoform alp... 300 1e-81
Alignment gi|NP_067452.2| RNA binding protein fox-1 homolog 1 isoform gam... 300 2e-81
Alignment gi|NP_001020102.2| RNA binding protein fox-1 homolog 3 isoform ... 267 1e-71
Alignment gi|NP_001034257.1| RNA binding protein fox-1 homolog 3 isoform ... 264 8e-71
>ref|NP_444334.3| RNA binding protein fox-1 homolog 2 isoform 1 [Mus musculus].
Length = 449
Score = 522 bits (1344), Expect = e-148
Identities = 269/362 (74%), Positives = 272/362 (75%), Gaps = 1/362 (0%)
Frame = +1
Query: 31 ENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYA 210
+NEPLTPGYHGFPARD QGNQEPT TPDAMV EYGVPHTQDYA
Sbjct: 60 QNEPLTPGYHGFPARDGQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYA 119
Query: 211 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXP 387
GQTSEHNLTLYGSTQ HGEQSSNSPS QNGSLT TE P
Sbjct: 120 GQTSEHNLTLYGSTQPHGEQSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTP 179
Query: 388 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 567
KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
Sbjct: 180 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 239
Query: 568 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 747
HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG
Sbjct: 240 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 299
Query: 748 NDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVP 927
N+AAVPLSGRGGINTYIPLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVP
Sbjct: 300 NEAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP 359
Query: 928 PTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTAD 1107
PTAIPAYP VVYQD SDGYGRVYTAD
Sbjct: 360 PTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTAD 419
Query: 1108 PY 1113
PY
Sbjct: 420 PY 421
>ref|NP_001104297.1| RNA binding protein fox-1 homolog 2 isoform 3 [Mus musculus].
Length = 445
Score = 509 bits (1311), Expect = e-144
Identities = 266/362 (73%), Positives = 268/362 (74%), Gaps = 1/362 (0%)
Frame = +1
Query: 31 ENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYA 210
+NEPLTPGYHGFPARD QGNQEPT TPDAMV EYGVPHTQDYA
Sbjct: 60 QNEPLTPGYHGFPARDGQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYA 119
Query: 211 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXP 387
GQTSEHNLTLYGSTQ HGEQSSNSPS QNGSLT TE P
Sbjct: 120 GQTSEHNLTLYGSTQPHGEQSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTP 179
Query: 388 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 567
KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
Sbjct: 180 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 239
Query: 568 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 747
HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG
Sbjct: 240 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 299
Query: 748 NDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVP 927
N+AAVPLSGRGGINTYIPLI IPGFPYP FRGAHLRGRGRTVYGAVRAVP
Sbjct: 300 NEAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP 355
Query: 928 PTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTAD 1107
PTAIPAYP VVYQD SDGYGRVYTAD
Sbjct: 356 PTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTAD 415
Query: 1108 PY 1113
PY
Sbjct: 416 PY 417
>ref|NP_780596.1| RNA binding protein fox-1 homolog 2 isoform 2 [Mus musculus].
Length = 435
Score = 486 bits (1251), Expect(2) = e-142
Identities = 250/313 (79%), Positives = 252/313 (80%), Gaps = 1/313 (0%)
Frame = +1
Query: 31 ENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYA 210
+NEPLTPGYHGFPARD QGNQEPT TPDAMV EYGVPHTQDYA
Sbjct: 60 QNEPLTPGYHGFPARDGQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYA 119
Query: 211 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXP 387
GQTSEHNLTLYGSTQ HGEQSSNSPS QNGSLT TE P
Sbjct: 120 GQTSEHNLTLYGSTQPHGEQSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTP 179
Query: 388 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 567
KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
Sbjct: 180 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 239
Query: 568 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 747
HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG
Sbjct: 240 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 299
Query: 748 NDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVP 927
N+AAVPLSGRGGINTYIPLI IPGFPYP FRGAHLRGRGRTVYGAVRAVP
Sbjct: 300 NEAAVPLSGRGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP 355
Query: 928 PTAIPAYPSVVYQ 966
PTAIPAYP V Q
Sbjct: 356 PTAIPAYPGVDMQ 368
Score = 38.1 bits (87), Expect(2) = e-142
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = +2
Query: 995 VDMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
VDMQPTDMHS TAT AGCTQ TP
Sbjct: 365 VDMQPTDMHSLLLQPQPQLLQPLQPLTATVTAGCTQLTP 403
>ref|NP_001104298.1| RNA binding protein fox-1 homolog 2 isoform 4 [Mus musculus].
Length = 381
Score = 487 bits (1254), Expect = e-138
Identities = 254/346 (73%), Positives = 257/346 (74%), Gaps = 1/346 (0%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQTSEHNLTLYGSTQ
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQP 67
Query: 259 HGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPD 435
HGEQSSNSPS QNGSLT TE PKRLHVSNIPFRFRDPD
Sbjct: 68 HGEQSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 127
Query: 436 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 615
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187
Query: 616 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 795
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN+AAVPLSGRGGINTY
Sbjct: 188 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNEAAVPLSGRGGINTY 247
Query: 796 IPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXX 975
IPLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 248 IPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGF 307
Query: 976 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 308 YGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 353
>ref|NP_001104300.1| RNA binding protein fox-1 homolog 2 isoform 6 [Mus musculus].
Length = 377
Score = 474 bits (1221), Expect = e-134
Identities = 251/346 (72%), Positives = 253/346 (73%), Gaps = 1/346 (0%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQTSEHNLTLYGSTQ
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQP 67
Query: 259 HGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPD 435
HGEQSSNSPS QNGSLT TE PKRLHVSNIPFRFRDPD
Sbjct: 68 HGEQSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 127
Query: 436 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 615
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187
Query: 616 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 795
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN+AAVPLSGRGGINTY
Sbjct: 188 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNEAAVPLSGRGGINTY 247
Query: 796 IPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXX 975
IPLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 248 IPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGF 303
Query: 976 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 304 YGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 349
>ref|NP_001104299.1| RNA binding protein fox-1 homolog 2 isoform 5 [Mus musculus].
Length = 378
Score = 465 bits (1196), Expect = e-131
Identities = 248/347 (71%), Positives = 252/347 (72%), Gaps = 2/347 (0%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQTSEHNLTLYGSTQ
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQP 67
Query: 259 HGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPD 435
HGEQSSNSPS QNGSLT TE PKRLHVSNIPFRFRDPD
Sbjct: 68 HGEQSSNSPSNQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 127
Query: 436 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 615
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187
Query: 616 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 795
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN+AAVPLSGRGGINTY
Sbjct: 188 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNEAAVPLSGRGGINTY 247
Query: 796 IPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQD-X 972
IPLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP +V Q+
Sbjct: 248 IPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGIVLQEPI 303
Query: 973 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 304 ISAKIPQGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 350
>ref|NP_899011.2| RNA binding protein fox-1 homolog 1 isoform alpha [Mus musculus].
Length = 417
Score = 300 bits (768), Expect = 1e-81
Identities = 183/365 (50%), Positives = 201/365 (55%), Gaps = 7/365 (1%)
Frame = +1
Query: 40 PLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYA 210
P P + G QGNQE A PD M AEY PH +Y
Sbjct: 19 PAAPYFPGL----MQGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYT 73
Query: 211 GQTS--EHNLTLYGSTQAHGEQSSN-SPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXX 381
GQT+ +H L LY TQ H EQS++ S T +G+ T
Sbjct: 74 GQTTVPDHTLNLYPPTQTHSEQSADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTESKS 133
Query: 382 XPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 561
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE
Sbjct: 134 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 193
Query: 562 KLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVS 741
KLHGTVVEGRKIEVNNATARVMTNKK V PY NGWKL+PVVGAVY P+ YA + +
Sbjct: 194 KLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPDFYAGTVLLCQAN 253
Query: 742 LGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR- 918
+ + SG L+ +PGFPYP +RGAHLRGRGRTVY R
Sbjct: 254 --QEGSSMYSGPSS------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRA 304
Query: 919 AVPPTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVY 1098
A PP IPAY VVYQ+ SD YGRVY
Sbjct: 305 AAPPPPIPAYGGVVYQE-------PVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVY 357
Query: 1099 TADPY 1113
ADPY
Sbjct: 358 AADPY 362
>ref|NP_067452.2| RNA binding protein fox-1 homolog 1 isoform gamma [Mus musculus].
Length = 396
Score = 300 bits (767), Expect = 2e-81
Identities = 180/351 (51%), Positives = 197/351 (56%), Gaps = 7/351 (1%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
+GNQE A PD M AEY PH +Y GQT+ +H L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPDHTLNLYP 67
Query: 247 STQAHGEQSSN-SPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRF 423
TQ H EQS++ S T +G+ T PKRLHVSNIPFRF
Sbjct: 68 PTQTHSEQSADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRF 127
Query: 424 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 603
RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV
Sbjct: 128 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
Query: 604 NNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGG 783
NNATARVMTNKK V PY NGWKL+PVVGAVY P+ YA + + + + SG
Sbjct: 188 NNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPDFYAGTVLLCQAN--QEGSSMYSGPSS 245
Query: 784 INTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPSVV 960
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY VV
Sbjct: 246 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 298
Query: 961 YQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
YQD SD YGRVY ADPY
Sbjct: 299 YQD--------GFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 341
>ref|NP_001020102.2| RNA binding protein fox-1 homolog 3 isoform 3 [Mus musculus].
Length = 313
Score = 267 bits (682), Expect = 1e-71
Identities = 165/323 (51%), Positives = 175/323 (54%), Gaps = 10/323 (3%)
Frame = +1
Query: 175 AEYGVPH---TQDYAGQTS---EHNLTLYGSTQAHGEQSSNSPSTQN--GSLTTEXXXXX 330
AEY P TQDY+GQT EH +TLY Q H EQ STQ G+ T
Sbjct: 20 AEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVPQADEA 79
Query: 331 XXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 510
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG
Sbjct: 80 AQTDNQQLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 139
Query: 511 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGA 690
FGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVMTNKK PYANGWKL+PVVG
Sbjct: 140 FGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYANGWKLNPVVGT 199
Query: 691 VYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFR 870
VYGPE YA +S FPYP +R
Sbjct: 200 VYGPEFYAVTS-----------------------------------FPYP-TTGTAVAYR 223
Query: 871 GAHLRGRGRTVYGAVRAV-PPTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXX 1047
GAHLRGRGR VY RA PP IP Y +VVYQD
Sbjct: 224 GAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQD--------GFYGAEIYGGYAAYRYAQ 275
Query: 1048 XXXXXXXXXSDGYGRVY-TADPY 1113
SD YGRVY ADPY
Sbjct: 276 PAAATAAAYSDSYGRVYAAADPY 298
>ref|NP_001034257.1| RNA binding protein fox-1 homolog 3 isoform 2 [Mus musculus].
Length = 326
Score = 264 bits (675), Expect = 8e-71
Identities = 165/322 (51%), Positives = 175/322 (54%), Gaps = 9/322 (2%)
Frame = +1
Query: 175 AEYGVPH---TQDYAGQTS---EHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXX 333
AEY P TQDY+GQT EH +TLY Q H EQ STQ + T T
Sbjct: 20 AEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVPADEAA 79
Query: 334 XXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF 513
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
Sbjct: 80 QTDNQQLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF 139
Query: 514 GFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAV 693
GFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVMTNKK PYANGWKL+PVVG V
Sbjct: 140 GFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYANGWKLNPVVGTV 199
Query: 694 YGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRG 873
YGPE YA +S FPYP +RG
Sbjct: 200 YGPEFYAVTS-----------------------------------FPYP-TTGTAVAYRG 223
Query: 874 AHLRGRGRTVYGAVRAV-PPTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXX 1050
AHLRGRGR VY RA PP IP Y +VVYQD
Sbjct: 224 AHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQD--------GFYGAEIYGGYAAYRYAQP 275
Query: 1051 XXXXXXXXSDGYGRVY-TADPY 1113
SD YGRVY ADPY
Sbjct: 276 AAATAAAYSDSYGRVYAAADPY 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,907,653
Number of extensions: 1087965
Number of successful extensions: 3539
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 3379
Number of HSP's successfully gapped: 62
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012918
(1113 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076048.1| RNA binding protein fox-1 homolog 2 isoform ... 532 e-151
Alignment gi|NP_001076047.1| RNA binding protein fox-1 homolog 2 isoform ... 527 e-150
Alignment gi|NP_001026865.1| RNA binding protein fox-1 homolog 2 isoform ... 496 e-140
Alignment gi|NP_001076046.1| RNA binding protein fox-1 homolog 2 isoform ... 473 e-139
Alignment gi|NP_001076045.1| RNA binding protein fox-1 homolog 2 isoform ... 483 e-136
Alignment gi|NP_055124.1| RNA binding protein fox-1 homolog 2 isoform 2 [... 455 e-134
Alignment gi|NP_001135806.1| RNA binding protein fox-1 homolog 1 isoform ... 299 3e-81
Alignment gi|NP_665899.1| RNA binding protein fox-1 homolog 1 isoform 2 [... 299 3e-81
Alignment gi|NP_665898.1| RNA binding protein fox-1 homolog 1 isoform 1 [... 299 3e-81
Alignment gi|NP_061193.2| RNA binding protein fox-1 homolog 1 isoform 4 [... 299 3e-81
>ref|NP_001076048.1| RNA binding protein fox-1 homolog 2 isoform 6 [Homo sapiens].
Length = 450
Score = 532 bits (1370), Expect = e-151
Identities = 272/361 (75%), Positives = 274/361 (75%)
Frame = +1
Query: 31 ENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYA 210
+NEPLTPGYHGFPARDSQGNQEPT TPDAMV EYGVPHTQDYA
Sbjct: 62 QNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYA 121
Query: 211 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPK 390
GQT EHNLTLYGSTQAHGEQSSNSPSTQNGSLTTE PK
Sbjct: 122 GQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPK 181
Query: 391 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 570
RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH
Sbjct: 182 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 241
Query: 571 GTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN 750
GTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN
Sbjct: 242 GTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGN 301
Query: 751 DAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPP 930
DAAVPLSGRGGINTYIPLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVPP
Sbjct: 302 DAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPP 361
Query: 931 TAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADP 1110
TAIPAYP VVYQD SDGYGRVYTADP
Sbjct: 362 TAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADP 421
Query: 1111 Y 1113
Y
Sbjct: 422 Y 422
>ref|NP_001076047.1| RNA binding protein fox-1 homolog 2 isoform 5 [Homo sapiens].
Length = 451
Score = 527 bits (1358), Expect = e-150
Identities = 272/362 (75%), Positives = 274/362 (75%), Gaps = 1/362 (0%)
Frame = +1
Query: 31 ENEPLTPGYHGFPARDSQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYA 210
+NEPLTPGYHGFPARDSQGNQEPT TPDAMV EYGVPHTQDYA
Sbjct: 62 QNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYA 121
Query: 211 GQTSEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXP 387
GQT EHNLTLYGSTQAHGEQSSNSPSTQNGSLT TE P
Sbjct: 122 GQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTP 181
Query: 388 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 567
KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
Sbjct: 182 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 241
Query: 568 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 747
HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG
Sbjct: 242 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 301
Query: 748 NDAAVPLSGRGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVP 927
NDAAVPLSGRGGINTYIPLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVP
Sbjct: 302 NDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP 361
Query: 928 PTAIPAYPSVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTAD 1107
PTAIPAYP VVYQD SDGYGRVYTAD
Sbjct: 362 PTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTAD 421
Query: 1108 PY 1113
PY
Sbjct: 422 PY 423
>ref|NP_001026865.1| RNA binding protein fox-1 homolog 2 isoform 1 [Homo sapiens].
Length = 380
Score = 496 bits (1276), Expect = e-140
Identities = 256/345 (74%), Positives = 258/345 (74%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQT EHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
HGEQSSNSPSTQNGSLTTE PKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXXX 978
PLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 248 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 307
Query: 979 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 308 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 352
>ref|NP_001076046.1| RNA binding protein fox-1 homolog 2 isoform 4 [Homo sapiens].
Length = 370
Score = 473 bits (1216), Expect(2) = e-139
Identities = 240/296 (81%), Positives = 242/296 (81%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQT EHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
HGEQSSNSPSTQNGSLTTE PKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQ 966
PLISLPL+PGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP V Q
Sbjct: 248 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQ 303
Score = 42.7 bits (99), Expect(2) = e-139
Identities = 21/39 (53%), Positives = 21/39 (53%)
Frame = +2
Query: 995 VDMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
VDMQPTDMHS T T MAGCTQPTP
Sbjct: 300 VDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMAGCTQPTP 338
>ref|NP_001076045.1| RNA binding protein fox-1 homolog 2 isoform 3 [Homo sapiens].
Length = 376
Score = 483 bits (1243), Expect = e-136
Identities = 253/345 (73%), Positives = 254/345 (73%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQT EHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPDL 438
HGEQSSNSPSTQNGSLTTE PKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 439 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 618
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 619 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 798
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 799 PLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQDXXX 978
PLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP VVYQD
Sbjct: 248 PLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 303
Query: 979 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
SDGYGRVYTADPY
Sbjct: 304 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY 348
>ref|NP_055124.1| RNA binding protein fox-1 homolog 2 isoform 2 [Homo sapiens].
Length = 367
Score = 455 bits (1171), Expect(2) = e-134
Identities = 237/297 (79%), Positives = 238/297 (80%), Gaps = 1/297 (0%)
Frame = +1
Query: 79 SQGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQDYAGQTSEHNLTLYGSTQA 258
+QGNQEPT TPDAMV EYGVPHTQDYAGQT EHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 259 HGEQSSNSPSTQNGSLT-TEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFRFRDPD 435
HGEQSSNSPSTQNGSLT TE PKRLHVSNIPFRFRDPD
Sbjct: 68 HGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 127
Query: 436 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 615
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187
Query: 616 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 795
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY
Sbjct: 188 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 247
Query: 796 IPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVRAVPPTAIPAYPSVVYQ 966
IPLI IPGFPYP FRGAHLRGRGRTVYGAVRAVPPTAIPAYP V Q
Sbjct: 248 IPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQ 300
Score = 42.7 bits (99), Expect(2) = e-134
Identities = 21/39 (53%), Positives = 21/39 (53%)
Frame = +2
Query: 995 VDMQPTDMHSXXXXXXXXXXXXXXXXTATGMAGCTQPTP 1111
VDMQPTDMHS T T MAGCTQPTP
Sbjct: 297 VDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMAGCTQPTP 335
>ref|NP_001135806.1| RNA binding protein fox-1 homolog 1 isoform 4 [Homo sapiens].
Length = 397
Score = 299 bits (766), Expect = 3e-81
Identities = 183/354 (51%), Positives = 196/354 (55%), Gaps = 10/354 (2%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
+GNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 247 STQAHGEQS--SNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS S T +G+ T PKRLHVSNIPFR
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 246
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 247 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 296
Query: 952 SVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
VVYQD SD YGRVY ADPY
Sbjct: 297 GVVYQD--------GFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 342
>ref|NP_665899.1| RNA binding protein fox-1 homolog 1 isoform 2 [Homo sapiens].
Length = 392
Score = 299 bits (766), Expect = 3e-81
Identities = 183/354 (51%), Positives = 196/354 (55%), Gaps = 10/354 (2%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
QGNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 247 STQAHGEQS--SNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS S T +G+ T PKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 266
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 316
Query: 952 SVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
VVYQ+ SD YGRVY ADPY
Sbjct: 317 GVVYQE-------PVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 363
>ref|NP_665898.1| RNA binding protein fox-1 homolog 1 isoform 1 [Homo sapiens].
Length = 418
Score = 299 bits (766), Expect = 3e-81
Identities = 183/354 (51%), Positives = 196/354 (55%), Gaps = 10/354 (2%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
QGNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 247 STQAHGEQS--SNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS S T +G+ T PKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 266
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 316
Query: 952 SVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
VVYQ+ SD YGRVY ADPY
Sbjct: 317 GVVYQE-------PVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 363
>ref|NP_061193.2| RNA binding protein fox-1 homolog 1 isoform 4 [Homo sapiens].
Length = 397
Score = 299 bits (766), Expect = 3e-81
Identities = 183/354 (51%), Positives = 196/354 (55%), Gaps = 10/354 (2%)
Frame = +1
Query: 82 QGNQEPTATPDAMVXXXXXXXXXXXXXXXXXAEYGVPHTQ---DYAGQTS--EHNLTLYG 246
+GNQE A PD M AEY PH +Y GQT+ EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPPQNGIP-AEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 247 STQAHGEQS--SNSPSTQNGSLTTEXXXXXXXXXXXXXXXXXXXXXXXPKRLHVSNIPFR 420
Q H EQS S T +G+ T PKRLHVSNIPFR
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
Query: 421 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 600
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
Query: 601 VNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLSG 774
VNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS- 246
Query: 775 RGGINTYIPLISLPLIPGFPYPXXXXXXXXFRGAHLRGRGRTVYGAVR-AVPPTAIPAYP 951
L+ +PGFPYP +RGAHLRGRGRTVY R A PP IPAY
Sbjct: 247 ---------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYG 296
Query: 952 SVVYQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGYGRVYTADPY 1113
VVYQD SD YGRVY ADPY
Sbjct: 297 GVVYQD--------GFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPY 342
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,868,368
Number of extensions: 1292439
Number of successful extensions: 4052
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 3893
Number of HSP's successfully gapped: 80
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012918
(1113 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 450 e-124
Sscrofa_Chr03 147 2e-32
>Sscrofa_Chr05
|| Length = 111506441
Score = 450 bits (227), Expect = e-124
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 83 agggtaaccaggagccaacagcaactcctgatgcaatggttcagccttttactacaatcc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9606473 agggtaaccaggagccaacagcaactcctgatgcaatggttcagccttttactacaatcc 9606532
Query: 143 cgtttccgccacctccacagaatggaattcccgccgagtatggagtgccacacactcagg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9606533 cgtttccgccacctccacagaatggaattcccgccgagtatggagtgccacacactcagg 9606592
Query: 203 actatgccggccagaccagtgagcataacctgaccctctacggcagcacgcaagcccatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9606593 actatgccggccagaccagtgagcataacctgaccctctacggcagcacgcaagcccatg 9606652
Query: 263 gggagcagagtagcaactcccccagcacacagaacggatctctgacg 309
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9606653 gggagcagagtagcaactcccccagcacacagaacggatctctgacg 9606699
Score = 450 bits (227), Expect = e-124
Identities = 227/227 (100%)
Strand = Plus / Minus
Query: 83 agggtaaccaggagccaacagcaactcctgatgcaatggttcagccttttactacaatcc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741368 agggtaaccaggagccaacagcaactcctgatgcaatggttcagccttttactacaatcc 9741309
Query: 143 cgtttccgccacctccacagaatggaattcccgccgagtatggagtgccacacactcagg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741308 cgtttccgccacctccacagaatggaattcccgccgagtatggagtgccacacactcagg 9741249
Query: 203 actatgccggccagaccagtgagcataacctgaccctctacggcagcacgcaagcccatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741248 actatgccggccagaccagtgagcataacctgaccctctacggcagcacgcaagcccatg 9741189
Query: 263 gggagcagagtagcaactcccccagcacacagaacggatctctgacg 309
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741188 gggagcagagtagcaactcccccagcacacagaacggatctctgacg 9741142
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 309 gacagaagggggcgcacagacagacggccagcagtcacagacacaaagcagtgaaaattc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9626289 gacagaagggggcgcacagacagacggccagcagtcacagacacaaagcagtgaaaattc 9626348
Query: 369 agagagtaaatctaccccgaaacgactgcatgtctctaatattcctttccgcttccggga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9626349 agagagtaaatctaccccgaaacgactgcatgtctctaatattcctttccgcttccggga 9626408
Query: 429 ccctgacctccggcagatgtttggg 453
|||||||||||||||||||||||||
Sbjct: 9626409 ccctgacctccggcagatgtttggg 9626433
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 309 gacagaagggggcgcacagacagacggccagcagtcacagacacaaagcagtgaaaattc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9725943 gacagaagggggcgcacagacagacggccagcagtcacagacacaaagcagtgaaaattc 9725884
Query: 369 agagagtaaatctaccccgaaacgactgcatgtctctaatattcctttccgcttccggga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9725883 agagagtaaatctaccccgaaacgactgcatgtctctaatattcctttccgcttccggga 9725824
Query: 429 ccctgacctccggcagatgtttggg 453
|||||||||||||||||||||||||
Sbjct: 9725823 ccctgacctccggcagatgtttggg 9725799
Score = 274 bits (138), Expect = 1e-70
Identities = 141/142 (99%)
Strand = Plus / Minus
Query: 809 gtctccctttaattcctggcttcccttacccaactgcagccaccacggcggccgctttca 868
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704037 gtctccctttagttcctggcttcccttacccaactgcagccaccacggcggccgctttca 9703978
Query: 869 gaggagcccacctgaggggcagagggcggacggtatacggtgcggtccgagcggtacctc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703977 gaggagcccacctgaggggcagagggcggacggtatacggtgcggtccgagcggtacctc 9703918
Query: 929 caacagccattcccgcctatcc 950
||||||||||||||||||||||
Sbjct: 9703917 caacagccattcccgcctatcc 9703896
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 713 cagcatccagctttcaggcagatgtgtcactaggcaatgacgcagccgtgcccctatcag 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9705229 cagcatccagctttcaggcagatgtgtcactaggcaatgacgcagccgtgcccctatcag 9705170
Query: 773 gaagagggggcatcaacacttacattcctttaatcagt 810
||||||||||||||||||||||||||||||||||||||
Sbjct: 9705169 gaagagggggcatcaacacttacattcctttaatcagt 9705132
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 506 agggattcgggttcgtaactttcgagaatagtgctgatgcagacagggccagggagaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9711992 agggattcgggttcgtaactttcgagaatagtgctgatgcagacagggccagggagaaat 9711933
Query: 566 tacacggcaccgtggtagagggccgtaaaatcgaggtg 603
||||||||||||||||||||||||||||||||||||||
Sbjct: 9711932 tacacggcaccgtggtagagggccgtaaaatcgaggtg 9711895
Score = 170 bits (86), Expect = 1e-39
Identities = 92/94 (97%)
Strand = Plus / Minus
Query: 994 ggtggatatgcagcctacagatatgcacagcctgctactgcaaccgcagccaccgctgct 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690495 ggtggatatgcagcctacagatatgcacagcctgctactgcaaccgcagccaccgctgct 9690436
Query: 1054 gcagccgccgcccgcgcttacagcgacgggtatg 1087
|||||||||||| ||||||||||||||||||||
Sbjct: 9690435 gcagccgccgccgccgcttacagcgacgggtatg 9690402
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 599 aggtgaataacgccacggcacgtgtaatgaccaataagaagatggtcacaccgtatgcaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709072 aggtgaataacgccacggcacgtgtaatgaccaataagaagatggtcacaccgtatgcaa 9709013
Query: 659 atggt 663
|||||
Sbjct: 9709012 atggt 9709008
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 453 gcagtttggcaaaatcctagatgtagaaataatctttaatgaacgtggctctaagg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9629675 gcagtttggcaaaatcctagatgtagaaataatctttaatgaacgtggctctaagg 9629730
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 453 gcagtttggcaaaatcctagatgtagaaataatctttaatgaacgtggctctaagg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9722544 gcagtttggcaaaatcctagatgtagaaataatctttaatgaacgtggctctaagg 9722489
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 661 ggttggaaattaagcccagtcgttggagctgtatatggtcccgagttgtatgcag 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9705394 ggttggaaattaagcccagtcgttggagctgtatatggtcccgagttgtatgcag 9705340
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 32 agaacgagcctctgaccccaggttatcatggattcccagcacgggacagccagg 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9483522 agaacgagcctctgaccccaggttatcatggattcccagcacgggacagccagg 9483575
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 951 cagtgtggtttaccaggacggattttacggtgctgacctctatg 994
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700191 cagtgtggtttaccaggacggattttacggtgctgacctctatg 9700148
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gattccatggaccagcccaggaacccctgtgag 33
|||||||||||||||||||||||||||||||||
Sbjct: 9466582 gattccatggaccagcccaggaacccctgtgag 9466614
Score = 60.0 bits (30), Expect = 3e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1084 tatggcagggtgtacacagccgacccctac 1113
||||||||||||||||||||||||||||||
Sbjct: 9689968 tatggcagggtgtacacagccgacccctac 9689939
>Sscrofa_Chr03
|| Length = 144787322
Score = 147 bits (74), Expect = 2e-32
Identities = 92/98 (93%)
Strand = Plus / Minus
Query: 506 agggattcgggttcgtaactttcgagaatagtgctgatgcagacagggccagggagaaat 565
||||||| || |||||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct: 36004258 agggatttggtttcgtaactttcgaaaatagtgccgatgcggacagggcgagggagaaat 36004199
Query: 566 tacacggcaccgtggtagagggccgtaaaatcgaggtg 603
||||||||||||||||||||||||||||||||||||||
Sbjct: 36004198 tacacggcaccgtggtagagggccgtaaaatcgaggtg 36004161
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,099,990
Number of extensions: 134
Number of successful extensions: 134
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 17
Length of query: 1113
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1092
Effective length of database: 2,808,413,156
Effective search space: 3066787166352
Effective search space used: 3066787166352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)