Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012920
(1077 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069089.1| splicing factor, arginine/serine-rich 11 [Bo... 239 3e-77
Alignment gi|NP_001193066.1| splicing regulatory glutamine/lysine-rich pr... 137 2e-32
Alignment gi|XP_002696348.1| PREDICTED: splicing factor, arginine/serine-... 83 4e-16
>ref|NP_001069089.1| splicing factor, arginine/serine-rich 11 [Bos taurus].
Length = 482
Score = 239 bits (611), Expect(2) = 3e-77
Identities = 136/206 (66%), Positives = 137/206 (66%)
Frame = +1
Query: 274 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 453
MSNTT+VPST TEVIQVTNVSPSASSEQMRTLFGFLGKIDE
Sbjct: 1 MSNTTIVPSTAGPGPSGGPGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 60
Query: 454 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 633
LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA
Sbjct: 61 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 120
Query: 634 LSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQS 813
LS QIGAV NSQS
Sbjct: 121 LSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQS 180
Query: 814 LAADQLLKLMSTVDPKLNHVAAGLVS 891
LAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 181 LAADQLLKLMSTVDPKLNHVAAGLVS 206
Score = 68.6 bits (166), Expect(2) = 3e-77
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 208 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 244
>ref|NP_001193066.1| splicing regulatory glutamine/lysine-rich protein 1 [Bos taurus].
Length = 632
Score = 137 bits (345), Expect = 2e-32
Identities = 67/92 (72%), Positives = 79/92 (85%)
Frame = +1
Query: 364 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVV 543
T VIQVTN+S + +SEQMRTLF FLG+I+ELRL+PPD++PL SS+VC+VKF DP S V
Sbjct: 18 TAVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGV 77
Query: 544 AQHLTNTVFVDRALIVVPYAEGVIPDETKALS 639
AQHLTNTVF+DRALIVVP AEG IP+E KALS
Sbjct: 78 AQHLTNTVFIDRALIVVPCAEGKIPEEAKALS 109
>ref|XP_002696348.1| PREDICTED: splicing factor, arginine/serine-rich 12-like [Bos
taurus].
Length = 325
Score = 83.2 bits (204), Expect = 4e-16
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = +1
Query: 475 DSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALS 639
++PL SS+VC+VKF DP S VAQHLTNTVF+DRALIVVP AEG IP+E KALS
Sbjct: 7 NAPLAFSSKVCYVKFRDPSSVGVAQHLTNTVFIDRALIVVPCAEGKIPEEAKALS 61
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,097,585
Number of extensions: 480069
Number of successful extensions: 1424
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1422
Number of HSP's successfully gapped: 4
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012920
(1077 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867948.1| PREDICTED: similar to splicing factor, arginine... 72 5e-27
Alignment gi|XP_853826.1| PREDICTED: similar to splicing factor, arginine... 72 5e-27
Alignment gi|XP_867937.1| PREDICTED: similar to splicing factor, arginine... 69 1e-16
Alignment gi|XP_547337.2| PREDICTED: similar to splicing factor, arginine... 69 1e-16
>ref|XP_867948.1| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 4 [Canis familiaris].
Length = 379
Score = 71.6 bits (174), Expect(2) = 5e-27
Identities = 46/98 (46%), Positives = 48/98 (48%)
Frame = +1
Query: 598 YAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXX 777
++ GVIPDETKALS QIGAV
Sbjct: 5 FSAGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAA 64
Query: 778 XXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 891
NSQSLAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 65 LGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 102
Score = 68.6 bits (166), Expect(2) = 5e-27
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 104 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 140
>ref|XP_853826.1| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 2 [Canis familiaris].
Length = 378
Score = 71.6 bits (174), Expect(2) = 5e-27
Identities = 46/98 (46%), Positives = 48/98 (48%)
Frame = +1
Query: 598 YAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXX 777
++ GVIPDETKALS QIGAV
Sbjct: 5 FSAGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAA 64
Query: 778 XXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 891
NSQSLAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 65 LGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 102
Score = 68.6 bits (166), Expect(2) = 5e-27
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 104 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 140
>ref|XP_867937.1| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 3 [Canis familiaris].
Length = 293
Score = 68.6 bits (166), Expect(2) = 1e-16
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 19 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 55
Score = 37.0 bits (84), Expect(2) = 1e-16
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 841 MSTVDPKLNHVAAGLVS 891
MSTVDPKLNHVAAGLVS
Sbjct: 1 MSTVDPKLNHVAAGLVS 17
>ref|XP_547337.2| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 1 [Canis familiaris].
Length = 293
Score = 68.6 bits (166), Expect(2) = 1e-16
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 19 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 55
Score = 37.0 bits (84), Expect(2) = 1e-16
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 841 MSTVDPKLNHVAAGLVS 891
MSTVDPKLNHVAAGLVS
Sbjct: 1 MSTVDPKLNHVAAGLVS 17
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,804,259
Number of extensions: 436634
Number of successful extensions: 1415
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 8
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012920
(1077 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038052.1| serine/arginine-rich splicing factor 11 [Sus... 240 1e-77
Alignment gi|XP_003134051.2| PREDICTED: splicing regulatory glutamine/lys... 75 5e-14
>ref|NP_001038052.1| serine/arginine-rich splicing factor 11 [Sus scrofa].
Length = 483
Score = 240 bits (612), Expect(2) = 1e-77
Identities = 137/206 (66%), Positives = 137/206 (66%)
Frame = +1
Query: 274 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 453
MSNTTVVPST TEVIQVTNVSPSASSEQMRTLFGFLGKIDE
Sbjct: 1 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 60
Query: 454 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 633
LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA
Sbjct: 61 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 120
Query: 634 LSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQS 813
LS QIGAV NSQS
Sbjct: 121 LSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQS 180
Query: 814 LAADQLLKLMSTVDPKLNHVAAGLVS 891
LAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 181 LAADQLLKLMSTVDPKLNHVAAGLVS 206
Score = 68.6 bits (166), Expect(2) = 1e-77
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 208 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 244
>ref|XP_003134051.2| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Sus scrofa].
Length = 643
Score = 75.5 bits (184), Expect = 5e-14
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = +1
Query: 499 RVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALS 639
+VC+VKF DP S VAQHLTNTVF+DRALIVVP AEG IP+E KALS
Sbjct: 105 QVCYVKFRDPSSVGVAQHLTNTVFIDRALIVVPCAEGKIPEEAKALS 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,945,391
Number of extensions: 378575
Number of successful extensions: 1113
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012920
(1077 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001087221.1| splicing factor, arginine/serine-rich 11 iso... 236 3e-76
Alignment gi|NP_001087222.1| splicing factor, arginine/serine-rich 11 iso... 230 2e-74
Alignment gi|NP_081265.1| splicing factor, arginine/serine-rich 11 isofor... 72 4e-27
>ref|NP_001087221.1| splicing factor, arginine/serine-rich 11 isoform 2 [Mus musculus].
Length = 511
Score = 236 bits (601), Expect(2) = 3e-76
Identities = 142/232 (61%), Positives = 149/232 (64%)
Frame = +1
Query: 196 GSSSPSLSLFVVCLMC*SRSENASSAMSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVI 375
G +SPS++L + L + A+ AMS+T VVPS TEVI
Sbjct: 11 GPTSPSVALTNLALRR-NFFREAARAMSSTAVVPSAPGPGPGPSGGPGGG------TEVI 63
Query: 376 QVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHL 555
QVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHL
Sbjct: 64 QVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHL 123
Query: 556 TNTVFVDRALIVVPYAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXX 735
TNTVFVDRALIVVPYAEGVIPDETKALS QIGAV
Sbjct: 124 TNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPL 183
Query: 736 XXXXXXXXXXXXXXXXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 891
NSQSLAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 184 AALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 235
Score = 68.6 bits (166), Expect(2) = 3e-76
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 237 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 273
>ref|NP_001087222.1| splicing factor, arginine/serine-rich 11 isoform 1 [Mus musculus].
Length = 476
Score = 230 bits (586), Expect(2) = 2e-74
Identities = 134/206 (65%), Positives = 135/206 (65%)
Frame = +1
Query: 274 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 453
MS+T VVPS TEVIQVTNVSPSASSEQMRTLFGFLGKIDE
Sbjct: 1 MSSTAVVPSAPGPGPGPSGGPGGG------TEVIQVTNVSPSASSEQMRTLFGFLGKIDE 54
Query: 454 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 633
LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA
Sbjct: 55 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 114
Query: 634 LSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQS 813
LS QIGAV NSQS
Sbjct: 115 LSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQS 174
Query: 814 LAADQLLKLMSTVDPKLNHVAAGLVS 891
LAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 175 LAADQLLKLMSTVDPKLNHVAAGLVS 200
Score = 68.6 bits (166), Expect(2) = 2e-74
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 202 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 238
>ref|NP_081265.1| splicing factor, arginine/serine-rich 11 isoform 3 [Mus musculus].
Length = 423
Score = 71.6 bits (174), Expect(2) = 4e-27
Identities = 46/98 (46%), Positives = 48/98 (48%)
Frame = +1
Query: 598 YAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXX 777
++ GVIPDETKALS QIGAV
Sbjct: 50 FSAGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAA 109
Query: 778 XXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 891
NSQSLAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 110 LGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVS 147
Score = 68.6 bits (166), Expect(2) = 4e-27
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 149 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 185
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,988,403
Number of extensions: 377276
Number of successful extensions: 1296
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012920
(1077 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004759.1| serine/arginine-rich splicing factor 11 isoform... 233 2e-75
Alignment gi|NP_001177916.1| serine/arginine-rich splicing factor 11 isof... 233 2e-75
Alignment gi|NP_001070667.1| splicing regulatory glutamine/lysine-rich pr... 138 1e-32
>ref|NP_004759.1| serine/arginine-rich splicing factor 11 isoform 1 [Homo sapiens].
Length = 484
Score = 233 bits (595), Expect(2) = 2e-75
Identities = 136/207 (65%), Positives = 136/207 (65%), Gaps = 1/207 (0%)
Frame = +1
Query: 274 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXX-TEVIQVTNVSPSASSEQMRTLFGFLGKID 450
MSNTTVVPST TEVIQVTNVSPSASSEQMRTLFGFLGKID
Sbjct: 1 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID 60
Query: 451 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETK 630
ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDE K
Sbjct: 61 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK 120
Query: 631 ALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQ 810
ALS QIGAV NSQ
Sbjct: 121 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ 180
Query: 811 SLAADQLLKLMSTVDPKLNHVAAGLVS 891
SLAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 181 SLAADQLLKLMSTVDPKLNHVAAGLVS 207
Score = 68.6 bits (166), Expect(2) = 2e-75
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 209 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 245
>ref|NP_001177916.1| serine/arginine-rich splicing factor 11 isoform 2 [Homo sapiens].
Length = 483
Score = 233 bits (595), Expect(2) = 2e-75
Identities = 136/207 (65%), Positives = 136/207 (65%), Gaps = 1/207 (0%)
Frame = +1
Query: 274 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXX-TEVIQVTNVSPSASSEQMRTLFGFLGKID 450
MSNTTVVPST TEVIQVTNVSPSASSEQMRTLFGFLGKID
Sbjct: 1 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID 60
Query: 451 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETK 630
ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDE K
Sbjct: 61 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK 120
Query: 631 ALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQ 810
ALS QIGAV NSQ
Sbjct: 121 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ 180
Query: 811 SLAADQLLKLMSTVDPKLNHVAAGLVS 891
SLAADQLLKLMSTVDPKLNHVAAGLVS
Sbjct: 181 SLAADQLLKLMSTVDPKLNHVAAGLVS 207
Score = 68.6 bits (166), Expect(2) = 2e-75
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 894 SLKSDTSSKEIEEAMKRVREAQSLISAAIGPDKKEEK 1004
SLKSDTSSKEIEEAMKRVREAQSLISAAI PDKKEEK
Sbjct: 209 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 245
>ref|NP_001070667.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a [Homo
sapiens].
Length = 624
Score = 138 bits (347), Expect = 1e-32
Identities = 67/92 (72%), Positives = 80/92 (86%)
Frame = +1
Query: 364 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVV 543
T VIQVTN+S + +SEQMRTLF FLG+I+ELRL+PPD++PL SS+VC+VKF DP S V
Sbjct: 18 TSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGV 77
Query: 544 AQHLTNTVFVDRALIVVPYAEGVIPDETKALS 639
AQHLTNTVF+DRALIVVP AEG IP+E+KALS
Sbjct: 78 AQHLTNTVFIDRALIVVPCAEGKIPEESKALS 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,443,983
Number of extensions: 432053
Number of successful extensions: 1492
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1486
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012920
(1077 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 593 e-167
>Sscrofa_Chr06
|| Length = 157765593
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 5 actcgggcagcaattgaggtggttggaggcgaggtgggggcggccgtttgttttctcgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132224017 actcgggcagcaattgaggtggttggaggcgaggtgggggcggccgtttgttttctcgtg 132223958
Query: 65 gtctcgaactcgcgcgctcttttcctccctctccccccgcctcccccggcgagcggcagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223957 gtctcgaactcgcgcgctcttttcctccctctccccccgcctcccccggcgagcggcagg 132223898
Query: 125 gaggagaaacggcggcgacggaagcagcggctgtagctccggacaccgttctgtcttctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223897 gaggagaaacggcggcgacggaagcagcggctgtagctccggacaccgttctgtcttctc 132223838
Query: 185 ttcagcgaaccggttcctcttccccctccctctcactgtttgttgtgtgtttgatgtgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223837 ttcagcgaaccggttcctcttccccctccctctcactgtttgttgtgtgtttgatgtgtt 132223778
Query: 245 aaagcaggagcgagaacgcgagcagcgccatgagcaacactaccgtcgtccccagcact 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223777 aaagcaggagcgagaacgcgagcagcgccatgagcaacactaccgtcgtccccagcact 132223719
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 474 tgattcgcctttgccagtctcatcccgtgtctgctttgttaagttccatgatccagactc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132217626 tgattcgcctttgccagtctcatcccgtgtctgctttgttaagttccatgatccagactc 132217567
Query: 534 agcagttgtggcacagcatctgacaaacactgtattcgttgacagagctttgatagtcgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132217566 agcagttgtggcacagcatctgacaaacactgtattcgttgacagagctttgatagtcgt 132217507
Query: 594 accatatgcagaagg 608
|||||||||||||||
Sbjct: 132217506 accatatgcagaagg 132217492
Score = 226 bits (114), Expect = 2e-56
Identities = 121/122 (99%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 861 gttgaatcatgtagctgctggtcttgtttcac-aagtctgaaatcagatacctctagtaa 919
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 132209481 gttgaatcatgtagctgctggtcttgtttcaccaagtctgaaatcagatacctctagtaa 132209422
Query: 920 agaaatagaggaagccatgaagagagtacgagaagcacagtccttaatttctgctgctat 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132209421 agaaatagaggaagccatgaagagagtacgagaagcacagtccttaatttctgctgctat 132209362
Query: 980 ag 981
||
Sbjct: 132209361 ag 132209360
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 606 aggagttattcctgatgagactaaggctttgtctctgttggcaccagctaatgcagtggc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132213695 aggagttattcctgatgagactaaggctttgtctctgttggcaccagctaatgcagtggc 132213636
Query: 666 aggtcttctgcctggtggtggactcctgcctacccctaacccacttacccag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132213635 aggtcttctgcctggtggtggactcctgcctacccctaacccacttacccag 132213584
Score = 210 bits (106), Expect = 1e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 364 accgaggtaatccaggtgactaatgtctccccgagcgctagctctgagcagatgcggaca 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223658 accgaggtaatccaggtgactaatgtctccccgagcgctagctctgagcagatgcggacc 132223599
Query: 424 ctcttcggtttcctaggcaagatcgacgaactgcgcctcttcccgcctga 473
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223598 ctcttcggtttcctaggcaagatcgacgaactgcgcctcttcccgcctga 132223549
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 715 cagatcggcgctgttccactggctgctttgggagctcctactcttgatcctgcccttgct 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132211759 cagatcggcgctgttccactggctgctttgggagctcctactcttgatcctgcccttgct 132211700
Query: 775 gcacttgggcttcctggagcaaacttgaattctcag 810
||||||||||||||||||||||||||||||||||||
Sbjct: 132211699 gcacttgggcttcctggagcaaacttgaattctcag 132211664
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 987 gataagaaagaagaaaaacgaaggcactcaaggtcaagatcacgttctaggaggaggagg 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132207122 gataagaaagaagaaaaacgaaggcactcaaggtcaagatcacgttctaggaggaggagg 132207063
Query: 1047 acgccctc 1054
||||||||
Sbjct: 132207062 acgccctc 132207055
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 809 agtctcttgctgcagaccagttgctgaagcttatgagtactgttgatcccaagt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132210902 agtctcttgctgcagaccagttgctgaagcttatgagtactgttgatcccaagt 132210849
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,782,894
Number of extensions: 280
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 8
Length of query: 1077
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1056
Effective length of database: 2,808,413,156
Effective search space: 2965684292736
Effective search space used: 2965684292736
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)